AlfalfaGEDB | MS.gene062698

M. sativa cultivar XinJiangDaYe / MS.gene062698

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062698.t1	RHN79126.1	83.2	262	41	2	31	290	117	377	8.70E-126	459.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062698.t1	A0A396JLJ9	83.2	262	41	2	31	290	117	377	6.2e-126	459.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene062698	MS.gene51199	PPI
MS.gene062698	MS.gene035263	PPI
MS.gene062698	MS.gene67501	PPI
MS.gene062698	MS.gene96406	PPI
MS.gene024002	MS.gene062698	PPI
MS.gene062698	MS.gene27285	PPI
MS.gene062698	MS.gene035262	PPI
MS.gene88774	MS.gene062698	PPI
MS.gene062698	MS.gene028390	PPI
MS.gene062698	MS.gene40878	PPI
MS.gene034686	MS.gene062698	PPI
MS.gene062698	MS.gene96407	PPI
MS.gene40982	MS.gene062698	PPI
MS.gene42452	MS.gene062698	PPI
MS.gene063414	MS.gene062698	PPI
MS.gene062698	MS.gene047279	PPI
MS.gene062698	MS.gene060370	PPI
MS.gene062698	MS.gene50305	PPI
MS.gene062698	MS.gene024002	PPI
MS.gene062698	MS.gene032969	PPI
MS.gene87563	MS.gene062698	PPI
MS.gene57526	MS.gene062698	PPI
MS.gene062698	MS.gene68890	PPI
MS.gene062698	MS.gene50297	PPI
MS.gene062698	MS.gene42445	PPI
MS.gene051820	MS.gene062698	PPI
MS.gene97996	MS.gene062698	PPI
MS.gene062698	MS.gene86273	PPI
MS.gene062698	MS.gene26830	PPI
MS.gene062698	MS.gene40985	PPI
MS.gene062698	MS.gene22715	PPI
MS.gene062698	MS.gene038756	PPI
MS.gene81242	MS.gene062698	PPI
MS.gene26101	MS.gene062698	PPI
MS.gene27283	MS.gene062698	PPI
MS.gene64203	MS.gene062698	PPI
MS.gene062698	MS.gene51207	PPI
MS.gene062698	MS.gene63657	PPI
MS.gene062698	MS.gene059157	PPI
MS.gene062698	MS.gene36595	PPI
MS.gene42444	MS.gene062698	PPI
MS.gene062698	MS.gene024004	PPI
MS.gene51202	MS.gene062698	PPI
MS.gene062698	MS.gene045140	PPI
MS.gene062698	MS.gene070462	PPI
MS.gene87562	MS.gene062698	PPI
MS.gene062698	MS.gene061240	PPI
MS.gene40904	MS.gene062698	PPI
MS.gene062698	MS.gene064086	PPI
MS.gene062698	MS.gene035234	PPI
MS.gene87569	MS.gene062698	PPI
MS.gene064104	MS.gene062698	PPI
MS.gene062698	MS.gene041468	PPI
MS.gene041491	MS.gene062698	PPI
MS.gene062698	MS.gene066639	PPI
MS.gene062698	MS.gene50332	PPI
MS.gene062698	MS.gene42447	PPI
MS.gene059096	MS.gene062698	PPI
MS.gene062698	MS.gene024979	PPI
MS.gene57528	MS.gene062698	PPI
MS.gene50297	MS.gene062698	PPI
MS.gene006711	MS.gene062698	PPI
MS.gene27285	MS.gene062698	PPI
MS.gene064091	MS.gene062698	PPI
MS.gene062698	MS.gene24826	PPI
MS.gene064112	MS.gene062698	PPI
MS.gene062698	MS.gene044425	PPI
MS.gene045476	MS.gene062698	PPI
MS.gene24208	MS.gene062698	PPI
MS.gene50307	MS.gene062698	PPI
MS.gene43796	MS.gene062698	PPI
MS.gene034690	MS.gene062698	PPI
MS.gene96407	MS.gene062698	PPI
MS.gene062698	MS.gene59637	PPI
MS.gene77857	MS.gene062698	PPI
MS.gene062698	MS.gene27022	PPI
MS.gene51191	MS.gene062698	PPI
MS.gene062698	MS.gene87585	PPI
MS.gene062698	MS.gene024009	PPI
MS.gene033430	MS.gene062698	PPI
