AlfalfaGEDB | MS.gene90742

M. sativa cultivar XinJiangDaYe / MS.gene90742

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90742.t1	RHN77539.1	93.2	264	18	0	1	264	118	381	7.30E-151	543.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90742.t1	G7I5X5	93.2	264	18	0	1	264	89	352	5.2e-151	543.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene50332	MS.gene90742	PPI
MS.gene90742	MS.gene024420	PPI
MS.gene27285	MS.gene90742	PPI
MS.gene064091	MS.gene90742	PPI
MS.gene064112	MS.gene90742	PPI
MS.gene045476	MS.gene90742	PPI
MS.gene90742	MS.gene54541	PPI
MS.gene90742	MS.gene036584	PPI
MS.gene24208	MS.gene90742	PPI
MS.gene50307	MS.gene90742	PPI
MS.gene034690	MS.gene90742	PPI
MS.gene044429	MS.gene90742	PPI
MS.gene87564	MS.gene90742	PPI
MS.gene90742	MS.gene053299	PPI
MS.gene51189	MS.gene90742	PPI
MS.gene90742	MS.gene28758	PPI
MS.gene85454	MS.gene90742	PPI
MS.gene90742	MS.gene42451	PPI
MS.gene96407	MS.gene90742	PPI
MS.gene77857	MS.gene90742	PPI
MS.gene51191	MS.gene90742	PPI
MS.gene90742	MS.gene69307	PPI
MS.gene064086	MS.gene90742	PPI
MS.gene033430	MS.gene90742	PPI
MS.gene50298	MS.gene90742	PPI
MS.gene67687	MS.gene90742	PPI
MS.gene036583	MS.gene90742	PPI
MS.gene055694	MS.gene90742	PPI
MS.gene90742	MS.gene58314	PPI
MS.gene90742	MS.gene67501	PPI
MS.gene90742	MS.gene96406	PPI
MS.gene71159	MS.gene90742	PPI
MS.gene96448	MS.gene90742	PPI
MS.gene77858	MS.gene90742	PPI
MS.gene058692	MS.gene90742	PPI
MS.gene041392	MS.gene90742	PPI
MS.gene033083	MS.gene90742	PPI
MS.gene90742	MS.gene40878	PPI
MS.gene69309	MS.gene90742	PPI
MS.gene63658	MS.gene90742	PPI
MS.gene033081	MS.gene90742	PPI
MS.gene031591	MS.gene90742	PPI
MS.gene90742	MS.gene058703	PPI
MS.gene035262	MS.gene90742	PPI
MS.gene90742	MS.gene047279	PPI
MS.gene070461	MS.gene90742	PPI
MS.gene51199	MS.gene90742	PPI
MS.gene90742	MS.gene012215	PPI
MS.gene90742	MS.gene032969	PPI
MS.gene064108	MS.gene90742	PPI
MS.gene58315	MS.gene90742	PPI
MS.gene87559	MS.gene90742	PPI
MS.gene90742	MS.gene42445	PPI
MS.gene041473	MS.gene90742	PPI
MS.gene90742	MS.gene26830	PPI
MS.gene90742	MS.gene22715	PPI
MS.gene033431	MS.gene90742	PPI
MS.gene90742	MS.gene51207	PPI
MS.gene041475	MS.gene90742	PPI
MS.gene033441	MS.gene90742	PPI
MS.gene90742	MS.gene36595	PPI
MS.gene90742	MS.gene061240	PPI
MS.gene063826	MS.gene90742	PPI
MS.gene060367	MS.gene90742	PPI
MS.gene90742	MS.gene041473	PPI
MS.gene44892	MS.gene90742	PPI
MS.gene90742	MS.gene50311	PPI
MS.gene036664	MS.gene90742	PPI
MS.gene90742	MS.gene035234	PPI
MS.gene90742	MS.gene058989	PPI
MS.gene90742	MS.gene041468	PPI
MS.gene57531	MS.gene90742	PPI
MS.gene064111	MS.gene90742	PPI
MS.gene90742	MS.gene041395	PPI
MS.gene26829	MS.gene90742	PPI
MS.gene39262	MS.gene90742	PPI
MS.gene90742	MS.gene42447	PPI
MS.gene58241	MS.gene90742	PPI
MS.gene053256	MS.gene90742	PPI
MS.gene90742	MS.gene51189	PPI
MS.gene045474	MS.gene90742	PPI
MS.gene75875	MS.gene90742	PPI
MS.gene058694	MS.gene90742	PPI
MS.gene064090	MS.gene90742	PPI
MS.gene54049	MS.gene90742	PPI
MS.gene43789	MS.gene90742	PPI
MS.gene90742	MS.gene044425	PPI
MS.gene006710	MS.gene90742	PPI
MS.gene072177	MS.gene90742	PPI
MS.gene58722	MS.gene90742	PPI
