AlfalfaGEDB | MS.gene021553

M. sativa cultivar XinJiangDaYe / MS.gene021553

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF07734.16

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021553.t1	XP_003588608.1	94.6	315	14	1	1	315	68	379	2.60E-184	654.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021553.t1	G7I558	94.6	315	14	1	1	315	68	379	1.9e-184	654.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene033432	MS.gene021553	PPI
MS.gene021553	MS.gene058669	PPI
MS.gene021553	MS.gene066120	PPI
MS.gene021553	MS.gene51192	PPI
MS.gene59639	MS.gene021553	PPI
MS.gene021553	MS.gene041489	PPI
MS.gene066635	MS.gene021553	PPI
MS.gene021553	MS.gene36704	PPI
MS.gene021553	MS.gene034688	PPI
MS.gene021553	MS.gene24213	PPI
MS.gene021553	MS.gene31637	PPI
MS.gene010758	MS.gene021553	PPI
MS.gene021553	MS.gene033079	PPI
MS.gene87586	MS.gene021553	PPI
MS.gene021553	MS.gene034677	PPI
MS.gene021553	MS.gene055694	PPI
MS.gene021553	MS.gene035238	PPI
MS.gene50326	MS.gene021553	PPI
MS.gene021553	MS.gene064114	PPI
MS.gene021553	MS.gene87584	PPI
MS.gene50339	MS.gene021553	PPI
MS.gene021553	MS.gene58315	PPI
MS.gene021553	MS.gene80610	PPI
MS.gene021553	MS.gene90743	PPI
MS.gene42452	MS.gene021553	PPI
MS.gene063414	MS.gene021553	PPI
MS.gene021553	MS.gene85454	PPI
MS.gene021553	MS.gene064112	PPI
MS.gene021553	MS.gene041391	PPI
MS.gene021553	MS.gene033443	PPI
MS.gene021553	MS.gene060367	PPI
MS.gene57526	MS.gene021553	PPI
MS.gene021553	MS.gene57536	PPI
MS.gene021553	MS.gene51200	PPI
MS.gene051820	MS.gene021553	PPI
MS.gene26957	MS.gene021553	PPI
MS.gene97996	MS.gene021553	PPI
MS.gene036582	MS.gene021553	PPI
MS.gene27021	MS.gene021553	PPI
MS.gene021553	MS.gene44887	PPI
MS.gene021553	MS.gene058701	PPI
MS.gene58320	MS.gene021553	PPI
MS.gene26101	MS.gene021553	PPI
MS.gene27283	MS.gene021553	PPI
MS.gene021553	MS.gene87554	PPI
MS.gene021553	MS.gene009891	PPI
MS.gene021553	MS.gene064083	PPI
MS.gene021553	MS.gene048193	PPI
MS.gene58781	MS.gene021553	PPI
MS.gene021553	MS.gene58783	PPI
MS.gene021553	MS.gene024420	PPI
MS.gene011106	MS.gene021553	PPI
MS.gene021553	MS.gene57533	PPI
MS.gene021553	MS.gene024008	PPI
MS.gene021553	MS.gene50337	PPI
MS.gene44886	MS.gene021553	PPI
MS.gene87562	MS.gene021553	PPI
MS.gene021553	MS.gene54541	PPI
MS.gene021553	MS.gene39265	PPI
MS.gene021553	MS.gene041393	PPI
MS.gene40904	MS.gene021553	PPI
MS.gene021553	MS.gene060368	PPI
MS.gene021553	MS.gene053299	PPI
MS.gene021553	MS.gene28758	PPI
MS.gene021553	MS.gene044429	PPI
MS.gene021553	MS.gene42451	PPI
MS.gene000035	MS.gene021553	PPI
MS.gene87569	MS.gene021553	PPI
MS.gene021553	MS.gene50304	PPI
MS.gene87573	MS.gene021553	PPI
MS.gene041491	MS.gene021553	PPI
MS.gene021553	MS.gene019503	PPI
MS.gene019504	MS.gene021553	PPI
MS.gene059096	MS.gene021553	PPI
MS.gene57528	MS.gene021553	PPI
MS.gene021553	MS.gene033431	PPI
MS.gene006711	MS.gene021553	PPI
MS.gene58716	MS.gene021553	PPI
MS.gene033444	MS.gene021553	PPI
MS.gene019505	MS.gene021553	PPI
MS.gene021553	MS.gene58319	PPI
MS.gene021553	MS.gene034762	PPI
MS.gene021553	MS.gene59943	PPI
MS.gene045476	MS.gene021553	PPI
MS.gene58785	MS.gene021553	PPI
MS.gene034690	MS.gene021553	PPI
MS.gene26949	MS.gene021553	PPI
MS.gene021553	MS.gene035262	PPI
MS.gene036760	MS.gene021553	PPI
MS.gene77857	MS.gene021553	PPI
MS.gene021553	MS.gene028390	PPI
MS.gene57527	MS.gene021553	PPI
MS.gene021553	MS.gene40878	PPI
MS.gene51191	MS.gene021553	PPI
