AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058696

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058696.t1 MTR_7g079420 62.143 280 60 5 34 307 905 1144 6.84e-103 325
MS.gene058696.t1 MTR_7g079370 58.719 281 103 7 33 307 83 356 5.83e-96 288
MS.gene058696.t1 MTR_2g048580 52.878 278 90 7 33 307 103 342 1.53e-83 255
MS.gene058696.t1 MTR_7g079400 52.740 292 104 10 29 307 67 337 3.40e-83 254
MS.gene058696.t1 MTR_8g102520 46.608 339 132 9 1 307 1 322 5.60e-81 248
MS.gene058696.t1 MTR_4g117720 41.714 350 137 12 1 303 44 373 1.27e-67 216
MS.gene058696.t1 MTR_6g060650 46.953 279 126 8 32 306 112 372 4.13e-64 206
MS.gene058696.t1 MTR_5g097210 44.000 275 128 6 33 302 105 358 9.29e-59 192
MS.gene058696.t1 MTR_4g023130 37.982 337 141 12 1 300 1 306 5.36e-56 184
MS.gene058696.t1 MTR_4g118380 46.667 255 112 9 32 275 114 355 3.93e-54 180
MS.gene058696.t1 MTR_4g109280 44.444 279 132 9 33 307 100 359 2.23e-53 178
MS.gene058696.t1 MTR_5g070088 39.519 291 149 9 21 303 110 381 9.86e-53 177
MS.gene058696.t1 MTR_1g055135 41.837 294 144 11 23 307 100 375 2.34e-52 176
MS.gene058696.t1 MTR_4g116330 42.553 282 132 11 33 307 122 380 4.69e-52 176
MS.gene058696.t1 MTR_3g034180 39.116 294 135 9 33 307 221 489 8.81e-52 177
MS.gene058696.t1 MTR_3g034130 39.493 276 141 7 12 279 94 351 1.62e-51 174
MS.gene058696.t1 MTR_8g098830 56.471 170 64 5 111 275 32 196 4.51e-51 168
MS.gene058696.t1 MTR_8g032390 36.338 355 154 11 3 303 35 371 1.18e-50 172
MS.gene058696.t1 MTR_4g118400 38.123 341 124 13 1 301 1 294 2.37e-50 169
MS.gene058696.t1 MTR_5g070080 39.590 293 152 10 21 307 113 386 2.83e-50 171
MS.gene058696.t1 MTR_3g103020 40.909 286 135 12 33 307 116 378 6.38e-50 170
MS.gene058696.t1 MTR_4g094365 41.281 281 139 9 33 307 104 364 4.60e-49 167
MS.gene058696.t1 MTR_4g117850 41.696 283 126 12 32 300 116 373 1.38e-48 166
MS.gene058696.t1 MTR_4g109270 40.767 287 131 10 33 307 105 364 5.28e-48 164
MS.gene058696.t1 MTR_8g433040 38.710 279 141 7 33 307 112 364 1.06e-47 164
MS.gene058696.t1 MTR_8g032380 38.710 279 141 7 33 307 112 364 1.06e-47 164
MS.gene058696.t1 MTR_8g433030 39.062 320 160 14 3 303 35 338 2.39e-47 162
MS.gene058696.t1 MTR_4g117770 40.000 280 145 8 33 307 106 367 2.47e-47 163
MS.gene058696.t1 MTR_4g117810 40.000 280 145 8 33 307 106 367 2.47e-47 163
MS.gene058696.t1 MTR_1g055195 39.583 288 128 11 33 307 224 478 4.19e-47 165
MS.gene058696.t1 MTR_4g023080 39.416 274 129 10 33 300 105 347 4.35e-47 162
MS.gene058696.t1 MTR_3g034160 37.584 298 164 6 17 306 91 374 1.97e-46 160
MS.gene058696.t1 MTR_4g122850 40.845 284 141 13 33 307 99 364 5.57e-46 159
MS.gene058696.t1 MTR_7g079450 60.274 146 42 6 167 307 3 137 7.25e-45 149
MS.gene058696.t1 MTR_4g117780 37.857 280 151 8 33 307 106 367 6.55e-44 154
MS.gene058696.t1 MTR_4g023070 36.644 292 145 10 33 306 99 368 8.74e-44 154
