AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059156

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059156.t1 MTR_1g008000 62.951 305 47 5 46 330 1 259 1.10e-120 349
MS.gene059156.t1 MTR_1g037540 37.789 389 160 17 1 319 1 377 1.33e-57 192
MS.gene059156.t1 MTR_4g080200 37.394 353 179 13 5 330 3 340 1.92e-55 185
MS.gene059156.t1 MTR_1g023400 37.640 356 158 16 4 319 2 333 6.25e-47 162
MS.gene059156.t1 MTR_1g022200 37.143 385 177 19 4 345 14 376 8.29e-47 163
MS.gene059156.t1 MTR_1g009110 37.898 314 141 14 3 273 12 314 1.94e-40 146
MS.gene059156.t1 MTR_1g022105 35.211 284 143 14 4 273 20 276 8.77e-28 111
MS.gene059156.t1 MTR_1g023430 40.690 145 75 6 201 341 38 175 1.40e-19 85.5
MS.gene059156.t1 MTR_3g036430 28.821 229 134 8 4 223 19 227 6.16e-16 78.2
MS.gene059156.t1 MTR_6g089990 38.136 118 57 2 4 120 54 156 1.71e-14 72.4
MS.gene059156.t1 MTR_7g013590 26.639 244 143 6 8 223 39 274 2.97e-14 73.6
MS.gene059156.t1 MTR_7g016930 25.267 281 163 12 7 250 18 288 1.05e-13 71.6
MS.gene059156.t1 MTR_6g065980 24.333 300 160 13 8 272 19 286 6.74e-13 69.3
MS.gene059156.t1 MTR_6g090010 57.692 52 22 0 4 55 54 105 6.86e-13 66.2
MS.gene059156.t1 MTR_0620s0010 65.116 43 15 0 4 46 5 47 7.98e-13 63.2
MS.gene059156.t1 MTR_5g046300 23.692 325 186 13 8 295 7 306 1.88e-12 67.8
MS.gene059156.t1 MTR_5g046290 23.692 325 186 13 8 295 7 306 1.88e-12 67.8
MS.gene059156.t1 MTR_1g024125 40.336 119 61 6 208 322 38 150 3.51e-12 63.9
MS.gene059156.t1 MTR_4g109290 35.606 132 73 4 8 134 12 136 8.98e-12 63.5
MS.gene059156.t1 MTR_6g089910 65.116 43 15 0 4 46 54 96 1.71e-11 60.5
MS.gene059156.t1 MTR_8g032390 27.304 293 172 12 5 277 40 311 2.32e-11 64.7
MS.gene059156.t1 MTR_0115s0020 26.048 334 168 16 3 273 8 325 3.20e-11 64.3
MS.gene059156.t1 MTR_4g133170 24.272 309 172 14 5 273 4 290 4.14e-11 63.9
MS.gene059156.t1 MTR_0831s0010 24.790 238 126 11 7 201 52 279 4.75e-11 63.9
MS.gene059156.t1 MTR_7g090810 27.556 225 132 9 67 277 139 346 6.32e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059156.t1 AT3G16210 27.236 246 134 8 1 224 1 223 1.26e-12 68.6
MS.gene059156.t1 AT1G47790 22.973 296 170 12 8 269 28 299 2.83e-11 64.7

Find 77 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATTCTAATCTCATTAAT+TGG 0.178899 1.2:-11669268 None:intergenic
GGTGTTTATCATTGGCTTAT+AGG 0.230766 1.2:+11669082 MS.gene059156:CDS
CAATTAATGAGATTAGAATT+TGG 0.234969 1.2:+11669269 MS.gene059156:CDS
TAAGAGTCTAGGAGAAGATT+TGG 0.251986 1.2:+11668417 MS.gene059156:CDS
ATGTACAATACTCTTGTTAA+TGG 0.263447 1.2:+11669061 MS.gene059156:CDS