MS.gene90742	MS.gene40988	PPI
MS.gene90742	MS.gene59637	PPI
MS.gene90742	MS.gene24173	PPI
MS.gene033079	MS.gene90742	PPI
MS.gene061241	MS.gene90742	PPI
MS.gene24213	MS.gene90742	PPI
MS.gene64001	MS.gene90742	PPI
MS.gene43796	MS.gene90742	PPI
MS.gene90742	MS.gene27022	PPI
MS.gene58312	MS.gene90742	PPI
MS.gene36704	MS.gene90742	PPI
MS.gene90742	MS.gene87585	PPI
MS.gene90742	MS.gene023999	PPI
MS.gene77856	MS.gene90742	PPI
MS.gene90742	MS.gene036599	PPI
MS.gene24826	MS.gene90742	PPI
MS.gene036556	MS.gene90742	PPI
MS.gene58313	MS.gene90742	PPI
MS.gene066622	MS.gene90742	PPI
MS.gene44887	MS.gene90742	PPI
MS.gene85043	MS.gene90742	PPI
MS.gene39265	MS.gene90742	PPI
MS.gene90742	MS.gene036581	PPI
MS.gene51188	MS.gene90742	PPI
MS.gene63655	MS.gene90742	PPI
MS.gene90742	MS.gene035237	PPI
MS.gene44883	MS.gene90742	PPI
MS.gene90742	MS.gene000036	PPI
MS.gene88780	MS.gene90742	PPI
MS.gene90742	MS.gene50320	PPI
MS.gene41046	MS.gene90742	PPI
MS.gene063472	MS.gene90742	PPI
MS.gene87588	MS.gene90742	PPI
MS.gene017412	MS.gene90742	PPI
MS.gene90742	MS.gene87557	PPI
MS.gene90742	MS.gene035263	PPI
MS.gene80884	MS.gene90742	PPI
MS.gene90742	MS.gene036664	PPI
MS.gene90742	MS.gene053257	PPI
MS.gene51192	MS.gene90742	PPI
MS.gene009883	MS.gene90742	PPI
MS.gene90742	MS.gene51201	PPI
MS.gene58317	MS.gene90742	PPI
MS.gene90742	MS.gene009893	PPI
MS.gene044563	MS.gene90742	PPI
MS.gene069075	MS.gene90742	PPI
MS.gene90742	MS.gene50336	PPI
MS.gene033427	MS.gene90742	PPI
MS.gene90742	MS.gene77704	PPI
MS.gene40985	MS.gene90742	PPI
MS.gene041474	MS.gene90742	PPI
MS.gene27020	MS.gene90742	PPI
MS.gene90742	MS.gene50305	PPI
MS.gene58321	MS.gene90742	PPI
MS.gene86273	MS.gene90742	PPI
MS.gene041388	MS.gene90742	PPI
MS.gene062698	MS.gene90742	PPI
MS.gene57536	MS.gene90742	PPI
MS.gene96126	MS.gene90742	PPI
MS.gene019503	MS.gene90742	PPI
MS.gene90742	MS.gene68890	PPI
MS.gene51208	MS.gene90742	PPI
MS.gene016524	MS.gene90742	PPI
MS.gene50304	MS.gene90742	PPI
MS.gene90742	MS.gene86273	PPI
MS.gene90742	MS.gene036663	PPI
MS.gene045475	MS.gene90742	PPI
MS.gene59943	MS.gene90742	PPI
MS.gene90742	MS.gene57525	PPI
MS.gene90744	MS.gene90742	PPI
MS.gene51204	MS.gene90742	PPI
MS.gene58783	MS.gene90742	PPI
MS.gene90742	MS.gene63657	PPI
MS.gene88776	MS.gene90742	PPI
MS.gene31587	MS.gene90742	PPI
MS.gene036557	MS.gene90742	PPI
MS.gene041393	MS.gene90742	PPI
MS.gene90742	MS.gene023996	PPI
MS.gene90742	MS.gene030114	PPI
MS.gene90742	MS.gene045473	PPI
MS.gene90742	MS.gene50301	PPI
MS.gene90742	MS.gene031590	PPI
MS.gene84698	MS.gene90742	PPI
MS.gene90742	MS.gene064086	PPI
MS.gene009891	MS.gene90742	PPI
MS.gene066641	MS.gene90742	PPI
MS.gene82082	MS.gene90742	PPI
MS.gene000038	MS.gene90742	PPI
MS.gene67501	MS.gene90742	PPI
MS.gene90742	MS.gene50332	PPI
MS.gene90742	MS.gene024979	PPI
MS.gene57535	MS.gene90742	PPI
MS.gene025887	MS.gene90742	PPI
MS.gene019507	MS.gene90742	PPI
MS.gene041470	MS.gene90742	PPI
MS.gene87200	MS.gene90742	PPI
MS.gene90742	MS.gene24826	PPI
MS.gene058701	MS.gene90742	PPI
MS.gene90742	MS.gene063472	PPI
MS.gene90742	MS.gene43790	PPI
MS.gene90742	MS.gene034680	PPI
MS.gene015089	MS.gene90742	PPI
