AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42452

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42452.t1 MTR_1g055165 72.973 333 49 5 8 314 1 318 5.35e-162 454
MS.gene42452.t1 MTR_1g055175 82.632 190 33 0 125 314 12 201 6.52e-114 328
MS.gene42452.t1 MTR_1g055135 48.925 372 123 6 9 314 5 375 1.11e-105 313
MS.gene42452.t1 MTR_4g109280 42.340 359 141 13 16 314 7 359 6.12e-72 226
MS.gene42452.t1 MTR_1g055195 60.825 194 67 6 127 314 288 478 8.74e-70 224
MS.gene42452.t1 MTR_5g097210 61.957 184 67 3 127 310 179 359 9.31e-70 221
MS.gene42452.t1 MTR_5g097210 31.308 214 100 9 14 215 6 184 4.99e-16 78.2
MS.gene42452.t1 MTR_4g109270 40.548 365 142 11 17 314 8 364 2.14e-69 220
MS.gene42452.t1 MTR_3g103020 40.054 372 138 11 16 314 19 378 2.45e-66 213
MS.gene42452.t1 MTR_1g055250 63.158 171 54 4 125 291 81 246 6.89e-65 207
MS.gene42452.t1 MTR_4g117850 40.162 371 128 13 14 307 20 373 2.22e-63 205
MS.gene42452.t1 MTR_4g122850 36.798 356 153 10 28 314 12 364 2.23e-62 202
MS.gene42452.t1 MTR_4g023130 42.284 324 142 13 16 313 8 312 1.80e-60 196
MS.gene42452.t1 MTR_4g117720 40.058 342 149 12 16 314 50 378 3.48e-60 197
MS.gene42452.t1 MTR_4g118370 53.476 187 67 4 125 311 91 257 1.64e-59 191
MS.gene42452.t1 MTR_4g094365 37.741 363 157 9 16 314 7 364 3.48e-59 194
MS.gene42452.t1 MTR_8g433030 41.796 323 151 11 8 309 31 337 1.23e-58 191
MS.gene42452.t1 MTR_4g117750 40.896 357 146 13 16 310 2 355 4.53e-57 191
MS.gene42452.t1 MTR_4g117750 48.182 110 54 3 205 312 373 481 4.52e-23 99.4
MS.gene42452.t1 MTR_4g023380 36.111 396 127 12 15 314 14 379 1.73e-56 187
MS.gene42452.t1 MTR_6g060650 51.579 190 85 5 125 313 189 372 2.14e-56 187
MS.gene42452.t1 MTR_6g060650 50.485 103 35 4 14 116 5 91 2.83e-11 63.9
MS.gene42452.t1 MTR_8g032390 40.000 350 152 10 8 309 31 370 3.60e-56 186
MS.gene42452.t1 MTR_4g023090 36.267 375 160 11 15 313 14 385 1.02e-55 185
MS.gene42452.t1 MTR_1g055145 51.185 211 59 4 20 230 36 202 2.51e-53 176
MS.gene42452.t1 MTR_4g023080 37.534 365 142 14 16 313 8 353 1.15e-52 176
MS.gene42452.t1 MTR_3g034180 35.638 376 155 11 16 313 122 488 2.88e-50 174
MS.gene42452.t1 MTR_8g433040 35.279 377 153 11 8 314 9 364 5.18e-50 170
MS.gene42452.t1 MTR_8g032380 35.279 377 153 11 8 314 9 364 5.18e-50 170
MS.gene42452.t1 MTR_4g117770 35.714 364 167 14 13 313 7 366 8.69e-50 169
MS.gene42452.t1 MTR_4g117810 35.714 364 167 14 13 313 7 366 8.69e-50 169
MS.gene42452.t1 MTR_4g116320 38.742 302 127 9 15 311 7 255 3.68e-49 164
MS.gene42452.t1 MTR_8g040935 48.485 198 88 8 125 314 17 208 2.26e-47 158
MS.gene42452.t1 MTR_4g023070 33.600 375 163 14 17 313 3 369 1.40e-46 161
MS.gene42452.t1 MTR_4g118380 49.419 172 70 6 125 285 191 356 6.25e-46 159