MS.gene062698	MS.gene036599	PPI
MS.gene50298	MS.gene062698	PPI
MS.gene062698	MS.gene40887	PPI
MS.gene67687	MS.gene062698	PPI
MS.gene062698	MS.gene006705	PPI
MS.gene036583	MS.gene062698	PPI
MS.gene88780	MS.gene062698	PPI
MS.gene062698	MS.gene035237	PPI
MS.gene062698	MS.gene000036	PPI
MS.gene71159	MS.gene062698	PPI
MS.gene96448	MS.gene062698	PPI
MS.gene062698	MS.gene50309	PPI
MS.gene058692	MS.gene062698	PPI
MS.gene041392	MS.gene062698	PPI
MS.gene062698	MS.gene041394	PPI
MS.gene69309	MS.gene062698	PPI
MS.gene062698	MS.gene036664	PPI
MS.gene63658	MS.gene062698	PPI
MS.gene033081	MS.gene062698	PPI
MS.gene062698	MS.gene053257	PPI
MS.gene062698	MS.gene58241	PPI
MS.gene062698	MS.gene77858	PPI
MS.gene062698	MS.gene51201	PPI
MS.gene031591	MS.gene062698	PPI
MS.gene062698	MS.gene058696	PPI
MS.gene062698	MS.gene009893	PPI
MS.gene062698	MS.gene50336	PPI
MS.gene070461	MS.gene062698	PPI
MS.gene062698	MS.gene77704	PPI
MS.gene51199	MS.gene062698	PPI
MS.gene019503	MS.gene062698	PPI
MS.gene87559	MS.gene062698	PPI
MS.gene062698	MS.gene033083	PPI
MS.gene041475	MS.gene062698	PPI
MS.gene062698	MS.gene036663	PPI
MS.gene033441	MS.gene062698	PPI
MS.gene062698	MS.gene68580	PPI
MS.gene062698	MS.gene57525	PPI
MS.gene063826	MS.gene062698	PPI
MS.gene062698	MS.gene023996	PPI
MS.gene060367	MS.gene062698	PPI
MS.gene062698	MS.gene030114	PPI
MS.gene062698	MS.gene045473	PPI
MS.gene44892	MS.gene062698	PPI
MS.gene062698	MS.gene50301	PPI
MS.gene062698	MS.gene88774	PPI
MS.gene062698	MS.gene045474	PPI
MS.gene58239	MS.gene062698	PPI
MS.gene062698	MS.gene031590	PPI
MS.gene062698	MS.gene036558	PPI
MS.gene57531	MS.gene062698	PPI
MS.gene064111	MS.gene062698	PPI
MS.gene062698	MS.gene40984	PPI
MS.gene062698	MS.gene066623	PPI
MS.gene062698	MS.gene064108	PPI
MS.gene26829	MS.gene062698	PPI
MS.gene062698	MS.gene064090	PPI
MS.gene39262	MS.gene062698	PPI
MS.gene053256	MS.gene062698	PPI
MS.gene062698	MS.gene24208	PPI
MS.gene062698	MS.gene58317	PPI
MS.gene75875	MS.gene062698	PPI
MS.gene062698	MS.gene90742	PPI
MS.gene058694	MS.gene062698	PPI
MS.gene062698	MS.gene24212	PPI
MS.gene54049	MS.gene062698	PPI
MS.gene43789	MS.gene062698	PPI
MS.gene006710	MS.gene062698	PPI
MS.gene062698	MS.gene58240	PPI
MS.gene072177	MS.gene062698	PPI
MS.gene58722	MS.gene062698	PPI
MS.gene062698	MS.gene063472	PPI
MS.gene062698	MS.gene43790	PPI
MS.gene062698	MS.gene57717	PPI
MS.gene062698	MS.gene034680	PPI
MS.gene64001	MS.gene062698	PPI
MS.gene062698	MS.gene044563	PPI
MS.gene062698	MS.gene50327	PPI
MS.gene062698	MS.gene066626	PPI
MS.gene062698	MS.gene40982	PPI
MS.gene58312	MS.gene062698	PPI
MS.gene36704	MS.gene062698	PPI
MS.gene032970	MS.gene062698	PPI
MS.gene062698	MS.gene063474	PPI
MS.gene77856	MS.gene062698	PPI
MS.gene062698	MS.gene88416	PPI
MS.gene062698	MS.gene57530	PPI
MS.gene062698	MS.gene034681	PPI
MS.gene58313	MS.gene062698	PPI
MS.gene062698	MS.gene57532	PPI
MS.gene062698	MS.gene003076	PPI
