AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene024000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024000.t1 MTR_7g079370 60.897 312 110 6 8 312 47 353 1.23e-115 338
MS.gene024000.t1 MTR_7g079400 54.574 317 126 7 9 315 29 337 4.27e-101 300
MS.gene024000.t1 MTR_8g102520 49.844 321 117 9 1 315 40 322 9.27e-86 261
MS.gene024000.t1 MTR_2g048580 49.679 312 113 11 9 315 70 342 2.28e-82 253
MS.gene024000.t1 MTR_7g079420 51.786 280 86 7 45 315 905 1144 2.09e-72 242
MS.gene024000.t1 MTR_4g117720 44.201 319 157 11 1 311 68 373 2.23e-69 221
MS.gene024000.t1 MTR_3g103020 43.590 312 153 11 12 315 82 378 9.09e-64 206
MS.gene024000.t1 MTR_6g060650 41.433 321 157 11 9 314 68 372 4.94e-59 194
MS.gene024000.t1 MTR_5g070080 41.441 333 153 12 9 315 70 386 3.49e-58 192
MS.gene024000.t1 MTR_5g097210 42.138 318 154 12 1 310 63 358 3.51e-58 191
MS.gene024000.t1 MTR_1g055135 40.127 314 174 8 7 315 71 375 4.01e-58 191
MS.gene024000.t1 MTR_8g098830 57.831 166 68 1 116 281 31 194 1.05e-57 186
MS.gene024000.t1 MTR_5g070130 41.083 314 162 10 9 311 71 372 6.47e-56 186
MS.gene024000.t1 MTR_4g122850 39.062 320 177 11 3 315 56 364 1.00e-55 185
MS.gene024000.t1 MTR_4g023080 39.869 306 150 11 9 308 70 347 1.76e-54 181
MS.gene024000.t1 MTR_3g034180 39.815 324 174 10 1 314 176 488 2.41e-53 182
MS.gene024000.t1 MTR_4g117750 40.190 316 162 10 7 314 62 358 1.27e-52 180
MS.gene024000.t1 MTR_4g117750 44.681 94 46 3 222 313 392 481 1.67e-12 68.2
MS.gene024000.t1 MTR_5g070088 39.144 327 163 10 9 311 67 381 2.45e-52 177
MS.gene024000.t1 MTR_4g117850 40.645 310 157 13 7 308 83 373 8.29e-52 175
MS.gene024000.t1 MTR_3g034160 40.373 322 159 12 9 314 70 374 2.13e-51 174
MS.gene024000.t1 MTR_3g034130 39.731 297 162 10 1 287 62 351 9.00e-51 172
MS.gene024000.t1 MTR_4g109270 40.123 324 164 13 1 315 62 364 1.35e-50 171
MS.gene024000.t1 MTR_4g021785 38.158 304 159 9 9 308 70 348 3.22e-50 170
MS.gene024000.t1 MTR_4g109280 41.509 318 151 12 9 315 66 359 6.44e-50 169
MS.gene024000.t1 MTR_8g433040 39.159 309 159 10 12 315 80 364 9.27e-50 169
MS.gene024000.t1 MTR_8g032380 39.159 309 159 10 12 315 80 364 9.27e-50 169
MS.gene024000.t1 MTR_4g117770 41.121 321 165 12 3 315 63 367 1.22e-49 169
MS.gene024000.t1 MTR_4g117810 41.121 321 165 12 3 315 63 367 1.22e-49 169
MS.gene024000.t1 MTR_4g118380 38.614 303 157 7 1 282 60 354 3.66e-49 167
MS.gene024000.t1 MTR_4g023130 38.095 273 139 8 40 308 60 306 3.74e-49 166
MS.gene024000.t1 MTR_4g117780 40.705 312 161 13 12 315 72 367 1.30e-48 166