MS.gene42452.t1 MTR_4g118380 49.515 103 36 4 14 116 5 91 1.39e-11 65.1
MS.gene42452.t1 MTR_4g122860 36.156 307 133 10 15 313 68 319 1.40e-45 157
MS.gene42452.t1 MTR_4g116330 44.330 194 99 6 125 314 192 380 1.92e-44 155
MS.gene42452.t1 MTR_4g116330 50.943 106 36 4 15 119 21 111 5.11e-19 87.0
MS.gene42452.t1 MTR_4g118400 48.387 186 75 8 125 308 128 294 7.30e-44 152
MS.gene42452.t1 MTR_4g023120 32.895 380 161 14 17 314 3 370 1.08e-43 154
MS.gene42452.t1 MTR_5g070080 44.240 217 112 7 102 314 175 386 1.38e-43 154
MS.gene42452.t1 MTR_5g070080 70.690 58 17 0 16 73 9 66 4.69e-18 84.3
MS.gene42452.t1 MTR_3g034160 34.127 378 158 11 16 313 8 374 1.90e-41 148
MS.gene42452.t1 MTR_7g079400 44.279 201 99 6 124 314 140 337 2.21e-41 147
MS.gene42452.t1 MTR_4g116330 37.537 341 152 16 15 314 21 341 4.79e-41 146
MS.gene42452.t1 MTR_2g048580 31.700 347 178 11 16 314 7 342 1.08e-40 145
MS.gene42452.t1 MTR_3g034130 44.624 186 85 6 125 300 185 362 3.47e-40 144
MS.gene42452.t1 MTR_3g034130 49.565 115 43 3 16 130 8 107 1.11e-22 97.1
MS.gene42452.t1 MTR_6g463430 50.000 158 72 4 159 314 50 202 1.27e-39 138
MS.gene42452.t1 MTR_4g117530 34.839 310 121 10 12 314 18 253 1.99e-39 139
MS.gene42452.t1 MTR_8g102520 33.724 341 159 13 16 314 7 322 3.69e-39 140
MS.gene42452.t1 MTR_5g070088 44.444 189 98 5 127 312 199 383 4.50e-39 142
MS.gene42452.t1 MTR_5g070088 68.966 58 18 0 16 73 6 63 2.38e-17 82.0
MS.gene42452.t1 MTR_5g070130 43.655 197 100 8 127 314 183 377 1.28e-38 140
MS.gene42452.t1 MTR_5g070130 47.826 115 44 2 16 130 10 108 2.08e-18 85.1
MS.gene42452.t1 MTR_4g117780 42.791 215 112 8 104 313 158 366 1.54e-37 137
MS.gene42452.t1 MTR_4g117780 49.153 118 42 3 13 130 7 106 4.56e-21 92.8
MS.gene42452.t1 MTR_4g021785 41.546 207 101 8 116 314 161 355 9.35e-37 135
MS.gene42452.t1 MTR_4g117870 49.242 132 66 1 183 314 137 267 9.09e-35 127
MS.gene42452.t1 MTR_4g023190 43.005 193 87 9 130 312 178 357 2.66e-34 128
MS.gene42452.t1 MTR_4g023190 46.903 113 41 3 16 127 9 103 4.69e-14 72.4
MS.gene42452.t1 MTR_4g023150 46.012 163 75 7 158 312 201 358 1.11e-33 127
MS.gene42452.t1 MTR_4g023150 47.321 112 42 3 16 127 9 103 5.75e-14 72.0
MS.gene42452.t1 MTR_4g118360 51.145 131 53 5 190 314 1 126 2.92e-33 119
MS.gene42452.t1 MTR_4g023200 41.538 195 88 9 130 312 178 358 1.17e-31 121
MS.gene42452.t1 MTR_4g023200 47.423 97 34 3 31 127 24 103 1.30e-13 70.9
MS.gene42452.t1 MTR_7g079370 40.426 188 105 6 125 309 168 351 8.14e-30 116
MS.gene42452.t1 MTR_4g121580 31.638 354 171 13 7 304 1 339 3.46e-28 112
MS.gene42452.t1 MTR_5g023000 55.556 99 34 3 221 314 6 99 5.81e-27 102
MS.gene42452.t1 MTR_7g079420 43.210 162 81 7 159 314 988 1144 4.19e-26 108
MS.gene42452.t1 MTR_4g023440 51.282 117 40 3 15 130 16 116 9.32e-26 105