MS.gene058696.t1 MTR_4g023120 36.644 292 145 10 33 306 99 368 1.84e-43 152
MS.gene058696.t1 MTR_4g023090 36.986 292 145 10 33 306 113 383 4.66e-43 152
MS.gene058696.t1 MTR_1g055175 44.221 199 102 6 113 307 8 201 1.27e-42 145
MS.gene058696.t1 MTR_4g118370 39.615 260 120 7 47 304 33 257 2.14e-42 147
MS.gene058696.t1 MTR_4g021785 37.591 274 135 10 33 300 105 348 2.52e-42 149
MS.gene058696.t1 MTR_4g117750 38.869 283 140 9 32 302 93 354 3.64e-42 152
MS.gene058696.t1 MTR_4g117750 39.286 140 70 5 177 305 346 481 1.41e-13 71.2
MS.gene058696.t1 MTR_5g070130 37.671 292 134 12 33 303 108 372 5.65e-42 149
MS.gene058696.t1 MTR_4g117530 35.738 305 119 10 7 307 22 253 1.09e-41 145
MS.gene058696.t1 MTR_4g023200 35.831 307 161 11 7 305 80 358 7.30e-41 145
MS.gene058696.t1 MTR_4g023150 35.621 306 163 10 7 305 80 358 1.21e-40 145
MS.gene058696.t1 MTR_4g023190 36.808 307 157 12 7 305 80 357 2.77e-40 144
MS.gene058696.t1 MTR_4g117870 37.234 282 120 11 29 307 40 267 4.26e-39 139
MS.gene058696.t1 MTR_4g023380 34.219 301 134 9 33 306 113 376 8.99e-39 140
MS.gene058696.t1 MTR_4g116330 38.710 279 108 11 33 307 122 341 1.00e-38 139
MS.gene058696.t1 MTR_4g023440 37.276 279 109 12 33 307 116 332 9.76e-37 134
MS.gene058696.t1 MTR_4g116320 41.364 220 111 9 89 302 46 253 2.49e-35 128
MS.gene058696.t1 MTR_6g463430 44.500 200 94 10 113 307 15 202 1.57e-34 125
MS.gene058696.t1 MTR_1g055165 45.963 161 79 5 150 307 163 318 7.00e-34 126
MS.gene058696.t1 MTR_1g055250 42.180 211 101 9 76 279 46 242 4.25e-33 124
MS.gene058696.t1 MTR_8g040935 37.313 201 113 7 114 307 14 208 4.61e-28 108
MS.gene058696.t1 MTR_4g114700 34.701 268 113 7 35 298 9 218 1.00e-27 108
MS.gene058696.t1 MTR_4g121580 36.653 251 112 12 33 276 113 323 4.43e-27 109
MS.gene058696.t1 MTR_4g117430 43.972 141 58 5 47 187 15 134 8.90e-27 103
MS.gene058696.t1 MTR_8g013010 42.045 176 84 7 33 208 152 309 2.77e-26 105
MS.gene058696.t1 MTR_4g116340 43.243 148 70 5 27 171 111 247 2.61e-24 99.4
MS.gene058696.t1 MTR_4g133170 32.701 211 119 11 29 230 87 283 1.14e-23 100
MS.gene058696.t1 MTR_5g069120 55.435 92 40 1 33 123 87 178 4.32e-23 94.0
MS.gene058696.t1 MTR_4g118360 41.600 125 64 4 181 301 1 120 5.01e-21 87.0
MS.gene058696.t1 MTR_4g122860 28.793 323 152 13 1 307 60 320 7.09e-20 89.0
MS.gene058696.t1 MTR_5g023000 46.875 96 45 2 215 307 7 99 1.39e-19 82.4
MS.gene058696.t1 MTR_7g117720 47.619 105 47 3 33 137 90 186 5.67e-19 85.1
MS.gene058696.t1 MTR_7g117720 47.727 88 40 3 220 302 186 272 3.50e-14 71.6
MS.gene058696.t1 MTR_1g068875 28.846 208 123 7 33 230 92 284 2.40e-17 82.0
MS.gene058696.t1 MTR_2g021155 28.384 229 139 10 8 230 671 880 2.68e-17 82.8
MS.gene058696.t1 MTR_6g034720 44.628 121 57 5 58 177 53 164 3.08e-17 79.3
MS.gene058696.t1 MTR_0667s0010 27.083 192 120 7 48 230 120 300 8.58e-17 80.5