MS.gene024000.t1 MTR_4g116330 38.154 325 172 12 1 315 75 380 1.46e-48 167
MS.gene024000.t1 MTR_8g032390 40.074 272 146 8 44 311 113 371 3.15e-48 166
MS.gene024000.t1 MTR_1g055195 37.634 279 149 6 41 315 221 478 8.03e-48 167
MS.gene024000.t1 MTR_4g094365 37.383 321 178 10 1 315 61 364 4.35e-46 160
MS.gene024000.t1 MTR_4g023070 37.846 325 154 14 8 308 63 363 4.90e-46 160
MS.gene024000.t1 MTR_4g023200 38.312 308 159 10 9 309 71 354 8.66e-46 159
MS.gene024000.t1 MTR_4g023150 38.312 308 159 11 9 309 71 354 2.19e-45 157
MS.gene024000.t1 MTR_4g117870 38.535 314 133 15 9 315 7 267 5.05e-45 154
MS.gene024000.t1 MTR_4g023120 37.160 331 159 15 8 314 63 368 9.92e-44 154
MS.gene024000.t1 MTR_4g023090 37.037 324 169 12 9 314 77 383 1.20e-43 154
MS.gene024000.t1 MTR_4g023190 37.987 308 159 10 9 309 71 353 1.40e-43 153
MS.gene024000.t1 MTR_4g023440 36.364 319 141 11 1 315 72 332 1.92e-43 152
MS.gene024000.t1 MTR_4g118400 35.216 301 148 9 14 309 36 294 3.32e-43 150
MS.gene024000.t1 MTR_4g023380 36.036 333 153 13 9 314 77 376 3.82e-41 147
MS.gene024000.t1 MTR_7g079450 59.589 146 46 6 173 315 2 137 1.97e-40 138
MS.gene024000.t1 MTR_1g055175 40.594 202 109 6 118 315 7 201 5.13e-40 139
MS.gene024000.t1 MTR_6g463430 43.939 198 98 7 120 315 16 202 5.81e-40 139
MS.gene024000.t1 MTR_4g116320 43.119 218 111 8 96 310 46 253 2.55e-38 136
MS.gene024000.t1 MTR_4g118370 39.526 253 123 8 58 310 33 255 1.38e-37 134
MS.gene024000.t1 MTR_8g433030 40.625 224 116 8 92 311 128 338 2.14e-36 134
MS.gene024000.t1 MTR_5g069120 56.250 128 48 3 9 129 52 178 1.48e-35 127
MS.gene024000.t1 MTR_1g055165 31.579 304 138 10 14 315 83 318 1.58e-35 130
MS.gene024000.t1 MTR_4g116330 34.056 323 149 12 1 315 75 341 4.71e-34 127
MS.gene024000.t1 MTR_4g121580 37.050 278 134 11 9 279 75 318 3.48e-32 123
MS.gene024000.t1 MTR_8g013010 41.463 205 103 8 12 213 118 308 6.04e-32 121
MS.gene024000.t1 MTR_1g055250 36.207 232 134 9 62 288 22 244 1.11e-30 118
MS.gene024000.t1 MTR_4g117530 32.423 293 132 12 30 315 20 253 9.81e-28 108
MS.gene024000.t1 MTR_8g040935 38.073 218 110 11 112 315 2 208 1.22e-27 107
MS.gene024000.t1 MTR_4g117430 40.000 170 79 7 46 213 3 151 3.86e-26 101
MS.gene024000.t1 MTR_4g116340 35.484 186 100 6 2 178 73 247 3.12e-25 102
MS.gene024000.t1 MTR_4g114700 32.319 263 123 7 46 306 9 218 2.31e-23 96.7
MS.gene024000.t1 MTR_4g118360 47.619 105 53 2 205 309 18 120 1.21e-22 91.7
MS.gene024000.t1 MTR_5g023000 51.515 99 40 4 220 315 6 99 1.72e-21 87.4