MS.gene90743	MS.gene90742	PPI
MS.gene44885	MS.gene90742	PPI
MS.gene011679	MS.gene90742	PPI
MS.gene060370	MS.gene90742	PPI
MS.gene066635	MS.gene90742	PPI
MS.gene57533	MS.gene90742	PPI
MS.gene90742	MS.gene88416	PPI
MS.gene032970	MS.gene90742	PPI
MS.gene90742	MS.gene003076	PPI
MS.gene87586	MS.gene90742	PPI
MS.gene90742	MS.gene024009	PPI
MS.gene90742	MS.gene009892	PPI
MS.gene68890	MS.gene90742	PPI
MS.gene40887	MS.gene90742	PPI
MS.gene50339	MS.gene90742	PPI
MS.gene90742	MS.gene006705	PPI
MS.gene046958	MS.gene90742	PPI
MS.gene90742	MS.gene061241	PPI
MS.gene034688	MS.gene90742	PPI
MS.gene060366	MS.gene90742	PPI
MS.gene48221	MS.gene90742	PPI
MS.gene90742	MS.gene38220	PPI
MS.gene90742	MS.gene40986	PPI
MS.gene57529	MS.gene90742	PPI
MS.gene90742	MS.gene041394	PPI
MS.gene90742	MS.gene03060	PPI
MS.gene90742	MS.gene024011	PPI
MS.gene90742	MS.gene58241	PPI
MS.gene90742	MS.gene064109	PPI
MS.gene90742	MS.gene058696	PPI
MS.gene041395	MS.gene90742	PPI
MS.gene40886	MS.gene90742	PPI
MS.gene40902	MS.gene90742	PPI
MS.gene90742	MS.gene035238	PPI
MS.gene90742	MS.gene064114	PPI
MS.gene27051	MS.gene90742	PPI
MS.gene021553	MS.gene90742	PPI
MS.gene060368	MS.gene90742	PPI
MS.gene033875	MS.gene90742	PPI
MS.gene77704	MS.gene90742	PPI
MS.gene036582	MS.gene90742	PPI
MS.gene27021	MS.gene90742	PPI
MS.gene066620	MS.gene90742	PPI
MS.gene035236	MS.gene90742	PPI
MS.gene90742	MS.gene80610	PPI
MS.gene041394	MS.gene90742	PPI
MS.gene059157	MS.gene90742	PPI
MS.gene58781	MS.gene90742	PPI
MS.gene57717	MS.gene90742	PPI
MS.gene028390	MS.gene90742	PPI
MS.gene011106	MS.gene90742	PPI
MS.gene033440	MS.gene90742	PPI
MS.gene62398	MS.gene90742	PPI
MS.gene60027	MS.gene90742	PPI
MS.gene038756	MS.gene90742	PPI
MS.gene90742	MS.gene041391	PPI
MS.gene35068	MS.gene90742	PPI
MS.gene041390	MS.gene90742	PPI
MS.gene24286	MS.gene90742	PPI
MS.gene058693	MS.gene90742	PPI
MS.gene92376	MS.gene90742	PPI
MS.gene000035	MS.gene90742	PPI
MS.gene50329	MS.gene90742	PPI
MS.gene070462	MS.gene90742	PPI
MS.gene31637	MS.gene90742	PPI
MS.gene87573	MS.gene90742	PPI
MS.gene90742	MS.gene045474	PPI
MS.gene57537	MS.gene90742	PPI
MS.gene90742	MS.gene036558	PPI
MS.gene019504	MS.gene90742	PPI
MS.gene034762	MS.gene90742	PPI
MS.gene90742	MS.gene87554	PPI
MS.gene059156	MS.gene90742	PPI
MS.gene90742	MS.gene40984	PPI
MS.gene90742	MS.gene064108	PPI
MS.gene90742	MS.gene048193	PPI
MS.gene90742	MS.gene016220	PPI
MS.gene58716	MS.gene90742	PPI
MS.gene68580	MS.gene90742	PPI
MS.gene90742	MS.gene024008	PPI
MS.gene033444	MS.gene90742	PPI
MS.gene019505	MS.gene90742	PPI
MS.gene50306	MS.gene90742	PPI
MS.gene58785	MS.gene90742	PPI
MS.gene066639	MS.gene90742	PPI
MS.gene26949	MS.gene90742	PPI
MS.gene50309	MS.gene90742	PPI
MS.gene036760	MS.gene90742	PPI
MS.gene90742	MS.gene58240	PPI
MS.gene58311	MS.gene90742	PPI
MS.gene90742	MS.gene27284	PPI
MS.gene033432	MS.gene90742	PPI
MS.gene90742	MS.gene48221	PPI
MS.gene033426	MS.gene90742	PPI
MS.gene59639	MS.gene90742	PPI
MS.gene031590	MS.gene90742	PPI
MS.gene036584	MS.gene90742	PPI
MS.gene50327	MS.gene90742	PPI
MS.gene90742	MS.gene063474	PPI
MS.gene035261	MS.gene90742	PPI
MS.gene90742	MS.gene51190	PPI