GACGAAGCATTTATTAGTTT+TGG 0.264089 1.2:+11668851 MS.gene059156:CDS
TTGTTAGATTACATTGAAAT+TGG 0.271300 1.2:-11669462 None:intergenic
CATGTGTCTCTTAACGAAAT+AGG 0.285013 1.2:-11668527 None:intergenic
AATTAATGAGATTAGAATTT+GGG 0.326552 1.2:+11669270 MS.gene059156:CDS
CCCAACAATCCTTGAATTTG+TGG 0.331872 1.2:+11669938 MS.gene059156:CDS
ATATCTTCATTAGATCTTGT+TGG 0.350920 1.2:-11669414 None:intergenic
TTTGACGACTTTGAATTCAT+TGG 0.369013 1.2:-11668888 None:intergenic
CATGATATCGCGGAGATTAA+CGG 0.370428 1.2:+11669205 MS.gene059156:CDS
CCACAAATTCAAGGATTGTT+GGG 0.374606 1.2:-11669938 None:intergenic
GACAATGTCATAAGAAGGTT+GGG 0.376207 1.2:-11668816 None:intergenic
CAGATACTAGTGAGGCTTCC+GGG 0.384250 1.2:+11668445 MS.gene059156:CDS
TTGTTAATGGTGTTTATCAT+TGG 0.389185 1.2:+11669074 MS.gene059156:CDS
GAGGGACAGGTAAAGGGATA+AGG 0.405900 1.2:-11668997 None:intergenic
ATGTGTCTCTTAACGAAATA+GGG 0.416506 1.2:-11668526 None:intergenic
ACAGATACTAGTGAGGCTTC+CGG 0.420446 1.2:+11668444 MS.gene059156:CDS
AAATCGTGATCATCATGGTT+GGG 0.422524 1.2:-11669106 None:intergenic
ATCGTCCTGTACGCTGGTCT+CGG 0.432823 1.2:+11668921 MS.gene059156:CDS
TTTCTGTTTGCAAGACTGTA+TGG 0.438229 1.2:+11668730 MS.gene059156:intron
GGTTAAAGATCAACAAGGTT+GGG 0.438242 1.2:+11669291 MS.gene059156:CDS
TCTGAAGGAGGGACAGGTAA+AGG 0.449238 1.2:-11669004 None:intergenic
GACTTTGAATTCATTGGTGT+TGG 0.451574 1.2:-11668882 None:intergenic
ATTGAACGCATTCTTTCAAA+GGG 0.454335 1.2:+11669358 MS.gene059156:CDS
ACTTTGAATTCATTGGTGTT+GGG 0.458427 1.2:-11668881 None:intergenic
GCAATTTCACCACAAATTCA+AGG 0.463760 1.2:-11669947 None:intergenic
TATTGAACGCATTCTTTCAA+AGG 0.464379 1.2:+11669357 MS.gene059156:CDS
ACCACAAATTCAAGGATTGT+TGG 0.464682 1.2:-11669939 None:intergenic
CTTGTTGGAACATTCTATCA+AGG 0.472063 1.2:-11669399 None:intergenic
CGACAATGTCATAAGAAGGT+TGG 0.488384 1.2:-11668817 None:intergenic
AGGGACAGGTAAAGGGATAA+GGG 0.489666 1.2:-11668996 None:intergenic
AAGAAGATGGACCTCTCTAA+TGG 0.492276 1.2:-11668792 None:intergenic
CTGAAGGAGGGACAGGTAAA+GGG 0.497818 1.2:-11669003 None:intergenic
TGGAAAGGACTATATCGAAC+TGG 0.498828 1.2:-11669181 None:intergenic
GGGTTAAAGATCAACAAGGT+TGG 0.505393 1.2:+11669290 MS.gene059156:CDS
GATGGACCTCTCTAATGGTT+GGG 0.509330 1.2:-11668787 None:intergenic
AATTGTCTCTCCTATGGTAA+AGG 0.512169 1.2:+11669976 MS.gene059156:CDS
AAGAAGGTTGGGGAAGAAGA+TGG 0.514921 1.2:-11668805 None:intergenic
ATAATCATAGCACTAAATCA+TGG 0.517780 1.2:+11668972 MS.gene059156:CDS
AACCACAATTGTCTCTCCTA+TGG 0.519722 1.2:+11669970 MS.gene059156:CDS
AGATGGACCTCTCTAATGGT+TGG 0.521206 1.2:-11668788 None:intergenic