MS.gene024000.t1 MTR_7g117720 41.096 146 72 6 8 146 51 189 1.07e-20 90.1
MS.gene024000.t1 MTR_7g117720 54.023 87 38 1 226 310 186 272 5.28e-20 88.2
MS.gene024000.t1 MTR_4g133170 25.095 263 151 13 29 262 68 313 2.58e-16 79.3
MS.gene024000.t1 MTR_6g021880 25.991 227 148 7 38 255 116 331 2.71e-15 76.3
MS.gene024000.t1 MTR_4g108820 28.986 207 127 6 36 242 102 288 2.86e-15 75.5
MS.gene024000.t1 MTR_5g022040 26.050 238 128 11 29 239 170 386 3.89e-15 76.3
MS.gene024000.t1 MTR_7g009265 27.823 248 131 12 40 257 30 259 1.61e-14 73.6
MS.gene024000.t1 MTR_2g021050 27.491 291 160 16 2 262 41 310 1.74e-13 70.9
MS.gene024000.t1 MTR_6g034720 42.268 97 51 2 86 182 71 162 4.70e-13 67.8
MS.gene024000.t1 MTR_4g107820 27.652 264 154 12 1 252 89 327 7.97e-13 68.9
MS.gene024000.t1 MTR_4g107780 27.652 264 154 12 1 252 89 327 7.97e-13 68.9
MS.gene024000.t1 MTR_4g107820 27.652 264 154 12 1 252 89 327 8.39e-13 68.9
MS.gene024000.t1 MTR_4g107780 27.652 264 154 12 1 252 89 327 9.37e-13 68.6
MS.gene024000.t1 MTR_7g070830 24.645 211 138 5 57 248 147 355 1.19e-12 68.6
MS.gene024000.t1 MTR_2g028160 25.100 251 152 11 42 266 105 345 1.87e-12 67.8
MS.gene024000.t1 MTR_5g022420 26.961 204 120 10 41 240 120 298 3.16e-12 67.0
MS.gene024000.t1 MTR_2g426020 24.679 312 173 16 41 315 98 384 3.18e-12 67.0
MS.gene024000.t1 MTR_3g006670 29.384 211 114 11 41 238 144 332 4.89e-12 66.6
MS.gene024000.t1 MTR_2g055970 29.730 222 116 11 41 247 305 501 5.54e-12 66.6
MS.gene024000.t1 MTR_4g061340 26.606 218 129 9 40 243 116 316 7.73e-12 65.9
MS.gene024000.t1 MTR_0667s0010 23.396 265 164 12 32 268 83 336 1.57e-11 65.1
MS.gene024000.t1 MTR_5g057790 26.794 209 118 10 42 238 141 326 2.62e-11 64.3
MS.gene024000.t1 MTR_2g021150 25.735 272 155 14 5 262 90 328 3.46e-11 63.9
MS.gene024000.t1 MTR_5g022045 22.619 252 165 9 8 239 104 345 4.28e-11 63.9
MS.gene024000.t1 MTR_1g068835 24.771 218 137 10 41 244 89 293 5.23e-11 63.2
MS.gene024000.t1 MTR_6g017305 25.234 214 132 8 59 257 17 217 6.36e-11 62.4
MS.gene024000.t1 MTR_0064s0160 25.000 324 200 11 18 315 120 426 8.04e-11 62.8
MS.gene024000.t1 MTR_7g070440 24.046 262 161 12 36 271 90 339 9.51e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024000.t1 AT4G12560 27.888 251 144 13 29 251 72 313 1.70e-13 70.9
MS.gene024000.t1 AT4G12560 27.888 251 144 13 29 251 72 313 1.70e-13 70.9
MS.gene024000.t1 AT4G12560 27.888 251 144 13 29 251 72 313 1.70e-13 70.9
MS.gene024000.t1 AT3G06240 25.229 218 133 11 35 241 159 357 3.02e-11 64.3