MS.gene021553	MS.gene44428	PPI
MS.gene021553	MS.gene96407	PPI
MS.gene033426	MS.gene021553	PPI
MS.gene021553	MS.gene035235	PPI
MS.gene021553	MS.gene058703	PPI
MS.gene50298	MS.gene021553	PPI
MS.gene021553	MS.gene57528	PPI
MS.gene67687	MS.gene021553	PPI
MS.gene021553	MS.gene024000	PPI
MS.gene021553	MS.gene012215	PPI
MS.gene063670	MS.gene021553	PPI
MS.gene021553	MS.gene50297	PPI
MS.gene021553	MS.gene059101	PPI
MS.gene71159	MS.gene021553	PPI
MS.gene019506	MS.gene021553	PPI
MS.gene021553	MS.gene22715	PPI
MS.gene021553	MS.gene58316	PPI
MS.gene058692	MS.gene021553	PPI
MS.gene021553	MS.gene033430	PPI
MS.gene021553	MS.gene58321	PPI
MS.gene69309	MS.gene021553	PPI
MS.gene021553	MS.gene87564	PPI
MS.gene63658	MS.gene021553	PPI
MS.gene033081	MS.gene021553	PPI
MS.gene021553	MS.gene36595	PPI
MS.gene021553	MS.gene024004	PPI
MS.gene021553	MS.gene045140	PPI
MS.gene021553	MS.gene061240	PPI
MS.gene034686	MS.gene021553	PPI
MS.gene070461	MS.gene021553	PPI
MS.gene021553	MS.gene041473	PPI
MS.gene021553	MS.gene50311	PPI
MS.gene021553	MS.gene058989	PPI
MS.gene021553	MS.gene036556	PPI
MS.gene021553	MS.gene57538	PPI
MS.gene021553	MS.gene041468	PPI
MS.gene021553	MS.gene058693	PPI
MS.gene021553	MS.gene27319	PPI
MS.gene021553	MS.gene015089	PPI
MS.gene87563	MS.gene021553	PPI
MS.gene021553	MS.gene041395	PPI
MS.gene021553	MS.gene42447	PPI
MS.gene021553	MS.gene51189	PPI
MS.gene041475	MS.gene021553	PPI
MS.gene021553	MS.gene046958	PPI
MS.gene81242	MS.gene021553	PPI
MS.gene021553	MS.gene24286	PPI
MS.gene64203	MS.gene021553	PPI
MS.gene021553	MS.gene044425	PPI
MS.gene42444	MS.gene021553	PPI
MS.gene51202	MS.gene021553	PPI
MS.gene021553	MS.gene40988	PPI
MS.gene021553	MS.gene24173	PPI
MS.gene021553	MS.gene036584	PPI
MS.gene021553	MS.gene036662	PPI
MS.gene26829	MS.gene021553	PPI
MS.gene064104	MS.gene021553	PPI
MS.gene021553	MS.gene035261	PPI
MS.gene021553	MS.gene023999	PPI
MS.gene021553	MS.gene69307	PPI
MS.gene54049	MS.gene021553	PPI
MS.gene43789	MS.gene021553	PPI
MS.gene021553	MS.gene036581	PPI
MS.gene021553	MS.gene019507	PPI
MS.gene072177	MS.gene021553	PPI
MS.gene58722	MS.gene021553	PPI
MS.gene064091	MS.gene021553	PPI
MS.gene021553	MS.gene000036	PPI
MS.gene021553	MS.gene50320	PPI
MS.gene021553	MS.gene58314	PPI
MS.gene50307	MS.gene021553	PPI
MS.gene021553	MS.gene87557	PPI
MS.gene43796	MS.gene021553	PPI
MS.gene021553	MS.gene51199	PPI
MS.gene021553	MS.gene035263	PPI
MS.gene021553	MS.gene67501	PPI
MS.gene021553	MS.gene96406	PPI
MS.gene58312	MS.gene021553	PPI
MS.gene021553	MS.gene27285	PPI
MS.gene36704	MS.gene021553	PPI
MS.gene021553	MS.gene77858	PPI
MS.gene021553	MS.gene51201	PPI
MS.gene021553	MS.gene50336	PPI
MS.gene021553	MS.gene57526	PPI
MS.gene58313	MS.gene021553	PPI
MS.gene021553	MS.gene77704	PPI
MS.gene066622	MS.gene021553	PPI
MS.gene44887	MS.gene021553	PPI
MS.gene44883	MS.gene021553	PPI
MS.gene021553	MS.gene047279	PPI
MS.gene021553	MS.gene060370	PPI
MS.gene021553	MS.gene50305	PPI
MS.gene021553	MS.gene024002	PPI
MS.gene036583	MS.gene021553	PPI
MS.gene021553	MS.gene032969	PPI
MS.gene88780	MS.gene021553	PPI
MS.gene87588	MS.gene021553	PPI
MS.gene021553	MS.gene68890	PPI
MS.gene017412	MS.gene021553	PPI
MS.gene021553	MS.gene42445	PPI
MS.gene021553	MS.gene86273	PPI
MS.gene021553	MS.gene26830	PPI
MS.gene96448	MS.gene021553	PPI
MS.gene021553	MS.gene40985	PPI
MS.gene021553	MS.gene038756	PPI
MS.gene041392	MS.gene021553	PPI
MS.gene021553	MS.gene51207	PPI
MS.gene021553	MS.gene63657	PPI
