AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene011679

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011679.t1 MTR_3g103020 60.390 308 108 6 11 315 82 378 5.35e-120 350
MS.gene011679.t1 MTR_4g117770 58.675 317 114 5 1 315 66 367 6.07e-115 337
MS.gene011679.t1 MTR_4g117810 58.675 317 114 5 1 315 66 367 6.07e-115 337
MS.gene011679.t1 MTR_4g117780 57.605 309 118 4 9 315 70 367 1.17e-112 331
MS.gene011679.t1 MTR_4g117850 58.472 301 107 7 11 308 88 373 6.20e-108 319
MS.gene011679.t1 MTR_4g109270 55.519 308 118 7 11 315 73 364 3.55e-103 306
MS.gene011679.t1 MTR_4g117720 54.603 315 120 11 10 315 78 378 6.24e-103 306
MS.gene011679.t1 MTR_3g034180 54.459 314 121 9 11 314 187 488 2.30e-99 301
MS.gene011679.t1 MTR_3g034130 54.817 301 115 8 11 301 73 362 2.58e-99 297
MS.gene011679.t1 MTR_6g060650 52.134 328 126 11 1 314 62 372 6.33e-95 286
MS.gene011679.t1 MTR_4g109280 54.114 316 128 9 1 315 60 359 7.20e-95 285
MS.gene011679.t1 MTR_3g034160 53.481 316 121 9 11 314 73 374 3.71e-94 284
MS.gene011679.t1 MTR_4g094365 52.443 307 126 9 13 315 74 364 1.20e-91 277
MS.gene011679.t1 MTR_4g122850 52.716 313 126 12 11 315 66 364 6.23e-90 273
MS.gene011679.t1 MTR_4g118380 50.654 306 122 8 1 287 62 357 1.02e-88 270
MS.gene011679.t1 MTR_5g097210 51.935 310 125 11 3 309 69 357 3.94e-86 263
MS.gene011679.t1 MTR_4g023080 47.869 305 134 8 11 314 73 353 7.49e-84 257
MS.gene011679.t1 MTR_4g023090 45.714 315 139 9 11 309 80 378 3.35e-82 254
MS.gene011679.t1 MTR_4g116330 48.243 313 142 8 8 315 83 380 3.72e-82 253
MS.gene011679.t1 MTR_4g021785 46.032 315 147 7 1 315 64 355 1.49e-81 251
MS.gene011679.t1 MTR_4g023070 46.835 316 143 7 11 314 67 369 1.84e-81 251
MS.gene011679.t1 MTR_4g023190 47.213 305 138 8 11 313 74 357 2.11e-80 248
MS.gene011679.t1 MTR_1g055195 48.418 316 133 10 7 315 186 478 1.04e-79 250
MS.gene011679.t1 MTR_4g023120 45.741 317 147 7 11 315 67 370 1.05e-79 247
MS.gene011679.t1 MTR_4g117870 47.267 311 115 9 6 315 5 267 4.36e-79 242
MS.gene011679.t1 MTR_1g055135 46.624 311 149 9 11 315 76 375 3.11e-78 243
MS.gene011679.t1 MTR_4g023200 45.902 305 143 8 11 313 74 358 8.15e-78 241
MS.gene011679.t1 MTR_5g070080 45.846 325 145 8 4 309 67 379 9.40e-78 242
MS.gene011679.t1 MTR_5g070130 46.580 307 148 6 10 309 73 370 5.19e-77 240
MS.gene011679.t1 MTR_8g433040 48.387 310 130 10 11 315 80 364 9.30e-77 239
MS.gene011679.t1 MTR_8g032380 48.387 310 130 10 11 315 80 364 9.30e-77 239
MS.gene011679.t1 MTR_4g023150 45.574 305 144 8 11 313 74 358 1.49e-75 236
MS.gene011679.t1 MTR_4g023380 42.815 341 137 10 1 315 71 379 3.14e-75 236
MS.gene011679.t1 MTR_8g040935 61.951 205 70 5 115 315 8 208 2.15e-74 228
MS.gene011679.t1 MTR_4g023130 46.528 288 131 7 28 314 47 312 9.34e-74 229
MS.gene011679.t1 MTR_8g032390 49.645 282 119 10 37 309 102 369 6.73e-73 229
MS.gene011679.t1 MTR_4g117750 46.497 314 138 12 7 309 59 353 7.33e-69 222
MS.gene011679.t1 MTR_4g117750 60.377 106 41 1 204 309 373 477 3.65e-35 133