MS.gene066622	MS.gene062698	PPI
MS.gene44887	MS.gene062698	PPI
MS.gene63655	MS.gene062698	PPI
MS.gene44883	MS.gene062698	PPI
MS.gene062698	MS.gene009892	PPI
MS.gene062698	MS.gene061241	PPI
MS.gene062698	MS.gene058669	PPI
MS.gene41046	MS.gene062698	PPI
MS.gene87588	MS.gene062698	PPI
MS.gene017412	MS.gene062698	PPI
MS.gene062698	MS.gene51192	PPI
MS.gene062698	MS.gene51188	PPI
MS.gene062698	MS.gene033875	PPI
MS.gene80884	MS.gene062698	PPI
MS.gene062698	MS.gene041489	PPI
MS.gene062698	MS.gene38220	PPI
MS.gene062698	MS.gene40986	PPI
MS.gene51192	MS.gene062698	PPI
MS.gene009883	MS.gene062698	PPI
MS.gene062698	MS.gene034688	PPI
MS.gene044563	MS.gene062698	PPI
MS.gene069075	MS.gene062698	PPI
MS.gene062698	MS.gene03060	PPI
MS.gene062698	MS.gene24213	PPI
MS.gene062698	MS.gene033440	PPI
MS.gene033427	MS.gene062698	PPI
MS.gene062698	MS.gene024011	PPI
MS.gene062698	MS.gene034677	PPI
MS.gene40985	MS.gene062698	PPI
MS.gene062698	MS.gene064109	PPI
MS.gene041474	MS.gene062698	PPI
MS.gene27020	MS.gene062698	PPI
MS.gene062698	MS.gene035238	PPI
MS.gene062698	MS.gene85043	PPI
MS.gene062698	MS.gene064114	PPI
MS.gene062698	MS.gene87584	PPI
MS.gene041388	MS.gene062698	PPI
MS.gene57536	MS.gene062698	PPI
MS.gene96126	MS.gene062698	PPI
MS.gene51208	MS.gene062698	PPI
MS.gene062698	MS.gene80610	PPI
MS.gene016524	MS.gene062698	PPI
MS.gene50304	MS.gene062698	PPI
MS.gene045475	MS.gene062698	PPI
MS.gene062698	MS.gene90743	PPI
MS.gene88776	MS.gene062698	PPI
MS.gene062698	MS.gene40886	PPI
MS.gene90744	MS.gene062698	PPI
MS.gene51204	MS.gene062698	PPI
MS.gene062698	MS.gene85454	PPI
MS.gene31587	MS.gene062698	PPI
MS.gene036557	MS.gene062698	PPI
MS.gene041393	MS.gene062698	PPI
MS.gene062698	MS.gene041391	PPI
MS.gene062698	MS.gene033443	PPI
MS.gene062698	MS.gene57536	PPI
MS.gene84698	MS.gene062698	PPI
MS.gene062698	MS.gene058701	PPI
MS.gene066641	MS.gene062698	PPI
MS.gene82082	MS.gene062698	PPI
MS.gene062698	MS.gene87554	PPI
MS.gene062698	MS.gene009891	PPI
MS.gene062698	MS.gene064083	PPI
MS.gene062698	MS.gene27051	PPI
MS.gene000038	MS.gene062698	PPI
MS.gene062698	MS.gene048193	PPI
MS.gene062698	MS.gene024420	PPI
MS.gene062698	MS.gene016220	PPI
MS.gene57535	MS.gene062698	PPI
MS.gene062698	MS.gene024008	PPI
MS.gene062698	MS.gene50337	PPI
MS.gene025887	MS.gene062698	PPI
MS.gene062698	MS.gene54541	PPI
MS.gene062698	MS.gene39265	PPI
MS.gene041470	MS.gene062698	PPI
MS.gene87200	MS.gene062698	PPI
MS.gene062698	MS.gene060368	PPI
MS.gene062698	MS.gene053299	PPI
MS.gene062698	MS.gene28758	PPI
MS.gene062698	MS.gene044429	PPI
MS.gene015089	MS.gene062698	PPI
MS.gene062698	MS.gene27284	PPI
MS.gene44885	MS.gene062698	PPI
MS.gene011679	MS.gene062698	PPI
MS.gene060370	MS.gene062698	PPI
MS.gene066635	MS.gene062698	PPI
MS.gene062698	MS.gene48221	PPI
MS.gene57533	MS.gene062698	PPI
MS.gene010758	MS.gene062698	PPI
MS.gene87586	MS.gene062698	PPI
MS.gene062698	MS.gene51190	PPI