GAATGCGTTCAATATCAAAT+CGG 0.530755 1.2:-11669348 None:intergenic
ACGCATTCTTTCAAAGGGGA+AGG 0.532718 1.2:+11669363 MS.gene059156:CDS
CGTTAAGAGACACATGCAGA+TGG 0.533125 1.2:+11668534 MS.gene059156:CDS
ATAGTTTCTGAAGGAGGGAC+AGG 0.537807 1.2:-11669010 None:intergenic
CTAGACCGAGACCAGCGTAC+AGG 0.545109 1.2:-11668926 None:intergenic
TGTTAAAATCGTGATCATCA+TGG 0.545146 1.2:-11669111 None:intergenic
AAAATCGTGATCATCATGGT+TGG 0.549224 1.2:-11669107 None:intergenic
ATTTCGATTAACATAAGCAA+GGG 0.557921 1.2:-11669230 None:intergenic
AATCGTGATCATCATGGTTG+GGG 0.560502 1.2:-11669105 None:intergenic
TCTACGACAATGTCATAAGA+AGG 0.569668 1.2:-11668821 None:intergenic
GTTAAGAGACACATGCAGAT+GGG 0.585040 1.2:+11668535 MS.gene059156:CDS
TAATCTCCGCGATATCATGA+TGG 0.585641 1.2:-11669201 None:intergenic
TACCTCTTCTCCTTTACCAT+AGG 0.590831 1.2:-11669986 None:intergenic
TATATGATAGTTTCTGAAGG+AGG 0.592536 1.2:-11669016 None:intergenic
GTATCCATCGTCCTGTACGC+TGG 0.592741 1.2:+11668915 MS.gene059156:CDS
GTAATCTAACAAGTGATCTG+TGG 0.599441 1.2:+11669473 MS.gene059156:CDS
ATATGATAGTTTCTGAAGGA+GGG 0.602960 1.2:-11669015 None:intergenic
ATGGAAAGATCATGAGGAGA+CGG 0.604445 1.2:-11668573 None:intergenic
TGCTAGATGGAAAGATCATG+AGG 0.612845 1.2:-11668579 None:intergenic
GTGGAACCCAACCATTAGAG+AGG 0.613504 1.2:+11668781 MS.gene059156:CDS
AATTTCGATTAACATAAGCA+AGG 0.613905 1.2:-11669231 None:intergenic
TCCGCGATATCATGATGGAA+AGG 0.614688 1.2:-11669196 None:intergenic
TCAGAAACTATCATATATCA+CGG 0.615345 1.2:+11669022 MS.gene059156:CDS
GAGACCAGCGTACAGGACGA+TGG 0.621218 1.2:-11668919 None:intergenic
TCCTTTCCATCATGATATCG+CGG 0.629162 1.2:+11669195 MS.gene059156:CDS
TGATATATGATAGTTTCTGA+AGG 0.639815 1.2:-11669019 None:intergenic
ACAATGTCATAAGAAGGTTG+GGG 0.640082 1.2:-11668815 None:intergenic
GTAGTTGAAACTGATTCGTG+TGG 0.653741 1.2:-11669150 None:intergenic
TCAAATGCGTACAACAATCG+TGG 0.656751 1.2:+11668485 MS.gene059156:CDS
TACCATAGGAGAGACAATTG+TGG 0.659678 1.2:-11669972 None:intergenic
ATTTGGGTTAAAGATCAACA+AGG 0.669261 1.2:+11669286 MS.gene059156:CDS
TGGAGATACAGATACTAGTG+AGG 0.677466 1.2:+11668437 MS.gene059156:CDS
TTGAACGCATTCTTTCAAAG+GGG 0.725587 1.2:+11669359 MS.gene059156:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATGCTTTATTATTTTT+TGG + chr1.2:11669597-11669616 MS.gene059156:intron 10.0%
!! AATTAATGAGATTAGAATTT+GGG + chr1.2:11669270-11669289 MS.gene059156:CDS 15.0%
!!! ATTTTAGTTTTTTTCTTTAG+AGG + chr1.2:11669560-11669579 MS.gene059156:intron 15.0%
!! ATGTTATGATTGTTAACATT+GGG + chr1.2:11669868-11669887 MS.gene059156:intron 20.0%
!! CAAATTCTAATCTCATTAAT+TGG - chr1.2:11669271-11669290 None:intergenic 20.0%