MS.gene011679.t1 MTR_4g118400 43.894 303 119 8 17 309 33 294 9.72e-68 214
MS.gene011679.t1 MTR_4g116320 54.545 220 92 5 94 312 43 255 1.43e-67 212
MS.gene011679.t1 MTR_5g070088 42.138 318 159 5 10 309 69 379 1.78e-67 216
MS.gene011679.t1 MTR_4g023440 40.317 315 132 8 1 315 74 332 3.76e-64 206
MS.gene011679.t1 MTR_8g433030 53.812 223 89 7 90 309 125 336 4.33e-63 203
MS.gene011679.t1 MTR_7g079400 42.105 323 156 13 5 315 34 337 5.45e-61 197
MS.gene011679.t1 MTR_7g079370 40.385 312 163 9 10 309 50 350 2.86e-58 191
MS.gene011679.t1 MTR_4g116330 40.895 313 126 8 8 315 83 341 4.06e-58 190
MS.gene011679.t1 MTR_4g121580 43.791 306 117 13 11 305 78 339 4.57e-58 192
MS.gene011679.t1 MTR_1g055165 39.869 306 121 8 12 315 74 318 6.56e-58 189
MS.gene011679.t1 MTR_8g013010 49.537 216 91 7 1 213 109 309 2.74e-57 187
MS.gene011679.t1 MTR_4g118370 47.012 251 101 9 62 309 33 254 1.49e-56 184
MS.gene011679.t1 MTR_4g117530 43.307 254 92 5 67 315 47 253 9.50e-56 181
MS.gene011679.t1 MTR_6g463430 48.325 209 97 6 109 315 3 202 4.05e-53 173
MS.gene011679.t1 MTR_4g117430 55.294 170 56 5 52 216 1 155 1.01e-52 170
MS.gene011679.t1 MTR_1g055175 48.744 199 94 5 120 315 8 201 2.26e-51 168
MS.gene011679.t1 MTR_8g102520 42.692 260 134 8 61 315 73 322 2.34e-51 172
MS.gene011679.t1 MTR_4g114700 39.925 268 95 8 47 306 9 218 3.19e-49 164
MS.gene011679.t1 MTR_2g048580 37.821 312 149 13 9 315 71 342 3.33e-47 162
MS.gene011679.t1 MTR_1g055250 45.050 202 97 7 89 286 49 240 2.77e-42 149
MS.gene011679.t1 MTR_7g079420 37.276 279 127 9 46 315 905 1144 1.04e-39 149
MS.gene011679.t1 MTR_4g116340 45.087 173 82 5 10 176 82 247 1.20e-36 132
MS.gene011679.t1 MTR_4g118360 55.932 118 47 3 199 315 13 126 8.60e-36 125
MS.gene011679.t1 MTR_5g023000 56.311 103 38 2 216 315 1 99 8.52e-31 112
MS.gene011679.t1 MTR_7g117720 49.655 145 59 7 2 141 49 184 5.38e-30 115
MS.gene011679.t1 MTR_7g117720 54.651 86 36 2 227 309 186 271 1.76e-17 81.3
MS.gene011679.t1 MTR_8g098830 39.901 203 98 9 121 315 35 221 1.24e-28 110
MS.gene011679.t1 MTR_4g122860 37.963 216 95 8 105 315 139 320 1.08e-27 110
MS.gene011679.t1 MTR_6g034720 47.619 126 56 6 73 193 53 173 5.76e-26 103
MS.gene011679.t1 MTR_7g079450 43.243 148 69 4 171 315 2 137 2.26e-23 94.0
MS.gene011679.t1 MTR_5g069120 44.275 131 55 6 10 129 54 177 3.52e-19 83.6
MS.gene011679.t1 MTR_1g094210 28.090 267 153 10 40 295 150 388 4.95e-19 87.4
MS.gene011679.t1 MTR_4g023430 53.086 81 36 1 237 315 142 222 6.95e-19 84.0
MS.gene011679.t1 MTR_4g133170 27.386 241 147 10 40 265 86 313 1.35e-18 85.9
MS.gene011679.t1 MTR_2g426020 26.984 252 156 9 44 277 100 341 1.35e-18 85.9
MS.gene011679.t1 MTR_1g094210 27.046 281 160 11 40 307 150 398 2.71e-17 82.0
MS.gene011679.t1 MTR_1g068835 29.384 211 128 9 44 243 91 291 4.26e-17 81.3
MS.gene011679.t1 MTR_8g013005 68.333 60 18 1 256 315 1 59 5.96e-17 74.3
MS.gene011679.t1 MTR_5g057790 30.876 217 127 10 44 255 142 340 1.10e-16 80.5