MS.gene42452.t1 MTR_8g098830 38.788 165 93 5 124 283 34 195 3.51e-24 98.6
MS.gene42452.t1 MTR_7g079450 40.288 139 79 3 176 314 3 137 1.17e-23 94.7
MS.gene42452.t1 MTR_7g117720 29.503 322 141 13 16 309 9 272 9.78e-22 92.8
MS.gene42452.t1 MTR_8g013010 45.614 114 47 3 16 129 53 151 9.63e-21 90.9
MS.gene42452.t1 MTR_8g013010 37.719 114 62 4 102 214 204 309 5.62e-14 71.6
MS.gene42452.t1 MTR_4g108820 29.008 262 142 9 14 243 39 288 3.96e-18 83.6
MS.gene42452.t1 MTR_4g109290 53.247 77 35 1 15 90 7 83 7.21e-18 80.5
MS.gene42452.t1 MTR_4g023430 60.000 70 28 0 4 73 28 97 3.44e-17 79.3
MS.gene42452.t1 MTR_4g023430 40.698 86 40 3 236 314 141 222 5.52e-11 61.6
MS.gene42452.t1 MTR_1g068875 26.351 296 142 10 17 244 4 291 1.29e-15 77.0
MS.gene42452.t1 MTR_8g013005 55.000 60 26 1 255 314 1 59 3.16e-14 66.6
MS.gene42452.t1 MTR_4g116340 29.565 230 106 8 3 180 22 247 3.24e-14 71.6
MS.gene42452.t1 MTR_4g114700 40.336 119 62 5 195 305 101 218 6.66e-14 70.5
MS.gene42452.t1 MTR_5g022420 27.526 287 156 10 4 241 15 298 1.06e-13 71.2
MS.gene42452.t1 MTR_5g008530 60.345 58 21 1 17 74 18 73 1.52e-13 65.1
MS.gene42452.t1 MTR_3g010870 27.386 241 145 11 6 239 26 243 1.00e-12 68.2
MS.gene42452.t1 MTR_1g097330 27.178 287 148 12 15 243 14 297 1.78e-12 67.8
MS.gene42452.t1 MTR_3g030240 26.241 282 143 9 13 239 33 304 7.58e-12 65.9
MS.gene42452.t1 MTR_4g023100 51.786 56 24 1 258 313 66 118 7.97e-12 62.0
MS.gene42452.t1 MTR_2g021150 39.252 107 44 4 13 110 10 104 1.44e-11 65.1
MS.gene42452.t1 MTR_5g023570 53.846 52 24 0 12 63 32 83 2.40e-11 61.2
MS.gene42452.t1 MTR_4g117430 37.500 104 59 2 115 217 57 155 3.43e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 74 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTAACCTCACTAAGATTT+TGG 0.254628 1.4:-46683911 None:intergenic
AGATTTACCGTCATTGTTTA+CGG 0.270467 1.4:+46684128 MS.gene42452:CDS
TGAAGATCAAAATGAGTTTC+CGG 0.279563 1.4:-46684198 None:intergenic
AAGATGAAACTGTGAATTTC+CGG 0.283140 1.4:-46684061 None:intergenic
TTAGTAGAGTCGGTCTTTAA+TGG 0.303396 1.4:+46684503 MS.gene42452:CDS
ACGAGGATACGGTTGATATA+TGG 0.318288 1.4:+46684699 MS.gene42452:CDS
TAGTAGAGTCGGTCTTTAAT+GGG 0.321567 1.4:+46684504 MS.gene42452:CDS
GTTCTACAGATTGTGGGTTA+TGG 0.322646 1.4:+46684639 MS.gene42452:CDS
GGCAGAGGTGGCGGAGCTTA+TGG 0.329362 1.4:+46683846 MS.gene42452:CDS
TTCTACAGATTGTGGGTTAT+GGG 0.335042 1.4:+46684640 MS.gene42452:CDS
TGTTGTTGCATTTGATTTAG+TGG 0.338010 1.4:+46684571 MS.gene42452:CDS
TATTGCAAAGATTCACGAAA+TGG 0.346680 1.4:+46684902 MS.gene42452:CDS
GAAAAGGCCTTACTACAAAA+AGG 0.347625 1.4:-46684467 None:intergenic
ACTACTTATGATACCGTTCA+TGG 0.348788 1.4:+46684773 MS.gene42452:CDS
CGTAGGATTCTGTTCGTAAC+CGG 0.359469 1.4:+46684042 MS.gene42452:CDS