MS.gene069075	MS.gene021553	PPI
MS.gene021553	MS.gene059157	PPI
MS.gene021553	MS.gene023996	PPI
MS.gene021553	MS.gene50301	PPI
MS.gene031591	MS.gene021553	PPI
MS.gene021553	MS.gene070462	PPI
MS.gene021553	MS.gene54049	PPI
MS.gene021553	MS.gene031590	PPI
MS.gene041388	MS.gene021553	PPI
MS.gene021553	MS.gene066623	PPI
MS.gene021553	MS.gene064086	PPI
MS.gene96126	MS.gene021553	PPI
MS.gene019503	MS.gene021553	PPI
MS.gene021553	MS.gene035234	PPI
MS.gene021553	MS.gene064090	PPI
MS.gene016524	MS.gene021553	PPI
MS.gene87559	MS.gene021553	PPI
MS.gene50304	MS.gene021553	PPI
MS.gene021553	MS.gene90742	PPI
MS.gene021553	MS.gene24212	PPI
MS.gene021553	MS.gene066639	PPI
MS.gene021553	MS.gene50332	PPI
MS.gene021553	MS.gene024979	PPI
MS.gene021553	MS.gene64203	PPI
MS.gene31587	MS.gene021553	PPI
MS.gene041393	MS.gene021553	PPI
MS.gene033441	MS.gene021553	PPI
MS.gene021553	MS.gene24826	PPI
MS.gene021553	MS.gene43790	PPI
MS.gene021553	MS.gene032970	PPI
MS.gene063826	MS.gene021553	PPI
MS.gene84698	MS.gene021553	PPI
MS.gene44892	MS.gene021553	PPI
MS.gene021553	MS.gene40982	PPI
MS.gene58239	MS.gene021553	PPI
MS.gene021553	MS.gene59637	PPI
MS.gene066641	MS.gene021553	PPI
MS.gene000038	MS.gene021553	PPI
MS.gene021553	MS.gene27022	PPI
MS.gene57531	MS.gene021553	PPI
MS.gene021553	MS.gene88416	PPI
MS.gene064111	MS.gene021553	PPI
MS.gene021553	MS.gene57530	PPI
MS.gene39262	MS.gene021553	PPI
MS.gene053256	MS.gene021553	PPI
MS.gene021553	MS.gene87585	PPI
MS.gene025887	MS.gene021553	PPI
MS.gene021553	MS.gene024009	PPI
MS.gene75875	MS.gene021553	PPI
MS.gene021553	MS.gene036599	PPI
MS.gene021553	MS.gene40887	PPI
MS.gene041470	MS.gene021553	PPI
MS.gene058694	MS.gene021553	PPI
MS.gene021553	MS.gene42444	PPI
MS.gene021553	MS.gene006705	PPI
MS.gene021553	MS.gene061241	PPI
MS.gene021553	MS.gene035237	PPI
MS.gene015089	MS.gene021553	PPI
MS.gene006710	MS.gene021553	PPI
MS.gene021553	MS.gene51188	PPI
MS.gene021553	MS.gene033875	PPI
MS.gene44885	MS.gene021553	PPI
MS.gene011679	MS.gene021553	PPI
MS.gene021553	MS.gene38220	PPI
MS.gene021553	MS.gene40986	PPI
MS.gene021553	MS.gene50309	PPI
MS.gene64001	MS.gene021553	PPI
MS.gene021553	MS.gene041394	PPI
MS.gene57533	MS.gene021553	PPI
MS.gene021553	MS.gene03060	PPI
MS.gene021553	MS.gene033440	PPI
MS.gene021553	MS.gene036664	PPI
MS.gene021553	MS.gene024011	PPI
MS.gene032970	MS.gene021553	PPI
MS.gene021553	MS.gene053257	PPI
MS.gene021553	MS.gene58241	PPI
MS.gene021553	MS.gene064109	PPI
MS.gene021553	MS.gene058696	PPI
MS.gene77856	MS.gene021553	PPI
MS.gene021553	MS.gene009893	PPI
MS.gene021553	MS.gene045475	PPI
MS.gene021553	MS.gene85043	PPI
MS.gene021553	MS.gene062698	PPI
MS.gene63655	MS.gene021553	PPI
MS.gene060366	MS.gene021553	PPI
MS.gene021553	MS.gene033083	PPI
MS.gene41046	MS.gene021553	PPI
MS.gene57529	MS.gene021553	PPI
MS.gene021553	MS.gene40886	PPI
MS.gene80884	MS.gene021553	PPI
MS.gene021553	MS.gene033081	PPI
MS.gene021553	MS.gene036663	PPI
MS.gene021553	MS.gene68580	PPI
MS.gene009883	MS.gene021553	PPI
MS.gene021553	MS.gene57525	PPI
MS.gene40902	MS.gene021553	PPI
MS.gene033427	MS.gene021553	PPI
MS.gene021553	MS.gene030114	PPI
MS.gene021553	MS.gene045473	PPI
MS.gene041474	MS.gene021553	PPI
MS.gene021553	MS.gene88774	PPI
MS.gene021553	MS.gene045474	PPI
MS.gene27020	MS.gene021553	PPI
MS.gene021553	MS.gene036558	PPI
MS.gene066620	MS.gene021553	PPI
MS.gene035236	MS.gene021553	PPI
MS.gene021553	MS.gene27051	PPI
MS.gene021553	MS.gene40984	PPI