MS.gene011679.t1 MTR_2g024110 25.490 204 137 7 44 239 93 289 1.12e-16 80.1
MS.gene011679.t1 MTR_4g055060 30.830 253 145 14 14 254 98 332 3.92e-16 78.6
MS.gene011679.t1 MTR_2g021150 27.757 263 156 12 16 265 87 328 5.10e-16 78.2
MS.gene011679.t1 MTR_3g036290 32.075 212 113 10 42 250 117 300 1.15e-15 77.0
MS.gene011679.t1 MTR_2g026010 26.244 221 141 8 44 249 90 303 1.88e-15 76.6
MS.gene011679.t1 MTR_2g025960 26.000 250 150 10 44 269 5 243 3.61e-15 75.1
MS.gene011679.t1 MTR_1g068860 26.891 238 151 10 18 243 67 293 4.64e-15 75.5
MS.gene011679.t1 MTR_3g013740 31.308 214 127 8 44 250 149 349 8.03e-15 75.1
MS.gene011679.t1 MTR_1g055200 50.000 88 36 4 43 129 5 85 1.10e-14 69.3
MS.gene011679.t1 MTR_3g014540 30.986 213 124 10 40 244 119 316 2.32e-14 73.6
MS.gene011679.t1 MTR_2g028160 24.701 251 165 9 44 275 106 351 2.37e-14 73.6
MS.gene011679.t1 MTR_8g101580 24.000 250 172 8 63 307 158 394 3.30e-14 73.2
MS.gene011679.t1 MTR_4g109290 68.889 45 14 0 59 103 89 133 5.12e-14 69.7
MS.gene011679.t1 MTR_4g109290 64.815 54 18 1 262 315 136 188 7.99e-11 60.8
MS.gene011679.t1 MTR_8g464770 25.333 300 200 10 21 309 91 377 5.30e-14 72.4
MS.gene011679.t1 MTR_4g108820 26.829 246 139 10 31 263 96 313 5.57e-14 71.6
MS.gene011679.t1 MTR_2g028130 25.197 254 158 11 44 275 106 349 6.18e-14 72.4
MS.gene011679.t1 MTR_2g021155 30.488 246 131 13 23 252 110 331 8.68e-14 72.4
MS.gene011679.t1 MTR_2g021155 27.363 201 121 9 54 244 702 887 1.21e-13 72.0
MS.gene011679.t1 MTR_1g068875 25.106 235 156 9 18 243 67 290 9.94e-14 71.6
MS.gene011679.t1 MTR_3g006670 31.884 207 120 11 39 239 141 332 1.23e-13 71.2
MS.gene011679.t1 MTR_8g063440 24.126 286 185 11 39 308 110 379 1.34e-13 71.2
MS.gene011679.t1 MTR_6g021880 28.358 268 179 9 45 307 122 381 1.51e-13 70.9
MS.gene011679.t1 MTR_1g097560 26.693 251 151 11 40 282 127 352 5.94e-13 69.3
MS.gene011679.t1 MTR_3g007360 28.629 248 133 13 44 270 145 369 7.01e-13 68.9
MS.gene011679.t1 MTR_3g007430 29.302 215 131 8 33 239 123 324 7.16e-13 68.9
MS.gene011679.t1 MTR_1g097330 26.809 235 141 10 42 265 107 321 8.53e-13 68.9
MS.gene011679.t1 MTR_2g021190 27.660 235 152 10 14 244 89 309 1.03e-12 68.6
MS.gene011679.t1 MTR_2g021050 26.230 244 142 10 15 243 65 285 1.35e-12 68.2
MS.gene011679.t1 MTR_6g007135 27.803 223 140 9 38 252 120 329 1.44e-12 68.2
MS.gene011679.t1 MTR_7g079640 28.926 242 144 11 63 294 136 359 1.58e-12 67.8
MS.gene011679.t1 MTR_6g007150 28.829 222 131 9 38 248 65 270 1.94e-12 67.4
MS.gene011679.t1 MTR_2g425980 26.991 226 138 9 44 248 98 317 2.21e-12 67.8
MS.gene011679.t1 MTR_2g024100 28.182 220 125 10 44 239 96 306 2.43e-12 67.4
MS.gene011679.t1 MTR_2g031720 25.397 252 167 10 44 281 96 340 2.72e-12 67.4
MS.gene011679.t1 MTR_3g007410 29.596 223 117 12 44 249 145 344 2.81e-12 67.4
MS.gene011679.t1 MTR_4g030830 24.172 302 171 12 44 307 112 393 3.54e-12 67.0
MS.gene011679.t1 MTR_3g083010 23.715 253 171 6 44 277 108 357 3.66e-12 67.0