Find 72 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATTGCCTTTGATTTAA+AGG 0.116438 7.1:+24614465 MS.gene024000:CDS
CGTTCTCATCCTGAAATTAT+AGG 0.189974 7.1:+24614049 MS.gene024000:CDS
CCACAATTTGTAAAGGATAT+TGG 0.201297 7.1:-24614697 None:intergenic
CACAATTTGTAAAGGATATT+GGG 0.212064 7.1:-24614696 None:intergenic
CTGAGGATTACTTGGTAGTT+TGG 0.237966 7.1:+24614230 MS.gene024000:CDS
TGGTTCTCATTTGCCTTATA+TGG 0.248940 7.1:+24614348 MS.gene024000:CDS
CCTTTGCCGGCAATAGTTAT+AGG 0.270304 7.1:-24614163 None:intergenic
TGAGGATTACTTGGTAGTTT+GGG 0.277638 7.1:+24614231 MS.gene024000:CDS
TCTTGAATGGTTCTATTCAT+TGG 0.326345 7.1:+24614410 MS.gene024000:CDS
CTTGAGAATATAACCTTTGC+CGG 0.326841 7.1:-24614176 None:intergenic
AAATCAATGGATAGGGCTTC+AGG 0.333870 7.1:-24613965 None:intergenic
TTTCTATTAGTAACCATATA+AGG 0.347839 7.1:-24614361 None:intergenic
TTCTCGAGATTATGATTTGT+TGG 0.363932 7.1:+24614540 MS.gene024000:CDS
CTACACGAACCTATAATTTC+AGG 0.379354 7.1:-24614058 None:intergenic
GAATGGTTCTATTCATTGGC+TGG 0.382596 7.1:+24614414 MS.gene024000:CDS
CCGTCTCCTATAACTATTGC+CGG 0.390118 7.1:+24614157 MS.gene024000:CDS
ACAAATTGTGGTGATATAGT+TGG 0.398543 7.1:+24614709 MS.gene024000:CDS
CCAATATCCTTTACAAATTG+TGG 0.408775 7.1:+24614697 MS.gene024000:CDS
TGTGAACTTCGATGAAGTTA+AGG 0.436159 7.1:+24614591 MS.gene024000:CDS
GAGCGATGCATTAAAATCAA+TGG 0.443745 7.1:-24613978 None:intergenic
GTTGCAAATGCCTCTACCTA+TGG 0.446864 7.1:+24614101 MS.gene024000:CDS
GGTGATATAGTTGGAGTAGA+TGG 0.451551 7.1:+24614718 MS.gene024000:CDS
ATTATGCAGTGGGTTCATCT+TGG 0.455331 7.1:+24614629 MS.gene024000:CDS
AGTTAAGGTATGGGTGATGC+AGG 0.455781 7.1:+24614606 MS.gene024000:CDS
TCTCATTGAGAGCTAATAAG+TGG 0.462649 7.1:+24614311 MS.gene024000:CDS
TCTCATTTCCTTTAAATCAA+AGG 0.470272 7.1:-24614473 None:intergenic
GGAGTCGGATATTTCTTGAA+TGG 0.475353 7.1:+24614397 MS.gene024000:CDS
ACCCTCAACTGAGGATTACT+TGG 0.492115 7.1:+24614222 MS.gene024000:CDS
AATAGAAATCACTTAGGTGC+TGG 0.492971 7.1:+24614376 MS.gene024000:CDS
TATGATTTGTTGGTATTTCG+CGG 0.493165 7.1:+24614550 MS.gene024000:CDS
ATGCATTAAAATCAATGGAT+AGG 0.496899 7.1:-24613973 None:intergenic
TGCATTAAAATCAATGGATA+GGG 0.499459 7.1:-24613972 None:intergenic
ACTTCGATGAAGTTAAGGTA+TGG 0.506053 7.1:+24614596 MS.gene024000:CDS
AAATTATAGGTTCGTGTAGA+GGG 0.514888 7.1:+24614062 MS.gene024000:CDS
TTATGAAGGTCGATTGATGA+AGG 0.520086 7.1:+24614741 MS.gene024000:CDS
TGTCGTTATTTGATGAAGAA+CGG 0.520601 7.1:-24614810 None:intergenic
ACCAAGTAATCCTCAGTTGA+GGG 0.524409 7.1:-24614223 None:intergenic