MS.gene90742	MS.gene58319	PPI
MS.gene90742	MS.gene044426	PPI
MS.gene90742	MS.gene034681	PPI
MS.gene010758	MS.gene90742	PPI
MS.gene58239	MS.gene90742	PPI
MS.gene063670	MS.gene90742	PPI
MS.gene90742	MS.gene57532	PPI
MS.gene57530	MS.gene90742	PPI
MS.gene90742	MS.gene033442	PPI
MS.gene066626	MS.gene90742	PPI
MS.gene019506	MS.gene90742	PPI
MS.gene50326	MS.gene90742	PPI
MS.gene42451	MS.gene90742	PPI
MS.gene51200	MS.gene90742	PPI
MS.gene90742	MS.gene44428	PPI
MS.gene90742	MS.gene058669	PPI
MS.gene024002	MS.gene90742	PPI
MS.gene90742	MS.gene066120	PPI
MS.gene88774	MS.gene90742	PPI
MS.gene90742	MS.gene041489	PPI
MS.gene034686	MS.gene90742	PPI
MS.gene40982	MS.gene90742	PPI
MS.gene42452	MS.gene90742	PPI
MS.gene90742	MS.gene024000	PPI
MS.gene063414	MS.gene90742	PPI
MS.gene009892	MS.gene90742	PPI
MS.gene90742	MS.gene034677	PPI
MS.gene57527	MS.gene90742	PPI
MS.gene036662	MS.gene90742	PPI
MS.gene87563	MS.gene90742	PPI
MS.gene90742	MS.gene58316	PPI
MS.gene57526	MS.gene90742	PPI
MS.gene24212	MS.gene90742	PPI
MS.gene90742	MS.gene87584	PPI
MS.gene051820	MS.gene90742	PPI
MS.gene26957	MS.gene90742	PPI
MS.gene97996	MS.gene90742	PPI
MS.gene90742	MS.gene58315	PPI
MS.gene035235	MS.gene90742	PPI
MS.gene40988	MS.gene90742	PPI
MS.gene58320	MS.gene90742	PPI
MS.gene81242	MS.gene90742	PPI
MS.gene26101	MS.gene90742	PPI
MS.gene066120	MS.gene90742	PPI
MS.gene27283	MS.gene90742	PPI
MS.gene64203	MS.gene90742	PPI
MS.gene045140	MS.gene90742	PPI
MS.gene024004	MS.gene90742	PPI
MS.gene42444	MS.gene90742	PPI
MS.gene90742	MS.gene87564	PPI
MS.gene51202	MS.gene90742	PPI
MS.gene059101	MS.gene90742	PPI
MS.gene90742	MS.gene85454	PPI
MS.gene44886	MS.gene90742	PPI
MS.gene87562	MS.gene90742	PPI
MS.gene066623	MS.gene90742	PPI
MS.gene40904	MS.gene90742	PPI
MS.gene90742	MS.gene57538	PPI
MS.gene90742	MS.gene058693	PPI
MS.gene90742	MS.gene27319	PPI
MS.gene87569	MS.gene90742	PPI
MS.gene064104	MS.gene90742	PPI
MS.gene40878	MS.gene90742	PPI
MS.gene041491	MS.gene90742	PPI
MS.gene033443	MS.gene90742	PPI
MS.gene51207	MS.gene90742	PPI
MS.gene50337	MS.gene90742	PPI
MS.gene90742	MS.gene064083	PPI
MS.gene059096	MS.gene90742	PPI
MS.gene57528	MS.gene90742	PPI
MS.gene50297	MS.gene90742	PPI
MS.gene006711	MS.gene90742	PPI
MS.gene90742	MS.gene58783	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90742.t1	MTR_1g023400	93.182	264	18	0	1	264	89	352	0.0	520
MS.gene90742.t1	MTR_1g022200	61.871	278	90	8	5	270	102	375	1.93e-106	313
MS.gene90742.t1	MTR_1g009110	46.209	277	129	9	1	265	111	379	1.75e-68	216
MS.gene90742.t1	MTR_4g080200	48.754	281	114	12	1	264	82	349	5.12e-68	214
MS.gene90742.t1	MTR_1g023430	69.014	142	38	2	132	270	40	178	1.03e-62	195
MS.gene90742.t1	MTR_1g037540	43.206	287	130	13	1	264	124	400	4.75e-55	182
MS.gene90742.t1	MTR_1g024125	73.214	112	29	1	137	247	38	149	2.26e-53	171
MS.gene90742.t1	MTR_1g022105	39.357	249	104	6	1	249	120	321	3.31e-49	165
MS.gene90742.t1	MTR_1g008000	35.231	281	112	15	3	265	41	269	1.23e-24	99.8
MS.gene90742.t1	MTR_0064s0160	25.784	287	173	13	2	263	148	419	5.67e-14	71.6
MS.gene90742.t1	MTR_2g021950	23.944	284	183	11	3	263	120	393	1.99e-11	63.9