MS.gene011679.t1 MTR_5g057690 29.680 219 121 11 42 255 140 330 3.70e-12 67.0
MS.gene011679.t1 MTR_4g117550 27.985 268 136 12 61 308 139 369 6.46e-12 65.9
MS.gene011679.t1 MTR_5g021860 26.407 231 145 9 39 255 167 386 6.84e-12 66.2
MS.gene011679.t1 MTR_5g021860 26.407 231 145 9 39 255 167 386 7.33e-12 66.2
MS.gene011679.t1 MTR_5g097350 25.087 287 170 12 40 308 124 383 1.07e-11 65.5
MS.gene011679.t1 MTR_4g107820 27.823 248 149 12 42 279 130 357 1.83e-11 64.7
MS.gene011679.t1 MTR_3g014570 28.899 218 138 7 40 252 119 324 2.08e-11 64.7
MS.gene011679.t1 MTR_4g107820 27.823 248 149 12 42 279 130 357 2.10e-11 64.7
MS.gene011679.t1 MTR_4g107780 27.823 248 149 12 42 279 130 357 2.10e-11 64.7
MS.gene011679.t1 MTR_4g107780 27.823 248 149 12 42 279 130 357 2.10e-11 64.7
MS.gene011679.t1 MTR_2g461450 24.549 277 168 10 11 265 73 330 2.22e-11 64.3
MS.gene011679.t1 MTR_3g009310 30.000 200 119 9 44 239 140 322 3.65e-11 63.9
MS.gene011679.t1 MTR_4g007940 24.514 257 152 9 63 291 80 322 3.66e-11 63.5
MS.gene011679.t1 MTR_5g086590 27.451 204 116 10 55 243 8 194 3.68e-11 62.8
MS.gene011679.t1 MTR_6g053260 25.185 270 170 11 35 301 429 669 3.79e-11 64.3
MS.gene011679.t1 MTR_3g007330 30.769 208 119 12 44 243 137 327 4.10e-11 63.5
MS.gene011679.t1 MTR_3g006640 27.679 224 125 11 40 244 16 221 5.99e-11 62.8
MS.gene011679.t1 MTR_2g028110 25.110 227 146 9 39 248 85 304 6.84e-11 63.2
MS.gene011679.t1 MTR_5g011200 27.982 218 129 11 35 244 109 306 7.54e-11 62.8
MS.gene011679.t1 MTR_4g023100 57.895 57 21 1 259 315 66 119 8.05e-11 58.9
MS.gene011679.t1 MTR_7g070830 25.926 270 146 12 42 265 114 375 9.50e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011679.t1 AT3G06240 27.652 264 153 12 32 280 153 393 1.18e-16 80.5
MS.gene011679.t1 AT3G23880 27.305 282 174 13 32 307 104 360 5.12e-16 78.2
MS.gene011679.t1 AT1G32600 25.616 203 126 10 20 222 23 200 2.81e-12 66.6

Find 72 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCACTTGATTCCCTATTAA+TGG 0.188004 8.3:-22715854 None:intergenic
GAAATGTTCGTCGCGTAAAT+TGG 0.195446 8.3:-22715236 None:intergenic
TTCAAAATCATAATAAGATT+TGG 0.206976 8.3:-22715095 None:intergenic
TAGAGCATTCCTCCATTAAT+AGG 0.212795 8.3:+22715842 MS.gene011679:CDS
GATTGTGGTTTGTGGGTATT+TGG 0.241982 8.3:+22715595 MS.gene011679:CDS
ATAATAGTACAGCTGAAATA+TGG 0.258630 8.3:+22715650 MS.gene011679:CDS
TCGTCGTAGCTACTTGTATA+AGG 0.267256 8.3:-22715412 None:intergenic
ATTATAGAGGCACCCTGCTT+TGG 0.270652 8.3:-22715440 None:intergenic
ATTCTTCAAAACTCTATCTA+TGG 0.290808 8.3:+22715164 MS.gene011679:CDS
GATCACAGTATTGTAATAAT+AGG 0.306433 8.3:-22715311 None:intergenic
GACGAACATTTCTATGGTTT+AGG 0.311221 8.3:+22715247 MS.gene011679:CDS
TTATAGAGGCACCCTGCTTT+GGG 0.321689 8.3:-22715439 None:intergenic
AAAGCAGGGTGCCTCTATAA+TGG 0.327045 8.3:+22715442 MS.gene011679:CDS
TTACGCGACGAACATTTCTA+TGG 0.332601 8.3:+22715241 MS.gene011679:CDS
TCAAAATCATAATAAGATTT+GGG 0.354108 8.3:-22715094 None:intergenic