ATCTCAATCGAAATAGATAC+CGG 0.527336 7.1:-24614286 None:intergenic
TAAGCTTGATCAACACCACT+AGG 0.546948 7.1:-24614868 None:intergenic
GAAATTATAGGTTCGTGTAG+AGG 0.549130 7.1:+24614061 MS.gene024000:CDS
TATATCACCACAATTTGTAA+AGG 0.551865 7.1:-24614704 None:intergenic
CTTCGATGAAGTTAAGGTAT+GGG 0.555839 7.1:+24614597 MS.gene024000:CDS
GTTGGAGTAGATGGTTATGA+AGG 0.565206 7.1:+24614727 MS.gene024000:CDS
ACAATTTGTAAAGGATATTG+GGG 0.566127 7.1:-24614695 None:intergenic
AAGTGGAAACAAGTTGAGGT+TGG 0.569153 7.1:+24614328 MS.gene024000:CDS
CCTATAACTATTGCCGGCAA+AGG 0.570684 7.1:+24614163 MS.gene024000:CDS
TACCTATGGAATCCATCCAC+TGG 0.573050 7.1:+24614115 MS.gene024000:CDS
ACTATAACCATCATCTTCGT+AGG 0.574773 7.1:-24614257 None:intergenic
GAGGATTACTTGGTAGTTTG+GGG 0.580544 7.1:+24614232 MS.gene024000:CDS
TGGATGGATTCCATAGGTAG+AGG 0.582971 7.1:-24614111 None:intergenic
TACCAAGTAATCCTCAGTTG+AGG 0.591405 7.1:-24614224 None:intergenic
CCGGCAATAGTTATAGGAGA+CGG 0.600720 7.1:-24614157 None:intergenic
TGATGGTTATAGTTATGAGC+CGG 0.601481 7.1:+24614267 MS.gene024000:CDS
GTTACTAATAGAAATCACTT+AGG 0.605380 7.1:+24614370 MS.gene024000:CDS
AGTTGAGGGTTCGTATGTCA+AGG 0.608505 7.1:-24614209 None:intergenic
TTGATCAACACCACTAGGGA+GGG 0.614445 7.1:-24614863 None:intergenic
TTGATGAAGGTTAATGACAA+AGG 0.617719 7.1:+24614754 MS.gene024000:CDS
AAGCTTGATCAACACCACTA+GGG 0.622953 7.1:-24614867 None:intergenic
TGTTTGTTGACACCAGTGGA+TGG 0.624812 7.1:-24614127 None:intergenic
CTTGATCAACACCACTAGGG+AGG 0.626589 7.1:-24614864 None:intergenic
TATTTGTTTGTTGACACCAG+TGG 0.635309 7.1:-24614131 None:intergenic
TCTCTGCTTTCCCTCCCTAG+TGG 0.638502 7.1:+24614853 MS.gene024000:CDS
AGGATTACTTGGTAGTTTGG+GGG 0.639494 7.1:+24614233 MS.gene024000:CDS
TAATAAGTGGAAACAAGTTG+AGG 0.642343 7.1:+24614324 MS.gene024000:CDS
AATCACTTAGGTGCTGGAGT+CGG 0.649332 7.1:+24614382 MS.gene024000:CDS
CTATAATTTCAGGATGAGAA+CGG 0.654218 7.1:-24614048 None:intergenic
CACCAGTGGATGGATTCCAT+AGG 0.657114 7.1:-24614117 None:intergenic
GTGATGCAGGATTATGCAGT+GGG 0.663284 7.1:+24614619 MS.gene024000:CDS
GACATACGAACCCTCAACTG+AGG 0.668053 7.1:+24614213 MS.gene024000:CDS
GGTGATGCAGGATTATGCAG+TGG 0.702426 7.1:+24614618 MS.gene024000:CDS
ATTTCAGGATGAGAACGGTG+AGG 0.730403 7.1:-24614043 None:intergenic
TCATAATTATGAGACTGACA+AGG 0.730623 7.1:+24614438 MS.gene024000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATGATAAAAAATATC+TGG - chr7.1:24614517-24614536 None:intergenic 10.0%
!! TTTCTATTAGTAACCATATA+AGG - chr7.1:24614364-24614383 None:intergenic 20.0%