MS.gene90742.t1	MTR_2g426090	25.939	293	176	14	1	264	96	376	3.06e-11	63.5
MS.gene90742.t1	MTR_1g061330	24.199	281	166	13	5	264	103	357	6.86e-11	62.4
MS.gene90742.t1	MTR_5g037680	26.293	232	144	10	5	226	126	340	8.73e-11	62.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 77 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTCCCGTCATCTTGAGCATT+TGG	0.258740	1.4:+1337340	MS.gene90742:CDS
AATCAACATCAATTTGAAAT+TGG	0.285324	1.4:-1337518	None:intergenic
GCCCTCTGAGTTGGTGAAAC+TGG	0.301844	1.4:-1337224	None:intergenic
TGGTGTGTGGTCTTAGTAAA+AGG	0.318775	1.4:-1337087	None:intergenic
TAATTCCATCATAACTAGTA+TGG	0.350426	1.4:-1337002	None:intergenic
ATAGAATATTTGCAACAAAA+TGG	0.364437	1.4:-1337182	None:intergenic
GACTCATGCATGTATGGTTT+CGG	0.365854	1.4:+1336937	MS.gene90742:CDS
TCCCGTCATCTTGAGCATTT+GGG	0.381975	1.4:+1337341	MS.gene90742:CDS
TTGTTAACAGCGTTTATCAT+TGG	0.387639	1.4:+1337133	MS.gene90742:CDS
ATAATTTAAGTACCAACTCT+TGG	0.412072	1.4:+1337043	MS.gene90742:CDS
CATCTTGAGCATTTGGGTGA+TGG	0.434538	1.4:+1337347	MS.gene90742:CDS
GACAGCGACTCATGCATGTA+TGG	0.435390	1.4:+1336931	MS.gene90742:CDS
CGGTGGACCTCTCTAGTTGT+TGG	0.437420	1.4:-1336886	None:intergenic
CCTTGTCGACCTATCTAGCT+AGG	0.454046	1.4:+1337577	MS.gene90742:CDS
AACTTTGAAGTTGATGTTGT+TGG	0.457396	1.4:-1336971	None:intergenic
ATGATTATAGCAACTTTGCA+TGG	0.461665	1.4:+1337259	MS.gene90742:CDS
TCTGTCTCCAAGGTTTGTGT+TGG	0.467072	1.4:+1336824	MS.gene90742:CDS
AAACTCCATACTAGTTATGA+TGG	0.471735	1.4:+1336997	MS.gene90742:CDS
AAAGGAAGAGGATGTTCAGT+TGG	0.476611	1.4:-1337069	None:intergenic
GGTGGACCTCTCTAGTTGTT+GGG	0.479668	1.4:-1336885	None:intergenic
CAAATCCTTGGAGGAAAGGT+TGG	0.481459	1.4:+1337453	MS.gene90742:CDS
ACTTTGAAGTTGATGTTGTT+GGG	0.482647	1.4:-1336970	None:intergenic
CTATCTAGCTAGGGCACACT+AGG	0.484374	1.4:+1337587	MS.gene90742:CDS
AAGGAAGAGGATGTTCAGTT+GGG	0.484768	1.4:-1337068	None:intergenic
GCCGAGATCAAAGGTTCCCT+TGG	0.490016	1.4:+1337291	MS.gene90742:CDS
CTAGTGTGCCCTAGCTAGAT+AGG	0.491771	1.4:-1337586	None:intergenic
ACAAGAGTGCTATATCTAGA+AGG	0.495385	1.4:-1337114	None:intergenic
TGTTTCGTATGTGTGGCCTT+TGG	0.504996	1.4:+1337418	MS.gene90742:CDS
TATGAAACCAACACAAACCT+TGG	0.505418	1.4:-1336831	None:intergenic
GTTGATGTTGTTGGGATCAT+CGG	0.508372	1.4:-1336962	None:intergenic
GTCGACAAGGGAGCTATGCT+TGG	0.515430	1.4:-1337564	None:intergenic
ACCCAAATGCTCAAGATGAC+GGG	0.515580	1.4:-1337342	None:intergenic
AAGAATGGCGATCAAATCCT+TGG	0.518473	1.4:+1337441	MS.gene90742:CDS
GTTCTCCAACCTTTCCTCCA+AGG	0.525401	1.4:-1337458	None:intergenic
ATGTGTGGCCTTTGGAAGAA+TGG	0.525913	1.4:+1337426	MS.gene90742:CDS
TGATTATAGCAACTTTGCAT+GGG	0.536071	1.4:+1337260	MS.gene90742:CDS
TTCAGTTGGGGTCCAAGAGT+TGG	0.536792	1.4:-1337055	None:intergenic
ACCAAGGGAACCTTTGATCT+CGG	0.537068	1.4:-1337292	None:intergenic
CGATCAAATCCTTGGAGGAA+AGG	0.537340	1.4:+1337449	MS.gene90742:CDS
TTTGATCGCCATTCTTCCAA+AGG	0.545314	1.4:-1337434	None:intergenic
CACCCAAATGCTCAAGATGA+CGG	0.555873	1.4:-1337343	None:intergenic
CTCACATCATATGACTATCA+AGG	0.557817	1.4:+1337483	MS.gene90742:CDS
GATTGTGTTGCCGAGATCAA+AGG	0.560123	1.4:+1337282	MS.gene90742:CDS
TGGATTATAAGCAGTTCATA+CGG	0.560788	1.4:+1337153	MS.gene90742:CDS