!! CAATTAATGAGATTAGAATT+TGG + chr1.2:11669269-11669288 MS.gene059156:CDS 20.0%
!! TATGTTATGATTGTTAACAT+TGG + chr1.2:11669867-11669886 MS.gene059156:intron 20.0%
!! TTGTAAAACATATTTCCTAT+TGG - chr1.2:11668668-11668687 None:intergenic 20.0%
!! TTGTTAGATTACATTGAAAT+TGG - chr1.2:11669465-11669484 None:intergenic 20.0%
!!! AGTTAAAGTGTTTTAAATTG+TGG + chr1.2:11669837-11669856 MS.gene059156:intron 20.0%
!!! TTTCTTATTTATACACAAAC+CGG + chr1.2:11669655-11669674 MS.gene059156:intron 20.0%
! AAAAAACTAAAATCATGTCC+CGG - chr1.2:11669553-11669572 None:intergenic 25.0%
! AAAATAATACATATGTACCC+CGG - chr1.2:11669677-11669696 None:intergenic 25.0%
! AATTTCGATTAACATAAGCA+AGG - chr1.2:11669234-11669253 None:intergenic 25.0%
! ATAATCATAGCACTAAATCA+TGG + chr1.2:11668972-11668991 MS.gene059156:CDS 25.0%
! ATATCTTCATTAGATCTTGT+TGG - chr1.2:11669417-11669436 None:intergenic 25.0%
! ATGTACAATACTCTTGTTAA+TGG + chr1.2:11669061-11669080 MS.gene059156:CDS 25.0%
! ATTTCGATTAACATAAGCAA+GGG - chr1.2:11669233-11669252 None:intergenic 25.0%
! TCAGAAACTATCATATATCA+CGG + chr1.2:11669022-11669041 MS.gene059156:CDS 25.0%
! TGATATATGATAGTTTCTGA+AGG - chr1.2:11669022-11669041 None:intergenic 25.0%
! TTGTTAATGGTGTTTATCAT+TGG + chr1.2:11669074-11669093 MS.gene059156:CDS 25.0%
!! TTCTTATTTATACACAAACC+GGG + chr1.2:11669656-11669675 MS.gene059156:intron 25.0%
ATGTGTCTCTTAACGAAATA+GGG - chr1.2:11668529-11668548 None:intergenic 30.0%
ATTGAACGCATTCTTTCAAA+GGG + chr1.2:11669358-11669377 MS.gene059156:CDS 30.0%
CCATATGAAAAGATTCTAAG+TGG - chr1.2:11668695-11668714 None:intergenic 30.0%
GAATGCGTTCAATATCAAAT+CGG - chr1.2:11669351-11669370 None:intergenic 30.0%
TATTGAACGCATTCTTTCAA+AGG + chr1.2:11669357-11669376 MS.gene059156:CDS 30.0%
TGTTAAAATCGTGATCATCA+TGG - chr1.2:11669114-11669133 None:intergenic 30.0%
TTCCTATTGGATTTAGTGTT+GGG - chr1.2:11668655-11668674 None:intergenic 30.0%
TTTCCTATTGGATTTAGTGT+TGG - chr1.2:11668656-11668675 None:intergenic 30.0%
TTTGACGACTTTGAATTCAT+TGG - chr1.2:11668891-11668910 None:intergenic 30.0%
! ACTTTGAATTCATTGGTGTT+GGG - chr1.2:11668884-11668903 None:intergenic 30.0%
! ATATGATAGTTTCTGAAGGA+GGG - chr1.2:11669018-11669037 None:intergenic 30.0%
! ATTTGGGTTAAAGATCAACA+AGG + chr1.2:11669286-11669305 MS.gene059156:CDS 30.0%
! CCACTTAGAATCTTTTCATA+TGG + chr1.2:11668692-11668711 MS.gene059156:intron 30.0%
! TATATGATAGTTTCTGAAGG+AGG - chr1.2:11669019-11669038 None:intergenic 30.0%
! TCTTATTTATACACAAACCG+GGG + chr1.2:11669657-11669676 MS.gene059156:intron 30.0%
! TTCAAGACGACTTAATTTTG+TGG + chr1.2:11668762-11668781 MS.gene059156:CDS 30.0%