MS.gene062698	MS.gene58319	PPI
MS.gene062698	MS.gene034762	PPI
MS.gene062698	MS.gene59943	PPI
MS.gene062698	MS.gene044426	PPI
MS.gene40887	MS.gene062698	PPI
MS.gene50339	MS.gene062698	PPI
MS.gene062698	MS.gene033442	PPI
MS.gene060366	MS.gene062698	PPI
MS.gene062698	MS.gene44428	PPI
MS.gene062698	MS.gene066120	PPI
MS.gene57529	MS.gene062698	PPI
MS.gene062698	MS.gene035235	PPI
MS.gene062698	MS.gene058703	PPI
MS.gene062698	MS.gene024000	PPI
MS.gene062698	MS.gene012215	PPI
MS.gene40902	MS.gene062698	PPI
MS.gene062698	MS.gene033079	PPI
MS.gene021553	MS.gene062698	PPI
MS.gene26957	MS.gene062698	PPI
MS.gene033875	MS.gene062698	PPI
MS.gene062698	MS.gene055694	PPI
MS.gene062698	MS.gene059101	PPI
MS.gene036582	MS.gene062698	PPI
MS.gene27021	MS.gene062698	PPI
MS.gene066620	MS.gene062698	PPI
MS.gene035236	MS.gene062698	PPI
MS.gene062698	MS.gene58316	PPI
MS.gene58320	MS.gene062698	PPI
MS.gene062698	MS.gene033430	PPI
MS.gene062698	MS.gene58321	PPI
MS.gene062698	MS.gene87564	PPI
MS.gene062698	MS.gene58315	PPI
MS.gene58781	MS.gene062698	PPI
MS.gene011106	MS.gene062698	PPI
MS.gene62398	MS.gene062698	PPI
MS.gene60027	MS.gene062698	PPI
MS.gene44886	MS.gene062698	PPI
MS.gene038756	MS.gene062698	PPI
MS.gene062698	MS.gene041473	PPI
MS.gene35068	MS.gene062698	PPI
MS.gene041390	MS.gene062698	PPI
MS.gene92376	MS.gene062698	PPI
MS.gene062698	MS.gene50311	PPI
MS.gene000035	MS.gene062698	PPI
MS.gene50329	MS.gene062698	PPI
MS.gene062698	MS.gene064112	PPI
MS.gene062698	MS.gene058989	PPI
MS.gene062698	MS.gene036556	PPI
MS.gene31637	MS.gene062698	PPI
MS.gene87573	MS.gene062698	PPI
MS.gene062698	MS.gene57538	PPI
MS.gene062698	MS.gene060367	PPI
MS.gene062698	MS.gene058693	PPI
MS.gene062698	MS.gene27319	PPI
MS.gene57537	MS.gene062698	PPI
MS.gene019504	MS.gene062698	PPI
MS.gene062698	MS.gene041395	PPI
MS.gene059156	MS.gene062698	PPI
MS.gene062698	MS.gene51200	PPI
MS.gene062698	MS.gene51189	PPI
MS.gene062698	MS.gene046958	PPI
MS.gene58716	MS.gene062698	PPI
MS.gene062698	MS.gene24286	PPI
MS.gene033444	MS.gene062698	PPI
MS.gene019505	MS.gene062698	PPI
MS.gene50306	MS.gene062698	PPI
MS.gene58785	MS.gene062698	PPI
MS.gene062698	MS.gene58783	PPI
MS.gene066639	MS.gene062698	PPI
MS.gene26949	MS.gene062698	PPI
MS.gene062698	MS.gene40988	PPI
MS.gene036760	MS.gene062698	PPI
MS.gene062698	MS.gene24173	PPI
MS.gene062698	MS.gene036584	PPI
MS.gene062698	MS.gene036662	PPI
MS.gene58311	MS.gene062698	PPI
MS.gene57527	MS.gene062698	PPI
MS.gene033432	MS.gene062698	PPI
MS.gene062698	MS.gene42451	PPI
MS.gene033426	MS.gene062698	PPI
MS.gene062698	MS.gene035261	PPI
MS.gene062698	MS.gene023999	PPI
MS.gene59639	MS.gene062698	PPI
MS.gene062698	MS.gene69307	PPI
MS.gene062698	MS.gene036581	PPI
MS.gene062698	MS.gene019507	PPI
MS.gene062698	MS.gene033431	PPI
MS.gene063670	MS.gene062698	PPI
MS.gene019506	MS.gene062698	PPI
MS.gene50326	MS.gene062698	PPI
MS.gene062698	MS.gene50320	PPI