MS.gene021553	MS.gene064108	PPI
MS.gene51208	MS.gene021553	PPI
MS.gene021553	MS.gene016220	PPI
MS.gene62398	MS.gene021553	PPI
MS.gene021553	MS.gene24208	PPI
MS.gene021553	MS.gene58317	PPI
MS.gene021553	MS.gene063670	PPI
MS.gene60027	MS.gene021553	PPI
MS.gene045475	MS.gene021553	PPI
MS.gene88776	MS.gene021553	PPI
MS.gene35068	MS.gene021553	PPI
MS.gene041390	MS.gene021553	PPI
MS.gene90744	MS.gene021553	PPI
MS.gene51204	MS.gene021553	PPI
MS.gene92376	MS.gene021553	PPI
MS.gene036557	MS.gene021553	PPI
MS.gene50329	MS.gene021553	PPI
MS.gene021553	MS.gene57531	PPI
MS.gene021553	MS.gene58240	PPI
MS.gene31637	MS.gene021553	PPI
MS.gene021553	MS.gene27284	PPI
MS.gene021553	MS.gene063472	PPI
MS.gene57537	MS.gene021553	PPI
MS.gene021553	MS.gene57717	PPI
MS.gene021553	MS.gene034680	PPI
MS.gene021553	MS.gene27021	PPI
MS.gene021553	MS.gene48221	PPI
MS.gene059156	MS.gene021553	PPI
MS.gene021553	MS.gene044563	PPI
MS.gene021553	MS.gene50327	PPI
MS.gene021553	MS.gene066626	PPI
MS.gene82082	MS.gene021553	PPI
MS.gene021553	MS.gene063474	PPI
MS.gene021553	MS.gene51190	PPI
MS.gene50306	MS.gene021553	PPI
MS.gene021553	MS.gene71159	PPI
MS.gene021553	MS.gene044426	PPI
MS.gene021553	MS.gene034681	PPI
MS.gene021553	MS.gene57532	PPI
MS.gene021553	MS.gene003076	PPI
MS.gene57535	MS.gene021553	PPI
MS.gene021553	MS.gene033442	PPI
MS.gene021553	MS.gene009892	PPI
MS.gene87200	MS.gene021553	PPI
MS.gene58311	MS.gene021553	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021553.t1	MTR_1g009110	94.603	315	14	1	1	315	68	379	0.0	623
MS.gene021553.t1	MTR_1g022105	57.770	296	73	7	1	294	75	320	5.10e-104	307
MS.gene021553.t1	MTR_1g023400	45.513	312	140	11	13	314	61	352	8.09e-75	234
MS.gene021553.t1	MTR_4g080200	43.689	309	155	11	13	314	53	349	9.06e-66	210
MS.gene021553.t1	MTR_1g022200	44.969	318	144	13	11	315	71	370	1.20e-64	208
MS.gene021553.t1	MTR_1g037540	41.892	296	147	12	36	314	113	400	6.67e-57	189
MS.gene021553.t1	MTR_1g023430	51.493	134	64	1	182	315	41	173	6.47e-39	135
MS.gene021553.t1	MTR_1g024125	52.727	110	48	2	186	291	38	147	1.09e-31	116
MS.gene021553.t1	MTR_1g008000	33.333	285	120	17	47	315	39	269	3.68e-19	85.9
MS.gene021553.t1	MTR_8g046310	28.111	217	128	11	55	258	118	319	6.33e-13	68.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 90 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGAATTACTATAGATGTTTA+TGG	0.171813	1.4:-10149702	MS.gene021553:CDS
TGGCCCAATGTTGTACATTT+TGG	0.236356	1.4:+10149855	None:intergenic
GGGCTCTCTTGCTTATGTTT+TGG	0.239786	1.4:-10149938	MS.gene021553:CDS
CATGTTGCATAAGTGATTTC+TGG	0.246825	1.4:-10149822	MS.gene021553:CDS
TACTTCTGCTCCCTCTTTCC+TGG	0.291167	1.4:-10150489	MS.gene021553:CDS
CGAACTGGGATGCGGTTAAA+TGG	0.329209	1.4:+10150135	None:intergenic
GAATTACTATAGATGTTTAT+GGG	0.331663	1.4:-10149701	MS.gene021553:CDS
GTCCGATCCAGTTGGAAATC+TGG	0.346576	1.4:-10149900	MS.gene021553:CDS
AAATATGATGATTCCCTGTA+TGG	0.359503	1.4:-10150306	MS.gene021553:CDS
GGTGGACCTGTTTAGTTGTT+GGG	0.363221	1.4:+10150361	None:intergenic
AAGGATGGCGATCAAGTCTT+TGG	0.371759	1.4:-10149799	MS.gene021553:CDS
ATTTATCACAGACCCATTGA+TGG	0.376040	1.4:-10150582	MS.gene021553:CDS
TTGTTAACTGTGTTTATCAT+TGG	0.385806	1.4:-10150089	MS.gene021553:CDS
CCAGTTGGAAATCTGGATTA+TGG	0.392026	1.4:-10149893	MS.gene021553:CDS
CTCTTGGTCAATTGATCCTA+TGG	0.400602	1.4:-10150386	MS.gene021553:CDS
ATATGTTTCGATTCGGTCTA+CGG	0.400923	1.4:+10150458	None:intergenic
ATGCAACATGTCCACGGAAC+TGG	0.401019	1.4:+10149835	None:intergenic