!!! TATTATTGCCTTTGATTTAA+AGG + chr7.1:24614465-24614484 MS.gene024000:CDS 20.0%
! ACAATTTGTAAAGGATATTG+GGG - chr7.1:24614698-24614717 None:intergenic 25.0%
! ATGCATTAAAATCAATGGAT+AGG - chr7.1:24613976-24613995 None:intergenic 25.0%
! CACAATTTGTAAAGGATATT+GGG - chr7.1:24614699-24614718 None:intergenic 25.0%
! GTTACTAATAGAAATCACTT+AGG + chr7.1:24614370-24614389 MS.gene024000:CDS 25.0%
! TATATCACCACAATTTGTAA+AGG - chr7.1:24614707-24614726 None:intergenic 25.0%
! TCTCATTTCCTTTAAATCAA+AGG - chr7.1:24614476-24614495 None:intergenic 25.0%
! TGCATTAAAATCAATGGATA+GGG - chr7.1:24613975-24613994 None:intergenic 25.0%
!! TTTTTCTAAGCATTCTATTG+AGG + chr7.1:24614666-24614685 MS.gene024000:CDS 25.0%
AAATTATAGGTTCGTGTAGA+GGG + chr7.1:24614062-24614081 MS.gene024000:CDS 30.0%
ACAAATTGTGGTGATATAGT+TGG + chr7.1:24614709-24614728 MS.gene024000:CDS 30.0%
ATCTCAATCGAAATAGATAC+CGG - chr7.1:24614289-24614308 None:intergenic 30.0%
CCAATATCCTTTACAAATTG+TGG + chr7.1:24614697-24614716 MS.gene024000:CDS 30.0%
CCACAATTTGTAAAGGATAT+TGG - chr7.1:24614700-24614719 None:intergenic 30.0%
CTATAATTTCAGGATGAGAA+CGG - chr7.1:24614051-24614070 None:intergenic 30.0%
TAATAAGTGGAAACAAGTTG+AGG + chr7.1:24614324-24614343 MS.gene024000:CDS 30.0%
TCATAATTATGAGACTGACA+AGG + chr7.1:24614438-24614457 MS.gene024000:CDS 30.0%
TGTCGTTATTTGATGAAGAA+CGG - chr7.1:24614813-24614832 None:intergenic 30.0%
TTGATGAAGGTTAATGACAA+AGG + chr7.1:24614754-24614773 MS.gene024000:CDS 30.0%
! TCTTGAATGGTTCTATTCAT+TGG + chr7.1:24614410-24614429 MS.gene024000:CDS 30.0%
! TTCTCGAGATTATGATTTGT+TGG + chr7.1:24614540-24614559 MS.gene024000:CDS 30.0%
!! TATGATTTGTTGGTATTTCG+CGG + chr7.1:24614550-24614569 MS.gene024000:CDS 30.0%
AATAGAAATCACTTAGGTGC+TGG + chr7.1:24614376-24614395 MS.gene024000:CDS 35.0%
ACTATAACCATCATCTTCGT+AGG - chr7.1:24614260-24614279 None:intergenic 35.0%
ACTTCGATGAAGTTAAGGTA+TGG + chr7.1:24614596-24614615 MS.gene024000:CDS 35.0%
CGTTCTCATCCTGAAATTAT+AGG + chr7.1:24614049-24614068 MS.gene024000:CDS 35.0%
CTACACGAACCTATAATTTC+AGG - chr7.1:24614061-24614080 None:intergenic 35.0%
CTTCGATGAAGTTAAGGTAT+GGG + chr7.1:24614597-24614616 MS.gene024000:CDS 35.0%
CTTGAGAATATAACCTTTGC+CGG - chr7.1:24614179-24614198 None:intergenic 35.0%
GAAATTATAGGTTCGTGTAG+AGG + chr7.1:24614061-24614080 MS.gene024000:CDS 35.0%
GAGCGATGCATTAAAATCAA+TGG - chr7.1:24613981-24614000 None:intergenic 35.0%
TCTCATTGAGAGCTAATAAG+TGG + chr7.1:24614311-24614330 MS.gene024000:CDS 35.0%