MS.gene062698	MS.gene58314	PPI
MS.gene062698	MS.gene87557	PPI
MS.gene51200	MS.gene062698	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062698.t1	MTR_1g009110	72.348	264	67	3	31	290	118	379	4.59e-130	374
MS.gene062698.t1	MTR_1g022105	69.198	237	28	4	31	267	127	318	7.02e-105	308
MS.gene062698.t1	MTR_1g023400	42.435	271	134	9	29	289	94	352	1.03e-56	186
MS.gene062698.t1	MTR_1g022200	40.468	299	154	9	9	290	79	370	1.28e-55	184
MS.gene062698.t1	MTR_4g080200	41.852	270	141	7	29	289	87	349	3.66e-55	182
MS.gene062698.t1	MTR_1g037540	41.065	263	125	14	49	289	146	400	5.24e-42	149
MS.gene062698.t1	MTR_1g023430	47.368	133	69	1	158	290	42	173	1.11e-33	121
MS.gene062698.t1	MTR_1g024125	51.923	104	46	2	161	260	38	141	4.08e-29	108
MS.gene062698.t1	MTR_1g008000	42.553	141	66	8	159	290	135	269	4.66e-15	73.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 60 sgRNAs with CRISPR-Local

Find 68 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAAAGTATGATAAATGTTTA+TGG	0.150614	1.4:+2334763	MS.gene062698:CDS
GTCCTGTCCGGTTAGAAATT+TGG	0.176280	1.4:+2334565	MS.gene062698:CDS
AAATATGATGATTCCTTATA+TGG	0.185379	1.4:+2334168	MS.gene062698:CDS
TTGTTAACTACGTTTATTAT+TGG	0.195963	1.4:+2334376	MS.gene062698:CDS
CACATGGCAATTGCAATTAA+TGG	0.267597	1.4:+2334027	MS.gene062698:CDS
GGGTTCACTTGCTTATGTTT+TGG	0.277483	1.4:+2334527	MS.gene062698:CDS
ATGAGGGTGCAGGAGGGATA+TGG	0.328189	1.4:-2334134	None:intergenic
AAAGTATGATAAATGTTTAT+GGG	0.339753	1.4:+2334764	MS.gene062698:CDS
TATTGGAATTCAACAAATCT+TGG	0.344030	1.4:+2334072	MS.gene062698:CDS
CCGGTTAGAAATTTGGATTA+TGG	0.356395	1.4:+2334572	MS.gene062698:CDS
GAAGGAGGAGGGTGATGGAC+AGG	0.358181	1.4:-2334312	None:intergenic
AAGCCGATGCTTTATGCTTC+GGG	0.360072	1.4:+2334252	MS.gene062698:CDS
GAAGCCGATGCTTTATGCTT+CGG	0.376318	1.4:+2334251	MS.gene062698:CDS
AAAGGCACAGAAACCATATA+AGG	0.408235	1.4:-2334181	None:intergenic
AACTTTGAAATTATTTCTAA+AGG	0.414378	1.4:-2334199	None:intergenic
TGAAAACATCGTCGAGATCA+AGG	0.419509	1.4:+2334506	MS.gene062698:CDS
ATGTGATTCAATGTTGTGTA+TGG	0.428693	1.4:-2334009	None:intergenic
ATAACTGTGATCCGGTTAGA+AGG	0.432134	1.4:-2334330	None:intergenic
ATCACCCTCCTCCTTCTAAC+CGG	0.446237	1.4:+2334319	MS.gene062698:CDS
CCATAATCCAAATTTCTAAC+CGG	0.447165	1.4:-2334572	None:intergenic
TAATAAACGTAGTTAACAAC+TGG	0.454507	1.4:-2334372	None:intergenic
TTTATTATTAGCAGGAAAGA+GGG	0.459387	1.4:-2333985	None:intergenic
CTACAACACGTCCACTCAAC+CGG	0.459439	1.4:-2334630	None:intergenic
AAGTTTGAGATTTGCTATGC+AGG	0.475011	1.4:-2334734	None:intergenic
TTCAACATGAGGTTGTCGTT+GGG	0.478589	1.4:+2334229	MS.gene062698:CDS
CTTCAACATGAGGTTGTCGT+TGG	0.499378	1.4:+2334228	MS.gene062698:CDS
ATTTCTAACCGGACAGGACT+AGG	0.503309	1.4:-2334561	None:intergenic
ATCATCTTCCTAGTCCTGTC+CGG	0.513742	1.4:+2334553	MS.gene062698:CDS
GCTAGCTAGCTAGGTTGACA+AGG	0.514125	1.4:-2334814	None:intergenic
CTGACTTCGTATGAAGATCA+AGG	0.526393	1.4:+2334708	MS.gene062698:CDS
