AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036557


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036557.t1 MTR_4g118380 76.751 357 47 2 1 321 1 357 0.0 512
MS.gene036557.t1 MTR_6g060650 67.553 376 79 2 1 342 1 367 1.34e-163 461
MS.gene036557.t1 MTR_4g118400 68.421 342 60 6 1 342 1 294 1.78e-155 438
MS.gene036557.t1 MTR_4g117720 61.782 348 107 6 1 342 44 371 1.90e-136 393
MS.gene036557.t1 MTR_3g103020 52.895 380 121 6 1 342 13 372 5.62e-122 356
MS.gene036557.t1 MTR_3g034180 51.928 389 120 9 1 342 115 483 1.88e-115 343
MS.gene036557.t1 MTR_3g034130 50.394 381 123 8 1 334 1 362 2.21e-108 321
MS.gene036557.t1 MTR_4g109280 51.989 377 120 11 1 341 1 352 1.28e-107 319
MS.gene036557.t1 MTR_4g117850 50.392 383 117 10 4 341 19 373 1.05e-106 317
MS.gene036557.t1 MTR_3g034160 51.157 389 123 10 1 342 1 369 3.39e-106 316
MS.gene036557.t1 MTR_4g094365 48.158 380 137 10 1 342 1 358 1.45e-101 303
MS.gene036557.t1 MTR_4g122850 49.185 368 122 12 19 342 12 358 2.95e-100 301
MS.gene036557.t1 MTR_4g109270 49.479 384 126 10 1 342 1 358 7.23e-99 296
MS.gene036557.t1 MTR_4g116330 45.932 381 143 10 2 342 17 374 2.93e-93 283
MS.gene036557.t1 MTR_5g097210 47.656 384 131 11 2 343 3 358 3.42e-91 277
MS.gene036557.t1 MTR_4g117770 47.105 380 144 9 1 342 1 361 4.53e-91 277
MS.gene036557.t1 MTR_4g117810 47.105 380 144 9 1 342 1 361 4.53e-91 277
MS.gene036557.t1 MTR_4g023080 46.579 380 131 12 1 341 1 347 6.07e-91 276
MS.gene036557.t1 MTR_4g023090 44.501 391 145 9 2 342 10 378 8.65e-91 277
MS.gene036557.t1 MTR_4g117780 45.789 380 149 10 1 342 1 361 2.93e-90 275
MS.gene036557.t1 MTR_4g023130 48.851 348 129 10 1 341 1 306 4.86e-89 270
MS.gene036557.t1 MTR_5g070080 45.663 392 146 10 2 342 4 379 6.12e-87 267
MS.gene036557.t1 MTR_8g032390 49.008 353 149 13 3 342 35 369 8.30e-87 266
MS.gene036557.t1 MTR_8g433040 46.825 378 131 10 3 342 13 358 3.45e-86 264
MS.gene036557.t1 MTR_8g032380 46.825 378 131 10 3 342 13 358 3.45e-86 264
MS.gene036557.t1 MTR_1g055135 44.920 374 158 11 4 342 9 369 1.53e-85 263
MS.gene036557.t1 MTR_5g070130 43.669 387 153 9 1 342 4 370 3.96e-84 260
MS.gene036557.t1 MTR_4g021785 43.700 373 140 8 7 341 8 348 8.81e-83 255
MS.gene036557.t1 MTR_4g117870 48.718 312 104 7 32 342 5 261 2.78e-82 251
MS.gene036557.t1 MTR_1g055195 49.667 300 112 9 51 342 204 472 6.81e-81 254
MS.gene036557.t1 MTR_4g023070 42.377 387 144 11 8 341 3 363 4.79e-80 249
MS.gene036557.t1 MTR_4g117750 45.503 378 140 9 7 343 2 354 1.09e-79 251
MS.gene036557.t1 MTR_4g117750 57.364 129 52 2 216 342 350 477 4.76e-36 136
MS.gene036557.t1 MTR_4g023120 42.010 388 144 12 8 341 3 363 2.34e-79 247
MS.gene036557.t1 MTR_4g023190 46.354 384 133 15 1 342 1 353 1.57e-78 244
MS.gene036557.t1 MTR_5g070088 42.377 387 159 9 7 342 6 379 3.09e-78 244
MS.gene036557.t1 MTR_4g023380 41.353 399 139 8 2 342 10 371 7.18e-78 243
MS.gene036557.t1 MTR_4g023150 45.312 384 138 14 1 342 1 354 1.15e-75 237
MS.gene036557.t1 MTR_4g023200 47.452 314 130 13 34 342 71 354 5.05e-72 228
MS.gene036557.t1 MTR_4g118370 50.195 257 88 7 93 343 33 255 6.14e-72 224
MS.gene036557.t1 MTR_4g023440 40.483 373 124 8 6 342 16 326 1.22e-71 226