AAATCTATAGATCGAAATTC+AGG 0.360952 1.4:-46684111 None:intergenic
AAACGAATAAGAGACTTAAC+TGG 0.393097 1.4:-46683931 None:intergenic
TGTGGGTTATGGGTATTTAG+AGG 0.393917 1.4:+46684650 MS.gene42452:CDS
TCTTTAATGGGGCTATTCAC+TGG 0.398766 1.4:+46684516 MS.gene42452:CDS
TCGTGAATCTTTGCAATAGT+AGG 0.398959 1.4:-46684897 None:intergenic
AATACAAAGTGCAGTCATCT+TGG 0.401037 1.4:+46684732 MS.gene42452:CDS
GAACGATAGTCAATATCATC+TGG 0.402023 1.4:-46684620 None:intergenic
GTTCCGATTGGCTATGTATA+CGG 0.408148 1.4:+46684925 MS.gene42452:CDS
TCTAAGTCTGTGGGCTATAG+TGG 0.408225 1.4:+46684676 MS.gene42452:CDS
CGAGGATACGGTTGATATAT+GGG 0.413196 1.4:+46684700 MS.gene42452:CDS
AAACTAGGGTTCAGTGGAAC+AGG 0.416096 1.4:-46684168 None:intergenic
GGCGGAGCTTATGGCGGAGG+TGG 0.420813 1.4:+46683855 MS.gene42452:CDS
TCTCATTGAGAGCTAATGAA+TGG 0.433657 1.4:+46684417 MS.gene42452:intron
GTTGGAACAGATTGCCGTAC+TGG 0.437052 1.4:+46684833 MS.gene42452:CDS
GGAGTAGCAGTTAAGAGTGT+TGG 0.441292 1.4:-46684090 None:intergenic
ATTAAAGACCGACTCTACTA+AGG 0.448181 1.4:-46684501 None:intergenic
GACTATCGTTCTACAGATTG+TGG 0.450288 1.4:+46684632 MS.gene42452:CDS
TAATGGGGCTATTCACTGGT+TGG 0.454880 1.4:+46684520 MS.gene42452:CDS
AAGACGCATGGCAGAGGTGG+CGG 0.474092 1.4:+46683837 None:intergenic
ATACAAAGTGCAGTCATCTT+GGG 0.475310 1.4:+46684733 MS.gene42452:CDS
GGCTATAGTGGACGAGGATA+CGG 0.477662 1.4:+46684688 MS.gene42452:CDS
TCAAATCCGTTTCTAAGTCA+TGG 0.484548 1.4:+46683953 MS.gene42452:CDS
ATTGCAAAGATTCACGAAAT+GGG 0.486500 1.4:+46684903 MS.gene42452:CDS
AGCAGTTAAGAGTGTTGGAG+AGG 0.495150 1.4:-46684085 None:intergenic
ACTATCGTTCTACAGATTGT+GGG 0.498654 1.4:+46684633 MS.gene42452:CDS
CTCATTGAGAGCTAATGAAT+GGG 0.499506 1.4:+46684418 MS.gene42452:intron
TAAGCTTCCTCATTGTCACT+AGG 0.504127 1.4:-46684965 None:intergenic
CAGAAGAAGACGCATGGCAG+AGG 0.505673 1.4:+46683831 None:intergenic
ATCAATTCATCAGGCAGATA+CGG 0.511263 1.4:-46683886 None:intergenic
TGTCTATCCCTTAGTAGAGT+CGG 0.518268 1.4:+46684493 MS.gene42452:CDS
GGTGGCGGAGCTTATGGCGG+AGG 0.518755 1.4:+46683852 MS.gene42452:CDS
TAAGGGATAGACAAAGGAAA+AGG 0.530326 1.4:-46684483 None:intergenic
AAGAAGACGCATGGCAGAGG+TGG 0.533136 1.4:+46683834 None:intergenic
TAGAGGATTTCTAAGTCTGT+GGG 0.535913 1.4:+46684667 MS.gene42452:CDS
TTAGAGGATTTCTAAGTCTG+TGG 0.535921 1.4:+46684666 MS.gene42452:CDS
TTGCATTTGATTTAGTGGAA+AGG 0.543544 1.4:+46684576 MS.gene42452:CDS
CTGCTGCCACACACATTCGT+AGG 0.548423 1.4:+46684025 MS.gene42452:CDS
TTCACGAAATGGGTTCCGAT+TGG 0.551409 1.4:+46684913 MS.gene42452:CDS
AAGCTTCCTCATTGTCACTA+GGG 0.552135 1.4:-46684964 None:intergenic
AGAAAACCATGACTTAGAAA+CGG 0.552831 1.4:-46683959 None:intergenic
AACAGATTGCCGTACTGGAT+TGG 0.563604 1.4:+46684838 MS.gene42452:CDS