GATTATAAATAACTGTGATC+CGG	0.527165	1.4:-2334338	None:intergenic
CGGCGCCGACGATGAGGAGG+TGG	0.528618	1.4:+2333944	None:intergenic
ATCTTGGTCACTTGATTCTG+TGG	0.533610	1.4:+2334088	MS.gene062698:CDS
AAGGAGGAGGGTGATGGACA+GGG	0.542016	1.4:-2334311	None:intergenic
ATCCAAATTTCTAACCGGAC+AGG	0.542204	1.4:-2334567	None:intergenic
GGTTAGAAGGAGGAGGGTGA+TGG	0.546100	1.4:-2334317	None:intergenic
TTAACAACTGGTGTATAAGC+AGG	0.547126	1.4:-2334360	None:intergenic
TCAAAGAATGAGGGTGCAGG+AGG	0.547678	1.4:-2334141	None:intergenic
GAGTCAAAGAATGAGGGTGC+AGG	0.549550	1.4:-2334144	None:intergenic
GTGATCCGGTTAGAAGGAGG+AGG	0.550362	1.4:-2334324	None:intergenic
TTTGGATTATGGATCAAAGT+GGG	0.554416	1.4:+2334583	MS.gene062698:CDS
ATAACATTGGTCCGGTTGAG+TGG	0.557869	1.4:+2334619	MS.gene062698:CDS
GAAAACATCGTCGAGATCAA+GGG	0.557945	1.4:+2334507	MS.gene062698:CDS
ATATTTAGAGTCAAAGAATG+AGG	0.562684	1.4:-2334151	None:intergenic
ACGATCTAAGCACTCAGTCA+TGG	0.566417	1.4:+2334286	MS.gene062698:CDS
AAGTATGATAAATGTTTATG+GGG	0.574545	1.4:+2334765	MS.gene062698:CDS
ATTTGGATTATGGATCAAAG+TGG	0.575328	1.4:+2334582	MS.gene062698:CDS
TGACGGCGCCGACGATGAGG+AGG	0.608116	1.4:+2333941	None:intergenic
GATTATGGATCAAAGTGGGT+GGG	0.612527	1.4:+2334587	MS.gene062698:CDS
AGGAGGAGGGTGATGGACAG+GGG	0.614131	1.4:-2334310	None:intergenic
GGATTATGGATCAAAGTGGG+TGG	0.615476	1.4:+2334586	MS.gene062698:CDS
CTAGCTAGCTAGGTTGACAA+GGG	0.623600	1.4:-2334813	None:intergenic
GCTCCCGAAGCATAAAGCAT+CGG	0.629012	1.4:-2334255	None:intergenic
TATTTAGAGTCAAAGAATGA+GGG	0.639125	1.4:-2334150	None:intergenic
AGTTGTTAGACTTCAACATG+AGG	0.650334	1.4:+2334218	MS.gene062698:CDS
ACTGTGATCCGGTTAGAAGG+AGG	0.659902	1.4:-2334327	None:intergenic
ATACACAACATTGAATCACA+TGG	0.666706	1.4:+2334011	MS.gene062698:CDS
TGATCCGGTTAGAAGGAGGA+GGG	0.681484	1.4:-2334323	None:intergenic
CAAAGAATGAGGGTGCAGGA+GGG	0.683552	1.4:-2334140	None:intergenic
TAATGTTCAACAGCAATACG+CGG	0.694168	1.4:-2334480	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAGTATGATAAATGTTTAT+GGG	+	chr1.4:2334764-2334783	MS.gene062698:CDS	15.0%
!!	TAAAGTATGATAAATGTTTA+TGG	+	chr1.4:2334763-2334782	MS.gene062698:CDS	15.0%
!!!	AACTTTGAAATTATTTCTAA+AGG	-	chr1.4:2334202-2334221	None:intergenic	15.0%
!!!	TCTTTTTAAAAGCTTTTTAT+TGG	+	chr1.4:2334055-2334074	MS.gene062698:CDS	15.0%
!!	AAATATGATGATTCCTTATA+TGG	+	chr1.4:2334168-2334187	MS.gene062698:CDS	20.0%
!!	AAGTATGATAAATGTTTATG+GGG	+	chr1.4:2334765-2334784	MS.gene062698:CDS	20.0%
!!	TTGTTAACTACGTTTATTAT+TGG	+	chr1.4:2334376-2334395	MS.gene062698:CDS	20.0%
!	GATTATAAATAACTGTGATC+CGG	-	chr1.4:2334341-2334360	None:intergenic	25.0%
!	TAATAAACGTAGTTAACAAC+TGG	-	chr1.4:2334375-2334394	None:intergenic	25.0%
!	TATTGGAATTCAACAAATCT+TGG	+	chr1.4:2334072-2334091	MS.gene062698:CDS	25.0%
!	TTTATTATTAGCAGGAAAGA+GGG	-	chr1.4:2333988-2334007	None:intergenic	25.0%
!!	ATATTTAGAGTCAAAGAATG+AGG	-	chr1.4:2334154-2334173	None:intergenic	25.0%