MS.gene058696.t1 MTR_1g068835 26.009 223 143 9 31 245 90 298 1.09e-16 80.1
MS.gene058696.t1 MTR_4g108820 27.660 282 125 10 7 240 41 291 4.39e-16 77.8
MS.gene058696.t1 MTR_8g054320 28.017 232 128 9 8 231 32 232 1.13e-15 76.3
MS.gene058696.t1 MTR_2g025960 28.125 192 116 9 48 230 31 209 2.83e-15 75.5
MS.gene058696.t1 MTR_3g007410 29.048 210 120 13 31 231 144 333 3.61e-15 75.9
MS.gene058696.t1 MTR_4g055060 29.004 231 137 10 10 231 104 316 4.19e-15 75.5
MS.gene058696.t1 MTR_2g024110 23.695 249 159 9 33 265 94 327 8.12e-15 74.7
MS.gene058696.t1 MTR_3g010870 28.079 203 118 8 32 231 133 310 1.22e-14 73.9
MS.gene058696.t1 MTR_3g007360 29.048 210 120 13 31 231 144 333 1.52e-14 73.9
MS.gene058696.t1 MTR_3g009240 28.571 189 115 6 43 231 143 311 1.99e-14 73.6
MS.gene058696.t1 MTR_2g426060 27.523 218 127 12 33 230 100 306 4.39e-14 72.4
MS.gene058696.t1 MTR_5g097680 26.690 281 176 11 41 300 152 423 6.54e-14 72.0
MS.gene058696.t1 MTR_2g031640 25.728 206 136 8 33 230 93 289 6.71e-14 72.0
MS.gene058696.t1 MTR_4g107820 30.667 225 118 11 31 246 131 326 1.98e-13 70.5
MS.gene058696.t1 MTR_4g107780 30.667 225 118 11 31 246 131 326 1.98e-13 70.5
MS.gene058696.t1 MTR_4g107820 30.667 225 118 11 31 246 131 326 2.11e-13 70.5
MS.gene058696.t1 MTR_4g107780 30.667 225 118 11 31 246 131 326 2.13e-13 70.5
MS.gene058696.t1 MTR_2g078870 26.126 222 128 10 31 247 56 246 3.21e-13 69.3
MS.gene058696.t1 MTR_6g021880 27.106 273 171 13 14 274 102 358 4.00e-13 69.7
MS.gene058696.t1 MTR_3g024150 23.415 205 125 5 30 231 136 311 4.63e-13 69.3
MS.gene058696.t1 MTR_3g007430 26.794 209 127 8 31 231 133 323 5.63e-13 69.3
MS.gene058696.t1 MTR_2g426070 27.895 190 117 8 48 230 131 307 6.02e-13 69.3
MS.gene058696.t1 MTR_6g090180 26.866 201 125 6 48 231 173 368 9.19e-13 68.6
MS.gene058696.t1 MTR_4g070550 27.179 195 118 11 48 230 127 309 1.08e-12 68.6
MS.gene058696.t1 MTR_3g009310 26.493 268 144 13 48 299 160 390 1.38e-12 68.2
MS.gene058696.t1 MTR_3g014540 28.293 205 123 9 33 231 124 310 1.63e-12 67.8
MS.gene058696.t1 MTR_3g007330 26.341 205 125 8 33 231 138 322 2.32e-12 67.4
MS.gene058696.t1 MTR_3g083640 23.881 201 125 6 32 231 156 329 2.74e-12 67.0
MS.gene058696.t1 MTR_0044s0300 26.214 206 120 9 31 231 136 314 3.49e-12 66.6
MS.gene058696.t1 MTR_6g086825 26.882 279 173 14 48 305 193 461 5.12e-12 66.6
MS.gene058696.t1 MTR_4g061340 27.570 214 121 8 31 231 118 310 5.69e-12 66.2
MS.gene058696.t1 MTR_3g006530 25.854 205 120 7 31 230 145 322 6.24e-12 66.2
MS.gene058696.t1 MTR_2g024100 28.205 195 116 8 48 230 122 304 1.62e-11 64.7
MS.gene058696.t1 MTR_7g017040 24.834 302 168 12 32 300 119 394 1.80e-11 64.7
MS.gene058696.t1 MTR_8g467140 29.108 213 125 10 33 240 129 320 1.87e-11 64.3
MS.gene058696.t1 MTR_7g013590 30.097 206 122 11 33 231 129 319 2.11e-11 64.3