ACGAACATTTCTATGGTTTA+GGG 0.370783 8.3:+22715248 MS.gene011679:CDS
AAGCAGGGTGCCTCTATAAT+GGG 0.371254 8.3:+22715443 MS.gene011679:CDS
TCTATAATGGGGCTATTCAT+TGG 0.373487 8.3:+22715455 MS.gene011679:CDS
TGAAAACCTACATAATCATA+TGG 0.381499 8.3:-22715559 None:intergenic
GTGAGAGGAGTTTGATGATC+TGG 0.398196 8.3:-22715004 None:intergenic
CAAATACCTTTGTCCCCTCT+TGG 0.408500 8.3:+22715211 MS.gene011679:CDS
TATATCTAAAAGATTCCTTT+CGG 0.424503 8.3:-22715530 None:intergenic
TCCTATGGATTGTGGTTTGT+GGG 0.425204 8.3:+22715588 MS.gene011679:CDS
CATTTCCCATATGATTATGT+AGG 0.442764 8.3:+22715553 MS.gene011679:CDS
ATCCTATGGATTGTGGTTTG+TGG 0.444692 8.3:+22715587 MS.gene011679:CDS
AGAGCATTCCTCCATTAATA+GGG 0.449247 8.3:+22715843 MS.gene011679:CDS
ATTGGAACAGATGGTGGTAC+TGG 0.468517 8.3:+22715787 MS.gene011679:CDS
CACTGTGATCCTATGGATTG+TGG 0.475668 8.3:+22715580 MS.gene011679:CDS
TAATAGTACAGCTGAAATAT+GGG 0.480639 8.3:+22715651 MS.gene011679:CDS
TGATTGGGAAAGTCATCAAC+AGG 0.485811 8.3:-22715724 None:intergenic
CGTCGTAGCTACTTGTATAA+GGG 0.490877 8.3:-22715411 None:intergenic
TCTCATTGCGAAACAATACA+TGG 0.493782 8.3:+22715365 MS.gene011679:CDS
TAAGCTTGCTCATTGTTACA+AGG 0.495306 8.3:-22715919 None:intergenic
AGATGATATTCCATCATACT+TGG 0.495800 8.3:+22715336 MS.gene011679:CDS
TACGACGATAAGCCCAAAGC+AGG 0.499890 8.3:+22715427 MS.gene011679:CDS
TAATGGGGCTATTCATTGGT+TGG 0.502486 8.3:+22715459 MS.gene011679:CDS
AATACAAAATCAATTCGTCT+TGG 0.508534 8.3:+22715683 MS.gene011679:CDS
AATGAATAGCCCCATTATAG+AGG 0.512893 8.3:-22715453 None:intergenic
GAAATTAAAGGTTCATGTAG+AGG 0.523080 8.3:+22715115 MS.gene011679:CDS
AAATTAAAGGTTCATGTAGA+GGG 0.530849 8.3:+22715116 MS.gene011679:CDS
GTCAACCGATGATTACTTGG+TGG 0.543507 8.3:+22715279 MS.gene011679:CDS
TGAGTCAACCGATGATTACT+TGG 0.546599 8.3:+22715276 MS.gene011679:CDS
GAAAACCTACATAATCATAT+GGG 0.547025 8.3:-22715558 None:intergenic
CTAGTAAGCTTGATATACCT+AGG 0.552782 8.3:+22715482 MS.gene011679:CDS
GGTGATATTATTGGAACAGA+TGG 0.560748 8.3:+22715778 MS.gene011679:CDS
AATGCAACAATAACATCCCT+AGG 0.564581 8.3:-22715499 None:intergenic
CGCGTAAATTGGAACCAAGA+GGG 0.567554 8.3:-22715225 None:intergenic
AAGCTTGCTCATTGTTACAA+GGG 0.573699 8.3:-22715918 None:intergenic
TGTTTGTGAAGTCCAGTCGA+TGG 0.573984 8.3:-22715190 None:intergenic
TATCTATGGAATCCATCGAC+TGG 0.575404 8.3:+22715178 MS.gene011679:CDS
TAGTAAGCTTGATATACCTA+GGG 0.585497 8.3:+22715483 MS.gene011679:CDS
AAAATCAAGATTAAGTGAAG+CGG 0.589148 8.3:-22715065 None:intergenic
TAAAACCACCAAGTAATCAT+CGG 0.600604 8.3:-22715284 None:intergenic
CGGTGTGTACATAGCCACTT+GGG 0.606715 8.3:-22715881 None:intergenic
TTGGAACCAAGAGGGGACAA+AGG 0.613590 8.3:-22715217 None:intergenic
ACGGTGTGTACATAGCCACT+TGG 0.616116 8.3:-22715882 None:intergenic
GCGTAAATTGGAACCAAGAG+GGG 0.619064 8.3:-22715224 None:intergenic
GCTTCTATGTCTACAGTGAG+AGG 0.621875 8.3:-22715019 None:intergenic
AACAGATGGTGGTACTGGAT+TGG 0.625571 8.3:+22715792 MS.gene011679:CDS
ACTTGATTCCCTATTAATGG+AGG 0.626585 8.3:-22715851 None:intergenic