TGATGGTTATAGTTATGAGC+CGG + chr7.1:24614267-24614286 MS.gene024000:CDS 35.0%
TGGTTCTCATTTGCCTTATA+TGG + chr7.1:24614348-24614367 MS.gene024000:CDS 35.0%
TGTGAACTTCGATGAAGTTA+AGG + chr7.1:24614591-24614610 MS.gene024000:CDS 35.0%
TTATGAAGGTCGATTGATGA+AGG + chr7.1:24614741-24614760 MS.gene024000:CDS 35.0%
! TATTTGTTTGTTGACACCAG+TGG - chr7.1:24614134-24614153 None:intergenic 35.0%
! TGAGGATTACTTGGTAGTTT+GGG + chr7.1:24614231-24614250 MS.gene024000:CDS 35.0%
AAATCAATGGATAGGGCTTC+AGG - chr7.1:24613968-24613987 None:intergenic 40.0%
AACGGTGAGGCAAAAAATCA+AGG - chr7.1:24614033-24614052 None:intergenic 40.0%
AAGCTTGATCAACACCACTA+GGG - chr7.1:24614870-24614889 None:intergenic 40.0%
ACCAAGTAATCCTCAGTTGA+GGG - chr7.1:24614226-24614245 None:intergenic 40.0%
GGAGTCGGATATTTCTTGAA+TGG + chr7.1:24614397-24614416 MS.gene024000:CDS 40.0%
GGTGATATAGTTGGAGTAGA+TGG + chr7.1:24614718-24614737 MS.gene024000:CDS 40.0%
GTTGGAGTAGATGGTTATGA+AGG + chr7.1:24614727-24614746 MS.gene024000:CDS 40.0%
TAAGCTTGATCAACACCACT+AGG - chr7.1:24614871-24614890 None:intergenic 40.0%
TACCAAGTAATCCTCAGTTG+AGG - chr7.1:24614227-24614246 None:intergenic 40.0%
TGAGGCAAAAAATCAAGGCT+TGG - chr7.1:24614028-24614047 None:intergenic 40.0%
! AAGTGGAAACAAGTTGAGGT+TGG + chr7.1:24614328-24614347 MS.gene024000:CDS 40.0%
! AGGATTACTTGGTAGTTTGG+GGG + chr7.1:24614233-24614252 MS.gene024000:CDS 40.0%
! ATTATGCAGTGGGTTCATCT+TGG + chr7.1:24614629-24614648 MS.gene024000:CDS 40.0%
! CTGAGGATTACTTGGTAGTT+TGG + chr7.1:24614230-24614249 MS.gene024000:CDS 40.0%
! GAATGGTTCTATTCATTGGC+TGG + chr7.1:24614414-24614433 MS.gene024000:CDS 40.0%
! GAGGATTACTTGGTAGTTTG+GGG + chr7.1:24614232-24614251 MS.gene024000:CDS 40.0%
ACCCTCAACTGAGGATTACT+TGG + chr7.1:24614222-24614241 MS.gene024000:CDS 45.0%
AGTTAAGGTATGGGTGATGC+AGG + chr7.1:24614606-24614625 MS.gene024000:CDS 45.0%
AGTTGAGGGTTCGTATGTCA+AGG - chr7.1:24614212-24614231 None:intergenic 45.0%
ATTTCAGGATGAGAACGGTG+AGG - chr7.1:24614046-24614065 None:intergenic 45.0%
CCGGCAATAGTTATAGGAGA+CGG - chr7.1:24614160-24614179 None:intergenic 45.0%
CCGTCTCCTATAACTATTGC+CGG + chr7.1:24614157-24614176 MS.gene024000:CDS 45.0%
CCTATAACTATTGCCGGCAA+AGG + chr7.1:24614163-24614182 MS.gene024000:CDS 45.0%
CCTTTGCCGGCAATAGTTAT+AGG - chr7.1:24614166-24614185 None:intergenic 45.0%
GTGATGCAGGATTATGCAGT+GGG + chr7.1:24614619-24614638 MS.gene024000:CDS 45.0%
GTTGCAAATGCCTCTACCTA+TGG + chr7.1:24614101-24614120 MS.gene024000:CDS 45.0%
TACCTATGGAATCCATCCAC+TGG + chr7.1:24614115-24614134 MS.gene024000:CDS 45.0%