TTTATAAGAATGGAATCATA+CGG	0.562387	1.4:+1336784	None:intergenic
GTGGTCTTAGTAAAAGGAAG+AGG	0.563530	1.4:-1337081	None:intergenic
GTCTTGATGAGTTGATTATG+TGG	0.567130	1.4:+1336860	MS.gene90742:CDS
GAATCATACGGTAGTTGCAA+TGG	0.573781	1.4:+1336796	MS.gene90742:CDS
TCGCTGTCAAGGCAGAGCCT+CGG	0.581840	1.4:-1336916	None:intergenic
TGCTATATCTAGAAGGACAT+TGG	0.583334	1.4:-1337107	None:intergenic
ACATGCATGAGTCGCTGTCA+AGG	0.587596	1.4:-1336927	None:intergenic
CTATAATCATATGAGAAGGT+TGG	0.594270	1.4:-1337246	None:intergenic
AGAAGGTTGGCCCTCTGAGT+TGG	0.594377	1.4:-1337233	None:intergenic
AATGGCGATCAAATCCTTGG+AGG	0.596817	1.4:+1337444	MS.gene90742:CDS
GGCAGAGCCTCGGAGGAACA+CGG	0.598335	1.4:-1336906	None:intergenic
CTTGTCGACCTATCTAGCTA+GGG	0.600363	1.4:+1337578	MS.gene90742:CDS
ACCAGTTTCACCAACTCAGA+GGG	0.601175	1.4:+1337223	MS.gene90742:CDS
TACGAAACATTGACACAAGT+GGG	0.601347	1.4:-1337404	None:intergenic
GTTGCTATAATCATATGAGA+AGG	0.609576	1.4:-1337250	None:intergenic
GTGTCAATGTTTCGTATGTG+TGG	0.615188	1.4:+1337411	MS.gene90742:CDS
TACAATGCACAACATAACCA+AGG	0.616377	1.4:-1337308	None:intergenic
CTGTCAAGGCAGAGCCTCGG+AGG	0.616821	1.4:-1336913	None:intergenic
ATACGAAACATTGACACAAG+TGG	0.622567	1.4:-1337405	None:intergenic
CCTAGCTAGATAGGTCGACA+AGG	0.638285	1.4:-1337577	None:intergenic
ACAATGCACAACATAACCAA+GGG	0.652154	1.4:-1337307	None:intergenic
AGGTCCACCGTGTTCCTCCG+AGG	0.662733	1.4:+1336899	MS.gene90742:CDS
AACCAGTTTCACCAACTCAG+AGG	0.670970	1.4:+1337222	MS.gene90742:CDS
GGGTGATGGATCAAAGTGGA+TGG	0.671155	1.4:+1337361	MS.gene90742:CDS
TGATGGAATTATGAGATCAG+CGG	0.673695	1.4:+1337014	MS.gene90742:CDS
GTGGAACCCAACAACTAGAG+AGG	0.673963	1.4:+1336879	MS.gene90742:CDS
AGGAAGAGGATGTTCAGTTG+GGG	0.674344	1.4:-1337067	None:intergenic
TGATAGTCATATGATGTGAG+CGG	0.685126	1.4:-1337480	None:intergenic
GTTGGTGAAACTGGTTGTTG+CGG	0.693105	1.4:-1337215	None:intergenic
TCTAGAAGGACATTGGTGTG+TGG	0.699232	1.4:-1337100	None:intergenic
CTAGCTAGATAGGTCGACAA+GGG	0.718320	1.4:-1337576	None:intergenic
ATTTGGGTGATGGATCAAAG+TGG	0.755177	1.4:+1337357	MS.gene90742:CDS
AGAGCCTCGGAGGAACACGG+TGG	0.797176	1.4:-1336903	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAGAATATTTGCAACAAAA+TGG	-	chr1.4:1337185-1337204	None:intergenic	20.0%
!!!	AATCAACATCAATTTGAAAT+TGG	-	chr1.4:1337521-1337540	None:intergenic	20.0%
!	ATAATTTAAGTACCAACTCT+TGG	+	chr1.4:1337043-1337062	MS.gene90742:CDS	25.0%
!	TAATTCCATCATAACTAGTA+TGG	-	chr1.4:1337005-1337024	None:intergenic	25.0%
	AAACTCCATACTAGTTATGA+TGG	+	chr1.4:1336997-1337016	MS.gene90742:CDS	30.0%
	ATGATTATAGCAACTTTGCA+TGG	+	chr1.4:1337259-1337278	MS.gene90742:CDS	30.0%
	CTATAATCATATGAGAAGGT+TGG	-	chr1.4:1337249-1337268	None:intergenic	30.0%
	GTTGCTATAATCATATGAGA+AGG	-	chr1.4:1337253-1337272	None:intergenic	30.0%
	TGATTATAGCAACTTTGCAT+GGG	+	chr1.4:1337260-1337279	MS.gene90742:CDS	30.0%
	TGGATTATAAGCAGTTCATA+CGG	+	chr1.4:1337153-1337172	MS.gene90742:CDS	30.0%
	TTGTTAACAGCGTTTATCAT+TGG	+	chr1.4:1337133-1337152	MS.gene90742:CDS	30.0%
!!	AACTTTGAAGTTGATGTTGT+TGG	-	chr1.4:1336974-1336993	None:intergenic	30.0%
!!	ACTTTGAAGTTGATGTTGTT+GGG	-	chr1.4:1336973-1336992	None:intergenic	30.0%