!!	TATTTAGAGTCAAAGAATGA+GGG	-	chr1.4:2334153-2334172	None:intergenic	25.0%
!!	TTTTATTATTAGCAGGAAAG+AGG	-	chr1.4:2333989-2334008	None:intergenic	25.0%
!!!	TGTATGGTTTTATTATTAGC+AGG	-	chr1.4:2333996-2334015	None:intergenic	25.0%
	ATACACAACATTGAATCACA+TGG	+	chr1.4:2334011-2334030	MS.gene062698:CDS	30.0%
	ATGTGATTCAATGTTGTGTA+TGG	-	chr1.4:2334012-2334031	None:intergenic	30.0%
	ATTTGGATTATGGATCAAAG+TGG	+	chr1.4:2334582-2334601	MS.gene062698:CDS	30.0%
	CCATAATCCAAATTTCTAAC+CGG	-	chr1.4:2334575-2334594	None:intergenic	30.0%
	TTTGGATTATGGATCAAAGT+GGG	+	chr1.4:2334583-2334602	MS.gene062698:CDS	30.0%
!	GAAAAAGTATAACATTGGTC+CGG	+	chr1.4:2334611-2334630	MS.gene062698:CDS	30.0%
!	TGGGTGAAAAAGTATAACAT+TGG	+	chr1.4:2334606-2334625	MS.gene062698:CDS	30.0%
	AGTTGTTAGACTTCAACATG+AGG	+	chr1.4:2334218-2334237	MS.gene062698:CDS	35.0%
	CACATGGCAATTGCAATTAA+TGG	+	chr1.4:2334027-2334046	MS.gene062698:CDS	35.0%
	CCGGTTAGAAATTTGGATTA+TGG	+	chr1.4:2334572-2334591	MS.gene062698:CDS	35.0%
	TAATGTTCAACAGCAATACG+CGG	-	chr1.4:2334483-2334502	None:intergenic	35.0%
	TTAACAACTGGTGTATAAGC+AGG	-	chr1.4:2334363-2334382	None:intergenic	35.0%
!	AAAGGCACAGAAACCATATA+AGG	-	chr1.4:2334184-2334203	None:intergenic	35.0%
!!	AAGTTTGAGATTTGCTATGC+AGG	-	chr1.4:2334737-2334756	None:intergenic	35.0%
!!	TTGTAGACGTAGTTTTTGGA+AGG	+	chr1.4:2334647-2334666	MS.gene062698:CDS	35.0%
	ATAACTGTGATCCGGTTAGA+AGG	-	chr1.4:2334333-2334352	None:intergenic	40.0%
	ATCCAAATTTCTAACCGGAC+AGG	-	chr1.4:2334570-2334589	None:intergenic	40.0%
	ATCTTGGTCACTTGATTCTG+TGG	+	chr1.4:2334088-2334107	MS.gene062698:CDS	40.0%
	CTGACTTCGTATGAAGATCA+AGG	+	chr1.4:2334708-2334727	MS.gene062698:CDS	40.0%
	GAAAACATCGTCGAGATCAA+GGG	+	chr1.4:2334507-2334526	MS.gene062698:CDS	40.0%
	GATTATGGATCAAAGTGGGT+GGG	+	chr1.4:2334587-2334606	MS.gene062698:CDS	40.0%
	TGAAAACATCGTCGAGATCA+AGG	+	chr1.4:2334506-2334525	MS.gene062698:CDS	40.0%
	TTCAACATGAGGTTGTCGTT+GGG	+	chr1.4:2334229-2334248	MS.gene062698:CDS	40.0%
!	CGTGTTGTAGACGTAGTTTT+TGG	+	chr1.4:2334643-2334662	MS.gene062698:CDS	40.0%
!	GGGTTCACTTGCTTATGTTT+TGG	+	chr1.4:2334527-2334546	MS.gene062698:CDS	40.0%
!!	AGACGTAGTTTTTGGAAGGA+TGG	+	chr1.4:2334651-2334670	MS.gene062698:CDS	40.0%
	AAGCCGATGCTTTATGCTTC+GGG	+	chr1.4:2334252-2334271	MS.gene062698:CDS	45.0%
	ACGATCTAAGCACTCAGTCA+TGG	+	chr1.4:2334286-2334305	MS.gene062698:CDS	45.0%
	ATAACATTGGTCCGGTTGAG+TGG	+	chr1.4:2334619-2334638	MS.gene062698:CDS	45.0%
	ATCATCTTCCTAGTCCTGTC+CGG	+	chr1.4:2334553-2334572	MS.gene062698:CDS	45.0%
	ATTTCTAACCGGACAGGACT+AGG	-	chr1.4:2334564-2334583	None:intergenic	45.0%
	CTTCAACATGAGGTTGTCGT+TGG	+	chr1.4:2334228-2334247	MS.gene062698:CDS	45.0%
	GAAGCCGATGCTTTATGCTT+CGG	+	chr1.4:2334251-2334270	MS.gene062698:CDS	45.0%
	GGATTATGGATCAAAGTGGG+TGG	+	chr1.4:2334586-2334605	MS.gene062698:CDS	45.0%
	GTCCTGTCCGGTTAGAAATT+TGG	+	chr1.4:2334565-2334584	MS.gene062698:CDS	45.0%