CGTAGCTACTTGTATAAGGG+TGG 0.628722 8.3:-22715408 None:intergenic
AGAGGAGTTTGATGATCTGG+AGG 0.631764 8.3:-22715001 None:intergenic
ACCCACAAACCACAATCCAT+AGG 0.640888 8.3:-22715589 None:intergenic
CAAGGGAGTGAAAGTAGAGA+CGG 0.652029 8.3:-22715901 None:intergenic
TCCATTAATAGGGAATCAAG+TGG 0.662976 8.3:+22715853 MS.gene011679:CDS
AGCAGGGTGCCTCTATAATG+GGG 0.666385 8.3:+22715444 MS.gene011679:CDS
GATATTATTGGAACAGATGG+TGG 0.666571 8.3:+22715781 MS.gene011679:CDS
ATTAATAGGGAATCAAGTGG+TGG 0.667875 8.3:+22715856 MS.gene011679:CDS
TCGCGTAAATTGGAACCAAG+AGG 0.671601 8.3:-22715226 None:intergenic
ATCAAGTGGTGGATCCCAAG+TGG 0.674372 8.3:+22715867 MS.gene011679:CDS
ACGACGATAAGCCCAAAGCA+GGG 0.680029 8.3:+22715428 MS.gene011679:CDS
TTGGTGAAGTATGATGACAA+TGG 0.745035 8.3:+22715811 MS.gene011679:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATGATTTTGAAATTAA+AGG + chr8.3:22715103-22715122 MS.gene011679:CDS 10.0%
!! TCAAAATCATAATAAGATTT+GGG - chr8.3:22715097-22715116 None:intergenic 15.0%
!! TTCAAAATCATAATAAGATT+TGG - chr8.3:22715098-22715117 None:intergenic 15.0%
!! ACAAAAAATGGTGATATTAT+TGG + chr8.3:22715769-22715788 MS.gene011679:CDS 20.0%
!! TATATCTAAAAGATTCCTTT+CGG - chr8.3:22715533-22715552 None:intergenic 20.0%
! AAAATCAAGATTAAGTGAAG+CGG - chr8.3:22715068-22715087 None:intergenic 25.0%
! AAATTAAAGGTTCATGTAGA+GGG + chr8.3:22715116-22715135 MS.gene011679:CDS 25.0%
! AATACAAAATCAATTCGTCT+TGG + chr8.3:22715683-22715702 MS.gene011679:CDS 25.0%
! ATAATAGTACAGCTGAAATA+TGG + chr8.3:22715650-22715669 MS.gene011679:CDS 25.0%
! ATTCTTCAAAACTCTATCTA+TGG + chr8.3:22715164-22715183 MS.gene011679:CDS 25.0%
! GAAAACCTACATAATCATAT+GGG - chr8.3:22715561-22715580 None:intergenic 25.0%
! GATCACAGTATTGTAATAAT+AGG - chr8.3:22715314-22715333 None:intergenic 25.0%
! TAATAGTACAGCTGAAATAT+GGG + chr8.3:22715651-22715670 MS.gene011679:CDS 25.0%
! TGAAAACCTACATAATCATA+TGG - chr8.3:22715562-22715581 None:intergenic 25.0%
!!! AATGCTAAAAAGTACTGATT+GGG - chr8.3:22715742-22715761 None:intergenic 25.0%
ACGAACATTTCTATGGTTTA+GGG + chr8.3:22715248-22715267 MS.gene011679:CDS 30.0%
AGATGATATTCCATCATACT+TGG + chr8.3:22715336-22715355 MS.gene011679:CDS 30.0%
CATTTCCCATATGATTATGT+AGG + chr8.3:22715553-22715572 MS.gene011679:CDS 30.0%
GAAATTAAAGGTTCATGTAG+AGG + chr8.3:22715115-22715134 MS.gene011679:CDS 30.0%
GCATTGTGTTGTACAAAAAA+TGG + chr8.3:22715757-22715776 MS.gene011679:CDS 30.0%
TAAAACCACCAAGTAATCAT+CGG - chr8.3:22715287-22715306 None:intergenic 30.0%
TAGTAAGCTTGATATACCTA+GGG + chr8.3:22715483-22715502 MS.gene011679:CDS 30.0%
!! CAATGCTAAAAAGTACTGAT+TGG - chr8.3:22715743-22715762 None:intergenic 30.0%
!! TTGCATTTGATTTTACCGAA+AGG + chr8.3:22715515-22715534 MS.gene011679:CDS 30.0%
!!! TGATTACTTGGTGGTTTTAA+TGG + chr8.3:22715288-22715307 MS.gene011679:CDS 30.0%
AATGAATAGCCCCATTATAG+AGG - chr8.3:22715456-22715475 None:intergenic 35.0%
AATGCAACAATAACATCCCT+AGG - chr8.3:22715502-22715521 None:intergenic 35.0%