ACTCCGTATACATAGCCAAT+CGG 0.564595 1.4:-46684928 None:intergenic
TTAAAGACCGACTCTACTAA+GGG 0.568134 1.4:-46684500 None:intergenic
AGAGGTGGCGGAGCTTATGG+CGG 0.592939 1.4:+46683849 MS.gene42452:CDS
AACGATAGTCAATATCATCT+GGG 0.594341 1.4:-46684619 None:intergenic
CATATCTCACCAATCCAGTA+CGG 0.602204 1.4:-46684847 None:intergenic
CTCTACTAAGGGATAGACAA+AGG 0.613219 1.4:-46684489 None:intergenic
TAGTCAATATCATCTGGGAG+AGG 0.613889 1.4:-46684614 None:intergenic
TCATCAGGCAGATACGGTGG+TGG 0.622257 1.4:-46683880 None:intergenic
AGTAGAGTCGGTCTTTAATG+GGG 0.625463 1.4:+46684505 MS.gene42452:CDS
TTCACTCCCTAGTGACAATG+AGG 0.626833 1.4:+46684958 MS.gene42452:CDS
TACAAGGGAAATGCCATGAA+CGG 0.628081 1.4:-46684786 None:intergenic
TTGGTGAGATATGATGAGGA+AGG 0.631695 1.4:+46684857 MS.gene42452:CDS
TGATCACCAAAATCTTAGTG+AGG 0.643902 1.4:+46683905 MS.gene42452:CDS
TCTGTGGGCTATAGTGGACG+AGG 0.648914 1.4:+46684682 MS.gene42452:CDS
CAGAATCCTACGAATGTGTG+TGG 0.660839 1.4:-46684031 None:intergenic
TCATCGTCCGTAAACAATGA+CGG 0.666236 1.4:-46684135 None:intergenic
AATTCATCAGGCAGATACGG+TGG 0.683856 1.4:-46683883 None:intergenic
TGGATTGGTGAGATATGATG+AGG 0.686473 1.4:+46684853 MS.gene42452:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAATGTTTTGTGGTTTT+GGG + chr1.4:46684333-46684352 MS.gene42452:intron 20.0%
!!! CATTTTGATCTTCAAATTAA+AGG + chr1.4:46684207-46684226 MS.gene42452:CDS 20.0%
!!! TATTTAATGTTTTGTGGTTT+TGG + chr1.4:46684332-46684351 MS.gene42452:intron 20.0%
! AAATCTATAGATCGAAATTC+AGG - chr1.4:46684114-46684133 None:intergenic 25.0%
! AACATTAAATATGCAACACT+AGG - chr1.4:46684323-46684342 None:intergenic 25.0%
! CTTGTTCAAAAGCTTATATA+TGG + chr1.4:46684258-46684277 MS.gene42452:intron 25.0%
!! GTTGCATATTTAATGTTTTG+TGG + chr1.4:46684326-46684345 MS.gene42452:intron 25.0%
AAACGAATAAGAGACTTAAC+TGG - chr1.4:46683934-46683953 None:intergenic 30.0%
AACGATAGTCAATATCATCT+GGG - chr1.4:46684622-46684641 None:intergenic 30.0%
AAGATGAAACTGTGAATTTC+CGG - chr1.4:46684064-46684083 None:intergenic 30.0%
ACAAAAAGTGGTGATATTGT+TGG + chr1.4:46684815-46684834 MS.gene42452:CDS 30.0%
AGAAAACCATGACTTAGAAA+CGG - chr1.4:46683962-46683981 None:intergenic 30.0%
AGATTTACCGTCATTGTTTA+CGG + chr1.4:46684128-46684147 MS.gene42452:CDS 30.0%
AGGTATTTGTCTATGAAATC+CGG - chr1.4:46684294-46684313 None:intergenic 30.0%
ATTGCAAAGATTCACGAAAT+GGG + chr1.4:46684903-46684922 MS.gene42452:CDS 30.0%
CAAATTAAAGGTTCATGTAG+AGG + chr1.4:46684219-46684238 MS.gene42452:intron 30.0%
TATTGCAAAGATTCACGAAA+TGG + chr1.4:46684902-46684921 MS.gene42452:CDS 30.0%
TCACTTTCGTATGATTACTT+GGG + chr1.4:46684389-46684408 MS.gene42452:intron 30.0%
TGAAGATCAAAATGAGTTTC+CGG - chr1.4:46684201-46684220 None:intergenic 30.0%
TTCACTTTCGTATGATTACT+TGG + chr1.4:46684388-46684407 MS.gene42452:intron 30.0%