! TTTTCATATGGTCATTGCAA+TGG + chr1.2:11668704-11668723 MS.gene059156:intron 30.0%
! TTTTCTTCATGTATGCTAGA+TGG - chr1.2:11668595-11668614 None:intergenic 30.0%
!! AGTGTTTTAAATTGTGGTTG+CGG + chr1.2:11669843-11669862 MS.gene059156:intron 30.0%
!! GACGAAGCATTTATTAGTTT+TGG + chr1.2:11668851-11668870 MS.gene059156:CDS 30.0%
AAAATCGTGATCATCATGGT+TGG - chr1.2:11669110-11669129 None:intergenic 35.0%
AAATCGTGATCATCATGGTT+GGG - chr1.2:11669109-11669128 None:intergenic 35.0%
AACCCAACACTAAATCCAAT+AGG + chr1.2:11668650-11668669 MS.gene059156:intron 35.0%
AACGTAATTACGACACAAAC+CGG + chr1.2:11669531-11669550 MS.gene059156:intron 35.0%
ACAATGTCATAAGAAGGTTG+GGG - chr1.2:11668818-11668837 None:intergenic 35.0%
ACCACAAATTCAAGGATTGT+TGG - chr1.2:11669942-11669961 None:intergenic 35.0%
CATGTGTCTCTTAACGAAAT+AGG - chr1.2:11668530-11668549 None:intergenic 35.0%
CCACAAATTCAAGGATTGTT+GGG - chr1.2:11669941-11669960 None:intergenic 35.0%
CTTGTTGGAACATTCTATCA+AGG - chr1.2:11669402-11669421 None:intergenic 35.0%
GACAATGTCATAAGAAGGTT+GGG - chr1.2:11668819-11668838 None:intergenic 35.0%
GACTTTGAATTCATTGGTGT+TGG - chr1.2:11668885-11668904 None:intergenic 35.0%
GCAATTTCACCACAAATTCA+AGG - chr1.2:11669950-11669969 None:intergenic 35.0%
GGTTAAAGATCAACAAGGTT+GGG + chr1.2:11669291-11669310 MS.gene059156:CDS 35.0%
GTAATCTAACAAGTGATCTG+TGG + chr1.2:11669473-11669492 MS.gene059156:CDS 35.0%
TAAGAGTCTAGGAGAAGATT+TGG + chr1.2:11668417-11668436 MS.gene059156:CDS 35.0%
TCTACGACAATGTCATAAGA+AGG - chr1.2:11668824-11668843 None:intergenic 35.0%
TGTCGTAATTACGTTGACAA+GGG - chr1.2:11669526-11669545 None:intergenic 35.0%
TTGAACGCATTCTTTCAAAG+GGG + chr1.2:11669359-11669378 MS.gene059156:CDS 35.0%
TTTCTGTTTGCAAGACTGTA+TGG + chr1.2:11668730-11668749 MS.gene059156:intron 35.0%
! AAACGCAACAATGATTTTCC+CGG - chr1.2:11668466-11668485 None:intergenic 35.0%
!! GGTGTTTATCATTGGCTTAT+AGG + chr1.2:11669082-11669101 MS.gene059156:CDS 35.0%
AACCACAATTGTCTCTCCTA+TGG + chr1.2:11669970-11669989 MS.gene059156:CDS 40.0%
AAGAAGATGGACCTCTCTAA+TGG - chr1.2:11668795-11668814 None:intergenic 40.0%
AATCGTGATCATCATGGTTG+GGG - chr1.2:11669108-11669127 None:intergenic 40.0%
ACGTAATTACGACACAAACC+GGG + chr1.2:11669532-11669551 MS.gene059156:intron 40.0%
ATGGAAAGATCATGAGGAGA+CGG - chr1.2:11668576-11668595 None:intergenic 40.0%
CATGATATCGCGGAGATTAA+CGG + chr1.2:11669205-11669224 MS.gene059156:CDS 40.0%
CCCAACAATCCTTGAATTTG+TGG + chr1.2:11669938-11669957 MS.gene059156:CDS 40.0%
CGACAATGTCATAAGAAGGT+TGG - chr1.2:11668820-11668839 None:intergenic 40.0%