MS.gene058696.t1 MTR_7g022670 30.112 269 134 12 8 235 23 278 2.20e-11 64.3
MS.gene058696.t1 MTR_5g007610 27.982 218 136 9 22 230 125 330 2.81e-11 64.3
MS.gene058696.t1 MTR_7g069550 27.778 270 146 13 30 274 128 373 3.21e-11 63.9
MS.gene058696.t1 MTR_2g022000 26.180 233 139 10 33 238 130 356 3.54e-11 63.9
MS.gene058696.t1 MTR_3g083010 26.904 197 115 10 48 230 134 315 3.91e-11 63.5
MS.gene058696.t1 MTR_2g104340 27.660 282 157 13 48 300 129 392 4.18e-11 63.5
MS.gene058696.t1 MTR_2g055970 28.470 281 159 14 33 299 308 560 4.41e-11 63.9
MS.gene058696.t1 MTR_2g031680 25.926 216 145 8 21 230 80 286 4.67e-11 63.5
MS.gene058696.t1 MTR_3g013740 28.846 208 123 9 31 231 148 337 5.29e-11 63.2
MS.gene058696.t1 MTR_1g068860 24.658 219 149 8 33 245 92 300 5.73e-11 63.2
MS.gene058696.t1 MTR_8g012090 28.141 199 104 8 48 241 141 305 6.12e-11 62.8
MS.gene058696.t1 MTR_6g027910 28.319 226 132 11 31 244 110 317 6.40e-11 62.8
MS.gene058696.t1 MTR_5g009060 27.273 209 128 9 31 230 143 336 6.83e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058696.t1 AT3G06240 29.255 188 113 7 47 231 183 353 2.71e-13 70.5
MS.gene058696.t1 AT4G12560 28.054 221 145 10 21 231 82 298 3.74e-11 63.9
MS.gene058696.t1 AT4G12560 28.054 221 145 10 21 231 82 298 3.74e-11 63.9
MS.gene058696.t1 AT4G12560 28.054 221 145 10 21 231 82 298 3.74e-11 63.9

Find 61 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTATTGCCTTTGATTTAA+AGG 0.142829 7.4:+26510544 MS.gene058696:CDS
TTTGATGTATTGGTACTTAA+TGG 0.184691 7.4:+26510632 MS.gene058696:CDS
GTGTAGAGGGTTTCTATTAC+TGG 0.246771 7.4:+26510142 MS.gene058696:CDS
GATAGCTCTTCCAGATGATT+TGG 0.281172 7.4:+26510583 MS.gene058696:CDS
ACCGTCTACTGATGATTATT+TGG 0.293395 7.4:+26510301 MS.gene058696:CDS
ATGAGGTTACAGTTAAGATA+TGG 0.325643 7.4:+26510678 MS.gene058696:CDS
AACATTGTCGGCATCATTAC+CGG 0.352896 7.4:-26510243 None:intergenic
GGATTCCATAGGTAAAAGTA+TGG 0.356429 7.4:-26510173 None:intergenic
TCATTACCGGCAATGATTAT+AGG 0.357356 7.4:-26510230 None:intergenic
TCTCACTGAGAGCTAATAAC+TGG 0.358828 7.4:+26510393 MS.gene058696:CDS
ATTTCAATAATCACGTCTTC+AGG 0.379038 7.4:-26509836 None:intergenic
TTAATGGACTTATTAGTGTA+TGG 0.381690 7.4:+26510648 MS.gene058696:CDS
TAATAACTGGAAACAAATTC+AGG 0.385142 7.4:+26510406 MS.gene058696:CDS
CTCTCTCCTATAATCATTGC+CGG 0.391526 7.4:+26510224 MS.gene058696:CDS
TAACTAAAATCCAAATCATC+TGG 0.402774 7.4:-26510593 None:intergenic
CATATTCACACGTTTCTGTA+TGG 0.407958 7.4:+26510266 MS.gene058696:CDS
ATGGTTATCATTGTATTCAT+AGG 0.420498 7.4:-26510336 None:intergenic
GGTTTCTATGTCGTGATAAA+CGG 0.421510 7.4:-26510886 None:intergenic
ACAAGCTGTGGTGATATAGT+TGG 0.435329 7.4:+26510788 MS.gene058696:CDS
ACTCTGTATACACGGCCATT+TGG 0.441470 7.4:-26510907 None:intergenic
CTCTGCTTCTCAACAGAGTC+GGG 0.452807 7.4:+26510462 MS.gene058696:CDS
TAGTGTATGGATTTCAAATG+AGG 0.463557 7.4:+26510661 MS.gene058696:CDS