! ACTTTTTGTGCAACATACAA+GGG - chr1.4:46684804-46684823 None:intergenic 30.0%
! TGTTGTTGCATTTGATTTAG+TGG + chr1.4:46684571-46684590 MS.gene42452:CDS 30.0%
! TTGCATTTGATTTAGTGGAA+AGG + chr1.4:46684576-46684595 MS.gene42452:CDS 30.0%
!! ATTTTGGTGATCAATTCATC+AGG - chr1.4:46683898-46683917 None:intergenic 30.0%
AATACAAAGTGCAGTCATCT+TGG + chr1.4:46684732-46684751 MS.gene42452:CDS 35.0%
ACTACTTATGATACCGTTCA+TGG + chr1.4:46684773-46684792 MS.gene42452:CDS 35.0%
ACTATCGTTCTACAGATTGT+GGG + chr1.4:46684633-46684652 MS.gene42452:CDS 35.0%
ATACAAAGTGCAGTCATCTT+GGG + chr1.4:46684733-46684752 MS.gene42452:CDS 35.0%
ATCAATTCATCAGGCAGATA+CGG - chr1.4:46683889-46683908 None:intergenic 35.0%
CACTTTCGTATGATTACTTG+GGG + chr1.4:46684390-46684409 MS.gene42452:intron 35.0%
CTCATTGAGAGCTAATGAAT+GGG + chr1.4:46684418-46684437 MS.gene42452:intron 35.0%
CTTGTATGTTGCACAAAAAG+TGG + chr1.4:46684803-46684822 MS.gene42452:CDS 35.0%
GAAAAGGCCTTACTACAAAA+AGG - chr1.4:46684470-46684489 None:intergenic 35.0%
GAACGATAGTCAATATCATC+TGG - chr1.4:46684623-46684642 None:intergenic 35.0%
TAAGGGATAGACAAAGGAAA+AGG - chr1.4:46684486-46684505 None:intergenic 35.0%
TAGAGGATTTCTAAGTCTGT+GGG + chr1.4:46684667-46684686 MS.gene42452:CDS 35.0%
TAGTAGAGTCGGTCTTTAAT+GGG + chr1.4:46684504-46684523 MS.gene42452:CDS 35.0%
TATATATGGAATCCATCCAC+CGG + chr1.4:46684272-46684291 MS.gene42452:intron 35.0%
TATTTGTCTATGAAATCCGG+TGG - chr1.4:46684291-46684310 None:intergenic 35.0%
TCAAATCCGTTTCTAAGTCA+TGG + chr1.4:46683953-46683972 MS.gene42452:CDS 35.0%
TCGTGAATCTTTGCAATAGT+AGG - chr1.4:46684900-46684919 None:intergenic 35.0%
TCTCATTGAGAGCTAATGAA+TGG + chr1.4:46684417-46684436 MS.gene42452:intron 35.0%
TGAAACCACCAAGTAATCAT+CGG - chr1.4:46684372-46684391 None:intergenic 35.0%
TGATCACCAAAATCTTAGTG+AGG + chr1.4:46683905-46683924 MS.gene42452:CDS 35.0%
TTAGAGGATTTCTAAGTCTG+TGG + chr1.4:46684666-46684685 MS.gene42452:CDS 35.0%
TTAGTAGAGTCGGTCTTTAA+TGG + chr1.4:46684503-46684522 MS.gene42452:CDS 35.0%
TTTCCGGAAGTGAAAAACTA+GGG - chr1.4:46684185-46684204 None:intergenic 35.0%
! ATTAAAGACCGACTCTACTA+AGG - chr1.4:46684504-46684523 None:intergenic 35.0%
! CGATTTGCCTTTTTGTAGTA+AGG + chr1.4:46684460-46684479 MS.gene42452:CDS 35.0%
! TGGTAACCTCACTAAGATTT+TGG - chr1.4:46683914-46683933 None:intergenic 35.0%
! TTAAAGACCGACTCTACTAA+GGG - chr1.4:46684503-46684522 None:intergenic 35.0%
! TTCTACAGATTGTGGGTTAT+GGG + chr1.4:46684640-46684659 MS.gene42452:CDS 35.0%
!! CACTTTTTGTGCAACATACA+AGG - chr1.4:46684805-46684824 None:intergenic 35.0%
AAGCTTCCTCATTGTCACTA+GGG - chr1.4:46684967-46684986 None:intergenic 40.0%
ACTCCGTATACATAGCCAAT+CGG - chr1.4:46684931-46684950 None:intergenic 40.0%