AATGGTGGAGGGTGATGGAC+AGG	0.404814	1.4:+10150153	None:intergenic
CGGTCTACGGATTGATTACC+AGG	0.408180	1.4:+10150471	None:intergenic
AGGTGGACCTGTTTAGTTGT+TGG	0.412563	1.4:+10150360	None:intergenic
TATGATGGATAGTATCGAAC+TGG	0.414566	1.4:+10150120	None:intergenic
GAGAAGATGATTATTCCTTC+AGG	0.423139	1.4:-10150213	MS.gene021553:CDS
TGATAAACACAGTTAACAAC+CGG	0.423981	1.4:+10150093	None:intergenic
CTCTCCTGTGACGGTGGCGA+CGG	0.438612	1.4:-10150534	MS.gene021553:CDS
CAAGTCTTTGGAGGAAAGGT+TGG	0.443153	1.4:-10149787	MS.gene021553:CDS
GTTTAGTTGTTGGGTTCCAT+AGG	0.448822	1.4:+10150370	None:intergenic
ATGGAACCCAACAACTAAAC+AGG	0.452752	1.4:-10150367	MS.gene021553:CDS
CGAAAACATTGCTGAGATCA+AGG	0.453867	1.4:-10149959	MS.gene021553:CDS
AATTGCCATATGTTTCGATT+CGG	0.459622	1.4:+10150451	None:intergenic
GCCTCCGTCGCCACCGTCAC+AGG	0.460383	1.4:+10150530	None:intergenic
ACAGGAGAGAAGAGTGATGT+AGG	0.461686	1.4:+10150548	None:intergenic
AGAATGTTTAACGTGCCGAC+AGG	0.462860	1.4:+10149984	None:intergenic
GGACCAAAATGTACAACATT+GGG	0.464466	1.4:-10149858	MS.gene021553:CDS
ATTTCCAACTGGATCGGACT+AGG	0.486938	1.4:+10149904	None:intergenic
TCCTGTGACGGTGGCGACGG+AGG	0.500634	1.4:-10150531	MS.gene021553:CDS
GGGAGGTTTGAATCCATCAA+TGG	0.500733	1.4:+10150569	None:intergenic
TGGCGACGGAGGCGAGGAGT+TGG	0.501551	1.4:-10150520	MS.gene021553:CDS
CCATAATCCAGATTTCCAAC+TGG	0.510407	1.4:+10149893	None:intergenic
ATGATCTAAGCACTAAATCA+TGG	0.514952	1.4:-10150179	MS.gene021553:CDS
GAGTGACAGAATGAGGGTGC+AGG	0.515232	1.4:+10150330	None:intergenic
AGGAAAGGTTGGAAAGCTGC+TGG	0.518994	1.4:-10149776	MS.gene021553:CDS
CAGGAGAGAAGAGTGATGTA+GGG	0.521709	1.4:+10150549	None:intergenic
GTAGACCGAATCGAAACATA+TGG	0.532232	1.4:-10150456	MS.gene021553:CDS
CGGATTGATTACCAGGAAAG+AGG	0.534555	1.4:+10150478	None:intergenic
CGATCAAGTCTTTGGAGGAA+AGG	0.536754	1.4:-10149791	MS.gene021553:CDS
TCTGGATTATGGATCAGAAC+CGG	0.536974	1.4:-10149882	MS.gene021553:CDS
TAAATGCACAGAAACCATAC+AGG	0.538550	1.4:+10150292	None:intergenic
ATATTTAGAGTGACAGAATG+AGG	0.539503	1.4:+10150323	None:intergenic
TGGACCAAAATGTACAACAT+TGG	0.539844	1.4:-10149859	MS.gene021553:CDS
CTGGCTTCATATGACGATCA+AGG	0.540639	1.4:-10149757	MS.gene021553:CDS
GGTTAAATGGTGGAGGGTGA+TGG	0.542091	1.4:+10150148	None:intergenic
TGAGGTGAGCTAGGTTGACA+AGG	0.543773	1.4:+10149651	None:intergenic
TTAACAACCGGGGTATATGA+TGG	0.545027	1.4:+10150105	None:intergenic
TGACGGTGGCGACGGAGGCG+AGG	0.546343	1.4:-10150526	MS.gene021553:CDS
GGAGGTTTGAATCCATCAAT+GGG	0.551734	1.4:+10150570	None:intergenic
ACTCTTCTCTCCTGTGACGG+TGG	0.556337	1.4:-10150540	MS.gene021553:CDS
AATTACTATAGATGTTTATG+GGG	0.557410	1.4:-10149700	MS.gene021553:CDS
GAGAGAAGAGTGATGTAGGG+AGG	0.559362	1.4:+10150552	None:intergenic
ATCACTCTTCTCTCCTGTGA+CGG	0.564386	1.4:-10150543	MS.gene021553:CDS
GATGGCGATCAAGTCTTTGG+AGG	0.568823	1.4:-10149796	MS.gene021553:CDS
GAAAACATTGCTGAGATCAA+GGG	0.570059	1.4:-10149958	MS.gene021553:CDS
ATCCAGATTTCCAACTGGAT+CGG	0.573766	1.4:+10149898	None:intergenic
AGTGACAGAATGAGGGTGCA+GGG	0.576394	1.4:+10150331	None:intergenic
ATAAGTGATTTCTGGAAGGA+TGG	0.580005	1.4:-10149814	MS.gene021553:CDS
GCCGACAGGGAGCTTTGAGT+TGG	0.583956	1.4:+10149998	None:intergenic
GAAACATATGGCAATTGCAA+TGG	0.588891	1.4:-10150444	MS.gene021553:CDS
GATAGTATCGAACTGGGATG+CGG	0.590112	1.4:+10150127	None:intergenic
TCATACACTTCTGCGCCTGA+AGG	0.591235	1.4:+10150198	None:intergenic
GGGATGCGGTTAAATGGTGG+AGG	0.595710	1.4:+10150141	None:intergenic