	ACAATGCACAACATAACCAA+GGG	-	chr1.4:1337310-1337329	None:intergenic	35.0%
	ATACGAAACATTGACACAAG+TGG	-	chr1.4:1337408-1337427	None:intergenic	35.0%
	CTCACATCATATGACTATCA+AGG	+	chr1.4:1337483-1337502	MS.gene90742:CDS	35.0%
	TACAATGCACAACATAACCA+AGG	-	chr1.4:1337311-1337330	None:intergenic	35.0%
	TACGAAACATTGACACAAGT+GGG	-	chr1.4:1337407-1337426	None:intergenic	35.0%
	TATGAAACCAACACAAACCT+TGG	-	chr1.4:1336834-1336853	None:intergenic	35.0%
	TGATAGTCATATGATGTGAG+CGG	-	chr1.4:1337483-1337502	None:intergenic	35.0%
	TGATGGAATTATGAGATCAG+CGG	+	chr1.4:1337014-1337033	MS.gene90742:CDS	35.0%
	TGCTATATCTAGAAGGACAT+TGG	-	chr1.4:1337110-1337129	None:intergenic	35.0%
!!	ACAAGAGTGCTATATCTAGA+AGG	-	chr1.4:1337117-1337136	None:intergenic	35.0%
!!	GTCTTGATGAGTTGATTATG+TGG	+	chr1.4:1336860-1336879	MS.gene90742:CDS	35.0%
	AAAGGAAGAGGATGTTCAGT+TGG	-	chr1.4:1337072-1337091	None:intergenic	40.0%
	AAGAATGGCGATCAAATCCT+TGG	+	chr1.4:1337441-1337460	MS.gene90742:CDS	40.0%
	AAGGAAGAGGATGTTCAGTT+GGG	-	chr1.4:1337071-1337090	None:intergenic	40.0%
	GAATCATACGGTAGTTGCAA+TGG	+	chr1.4:1336796-1336815	MS.gene90742:CDS	40.0%
	GACTCATGCATGTATGGTTT+CGG	+	chr1.4:1336937-1336956	MS.gene90742:CDS	40.0%
	GTGTCAATGTTTCGTATGTG+TGG	+	chr1.4:1337411-1337430	MS.gene90742:CDS	40.0%
	GTTGATGTTGTTGGGATCAT+CGG	-	chr1.4:1336965-1336984	None:intergenic	40.0%
	TTTGATCGCCATTCTTCCAA+AGG	-	chr1.4:1337437-1337456	None:intergenic	40.0%
!	GTGGTCTTAGTAAAAGGAAG+AGG	-	chr1.4:1337084-1337103	None:intergenic	40.0%
!	TGGCACAAAAAGTGCAACAT+TGG	+	chr1.4:1337381-1337400	MS.gene90742:CDS	40.0%
!	TGGTGTGTGGTCTTAGTAAA+AGG	-	chr1.4:1337090-1337109	None:intergenic	40.0%
!!	ATTTGGGTGATGGATCAAAG+TGG	+	chr1.4:1337357-1337376	MS.gene90742:CDS	40.0%
	AACCAGTTTCACCAACTCAG+AGG	+	chr1.4:1337222-1337241	MS.gene90742:CDS	45.0%
	AATGGCGATCAAATCCTTGG+AGG	+	chr1.4:1337444-1337463	MS.gene90742:CDS	45.0%
	ACCAAGGGAACCTTTGATCT+CGG	-	chr1.4:1337295-1337314	None:intergenic	45.0%
	ACCAGTTTCACCAACTCAGA+GGG	+	chr1.4:1337223-1337242	MS.gene90742:CDS	45.0%
	ACCCAAATGCTCAAGATGAC+GGG	-	chr1.4:1337345-1337364	None:intergenic	45.0%
	AGGAAGAGGATGTTCAGTTG+GGG	-	chr1.4:1337070-1337089	None:intergenic	45.0%
	CAAATCCTTGGAGGAAAGGT+TGG	+	chr1.4:1337453-1337472	MS.gene90742:CDS	45.0%
	CACCCAAATGCTCAAGATGA+CGG	-	chr1.4:1337346-1337365	None:intergenic	45.0%
	CATCTTGAGCATTTGGGTGA+TGG	+	chr1.4:1337347-1337366	MS.gene90742:CDS	45.0%
	CGATCAAATCCTTGGAGGAA+AGG	+	chr1.4:1337449-1337468	MS.gene90742:CDS	45.0%
	CTAGCTAGATAGGTCGACAA+GGG	-	chr1.4:1337579-1337598	None:intergenic	45.0%
	CTTGTCGACCTATCTAGCTA+GGG	+	chr1.4:1337578-1337597	MS.gene90742:CDS	45.0%
	GATTGTGTTGCCGAGATCAA+AGG	+	chr1.4:1337282-1337301	MS.gene90742:CDS	45.0%
	TCCCGTCATCTTGAGCATTT+GGG	+	chr1.4:1337341-1337360	MS.gene90742:CDS	45.0%
	TCTAGAAGGACATTGGTGTG+TGG	-	chr1.4:1337103-1337122	None:intergenic	45.0%
	TCTGTCTCCAAGGTTTGTGT+TGG	+	chr1.4:1336824-1336843	MS.gene90742:CDS	45.0%
	TGTTTCGTATGTGTGGCCTT+TGG	+	chr1.4:1337418-1337437	MS.gene90742:CDS	45.0%
!	AATGGCGTTTTCTGTCTCCA+AGG	+	chr1.4:1336814-1336833	MS.gene90742:CDS	45.0%
!	ATGTGTGGCCTTTGGAAGAA+TGG	+	chr1.4:1337426-1337445	MS.gene90742:CDS	45.0%