AGTAGAGTCGGTCTTTAATG+GGG + chr1.4:46684505-46684524 MS.gene42452:CDS 40.0%
AGTGAAAAACTAGGGTTCAG+TGG - chr1.4:46684177-46684196 None:intergenic 40.0%
CATATCTCACCAATCCAGTA+CGG - chr1.4:46684850-46684869 None:intergenic 40.0%
CTCTACTAAGGGATAGACAA+AGG - chr1.4:46684492-46684511 None:intergenic 40.0%
GACTATCGTTCTACAGATTG+TGG + chr1.4:46684632-46684651 MS.gene42452:CDS 40.0%
GTTTCCGGAAGTGAAAAACT+AGG - chr1.4:46684186-46684205 None:intergenic 40.0%
TAAGCTTCCTCATTGTCACT+AGG - chr1.4:46684968-46684987 None:intergenic 40.0%
TACAAGGGAAATGCCATGAA+CGG - chr1.4:46684789-46684808 None:intergenic 40.0%
TAGTCAATATCATCTGGGAG+AGG - chr1.4:46684617-46684636 None:intergenic 40.0%
TATGCAACACTAGGAGAGAA+AGG - chr1.4:46684314-46684333 None:intergenic 40.0%
TCATCGTCCGTAAACAATGA+CGG - chr1.4:46684138-46684157 None:intergenic 40.0%
TCTTTAATGGGGCTATTCAC+TGG + chr1.4:46684516-46684535 MS.gene42452:CDS 40.0%
TGTCTATCCCTTAGTAGAGT+CGG + chr1.4:46684493-46684512 MS.gene42452:CDS 40.0%
TTGGTGAGATATGATGAGGA+AGG + chr1.4:46684857-46684876 MS.gene42452:CDS 40.0%
! ACGAGGATACGGTTGATATA+TGG + chr1.4:46684699-46684718 MS.gene42452:CDS 40.0%
! CGAGGATACGGTTGATATAT+GGG + chr1.4:46684700-46684719 MS.gene42452:CDS 40.0%
! GTTCCGATTGGCTATGTATA+CGG + chr1.4:46684925-46684944 MS.gene42452:CDS 40.0%
! GTTCTACAGATTGTGGGTTA+TGG + chr1.4:46684639-46684658 MS.gene42452:CDS 40.0%
! TGTGGGTTATGGGTATTTAG+AGG + chr1.4:46684650-46684669 MS.gene42452:CDS 40.0%
!! GAACCCTAGTTTTTCACTTC+CGG + chr1.4:46684179-46684198 MS.gene42452:CDS 40.0%
!! TGGATTGGTGAGATATGATG+AGG + chr1.4:46684853-46684872 MS.gene42452:CDS 40.0%
AAACTAGGGTTCAGTGGAAC+AGG - chr1.4:46684171-46684190 None:intergenic 45.0%
AACAGATTGCCGTACTGGAT+TGG + chr1.4:46684838-46684857 MS.gene42452:CDS 45.0%
AATTCATCAGGCAGATACGG+TGG - chr1.4:46683886-46683905 None:intergenic 45.0%
CAGAATCCTACGAATGTGTG+TGG - chr1.4:46684034-46684053 None:intergenic 45.0%
CGAGTCAACCGATGATTACT+TGG + chr1.4:46684361-46684380 MS.gene42452:intron 45.0%
CGTAGGATTCTGTTCGTAAC+CGG + chr1.4:46684042-46684061 MS.gene42452:CDS 45.0%
GTCAACCGATGATTACTTGG+TGG + chr1.4:46684364-46684383 MS.gene42452:intron 45.0%
TAATGGGGCTATTCACTGGT+TGG + chr1.4:46684520-46684539 MS.gene42452:CDS 45.0%
TGTCTATGAAATCCGGTGGA+TGG - chr1.4:46684287-46684306 None:intergenic 45.0%
TTCACTCCCTAGTGACAATG+AGG + chr1.4:46684958-46684977 MS.gene42452:CDS 45.0%
! GGAGTAGCAGTTAAGAGTGT+TGG - chr1.4:46684093-46684112 None:intergenic 45.0%
! TCTAAGTCTGTGGGCTATAG+TGG + chr1.4:46684676-46684695 MS.gene42452:CDS 45.0%
! TTCACGAAATGGGTTCCGAT+TGG + chr1.4:46684913-46684932 MS.gene42452:CDS 45.0%
!! AGCAGTTAAGAGTGTTGGAG+AGG - chr1.4:46684088-46684107 None:intergenic 45.0%
GTTGGAACAGATTGCCGTAC+TGG + chr1.4:46684833-46684852 MS.gene42452:CDS 50.0%