MS.gene036557.t1 MTR_4g116320 57.848 223 73 7 128 342 43 252 3.48e-70 219
MS.gene036557.t1 MTR_4g116330 40.420 381 125 10 2 342 17 335 6.00e-70 222
MS.gene036557.t1 MTR_8g433030 44.729 351 134 14 3 342 35 336 2.85e-69 220
MS.gene036557.t1 MTR_8g013010 45.423 284 99 4 1 249 47 309 4.36e-68 216
MS.gene036557.t1 MTR_1g055165 39.837 369 130 12 4 342 6 312 2.37e-67 214
MS.gene036557.t1 MTR_7g079370 43.963 323 147 10 34 342 48 350 2.20e-65 211
MS.gene036557.t1 MTR_8g040935 55.450 211 78 5 139 342 1 202 5.77e-65 204
MS.gene036557.t1 MTR_4g121580 39.481 385 140 13 1 338 1 339 2.47e-63 206
MS.gene036557.t1 MTR_7g079400 41.346 312 150 9 41 342 43 331 1.46e-62 202
MS.gene036557.t1 MTR_8g102520 38.983 354 166 13 1 342 1 316 4.09e-59 193
MS.gene036557.t1 MTR_1g055250 47.012 251 108 10 99 341 27 260 4.20e-58 191
MS.gene036557.t1 MTR_1g055175 54.271 199 73 7 151 342 8 195 1.56e-56 182
MS.gene036557.t1 MTR_4g116340 47.391 230 89 4 1 206 26 247 7.70e-54 177
MS.gene036557.t1 MTR_6g463430 47.964 221 85 7 126 342 2 196 8.24e-50 165
MS.gene036557.t1 MTR_4g117530 40.891 247 98 4 98 342 47 247 1.70e-47 161
MS.gene036557.t1 MTR_2g048580 35.659 387 153 16 1 342 1 336 2.37e-46 160
MS.gene036557.t1 MTR_7g117720 47.236 199 79 5 1 180 1 192 4.97e-43 150
MS.gene036557.t1 MTR_7g117720 54.455 101 41 3 248 343 172 272 2.20e-21 92.4
MS.gene036557.t1 MTR_7g079420 38.710 279 114 11 78 342 903 1138 3.82e-42 157
MS.gene036557.t1 MTR_4g118360 67.273 110 32 2 235 342 13 120 3.54e-41 140
MS.gene036557.t1 MTR_4g117430 53.165 158 51 6 93 248 15 151 9.31e-41 140
MS.gene036557.t1 MTR_4g114700 36.462 277 110 9 74 341 2 221 3.37e-39 139
MS.gene036557.t1 MTR_8g098830 42.697 178 88 5 146 319 29 196 6.56e-34 125
MS.gene036557.t1 MTR_4g122860 40.513 195 70 7 157 342 157 314 1.58e-31 121
MS.gene036557.t1 MTR_5g023000 65.169 89 31 0 254 342 5 93 2.06e-31 114
MS.gene036557.t1 MTR_7g079450 47.222 144 62 4 200 342 1 131 6.92e-29 108
MS.gene036557.t1 MTR_6g034720 51.351 111 51 2 104 211 53 163 4.42e-24 98.6
MS.gene036557.t1 MTR_0667s0010 27.011 348 209 11 8 316 6 347 4.95e-24 102
MS.gene036557.t1 MTR_2g031720 27.536 345 213 11 8 320 6 345 1.58e-23 100
MS.gene036557.t1 MTR_4g133170 28.086 324 187 14 8 299 4 313 4.92e-23 99.0
MS.gene036557.t1 MTR_5g057790 31.962 316 156 14 8 287 46 338 1.01e-21 95.5
MS.gene036557.t1 MTR_2g031640 26.393 341 216 12 8 319 6 340 2.54e-21 94.0
MS.gene036557.t1 MTR_2g031680 26.471 340 214 11 8 319 6 337 2.61e-21 94.0
MS.gene036557.t1 MTR_2g024110 26.814 317 188 12 8 291 4 309 3.58e-21 93.6
MS.gene036557.t1 MTR_2g021150 26.842 380 210 16 6 340 12 368 4.10e-21 93.6
MS.gene036557.t1 MTR_1g094210 26.271 354 195 11 2 317 51 376 8.49e-21 92.8
MS.gene036557.t1 MTR_3g007360 28.926 363 192 17 11 336 55 388 9.52e-21 92.8
MS.gene036557.t1 MTR_1g094210 26.124 356 197 11 2 319 51 378 1.51e-20 92.0
MS.gene036557.t1 MTR_4g109290 42.857 140 59 5 6 137 7 133 3.74e-20 87.0
MS.gene036557.t1 MTR_5g069120 42.754 138 60 5 32 160 50 177 7.33e-20 85.9
MS.gene036557.t1 MTR_5g057710 30.794 315 159 15 8 286 46 337 7.18e-19 87.0
MS.gene036557.t1 MTR_1g068835 27.160 324 192 13 8 299 4 315 9.90e-19 86.7