AATACAAAGTGCATTCCTCT+TGG 0.466050 7.4:+26510711 MS.gene058696:CDS
TGTCATTTCCTTTAAATCAA+AGG 0.469429 7.4:-26510552 None:intergenic
ACTTCAACGGCAACCTCGAC+AGG 0.476602 7.4:-26509859 None:intergenic
CTCTGTTGAGAAGCAGAGTC+GGG 0.484587 7.4:-26510457 None:intergenic
AATACAATGATAACCATGTT+CGG 0.493940 7.4:+26510342 MS.gene058696:CDS
GATATCTAATTCATTTCACT+TGG 0.494002 7.4:+26510364 MS.gene058696:CDS
GGCAATAATTACACTCCTAT+CGG 0.499271 7.4:-26510531 None:intergenic
AAACAATCATCTTGAGGAGC+CGG 0.502784 7.4:-26510749 None:intergenic
CGTGTGAATATGAACATTGT+CGG 0.508352 7.4:-26510255 None:intergenic
TAAACTTGATCAGTGCCACT+AGG 0.518219 7.4:-26510944 None:intergenic
ATATTATAGGTTCGTGTAGA+GGG 0.523652 7.4:+26510129 MS.gene058696:intron
TGAGGTTACAGTTAAGATAT+GGG 0.527219 7.4:+26510679 MS.gene058696:CDS
TCACACGTTTCTGTATGGCT+TGG 0.531386 7.4:+26510271 MS.gene058696:CDS
ATCACGACATAGAAACCAAA+TGG 0.537260 7.4:+26510892 MS.gene058696:CDS
ACTCTGCTTCTCAACAGAGT+CGG 0.544704 7.4:+26510461 MS.gene058696:CDS
TACCTATGGAATCCATCCAC+TGG 0.546833 7.4:+26510182 MS.gene058696:CDS
AGAGTCGGGTTAATCTGATA+AGG 0.547210 7.4:-26510443 None:intergenic
GATATTATAGGTTCGTGTAG+AGG 0.550437 7.4:+26510128 MS.gene058696:intron
CTAGGATGCTTTACAAGCTG+TGG 0.564715 7.4:+26510776 MS.gene058696:CDS
ATAGTTGGAACAGATCTTCA+AGG 0.567449 7.4:+26510803 MS.gene058696:CDS
ATCTTCAAGGTGGATTGAAG+AGG 0.569444 7.4:+26510816 MS.gene058696:CDS
TTGAAGAGGTTTAATAACAA+AGG 0.571410 7.4:+26510830 MS.gene058696:CDS
ATAAACGGTAACGATAATAG+AGG 0.574003 7.4:-26510871 None:intergenic
ACTCTGTTGAGAAGCAGAGT+CGG 0.577387 7.4:-26510458 None:intergenic
TGTTTATAGACACCAGTGGA+TGG 0.582109 7.4:-26510194 None:intergenic
AGAGTCGGGTTGTTCTTGAA+CGG 0.600744 7.4:+26510476 MS.gene058696:CDS
ACCAAATAATCATCAGTAGA+CGG 0.606072 7.4:-26510302 None:intergenic
CAGAGTAATACAGACTTCAA+CGG 0.607721 7.4:-26509872 None:intergenic
AAACTTGATCAGTGCCACTA+GGG 0.621520 7.4:-26510943 None:intergenic
TTCATAATCATGAGACCGAT+AGG 0.629912 7.4:+26510516 MS.gene058696:CDS
GATTCCATAGGTAAAAGTAT+GGG 0.634296 7.4:-26510172 None:intergenic
TATTTGTTTATAGACACCAG+TGG 0.644238 7.4:-26510198 None:intergenic
GCAATGATTATAGGAGAGAG+AGG 0.651818 7.4:-26510221 None:intergenic
AAGCAGAGACTCTGTATACA+CGG 0.652046 7.4:-26510915 None:intergenic
TGATTATTGAAATCCTGTCG+AGG 0.656547 7.4:+26509846 MS.gene058696:CDS
ATGAATTAGATATCCGAACA+TGG 0.657086 7.4:-26510355 None:intergenic
TCTCTGCTTTCACTCCCTAG+TGG 0.664070 7.4:+26510929 MS.gene058696:CDS
CACCAGTGGATGGATTCCAT+AGG 0.664274 7.4:-26510184 None:intergenic
GTTGGAACAGATCTTCAAGG+TGG 0.676978 7.4:+26510806 MS.gene058696:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGCATTAAAATCTATTGTT+AGG - chr7.4:26510042-26510061 None:intergenic 20.0%
!! TGCATTAAAATCTATTGTTA+GGG - chr7.4:26510041-26510060 None:intergenic 20.0%