GGATTGATTACCAGGAAAGA+GGG	0.601607	1.4:+10150479	None:intergenic
ATGGTGGAGGGTGATGGACA+GGG	0.604225	1.4:+10150154	None:intergenic
TCATCCTAGTCCGATCCAGT+TGG	0.605888	1.4:-10149908	MS.gene021553:CDS
ACAACATTGGGCCAGTTCCG+TGG	0.611189	1.4:-10149846	MS.gene021553:CDS
ACTGGGATGCGGTTAAATGG+TGG	0.612497	1.4:+10150138	None:intergenic
TGGTGGAGGGTGATGGACAG+GGG	0.617953	1.4:+10150155	None:intergenic
TCACTTATGCAACATGTCCA+CGG	0.629494	1.4:+10149829	None:intergenic
GAATGTTTAACGTGCCGACA+GGG	0.630721	1.4:+10149985	None:intergenic
TATTTAGAGTGACAGAATGA+GGG	0.632064	1.4:+10150324	None:intergenic
GAGGTGAGCTAGGTTGACAA+GGG	0.632872	1.4:+10149652	None:intergenic
TGACAGAATGAGGGTGCAGG+GGG	0.633633	1.4:+10150333	None:intergenic
GTGACAGAATGAGGGTGCAG+GGG	0.639675	1.4:+10150332	None:intergenic
GATAAACACAGTTAACAACC+GGG	0.639807	1.4:+10150094	None:intergenic
GGATTATGGATCAGAACCGG+TGG	0.658826	1.4:-10149879	MS.gene021553:CDS
ATGATGGATAGTATCGAACT+GGG	0.666209	1.4:+10150121	None:intergenic
TTGCATAAGTGATTTCTGGA+AGG	0.673241	1.4:-10149818	MS.gene021553:CDS
ATACTATCCATCATATACCC+CGG	0.677642	1.4:-10150112	MS.gene021553:CDS
GGATGCGGTTAAATGGTGGA+GGG	0.686361	1.4:+10150142	None:intergenic
ACCAACTCAAAGCTCCCTGT+CGG	0.686762	1.4:-10149999	MS.gene021553:CDS
AAATGCACAGAAACCATACA+GGG	0.706345	1.4:+10150293	None:intergenic
ATAAACACAGTTAACAACCG+GGG	0.720377	1.4:+10150095	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATTACTATAGATGTTTATG+GGG	-	chr1.4:10150545-10150564	MS.gene021553:CDS	20.0%
!!	GAATTACTATAGATGTTTAT+GGG	-	chr1.4:10150544-10150563	MS.gene021553:CDS	20.0%
!!	TGAATTACTATAGATGTTTA+TGG	-	chr1.4:10150543-10150562	MS.gene021553:CDS	20.0%
!!!	TCTTCTTAAAAGCTTTTTAT+AGG	-	chr1.4:10149829-10149848	MS.gene021553:CDS	20.0%
!	TTGTTAACTGTGTTTATCAT+TGG	-	chr1.4:10150156-10150175	MS.gene021553:CDS	25.0%
!!	TTTTATAGGAATTCAACTCT+TGG	-	chr1.4:10149843-10149862	MS.gene021553:CDS	25.0%
	AAATATGATGATTCCCTGTA+TGG	-	chr1.4:10149939-10149958	MS.gene021553:CDS	30.0%
	AATTGCCATATGTTTCGATT+CGG	+	chr1.4:10149797-10149816	None:intergenic	30.0%
	ATGATCTAAGCACTAAATCA+TGG	-	chr1.4:10150066-10150085	MS.gene021553:CDS	30.0%
	TGATAAACACAGTTAACAAC+CGG	+	chr1.4:10150155-10150174	None:intergenic	30.0%
!	ATATTTAGAGTGACAGAATG+AGG	+	chr1.4:10149925-10149944	None:intergenic	30.0%
!	TATTTAGAGTGACAGAATGA+GGG	+	chr1.4:10149924-10149943	None:intergenic	30.0%
	AAATGCACAGAAACCATACA+GGG	+	chr1.4:10149955-10149974	None:intergenic	35.0%
	ATAAACACAGTTAACAACCG+GGG	+	chr1.4:10150153-10150172	None:intergenic	35.0%
	ATACTATCCATCATATACCC+CGG	-	chr1.4:10150133-10150152	MS.gene021553:CDS	35.0%
	ATTTATCACAGACCCATTGA+TGG	-	chr1.4:10149663-10149682	MS.gene021553:CDS	35.0%
	CATGTTGCATAAGTGATTTC+TGG	-	chr1.4:10150423-10150442	MS.gene021553:CDS	35.0%
	GAAAACATTGCTGAGATCAA+GGG	-	chr1.4:10150287-10150306	MS.gene021553:CDS	35.0%
	GAAACATATGGCAATTGCAA+TGG	-	chr1.4:10149801-10149820	MS.gene021553:CDS	35.0%
	GAGAAGATGATTATTCCTTC+AGG	-	chr1.4:10150032-10150051	MS.gene021553:CDS	35.0%
	GATAAACACAGTTAACAACC+GGG	+	chr1.4:10150154-10150173	None:intergenic	35.0%
	GGACCAAAATGTACAACATT+GGG	-	chr1.4:10150387-10150406	MS.gene021553:CDS	35.0%
	TAAATGCACAGAAACCATAC+AGG	+	chr1.4:10149956-10149975	None:intergenic	35.0%
	TGGACCAAAATGTACAACAT+TGG	-	chr1.4:10150386-10150405	MS.gene021553:CDS	35.0%
!	ATAAGTGATTTCTGGAAGGA+TGG	-	chr1.4:10150431-10150450	MS.gene021553:CDS	35.0%
!	TTGCATAAGTGATTTCTGGA+AGG	-	chr1.4:10150427-10150446	MS.gene021553:CDS	35.0%