!	GTTGGTGAAACTGGTTGTTG+CGG	-	chr1.4:1337218-1337237	None:intergenic	45.0%
	ACATGCATGAGTCGCTGTCA+AGG	-	chr1.4:1336930-1336949	None:intergenic	50.0%
	CCTAGCTAGATAGGTCGACA+AGG	-	chr1.4:1337580-1337599	None:intergenic	50.0%
	CCTTGTCGACCTATCTAGCT+AGG	+	chr1.4:1337577-1337596	MS.gene90742:CDS	50.0%
	CTAGTGTGCCCTAGCTAGAT+AGG	-	chr1.4:1337589-1337608	None:intergenic	50.0%
	CTCCCGTCATCTTGAGCATT+TGG	+	chr1.4:1337340-1337359	MS.gene90742:CDS	50.0%
	GACAGCGACTCATGCATGTA+TGG	+	chr1.4:1336931-1336950	MS.gene90742:CDS	50.0%
	GGTGGACCTCTCTAGTTGTT+GGG	-	chr1.4:1336888-1336907	None:intergenic	50.0%
	GTGGAACCCAACAACTAGAG+AGG	+	chr1.4:1336879-1336898	MS.gene90742:CDS	50.0%
	GTTCTCCAACCTTTCCTCCA+AGG	-	chr1.4:1337461-1337480	None:intergenic	50.0%
	TTCAGTTGGGGTCCAAGAGT+TGG	-	chr1.4:1337058-1337077	None:intergenic	50.0%
!!	GGGTGATGGATCAAAGTGGA+TGG	+	chr1.4:1337361-1337380	MS.gene90742:CDS	50.0%
	CGGTGGACCTCTCTAGTTGT+TGG	-	chr1.4:1336889-1336908	None:intergenic	55.0%
	GCCGAGATCAAAGGTTCCCT+TGG	+	chr1.4:1337291-1337310	MS.gene90742:CDS	55.0%
	GTCGACAAGGGAGCTATGCT+TGG	-	chr1.4:1337567-1337586	None:intergenic	55.0%
!	AGAAGGTTGGCCCTCTGAGT+TGG	-	chr1.4:1337236-1337255	None:intergenic	55.0%
!!	GCCCTCTGAGTTGGTGAAAC+TGG	-	chr1.4:1337227-1337246	None:intergenic	55.0%
	TCGCTGTCAAGGCAGAGCCT+CGG	-	chr1.4:1336919-1336938	None:intergenic	60.0%
	AGAGCCTCGGAGGAACACGG+TGG	-	chr1.4:1336906-1336925	None:intergenic	65.0%
	AGGTCCACCGTGTTCCTCCG+AGG	+	chr1.4:1336899-1336918	MS.gene90742:CDS	65.0%
	CTGTCAAGGCAGAGCCTCGG+AGG	-	chr1.4:1336916-1336935	None:intergenic	65.0%
	GGCAGAGCCTCGGAGGAACA+CGG	-	chr1.4:1336909-1336928	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	1336793	1337608	1336793	ID=MS.gene90742
chr1.4	mRNA	1336793	1337608	1336793	ID=MS.gene90742.t1;Parent=MS.gene90742
chr1.4	exon	1336793	1337608	1336793	ID=MS.gene90742.t1.exon1;Parent=MS.gene90742.t1
chr1.4	CDS	1336793	1337608	1336793	ID=cds.MS.gene90742.t1;Parent=MS.gene90742.t1

Gene Sequence

>MS.gene90742

ATGGAATCATACGGTAGTTGCAATGGCGTTTTCTGTCTCCAAGGTTTGTGTTGGTTTCATAAGAGTTGTCTTGATGAGTTGATTATGTGGAACCCAACAACTAGAGAGGTCCACCGTGTTCCTCCGAGGCTCTGCCTTGACAGCGACTCATGCATGTATGGTTTCGGTGCCGATGATCCCAACAACATCAACTTCAAAGTTGTGAAACTCCATACTAGTTATGATGGAATTATGAGATCAGCGGAAGTTTATAATTTAAGTACCAACTCTTGGACCCCAACTGAACATCCTCTTCCTTTTACTAAGACCACACACCAATGTCCTTCTAGATATAGCACTCTTGTTAACAGCGTTTATCATTGGATTATAAGCAGTTCATACGGCAATCGCCATTTTGTTGCAAATATTCTATGCTTTGACTTCCGCAACAACCAGTTTCACCAACTCAGAGGGCCAACCTTCTCATATGATTATAGCAACTTTGCATGGGATTGTGTTGCCGAGATCAAAGGTTCCCTTGGTTATGTTGTGCATTGTAACTTCAATGCTCCCGTCATCTTGAGCATTTGGGTGATGGATCAAAGTGGATGGCACAAAAAGTGCAACATTGGCCCACTTGTGTCAATGTTTCGTATGTGTGGCCTTTGGAAGAATGGCGATCAAATCCTTGGAGGAAAGGTTGGAGAACCGCTCACATCATATGACTATCAAGGTAACTCACTTGACCAATTTCAAATTGATGTTGATTATATTAAACTTCATGAGTATGTGCCAAGCATAGCTCCCTTGTCGACCTATCTAGCTAGGGCACACTAG

Protein sequence

>MS.gene90742.t1

MESYGSCNGVFCLQGLCWFHKSCLDELIMWNPTTREVHRVPPRLCLDSDSCMYGFGADDPNNINFKVVKLHTSYDGIMRSAEVYNLSTNSWTPTEHPLPFTKTTHQCPSRYSTLVNSVYHWIISSSYGNRHFVANILCFDFRNNQFHQLRGPTFSYDYSNFAWDCVAEIKGSLGYVVHCNFNAPVILSIWVMDQSGWHKKCNIGPLVSMFRMCGLWKNGDQILGGKVGEPLTSYDYQGNSLDQFQIDVDYIKLHEYVPSIAPLSTYLARAH