ACCACTTGATTCCCTATTAA+TGG - chr8.3:22715857-22715876 None:intergenic 35.0%
ACTTGATTCCCTATTAATGG+AGG - chr8.3:22715854-22715873 None:intergenic 35.0%
ATTAATAGGGAATCAAGTGG+TGG + chr8.3:22715856-22715875 MS.gene011679:CDS 35.0%
CTAGTAAGCTTGATATACCT+AGG + chr8.3:22715482-22715501 MS.gene011679:CDS 35.0%
GACGAACATTTCTATGGTTT+AGG + chr8.3:22715247-22715266 MS.gene011679:CDS 35.0%
GAGAAAAACTCCAAGTATGA+TGG - chr8.3:22715349-22715368 None:intergenic 35.0%
GATATTATTGGAACAGATGG+TGG + chr8.3:22715781-22715800 MS.gene011679:CDS 35.0%
GGTGATATTATTGGAACAGA+TGG + chr8.3:22715778-22715797 MS.gene011679:CDS 35.0%
TCCATTAATAGGGAATCAAG+TGG + chr8.3:22715853-22715872 MS.gene011679:CDS 35.0%
TCTCATTGCGAAACAATACA+TGG + chr8.3:22715365-22715384 MS.gene011679:CDS 35.0%
TTGGTGAAGTATGATGACAA+TGG + chr8.3:22715811-22715830 MS.gene011679:CDS 35.0%
! AAGCTTGCTCATTGTTACAA+GGG - chr8.3:22715921-22715940 None:intergenic 35.0%
! AGAGCATTCCTCCATTAATA+GGG + chr8.3:22715843-22715862 MS.gene011679:CDS 35.0%
! TAAGCTTGCTCATTGTTACA+AGG - chr8.3:22715922-22715941 None:intergenic 35.0%
! TAGAGCATTCCTCCATTAAT+AGG + chr8.3:22715842-22715861 MS.gene011679:CDS 35.0%
! TCTATAATGGGGCTATTCAT+TGG + chr8.3:22715455-22715474 MS.gene011679:CDS 35.0%
CGTCGTAGCTACTTGTATAA+GGG - chr8.3:22715414-22715433 None:intergenic 40.0%
GAAATGTTCGTCGCGTAAAT+TGG - chr8.3:22715239-22715258 None:intergenic 40.0%
TAATGGGGCTATTCATTGGT+TGG + chr8.3:22715459-22715478 MS.gene011679:CDS 40.0%
TATCTATGGAATCCATCGAC+TGG + chr8.3:22715178-22715197 MS.gene011679:CDS 40.0%
TCGTCGTAGCTACTTGTATA+AGG - chr8.3:22715415-22715434 None:intergenic 40.0%
TGAGTCAACCGATGATTACT+TGG + chr8.3:22715276-22715295 MS.gene011679:CDS 40.0%
TGATTGGGAAAGTCATCAAC+AGG - chr8.3:22715727-22715746 None:intergenic 40.0%
TTACGCGACGAACATTTCTA+TGG + chr8.3:22715241-22715260 MS.gene011679:CDS 40.0%
! AGGTTTTCACTGTGATCCTA+TGG + chr8.3:22715573-22715592 MS.gene011679:CDS 40.0%
! ATCCTATGGATTGTGGTTTG+TGG + chr8.3:22715587-22715606 MS.gene011679:CDS 40.0%
! GATTGTGGTTTGTGGGTATT+TGG + chr8.3:22715595-22715614 MS.gene011679:CDS 40.0%
! TCCTATGGATTGTGGTTTGT+GGG + chr8.3:22715588-22715607 MS.gene011679:CDS 40.0%
ACCCACAAACCACAATCCAT+AGG - chr8.3:22715592-22715611 None:intergenic 45.0%
CAAATACCTTTGTCCCCTCT+TGG + chr8.3:22715211-22715230 MS.gene011679:CDS 45.0%
CAAGGGAGTGAAAGTAGAGA+CGG - chr8.3:22715904-22715923 None:intergenic 45.0%
CGCGTAAATTGGAACCAAGA+GGG - chr8.3:22715228-22715247 None:intergenic 45.0%
CGTAGCTACTTGTATAAGGG+TGG - chr8.3:22715411-22715430 None:intergenic 45.0%
GCGTAAATTGGAACCAAGAG+GGG - chr8.3:22715227-22715246 None:intergenic 45.0%
GCTTCTATGTCTACAGTGAG+AGG - chr8.3:22715022-22715041 None:intergenic 45.0%
GTCAACCGATGATTACTTGG+TGG + chr8.3:22715279-22715298 MS.gene011679:CDS 45.0%
TCGCGTAAATTGGAACCAAG+AGG - chr8.3:22715229-22715248 None:intergenic 45.0%
TGTTTGTGAAGTCCAGTCGA+TGG - chr8.3:22715193-22715212 None:intergenic 45.0%