GGGTTAAAGATCAACAAGGT+TGG + chr1.2:11669290-11669309 MS.gene059156:CDS 40.0%
GTGTCGTAATTACGTTGACA+AGG - chr1.2:11669527-11669546 None:intergenic 40.0%
GTTAAGAGACACATGCAGAT+GGG + chr1.2:11668535-11668554 MS.gene059156:CDS 40.0%
TAATCTCCGCGATATCATGA+TGG - chr1.2:11669204-11669223 None:intergenic 40.0%
TACCATAGGAGAGACAATTG+TGG - chr1.2:11669975-11669994 None:intergenic 40.0%
TCAAATGCGTACAACAATCG+TGG + chr1.2:11668485-11668504 MS.gene059156:CDS 40.0%
TCCTTTCCATCATGATATCG+CGG + chr1.2:11669195-11669214 MS.gene059156:CDS 40.0%
TGCTAGATGGAAAGATCATG+AGG - chr1.2:11668582-11668601 None:intergenic 40.0%
TGGAAAGGACTATATCGAAC+TGG - chr1.2:11669184-11669203 None:intergenic 40.0%
TGGAGATACAGATACTAGTG+AGG + chr1.2:11668437-11668456 MS.gene059156:CDS 40.0%
! TAGTGTTGGGTTGTCATGTA+CGG - chr1.2:11668642-11668661 None:intergenic 40.0%
!! GTAGTTGAAACTGATTCGTG+TGG - chr1.2:11669153-11669172 None:intergenic 40.0%
AAGAAGGTTGGGGAAGAAGA+TGG - chr1.2:11668808-11668827 None:intergenic 45.0%
ACAGATACTAGTGAGGCTTC+CGG + chr1.2:11668444-11668463 MS.gene059156:CDS 45.0%
ACGCATTCTTTCAAAGGGGA+AGG + chr1.2:11669363-11669382 MS.gene059156:CDS 45.0%
AGATGGACCTCTCTAATGGT+TGG - chr1.2:11668791-11668810 None:intergenic 45.0%
AGGGACAGGTAAAGGGATAA+GGG - chr1.2:11668999-11669018 None:intergenic 45.0%
CGTTAAGAGACACATGCAGA+TGG + chr1.2:11668534-11668553 MS.gene059156:CDS 45.0%
GATGGACCTCTCTAATGGTT+GGG - chr1.2:11668790-11668809 None:intergenic 45.0%
! ATAGTTTCTGAAGGAGGGAC+AGG - chr1.2:11669013-11669032 None:intergenic 45.0%
! TCCGCGATATCATGATGGAA+AGG - chr1.2:11669199-11669218 None:intergenic 45.0%
!! AAAAAATAATAATTAGAAAT+TGG - chr1.2:11669725-11669744 None:intergenic 5.0%
!! AAAAATAATAATTAGAAATT+GGG - chr1.2:11669724-11669743 None:intergenic 5.0%
CAGATACTAGTGAGGCTTCC+GGG + chr1.2:11668445-11668464 MS.gene059156:CDS 50.0%
CTGAAGGAGGGACAGGTAAA+GGG - chr1.2:11669006-11669025 None:intergenic 50.0%
GAGGGACAGGTAAAGGGATA+AGG - chr1.2:11669000-11669019 None:intergenic 50.0%
GTGGAACCCAACCATTAGAG+AGG + chr1.2:11668781-11668800 MS.gene059156:CDS 50.0%
TCTGAAGGAGGGACAGGTAA+AGG - chr1.2:11669007-11669026 None:intergenic 50.0%
GTATCCATCGTCCTGTACGC+TGG + chr1.2:11668915-11668934 MS.gene059156:CDS 55.0%
! ATCGTCCTGTACGCTGGTCT+CGG + chr1.2:11668921-11668940 MS.gene059156:CDS 55.0%
CTAGACCGAGACCAGCGTAC+AGG - chr1.2:11668929-11668948 None:intergenic 60.0%
GAGACCAGCGTACAGGACGA+TGG - chr1.2:11668922-11668941 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 11668412 11669995 11668412 ID=MS.gene059156
chr1.2 mRNA 11668412 11669995 11668412 ID=MS.gene059156.t1;Parent=MS.gene059156