!!! AATTATTGCCTTTGATTTAA+AGG + chr7.4:26510544-26510563 MS.gene058696:CDS 20.0%
!!! ATGATTATTTGGTAGTTTTT+GGG + chr7.4:26510312-26510331 MS.gene058696:CDS 20.0%
! AAAATCACAAGTTTATGTGT+GGG - chr7.4:26509977-26509996 None:intergenic 25.0%
! AAAATGTGAAGTTGCAAAAT+TGG - chr7.4:26509939-26509958 None:intergenic 25.0%
! AAATGTGAAGTTGCAAAATT+GGG - chr7.4:26509938-26509957 None:intergenic 25.0%
! AATACAATGATAACCATGTT+CGG + chr7.4:26510342-26510361 MS.gene058696:CDS 25.0%
! ATGGTTATCATTGTATTCAT+AGG - chr7.4:26510339-26510358 None:intergenic 25.0%
! GATATCTAATTCATTTCACT+TGG + chr7.4:26510364-26510383 MS.gene058696:CDS 25.0%
! TAACTAAAATCCAAATCATC+TGG - chr7.4:26510596-26510615 None:intergenic 25.0%
! TAATAACTGGAAACAAATTC+AGG + chr7.4:26510406-26510425 MS.gene058696:CDS 25.0%
! TTGAAGAGGTTTAATAACAA+AGG + chr7.4:26510830-26510849 MS.gene058696:CDS 25.0%
!! TGTCATTTCCTTTAAATCAA+AGG - chr7.4:26510555-26510574 None:intergenic 25.0%
!! TTTGATGTATTGGTACTTAA+TGG + chr7.4:26510632-26510651 MS.gene058696:CDS 25.0%
!!! GATGATTATTTGGTAGTTTT+TGG + chr7.4:26510311-26510330 MS.gene058696:CDS 25.0%
!!! TACTAGAGATTTTGATGTAT+TGG + chr7.4:26510622-26510641 MS.gene058696:CDS 25.0%
!!! TTAATGGACTTATTAGTGTA+TGG + chr7.4:26510648-26510667 MS.gene058696:CDS 25.0%
ACCAAATAATCATCAGTAGA+CGG - chr7.4:26510305-26510324 None:intergenic 30.0%
AGTGAAAAACAATCATCTTG+AGG - chr7.4:26510758-26510777 None:intergenic 30.0%
ATAAACGGTAACGATAATAG+AGG - chr7.4:26510874-26510893 None:intergenic 30.0%
ATATTATAGGTTCGTGTAGA+GGG + chr7.4:26510129-26510148 MS.gene058696:intron 30.0%
ATGAATTAGATATCCGAACA+TGG - chr7.4:26510358-26510377 None:intergenic 30.0%
ATGAGGTTACAGTTAAGATA+TGG + chr7.4:26510678-26510697 MS.gene058696:CDS 30.0%
ATTTCAATAATCACGTCTTC+AGG - chr7.4:26509839-26509858 None:intergenic 30.0%
CTATAATATCAGGATCAGAT+CGG - chr7.4:26510118-26510137 None:intergenic 30.0%
GAAAATCACAAGTTTATGTG+TGG - chr7.4:26509978-26509997 None:intergenic 30.0%
TAGTGTATGGATTTCAAATG+AGG + chr7.4:26510661-26510680 MS.gene058696:CDS 30.0%
TATTTGTTTATAGACACCAG+TGG - chr7.4:26510201-26510220 None:intergenic 30.0%
TGAGGTTACAGTTAAGATAT+GGG + chr7.4:26510679-26510698 MS.gene058696:CDS 30.0%
! GATTCCATAGGTAAAAGTAT+GGG - chr7.4:26510175-26510194 None:intergenic 30.0%
! TTTACCCATACTTTTACCTA+TGG + chr7.4:26510168-26510187 MS.gene058696:CDS 30.0%
!! CAAGATGATTGTTTTTCACT+AGG + chr7.4:26510758-26510777 MS.gene058696:CDS 30.0%
!!! GGTTTATGAGCTTTTTTGAA+AGG - chr7.4:26510013-26510032 None:intergenic 30.0%
!!! TCTTGAACGGTTTTATTCAT+TGG + chr7.4:26510489-26510508 MS.gene058696:CDS 30.0%
AAATCTATTGTTAGGGCTTC+AGG - chr7.4:26510034-26510053 None:intergenic 35.0%
AATACAAAGTGCATTCCTCT+TGG + chr7.4:26510711-26510730 MS.gene058696:CDS 35.0%
ACCGTCTACTGATGATTATT+TGG + chr7.4:26510301-26510320 MS.gene058696:CDS 35.0%