! AAAGCAGGGTGCCTCTATAA+TGG + chr8.3:22715442-22715461 MS.gene011679:CDS 45.0%
! AACAGATGGTGGTACTGGAT+TGG + chr8.3:22715792-22715811 MS.gene011679:CDS 45.0%
! AAGCAGGGTGCCTCTATAAT+GGG + chr8.3:22715443-22715462 MS.gene011679:CDS 45.0%
! AGAGGAGTTTGATGATCTGG+AGG - chr8.3:22715004-22715023 None:intergenic 45.0%
! ATTGGAACAGATGGTGGTAC+TGG + chr8.3:22715787-22715806 MS.gene011679:CDS 45.0%
! CACTGTGATCCTATGGATTG+TGG + chr8.3:22715580-22715599 MS.gene011679:CDS 45.0%
! GTGAGAGGAGTTTGATGATC+TGG - chr8.3:22715007-22715026 None:intergenic 45.0%
!! ATTATAGAGGCACCCTGCTT+TGG - chr8.3:22715443-22715462 None:intergenic 45.0%
!! TTATAGAGGCACCCTGCTTT+GGG - chr8.3:22715442-22715461 None:intergenic 45.0%
ACGACGATAAGCCCAAAGCA+GGG + chr8.3:22715428-22715447 MS.gene011679:CDS 50.0%
ACGGTGTGTACATAGCCACT+TGG - chr8.3:22715885-22715904 None:intergenic 50.0%
CGGTGTGTACATAGCCACTT+GGG - chr8.3:22715884-22715903 None:intergenic 50.0%
TACGACGATAAGCCCAAAGC+AGG + chr8.3:22715427-22715446 MS.gene011679:CDS 50.0%
TTGGAACCAAGAGGGGACAA+AGG - chr8.3:22715220-22715239 None:intergenic 50.0%
! AGCAGGGTGCCTCTATAATG+GGG + chr8.3:22715444-22715463 MS.gene011679:CDS 50.0%
!! ATCAAGTGGTGGATCCCAAG+TGG + chr8.3:22715867-22715886 MS.gene011679:CDS 50.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 22714995 22715942 22714995 ID=MS.gene011679
chr8.3 mRNA 22714995 22715942 22714995 ID=MS.gene011679.t1;Parent=MS.gene011679
chr8.3 exon 22714995 22715942 22714995 ID=MS.gene011679.t1.exon1;Parent=MS.gene011679.t1
chr8.3 CDS 22714995 22715942 22714995 ID=cds.MS.gene011679.t1;Parent=MS.gene011679.t1
Gene Sequence

>MS.gene011679

ATGTCACCTCCAGATCATCAAACTCCTCTCACTGTAGACATAGAAGCATCGTTTCATGATGATTCTGCTTCCGCTTCACTTAATCTTGATTTTCTTCTTCCCAAATCTTATTATGATTTTGAAATTAAAGGTTCATGTAGAGGGTTTGTAGTTTTGCAGCACTATTATTATTCTTCAAAACTCTATCTATGGAATCCATCGACTGGACTTCACAAACAAATACCTTTGTCCCCTCTTGGTTCCAATTTACGCGACGAACATTTCTATGGTTTAGGGTATGATGAGTCAACCGATGATTACTTGGTGGTTTTAATGGCCTATTATTACAATACTGTGATCTCAGATGATATTCCATCATACTTGGAGTTTTTCTCATTGCGAAACAATACATGGAAACAAATTAAGTGTACTCACCACCCTTATACAAGTAGCTACGACGATAAGCCCAAAGCAGGGTGCCTCTATAATGGGGCTATTCATTGGTTGGCTAGTAAGCTTGATATACCTAGGGATGTTATTGTTGCATTTGATTTTACCGAAAGGAATCTTTTAGATATACATTTCCCATATGATTATGTAGGTTTTCACTGTGATCCTATGGATTGTGGTTTGTGGGTATTTGGTGAATTTCTCAGTCTATGTGTTATGAATCATTATAATAGTACAGCTGAAATATGGGTGATGAAAGAATACAAAATCAATTCGTCTTGGACAAAGACTCTCATTCTTCCTGTTGATGACTTTCCCAATCAGTACTTTTTAGCATTGTGTTGTACAAAAAATGGTGATATTATTGGAACAGATGGTGGTACTGGATTGGTGAAGTATGATGACAATGGACAGTTGCTAGAGCATTCCTCCATTAATAGGGAATCAAGTGGTGGATCCCAAGTGGCTATGTACACACCGTCTCTACTTTCACTCCCTTGTAACAATGAGCAAGCTTAA
Protein sequence

>MS.gene011679.t1

MSPPDHQTPLTVDIEASFHDDSASASLNLDFLLPKSYYDFEIKGSCRGFVVLQHYYYSSKLYLWNPSTGLHKQIPLSPLGSNLRDEHFYGLGYDESTDDYLVVLMAYYYNTVISDDIPSYLEFFSLRNNTWKQIKCTHHPYTSSYDDKPKAGCLYNGAIHWLASKLDIPRDVIVAFDFTERNLLDIHFPYDYVGFHCDPMDCGLWVFGEFLSLCVMNHYNSTAEIWVMKEYKINSSWTKTLILPVDDFPNQYFLALCCTKNGDIIGTDGGTGLVKYDDNGQLLEHSSINRESSGGSQVAMYTPSLLSLPCNNEQA