!! GGCTATAGTGGACGAGGATA+CGG + chr1.4:46684688-46684707 MS.gene42452:CDS 50.0%
CTGCTGCCACACACATTCGT+AGG + chr1.4:46684025-46684044 MS.gene42452:CDS 55.0%
TCATCAGGCAGATACGGTGG+TGG - chr1.4:46683883-46683902 None:intergenic 55.0%
!! TCTGTGGGCTATAGTGGACG+AGG + chr1.4:46684682-46684701 MS.gene42452:CDS 55.0%
!! AGAGGTGGCGGAGCTTATGG+CGG + chr1.4:46683849-46683868 MS.gene42452:CDS 60.0%
!! GGCAGAGGTGGCGGAGCTTA+TGG + chr1.4:46683846-46683865 MS.gene42452:CDS 65.0%
! GGCGGAGCTTATGGCGGAGG+TGG + chr1.4:46683855-46683874 MS.gene42452:CDS 70.0%
!! GGTGGCGGAGCTTATGGCGG+AGG + chr1.4:46683852-46683871 MS.gene42452:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 46683844 46684988 46683844 ID=MS.gene42452
chr1.4 mRNA 46683844 46684988 46683844 ID=MS.gene42452.t1;Parent=MS.gene42452
chr1.4 exon 46683844 46684228 46683844 ID=MS.gene42452.t1.exon1;Parent=MS.gene42452.t1
chr1.4 CDS 46683844 46684228 46683844 ID=cds.MS.gene42452.t1;Parent=MS.gene42452.t1
chr1.4 exon 46684429 46684988 46684429 ID=MS.gene42452.t1.exon2;Parent=MS.gene42452.t1
chr1.4 CDS 46684429 46684988 46684429 ID=cds.MS.gene42452.t1;Parent=MS.gene42452.t1
Gene Sequence

>MS.gene42452

ATGGCAGAGGTGGCGGAGCTTATGGCGGAGGTGGATCCACCACCGTATCTGCCTGATGAATTGATCACCAAAATCTTAGTGAGGTTACCAGTTAAGTCTCTTATTCGTTTCAAATCCGTTTCTAAGTCATGGTTTTCTCTTATCTCTGATAATCACTTTGCAATTTCACATTTTCAAGTTACTGCTGCCACACACATTCGTAGGATTCTGTTCGTAACCGGAAATTCACAGTTTCATCTTTCCTCTCCAACACTCTTAACTGCTACTCCTGAATTTCGATCTATAGATTTACCGTCATTGTTTACGGACGATGATTATAATGAACCTGTTCCACTGAACCCTAGTTTTTCACTTCCGGAAACTCATTTTGATCTTCAAATTAAAGGTTCATGTAGAGGTTTATATTTTTGCACACTTGTTCAAAAGCTTATATATGGAATCCATCCACCGGATTTCATAGACAAATACCTTTCTCTCCTAGTGTTGCATATTTAATGTTTTGTGGTTTTGGGTATGACGAGTCAACCGATGATTACTTGGTGGTTTCACTTTCGTATGATTACTTGGGGTTTTTCTCATTGAGAGCTAATGAATGGGAAGAAATCGCAGATACTGTCGATTTGCCTTTTTGTAGTAAGGCCTTTTCCTTTGTCTATCCCTTAGTAGAGTCGGTCTTTAATGGGGCTATTCACTGGTTGGCTTTAAATCTTGATACATGTGACTATCTTGTTGTTGCATTTGATTTAGTGGAAAGGAAACTTGTAGAGATTCCTCTCCCAGATGATATTGACTATCGTTCTACAGATTGTGGGTTATGGGTATTTAGAGGATTTCTAAGTCTGTGGGCTATAGTGGACGAGGATACGGTTGATATATGGGTAATGAAAGAATACAAAGTGCAGTCATCTTGGGCTAAAACTCTTGTTCTTACTACTTATGATACCGTTCATGGCATTTCCCTTGTATGTTGCACAAAAAGTGGTGATATTGTTGGAACAGATTGCCGTACTGGATTGGTGAGATATGATGAGGAAGGAGAGTTTTTAGAGCATACCTACTATTGCAAAGATTCACGAAATGGGTTCCGATTGGCTATGTATACGGAGTCTTTGCTTTCACTCCCTAGTGACAATGAGGAAGCTTAA
Protein sequence

>MS.gene42452.t1

MAEVAELMAEVDPPPYLPDELITKILVRLPVKSLIRFKSVSKSWFSLISDNHFAISHFQVTAATHIRRILFVTGNSQFHLSSPTLLTATPEFRSIDLPSLFTDDDYNEPVPLNPSFSLPETHFDLQIKANEWEEIADTVDLPFCSKAFSFVYPLVESVFNGAIHWLALNLDTCDYLVVAFDLVERKLVEIPLPDDIDYRSTDCGLWVFRGFLSLWAIVDEDTVDIWVMKEYKVQSSWAKTLVLTTYDTVHGISLVCCTKSGDIVGTDCRTGLVRYDEEGEFLEHTYYCKDSRNGFRLAMYTESLLSLPSDNEEA