ATAGTTGGAACAGATCTTCA+AGG + chr7.4:26510803-26510822 MS.gene058696:CDS 35.0%
ATCACGACATAGAAACCAAA+TGG + chr7.4:26510892-26510911 MS.gene058696:CDS 35.0%
ATGCATAGAAAAAGTCCAAG+AGG - chr7.4:26510729-26510748 None:intergenic 35.0%
CAGAGTAATACAGACTTCAA+CGG - chr7.4:26509875-26509894 None:intergenic 35.0%
CATATTCACACGTTTCTGTA+TGG + chr7.4:26510266-26510285 MS.gene058696:CDS 35.0%
CGATCTGATCCTGATATTAT+AGG + chr7.4:26510116-26510135 MS.gene058696:intron 35.0%
CGTGTGAATATGAACATTGT+CGG - chr7.4:26510258-26510277 None:intergenic 35.0%
CTACACGAACCTATAATATC+AGG - chr7.4:26510128-26510147 None:intergenic 35.0%
GATATTATAGGTTCGTGTAG+AGG + chr7.4:26510128-26510147 MS.gene058696:intron 35.0%
GGATTCCATAGGTAAAAGTA+TGG - chr7.4:26510176-26510195 None:intergenic 35.0%
GGCAATAATTACACTCCTAT+CGG - chr7.4:26510534-26510553 None:intergenic 35.0%
GGTTTCTATGTCGTGATAAA+CGG - chr7.4:26510889-26510908 None:intergenic 35.0%
TCATTACCGGCAATGATTAT+AGG - chr7.4:26510233-26510252 None:intergenic 35.0%
TGATTATTGAAATCCTGTCG+AGG + chr7.4:26509846-26509865 MS.gene058696:CDS 35.0%
TTCATAATCATGAGACCGAT+AGG + chr7.4:26510516-26510535 MS.gene058696:CDS 35.0%
!! TTGGACTTTTTCTATGCATC+CGG + chr7.4:26510730-26510749 MS.gene058696:CDS 35.0%
AAACAATCATCTTGAGGAGC+CGG - chr7.4:26510752-26510771 None:intergenic 40.0%
AACATTGTCGGCATCATTAC+CGG - chr7.4:26510246-26510265 None:intergenic 40.0%
AAGCAGAGACTCTGTATACA+CGG - chr7.4:26510918-26510937 None:intergenic 40.0%
ACAAGCTGTGGTGATATAGT+TGG + chr7.4:26510788-26510807 MS.gene058696:CDS 40.0%
AGAGTCGGGTTAATCTGATA+AGG - chr7.4:26510446-26510465 None:intergenic 40.0%
CTCTCTCCTATAATCATTGC+CGG + chr7.4:26510224-26510243 MS.gene058696:CDS 40.0%
GATAGCTCTTCCAGATGATT+TGG + chr7.4:26510583-26510602 MS.gene058696:CDS 40.0%
GCAATGATTATAGGAGAGAG+AGG - chr7.4:26510224-26510243 None:intergenic 40.0%
GTGTAGAGGGTTTCTATTAC+TGG + chr7.4:26510142-26510161 MS.gene058696:CDS 40.0%
TCGGTGAGGCAAAAAAATCA+AGG - chr7.4:26510099-26510118 None:intergenic 40.0%
TCTCACTGAGAGCTAATAAC+TGG + chr7.4:26510393-26510412 MS.gene058696:CDS 40.0%
TGTTTATAGACACCAGTGGA+TGG - chr7.4:26510197-26510216 None:intergenic 40.0%
! AAACTTGATCAGTGCCACTA+GGG - chr7.4:26510946-26510965 None:intergenic 40.0%
! TAAACTTGATCAGTGCCACT+AGG - chr7.4:26510947-26510966 None:intergenic 40.0%
!! ATCTTCAAGGTGGATTGAAG+AGG + chr7.4:26510816-26510835 MS.gene058696:CDS 40.0%
!!! GAACGGTTTTATTCATTGGC+TGG + chr7.4:26510493-26510512 MS.gene058696:CDS 40.0%
ACTCTGCTTCTCAACAGAGT+CGG + chr7.4:26510461-26510480 MS.gene058696:CDS 45.0%
ACTCTGTATACACGGCCATT+TGG - chr7.4:26510910-26510929 None:intergenic 45.0%
ACTCTGTTGAGAAGCAGAGT+CGG - chr7.4:26510461-26510480 None:intergenic 45.0%
ATATCAGGATCAGATCGGTG+AGG - chr7.4:26510113-26510132 None:intergenic 45.0%
CTAGGATGCTTTACAAGCTG+TGG + chr7.4:26510776-26510795 MS.gene058696:CDS 45.0%