!	AAGGATGGCGATCGAGTTTT+TGG	+	chr1.4:2334666-2334685	MS.gene062698:CDS	45.0%
!!	CGAGTTTTTGGAGGAAAGGT+TGG	+	chr1.4:2334678-2334697	MS.gene062698:CDS	45.0%
!!	CGATCGAGTTTTTGGAGGAA+AGG	+	chr1.4:2334674-2334693	MS.gene062698:CDS	45.0%
	ACTGTGATCCGGTTAGAAGG+AGG	-	chr1.4:2334330-2334349	None:intergenic	50.0%
	ATCACCCTCCTCCTTCTAAC+CGG	+	chr1.4:2334319-2334338	MS.gene062698:CDS	50.0%
	CTACAACACGTCCACTCAAC+CGG	-	chr1.4:2334633-2334652	None:intergenic	50.0%
	GCTCCCGAAGCATAAAGCAT+CGG	-	chr1.4:2334258-2334277	None:intergenic	50.0%
	TGATCCGGTTAGAAGGAGGA+GGG	-	chr1.4:2334326-2334345	None:intergenic	50.0%
!	CAAAGAATGAGGGTGCAGGA+GGG	-	chr1.4:2334143-2334162	None:intergenic	50.0%
!	GAGTCAAAGAATGAGGGTGC+AGG	-	chr1.4:2334147-2334166	None:intergenic	50.0%
!	TCAAAGAATGAGGGTGCAGG+AGG	-	chr1.4:2334144-2334163	None:intergenic	50.0%
!!	GATGGCGATCGAGTTTTTGG+AGG	+	chr1.4:2334669-2334688	MS.gene062698:CDS	50.0%
	GGTTAGAAGGAGGAGGGTGA+TGG	-	chr1.4:2334320-2334339	None:intergenic	55.0%
	GTGATCCGGTTAGAAGGAGG+AGG	-	chr1.4:2334327-2334346	None:intergenic	55.0%
!	ATGAGGGTGCAGGAGGGATA+TGG	-	chr1.4:2334137-2334156	None:intergenic	55.0%
!!	AAGGAGGAGGGTGATGGACA+GGG	-	chr1.4:2334314-2334333	None:intergenic	55.0%
!!	AGGAGGAGGGTGATGGACAG+GGG	-	chr1.4:2334313-2334332	None:intergenic	60.0%
!!	GAAGGAGGAGGGTGATGGAC+AGG	-	chr1.4:2334315-2334334	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	2333955	2334827	2333955	ID=MS.gene062698
chr1.4	mRNA	2333955	2334827	2333955	ID=MS.gene062698.t1;Parent=MS.gene062698
chr1.4	exon	2333955	2334827	2333955	ID=MS.gene062698.t1.exon1;Parent=MS.gene062698.t1
chr1.4	CDS	2333955	2334827	2333955	ID=cds.MS.gene062698.t1;Parent=MS.gene062698.t1

Gene Sequence

>MS.gene062698

ATGAGGAGGTGGAGCGCATCTGCTTCTACTCCCTCTTTCCTGCTAATAATAAAACCATACACAACATTGAATCACATGGCAATTGCAATTAATGGTGTTTTCTTTTTAAAAGCTTTTTATTGGAATTCAACAAATCTTGGTCACTTGATTCTGTGGAACACAACAGTTAAACAAGTTCACCATATCCCTCCTGCACCCTCATTCTTTGACTCTAAATATGATGATTCCTTATATGGTTTCTGTGCCTTTAGAAATAATTTCAAAGTTGTTAGACTTCAACATGAGGTTGTCGTTGGGAAGCCGATGCTTTATGCTTCGGGAGCAGAAGTTTACGATCTAAGCACTCAGTCATGGACCCCTGTCCATCACCCTCCTCCTTCTAACCGGATCACAGTTATTTATAATCCTGCTTATACACCAGTTGTTAACTACGTTTATTATTGGATTACGACTGTCAATTTTTCTACTATTTCAAACATTCTTTGTTTCGACTTTTGCAACATTCAGTTTTACGAACTCAAAGCTCCGCGTATTGCTGTTGAACATTATATTGAAAACATCGTCGAGATCAAGGGTTCACTTGCTTATGTTTTGGAGTATCATCTTCCTAGTCCTGTCCGGTTAGAAATTTGGATTATGGATCAAAGTGGGTGGGTGAAAAAGTATAACATTGGTCCGGTTGAGTGGACGTGTTGTAGACGTAGTTTTTGGAAGGATGGCGATCGAGTTTTTGGAGGAAAGGTTGGACAACTGCTGACTTCGTATGAAGATCAAGGAAACCTGCATAGCAAATCTCAAACTTATCTATTAAAGTATGATAAATGTTTATGGGGTCATGAGTATTTGCAGAGCATAACTCCCTTGTCAACCTAG

Protein sequence

>MS.gene062698.t1

MRRWSASASTPSFLLIIKPYTTLNHMAIAINGVFFLKAFYWNSTNLGHLILWNTTVKQVHHIPPAPSFFDSKYDDSLYGFCAFRNNFKVVRLQHEVVVGKPMLYASGAEVYDLSTQSWTPVHHPPPSNRITVIYNPAYTPVVNYVYYWITTVNFSTISNILCFDFCNIQFYELKAPRIAVEHYIENIVEIKGSLAYVLEYHLPSPVRLEIWIMDQSGWVKKYNIGPVEWTCCRRSFWKDGDRVFGGKVGQLLTSYEDQGNLHSKSQTYLLKYDKCLWGHEYLQSITPLST