!!	ATATGTTTCGATTCGGTCTA+CGG	+	chr1.4:10149790-10149809	None:intergenic	35.0%
!!	ATGATGGATAGTATCGAACT+GGG	+	chr1.4:10150127-10150146	None:intergenic	35.0%
!!	TATGATGGATAGTATCGAAC+TGG	+	chr1.4:10150128-10150147	None:intergenic	35.0%
	ATCCAGATTTCCAACTGGAT+CGG	+	chr1.4:10150350-10150369	None:intergenic	40.0%
	ATGGAACCCAACAACTAAAC+AGG	-	chr1.4:10149878-10149897	MS.gene021553:CDS	40.0%
	CCAGTTGGAAATCTGGATTA+TGG	-	chr1.4:10150352-10150371	MS.gene021553:CDS	40.0%
	CCATAATCCAGATTTCCAAC+TGG	+	chr1.4:10150355-10150374	None:intergenic	40.0%
	CGAAAACATTGCTGAGATCA+AGG	-	chr1.4:10150286-10150305	MS.gene021553:CDS	40.0%
	CTCTTGGTCAATTGATCCTA+TGG	-	chr1.4:10149859-10149878	MS.gene021553:CDS	40.0%
	GGAGGTTTGAATCCATCAAT+GGG	+	chr1.4:10149678-10149697	None:intergenic	40.0%
	GGATTGATTACCAGGAAAGA+GGG	+	chr1.4:10149769-10149788	None:intergenic	40.0%
	GTAGACCGAATCGAAACATA+TGG	-	chr1.4:10149789-10149808	MS.gene021553:CDS	40.0%
	GTTTAGTTGTTGGGTTCCAT+AGG	+	chr1.4:10149878-10149897	None:intergenic	40.0%
	TCACTTATGCAACATGTCCA+CGG	+	chr1.4:10150419-10150438	None:intergenic	40.0%
	TCTGGATTATGGATCAGAAC+CGG	-	chr1.4:10150363-10150382	MS.gene021553:CDS	40.0%
	TTAACAACCGGGGTATATGA+TGG	+	chr1.4:10150143-10150162	None:intergenic	40.0%
!	TGGCCCAATGTTGTACATTT+TGG	+	chr1.4:10150393-10150412	None:intergenic	40.0%
!!	TGTTGTACATTTTGGTCCAC+CGG	+	chr1.4:10150385-10150404	None:intergenic	40.0%
	AAGGATGGCGATCAAGTCTT+TGG	-	chr1.4:10150446-10150465	MS.gene021553:CDS	45.0%
	ACAGGAGAGAAGAGTGATGT+AGG	+	chr1.4:10149700-10149719	None:intergenic	45.0%
	AGGTGGACCTGTTTAGTTGT+TGG	+	chr1.4:10149888-10149907	None:intergenic	45.0%
	ATCACTCTTCTCTCCTGTGA+CGG	-	chr1.4:10149702-10149721	MS.gene021553:CDS	45.0%
	ATTTCCAACTGGATCGGACT+AGG	+	chr1.4:10150344-10150363	None:intergenic	45.0%
	CAGGAGAGAAGAGTGATGTA+GGG	+	chr1.4:10149699-10149718	None:intergenic	45.0%
	CGGATTGATTACCAGGAAAG+AGG	+	chr1.4:10149770-10149789	None:intergenic	45.0%
	CTGGCTTCATATGACGATCA+AGG	-	chr1.4:10150488-10150507	MS.gene021553:CDS	45.0%
	GGGAGGTTTGAATCCATCAA+TGG	+	chr1.4:10149679-10149698	None:intergenic	45.0%
	GGTGGACCTGTTTAGTTGTT+GGG	+	chr1.4:10149887-10149906	None:intergenic	45.0%
!	AGAATGTTTAACGTGCCGAC+AGG	+	chr1.4:10150264-10150283	None:intergenic	45.0%
!	CAAGTCTTTGGAGGAAAGGT+TGG	-	chr1.4:10150458-10150477	MS.gene021553:CDS	45.0%
!	CGATCAAGTCTTTGGAGGAA+AGG	-	chr1.4:10150454-10150473	MS.gene021553:CDS	45.0%
!	GAATGTTTAACGTGCCGACA+GGG	+	chr1.4:10150263-10150282	None:intergenic	45.0%
!	GATAGTATCGAACTGGGATG+CGG	+	chr1.4:10150121-10150140	None:intergenic	45.0%
!	GGGCTCTCTTGCTTATGTTT+TGG	-	chr1.4:10150307-10150326	MS.gene021553:CDS	45.0%
	ACCAACTCAAAGCTCCCTGT+CGG	-	chr1.4:10150246-10150265	MS.gene021553:CDS	50.0%
	ACTGGGATGCGGTTAAATGG+TGG	+	chr1.4:10150110-10150129	None:intergenic	50.0%
	AGGAAAGGTTGGAAAGCTGC+TGG	-	chr1.4:10150469-10150488	MS.gene021553:CDS	50.0%
	ATGCAACATGTCCACGGAAC+TGG	+	chr1.4:10150413-10150432	None:intergenic	50.0%
	CGAACTGGGATGCGGTTAAA+TGG	+	chr1.4:10150113-10150132	None:intergenic	50.0%
	GAGAGAAGAGTGATGTAGGG+AGG	+	chr1.4:10149696-10149715	None:intergenic	50.0%
	GATGGCGATCAAGTCTTTGG+AGG	-	chr1.4:10150449-10150468	MS.gene021553:CDS	50.0%
	GGATTATGGATCAGAACCGG+TGG	-	chr1.4:10150366-10150385	MS.gene021553:CDS	50.0%
	GTCCGATCCAGTTGGAAATC+TGG	-	chr1.4:10150345-10150364	MS.gene021553:CDS	50.0%
	TACTTCTGCTCCCTCTTTCC+TGG	-	chr1.4:10149756-10149775	MS.gene021553:CDS	50.0%
	TCATACACTTCTGCGCCTGA+AGG	+	chr1.4:10150050-10150069	None:intergenic	50.0%