GCAAGTGCGTCTGTAAGTTA+TGG + chr7.4:26509894-26509913 MS.gene058696:intron 45.0%
GTTGGAACAGATCTTCAAGG+TGG + chr7.4:26510806-26510825 MS.gene058696:CDS 45.0%
TACCTATGGAATCCATCCAC+TGG + chr7.4:26510182-26510201 MS.gene058696:CDS 45.0%
TCACACGTTTCTGTATGGCT+TGG + chr7.4:26510271-26510290 MS.gene058696:CDS 45.0%
! AGAGTCGGGTTGTTCTTGAA+CGG + chr7.4:26510476-26510495 MS.gene058696:CDS 45.0%
CTCTGCTTCTCAACAGAGTC+GGG + chr7.4:26510462-26510481 MS.gene058696:CDS 50.0%
CTCTGTTGAGAAGCAGAGTC+GGG - chr7.4:26510460-26510479 None:intergenic 50.0%
TCTCTGCTTTCACTCCCTAG+TGG + chr7.4:26510929-26510948 MS.gene058696:CDS 50.0%
! CACCAGTGGATGGATTCCAT+AGG - chr7.4:26510187-26510206 None:intergenic 50.0%
ACTTCAACGGCAACCTCGAC+AGG - chr7.4:26509862-26509881 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 26509812 26510967 26509812 ID=MS.gene058696
chr7.4 mRNA 26509812 26510967 26509812 ID=MS.gene058696.t1;Parent=MS.gene058696
chr7.4 exon 26509812 26509905 26509812 ID=MS.gene058696.t1.exon1;Parent=MS.gene058696.t1
chr7.4 CDS 26509812 26509905 26509812 ID=cds.MS.gene058696.t1;Parent=MS.gene058696.t1
chr7.4 exon 26510138 26510967 26510138 ID=MS.gene058696.t1.exon2;Parent=MS.gene058696.t1
chr7.4 CDS 26510138 26510967 26510138 ID=cds.MS.gene058696.t1;Parent=MS.gene058696.t1
Gene Sequence

>MS.gene058696

ATGGAGAAGAAGATATATTATCTACCTGAAGACGTGATTATTGAAATCCTGTCGAGGTTGCCGTTGAAGTCTGTATTACTCTGCAAGTGCGTCTGTAAGTTATGGCTTTCTATCATCTCTGATCCCAATTTTGCAACTTCACATTTTCAACTTGCTGCATCACCCACACATAAACTTGTGATTTTCAGATATTATAATCCTTTCAAAAAAGCTCATAAACCTGAAGCCCTAACAATAGATTTTAATGCATCGCTCAGCGATGATTCTGCTTATCATTCACTAAGCCTTGATTTTTTTGCCTCACCGATCTGATCCTGATATTATAGGTTCGTGTAGAGGGTTTCTATTACTGGACGTTTACCCATACTTTTACCTATGGAATCCATCCACTGGTGTCTATAAACAAATACCTCTCTCTCCTATAATCATTGCCGGTAATGATGCCGACAATGTTCATATTCACACGTTTCTGTATGGCTTGGCATATGAACCGTCTACTGATGATTATTTGGTAGTTTTTGGGTCCTATGAATACAATGATAACCATGTTCGGATATCTAATTCATTTCACTTGGAGATTTTCTCACTGAGAGCTAATAACTGGAAACAAATTCAGGTTGCTTCTCATTTGCCTTATCAGATTAACCCGACTCTGCTTCTCAACAGAGTCGGGTTGTTCTTGAACGGTTTTATTCATTGGCTGGTTCATAATCATGAGACCGATAGGAGTGTAATTATTGCCTTTGATTTAAAGGAAATGACACTGTCAGAGATAGCTCTTCCAGATGATTTGGATTTTAGTTATATTTATACTAGAGATTTTGATGTATTGGTACTTAATGGACTTATTAGTGTATGGATTTCAAATGAGGTTACAGTTAAGATATGGGTGATGCAAGAATACAAAGTGCATTCCTCTTGGACTTTTTCTATGCATCCGGCTCCTCAAGATGATTGTTTTTCACTAGGATGCTTTACAAGCTGTGGTGATATAGTTGGAACAGATCTTCAAGGTGGATTGAAGAGGTTTAATAACAAAGGACAGCTGCTAGAATATCACCTCTATTATCGTTACCGTTTATCACGACATAGAAACCAAATGGCCGTGTATACAGAGTCTCTGCTTTCACTCCCTAGTGGCACTGATCAAGTTTAA
Protein sequence

>MS.gene058696.t1

MEKKIYYLPEDVIIEILSRLPLKSVLLCKCVCSCRGFLLLDVYPYFYLWNPSTGVYKQIPLSPIIIAGNDADNVHIHTFLYGLAYEPSTDDYLVVFGSYEYNDNHVRISNSFHLEIFSLRANNWKQIQVASHLPYQINPTLLLNRVGLFLNGFIHWLVHNHETDRSVIIAFDLKEMTLSEIALPDDLDFSYIYTRDFDVLVLNGLISVWISNEVTVKIWVMQEYKVHSSWTFSMHPAPQDDCFSLGCFTSCGDIVGTDLQGGLKRFNNKGQLLEYHLYYRYRLSRHRNQMAVYTESLLSLPSGTDQV