chr1.2 exon 11668412 11668640 11668412 ID=MS.gene059156.t1.exon1;Parent=MS.gene059156.t1
chr1.2 CDS 11668412 11668640 11668412 ID=cds.MS.gene059156.t1;Parent=MS.gene059156.t1
chr1.2 exon 11668744 11669503 11668744 ID=MS.gene059156.t1.exon2;Parent=MS.gene059156.t1
chr1.2 CDS 11668744 11669503 11668744 ID=cds.MS.gene059156.t1;Parent=MS.gene059156.t1
chr1.2 exon 11669935 11669995 11669935 ID=MS.gene059156.t1.exon3;Parent=MS.gene059156.t1
chr1.2 CDS 11669935 11669995 11669935 ID=cds.MS.gene059156.t1;Parent=MS.gene059156.t1
Gene Sequence

>MS.gene059156

ATGGGTAAGAGTCTAGGAGAAGATTTGGAGATACAGATACTAGTGAGGCTTCCGGGAAAATCATTGTTGCGTTTCAAATGCGTACAACAATCGTGGAATGTTCTCATCAAGACTCCCTATTTCGTTAAGAGACACATGCAGATGGGCATGCAGTCTGACGACCGTCTCCTCATGATCTTTCCATCTAGCATACATGAAGAAAAAAAACGAAGTCACAACGATTCTCTCCGTACATGACAACCCAACACTAAATCCAATAGGAAATATGTTTTACAAAAAACCACTTAGAATCTTTTCATATGGTCATTGCAATGGTGTTTTCTGTTTGCAAGACTGTATGGAGAATCAAATTCAAGACGACTTAATTTTGTGGAACCCAACCATTAGAGAGGTCCATCTTCTTCCCCAACCTTCTTATGACATTGTCGTAGATGAAGATGACGAAGCATTTATTAGTTTTGGTGCTGATCCCAACACCAATGAATTCAAAGTCGTCAAAGTTAGTATCCATCGTCCTGTACGCTGGTCTCGGTCTAGTTCTTTTTCACTTGCTGAACTTTATAATCATAGCACTAAATCATGGACCCTTATCCCTTTACCTGTCCCTCCTTCAGAAACTATCATATATCACGGTCATAGACGTTTTAACATGTACAATACTCTTGTTAATGGTGTTTATCATTGGCTTATAGGCCCCAACCATGATGATCACGATTTTAACATTCTCTGCTTTGACTTCCACACGAATCAGTTTCAACTACTCGAGTCTCCAGTTCGATATAGTCCTTTCCATCATGATATCGCGGAGATTAACGGTTCCCTTGCTTATGTTAATCGAAATTTTTATGCTTTTAATCCAATTAATGAGATTAGAATTTGGGTTAAAGATCAACAAGGTTGGGTCAAGAAATACAACATTAATATCTCACTTGATCGCCGATTTGATATTGAACGCATTCTTTCAAAGGGGAAGGATGATGTTCAAGTCCTTGATAGAATGTTCCAACAAGATCTAATGAAGATATACGATAAAGATTGCAACTTGCTTCACCAATTTCAATGTAATCTAACAAGTGATCTGTGGATTCATGAGTATGTGCAAAGTATAGTTCCCTTGTCAACGTAATTACGACACAAACCGGGACATGATTTTAGTTTTTTTCTTTAGAGGATGATTCAGTATTTATATATGCTTTATTATTTTTTGGTTACATATTATTTAAGTGTAATGCATAATACTACATTTCTTATTTATACACAAACCGGGGTACATATGTATTATTTTTCAGATACTTTAAAGTTTGTTAGACCCAATTTCTAATTATTATTTTTTATATTTAATTGTTTTGAAGAATTATTAGAAGATTTGACTTGTAGAAATTGTTGAAGTTAGTTTAAAATTGTTCAAATTAGAAAAAGTTGTGTAGTTAAAGTGTTTTAAATTGTGGTTGCGGTTATGTTATGATTGTTAACATTGGGAGAAAATTGCTATGCTGCTGTTATTGTGTCTAACATGATTGCAGAAACCCAACAATCCTTGAATTTGTGGTGAAATTGCAACCACAATTGTCTCTCCTATGGTAA
Protein sequence

>MS.gene059156.t1

MGKSLGEDLEIQILVRLPGKSLLRFKCVQQSWNVLIKTPYFVKRHMQMGMQSDDRLLMIFPSSIHEEKKRSHNDSLHCMENQIQDDLILWNPTIREVHLLPQPSYDIVVDEDDEAFISFGADPNTNEFKVVKVSIHRPVRWSRSSSFSLAELYNHSTKSWTLIPLPVPPSETIIYHGHRRFNMYNTLVNGVYHWLIGPNHDDHDFNILCFDFHTNQFQLLESPVRYSPFHHDIAEINGSLAYVNRNFYAFNPINEIRIWVKDQQGWVKKYNINISLDRRFDIERILSKGKDDVQVLDRMFQQDLMKIYDKDCNLLHQFQCNLTSDLWIHENPTILEFVVKLQPQLSLLW