	TCATCCTAGTCCGATCCAGT+TGG	-	chr1.4:10150337-10150356	MS.gene021553:CDS	50.0%
!	AGTGACAGAATGAGGGTGCA+GGG	+	chr1.4:10149917-10149936	None:intergenic	50.0%
!	CGGTCTACGGATTGATTACC+AGG	+	chr1.4:10149777-10149796	None:intergenic	50.0%
!	GGATGCGGTTAAATGGTGGA+GGG	+	chr1.4:10150106-10150125	None:intergenic	50.0%
!	GGTTAAATGGTGGAGGGTGA+TGG	+	chr1.4:10150100-10150119	None:intergenic	50.0%
	ACAACATTGGGCCAGTTCCG+TGG	-	chr1.4:10150399-10150418	MS.gene021553:CDS	55.0%
	ACTCTTCTCTCCTGTGACGG+TGG	-	chr1.4:10149705-10149724	MS.gene021553:CDS	55.0%
	GGGATGCGGTTAAATGGTGG+AGG	+	chr1.4:10150107-10150126	None:intergenic	55.0%
!	ATGAGGGTGCAGGGGGTATA+AGG	+	chr1.4:10149908-10149927	None:intergenic	55.0%
!	GAGTGACAGAATGAGGGTGC+AGG	+	chr1.4:10149918-10149937	None:intergenic	55.0%
!	GTGACAGAATGAGGGTGCAG+GGG	+	chr1.4:10149916-10149935	None:intergenic	55.0%
!	TGACAGAATGAGGGTGCAGG+GGG	+	chr1.4:10149915-10149934	None:intergenic	55.0%
!!	AATGGTGGAGGGTGATGGAC+AGG	+	chr1.4:10150095-10150114	None:intergenic	55.0%
!!	ATGGTGGAGGGTGATGGACA+GGG	+	chr1.4:10150094-10150113	None:intergenic	55.0%
!	AGGGTGCAGGGGGTATAAGG+TGG	+	chr1.4:10149905-10149924	None:intergenic	60.0%
!!	GCCGACAGGGAGCTTTGAGT+TGG	+	chr1.4:10150250-10150269	None:intergenic	60.0%
!!	TGGTGGAGGGTGATGGACAG+GGG	+	chr1.4:10150093-10150112	None:intergenic	60.0%
	CTCTCCTGTGACGGTGGCGA+CGG	-	chr1.4:10149711-10149730	MS.gene021553:CDS	65.0%
	TCCTGTGACGGTGGCGACGG+AGG	-	chr1.4:10149714-10149733	MS.gene021553:CDS	70.0%
	TGGCGACGGAGGCGAGGAGT+TGG	-	chr1.4:10149725-10149744	MS.gene021553:CDS	70.0%
	GCCTCCGTCGCCACCGTCAC+AGG	+	chr1.4:10149718-10149737	None:intergenic	75.0%
	TGACGGTGGCGACGGAGGCG+AGG	-	chr1.4:10149719-10149738	MS.gene021553:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	10149660	10150607	10149660	ID=MS.gene021553
chr1.4	mRNA	10149660	10150607	10149660	ID=MS.gene021553.t1;Parent=MS.gene021553
chr1.4	exon	10149660	10150607	10149660	ID=MS.gene021553.t1.exon1;Parent=MS.gene021553.t1
chr1.4	CDS	10149660	10150607	10149660	ID=cds.MS.gene021553.t1;Parent=MS.gene021553.t1

Gene Sequence

>MS.gene021553

ATGATTTATCACAGACCCATTGATGGATTCAAACCTCCCTACATCACTCTTCTCTCCTGTGACGGTGGCGACGGAGGCGAGGAGTTGGAACGTATCTACTTCTGCTCCCTCTTTCCTGGTAATCAATCCGTAGACCGAATCGAAACATATGGCAATTGCAATGGTGTTTTCTTCTTAAAAGCTTTTTATAGGAATTCAACTCTTGGTCAATTGATCCTATGGAACCCAACAACTAAACAGGTCCACCTTATACCCCCTGCACCCTCATTCTGTCACTCTAAATATGATGATTCCCTGTATGGTTTCTGTGCATTTAACGACGACTGTAACATTAATTTCAAAGTTGTTAGACTTCAACAATGTGCACATGTTGAGAAGATGATTATTCCTTCAGGCGCAGAAGTGTATGATCTAAGCACTAAATCATGGACCCCTGTCCATCACCCTCCACCATTTAACCGCATCCCAGTTCGATACTATCCATCATATACCCCGGTTGTTAACTGTGTTTATCATTGGATTGTTACTGTCGATTTGCATACTACTTCAAACATCATCTGCTTTGACTTTCACAACAATCAGTTTCACCAACTCAAAGCTCCCTGTCGGCACGTTAAACATTCTAGCGAAAACATTGCTGAGATCAAGGGCTCTCTTGCTTATGTTTTGGAGTATCATCATCCTAGTCCGATCCAGTTGGAAATCTGGATTATGGATCAGAACCGGTGGACCAAAATGTACAACATTGGGCCAGTTCCGTGGACATGTTGCATAAGTGATTTCTGGAAGGATGGCGATCAAGTCTTTGGAGGAAAGGTTGGAAAGCTGCTGGCTTCATATGACGATCAAGGCAACTCGCTCAGCGAATTTCAAACTTATGTTTTGAATTACTATAGATGTTTATGGGGTTCTGAGTATTTACAGAGCATAACTCCCTTGTCAACCTAG

Protein sequence

>MS.gene021553.t1

MIYHRPIDGFKPPYITLLSCDGGDGGEELERIYFCSLFPGNQSVDRIETYGNCNGVFFLKAFYRNSTLGQLILWNPTTKQVHLIPPAPSFCHSKYDDSLYGFCAFNDDCNINFKVVRLQQCAHVEKMIIPSGAEVYDLSTKSWTPVHHPPPFNRIPVRYYPSYTPVVNCVYHWIVTVDLHTTSNIICFDFHNNQFHQLKAPCRHVKHSSENIAEIKGSLAYVLEYHHPSPIQLEIWIMDQNRWTKMYNIGPVPWTCCISDFWKDGDQVFGGKVGKLLASYDDQGNSLSEFQTYVLNYYRCLWGSEYLQSITPLST