TTGATCAACACCACTAGGGA+GGG - chr7.1:24614866-24614885 None:intergenic 45.0%
! TGGATGGATTCCATAGGTAG+AGG - chr7.1:24614114-24614133 None:intergenic 45.0%
! TGTTTGTTGACACCAGTGGA+TGG - chr7.1:24614130-24614149 None:intergenic 45.0%
!! AATCACTTAGGTGCTGGAGT+CGG + chr7.1:24614382-24614401 MS.gene024000:CDS 45.0%
CTTGATCAACACCACTAGGG+AGG - chr7.1:24614867-24614886 None:intergenic 50.0%
GACATACGAACCCTCAACTG+AGG + chr7.1:24614213-24614232 MS.gene024000:CDS 50.0%
GGTGATGCAGGATTATGCAG+TGG + chr7.1:24614618-24614637 MS.gene024000:CDS 50.0%
! CACCAGTGGATGGATTCCAT+AGG - chr7.1:24614120-24614139 None:intergenic 50.0%
TCTCTGCTTTCCCTCCCTAG+TGG + chr7.1:24614853-24614872 MS.gene024000:CDS 55.0%
TGGGGGACCTACGAAGATGA+TGG + chr7.1:24614250-24614269 MS.gene024000:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 24613944 24614891 24613944 ID=MS.gene024000
chr7.1 mRNA 24613944 24614891 24613944 ID=MS.gene024000.t1;Parent=MS.gene024000
chr7.1 exon 24613944 24614891 24613944 ID=MS.gene024000.t1.exon1;Parent=MS.gene024000.t1
chr7.1 CDS 24613944 24614891 24613944 ID=cds.MS.gene024000.t1;Parent=MS.gene024000.t1
Gene Sequence

>MS.gene024000

ATGTTCATAGATTTTCATGTTCCTGAAGCCCTATCCATTGATTTTAATGCATCGCTCAAAGATGATTCTGCTTATCATTCACCAAGCCTTGATTTTTTGCCTCACCGTTCTCATCCTGAAATTATAGGTTCGTGTAGAGGGTTTCTATTATTGCAATGTTGCAAATGCCTCTACCTATGGAATCCATCCACTGGTGTCAACAAACAAATACATCCGTCTCCTATAACTATTGCCGGCAAAGGTTATATTCTCAAGTTTCTGTATGCCTTGACATACGAACCCTCAACTGAGGATTACTTGGTAGTTTGGGGGACCTACGAAGATGATGGTTATAGTTATGAGCCGGTATCTATTTCGATTGAGATTTTCTCATTGAGAGCTAATAAGTGGAAACAAGTTGAGGTTGGTTCTCATTTGCCTTATATGGTTACTAATAGAAATCACTTAGGTGCTGGAGTCGGATATTTCTTGAATGGTTCTATTCATTGGCTGGTTCATAATTATGAGACTGACAAGGATGTTATTATTGCCTTTGATTTAAAGGAAATGAGAATCTCTGAGATAGCTCTGCCAGATATTTTTTATCATTATTACTGTTCTCGAGATTATGATTTGTTGGTATTTCGCGGACTTATCAGTGCATGTATTGTGAACTTCGATGAAGTTAAGGTATGGGTGATGCAGGATTATGCAGTGGGTTCATCTTGGACTCAGACTCTTGTTTTTTCTAAGCATTCTATTGAGGACTTTTCCCCAATATCCTTTACAAATTGTGGTGATATAGTTGGAGTAGATGGTTATGAAGGTCGATTGATGAAGGTTAATGACAAAGGACAGCTTCTAGAGCGTCGCTTCTATCATCGTTTCCGTTCTTCATCAAATAACGACAAAATGACTTTGTATACAGAGTCTCTGCTTTCCCTCCCTAGTGGTGTTGATCAAGCTTAA
Protein sequence

>MS.gene024000.t1

MFIDFHVPEALSIDFNASLKDDSAYHSPSLDFLPHRSHPEIIGSCRGFLLLQCCKCLYLWNPSTGVNKQIHPSPITIAGKGYILKFLYALTYEPSTEDYLVVWGTYEDDGYSYEPVSISIEIFSLRANKWKQVEVGSHLPYMVTNRNHLGAGVGYFLNGSIHWLVHNYETDKDVIIAFDLKEMRISEIALPDIFYHYYCSRDYDLLVFRGLISACIVNFDEVKVWVMQDYAVGSSWTQTLVFSKHSIEDFSPISFTNCGDIVGVDGYEGRLMKVNDKGQLLERRFYHRFRSSSNNDKMTLYTESLLSLPSGVDQA