MS.gene036557.t1 MTR_3g007330 27.707 314 155 13 6 278 46 328 1.06e-18 86.7
MS.gene036557.t1 MTR_2g026010 29.392 296 158 13 60 329 72 342 1.15e-18 86.7
MS.gene036557.t1 MTR_3g006670 27.619 315 152 13 6 273 47 332 2.71e-18 85.5
MS.gene036557.t1 MTR_1g068875 25.153 326 195 11 8 299 4 314 4.31e-18 84.7
MS.gene036557.t1 MTR_3g036430 28.214 280 161 9 6 273 18 269 5.87e-18 84.0
MS.gene036557.t1 MTR_2g426020 23.229 353 215 10 8 316 6 346 5.96e-18 84.7
MS.gene036557.t1 MTR_4g108820 29.032 279 169 9 5 280 39 291 1.21e-17 82.8
MS.gene036557.t1 MTR_8g464770 25.773 388 223 13 3 342 7 377 1.45e-17 83.2
MS.gene036557.t1 MTR_3g083010 25.815 399 223 15 8 342 6 395 2.36e-17 82.8
MS.gene036557.t1 MTR_5g057690 28.846 312 161 15 8 287 46 328 2.45e-17 82.8
MS.gene036557.t1 MTR_2g028130 25.588 340 194 12 8 296 5 336 2.45e-17 82.8
MS.gene036557.t1 MTR_3g014540 30.945 307 151 14 6 273 27 311 2.63e-17 82.4
MS.gene036557.t1 MTR_2g028160 25.707 389 213 16 8 333 5 380 3.89e-17 82.4
MS.gene036557.t1 MTR_6g027910 28.238 386 198 19 11 340 12 374 9.99e-17 80.9
MS.gene036557.t1 MTR_3g009300 29.310 290 163 13 11 286 37 298 1.58e-16 80.1
MS.gene036557.t1 MTR_1g055200 44.554 101 43 3 76 168 4 99 2.20e-16 74.3
MS.gene036557.t1 MTR_3g009310 29.582 311 158 13 6 278 40 327 2.38e-16 79.7
MS.gene036557.t1 MTR_2g426070 26.301 365 204 12 9 320 7 359 2.80e-16 79.7
MS.gene036557.t1 MTR_2g024100 27.757 263 165 10 62 303 80 338 3.26e-16 79.3
MS.gene036557.t1 MTR_7g069550 26.185 401 215 15 2 337 7 391 3.82e-16 79.3
MS.gene036557.t1 MTR_3g014570 28.354 328 158 15 6 286 27 324 3.92e-16 79.0
MS.gene036557.t1 MTR_1g068860 25.890 309 173 11 8 278 4 294 4.86e-16 78.6
MS.gene036557.t1 MTR_3g010920 25.132 378 202 11 6 340 42 381 4.96e-16 78.6
MS.gene036557.t1 MTR_5g011200 27.303 304 168 13 8 275 17 303 7.12e-16 78.2
MS.gene036557.t1 MTR_2g426090 25.915 355 197 14 11 317 9 345 7.36e-16 78.6
MS.gene036557.t1 MTR_4g013180 26.579 380 197 17 7 321 10 372 7.40e-16 78.6
MS.gene036557.t1 MTR_2g028140 25.460 326 170 13 8 273 5 317 1.22e-15 77.8
MS.gene036557.t1 MTR_8g467140 26.198 313 180 14 7 288 31 323 1.27e-15 77.0
MS.gene036557.t1 MTR_2g025960 29.134 254 135 13 79 303 6 243 2.15e-15 76.3
MS.gene036557.t1 MTR_2g025420 25.737 373 213 15 8 320 6 374 2.75e-15 76.6
MS.gene036557.t1 MTR_7g070440 28.615 325 163 16 7 282 6 310 3.12e-15 76.3
MS.gene036557.t1 MTR_8g013005 62.264 53 20 0 290 342 1 53 7.27e-15 68.6
MS.gene036557.t1 MTR_6g086825 24.566 403 215 15 7 338 69 453 8.46e-15 75.5
MS.gene036557.t1 MTR_2g078900 27.010 311 152 14 6 273 31 309 1.19e-14 74.3
MS.gene036557.t1 MTR_7g079640 27.297 370 195 15 2 321 7 352 1.41e-14 74.3
MS.gene036557.t1 MTR_7g056820 25.613 367 204 16 6 319 5 355 2.47e-14 73.6
MS.gene036557.t1 MTR_3g013740 27.928 333 159 17 8 285 44 350 2.63e-14 73.9
MS.gene036557.t1 MTR_4g061340 26.646 319 172 13 6 284 24 320 2.70e-14 73.6
MS.gene036557.t1 MTR_7g028660 26.316 323 174 11 5 278 8 315 2.83e-14 73.6
MS.gene036557.t1 MTR_3g010590 27.213 305 150 14 6 273 37 306 2.86e-14 73.6
MS.gene036557.t1 MTR_5g007610 28.000 325 172 16 6 287 39 344 3.37e-14 73.6
MS.gene036557.t1 MTR_0054s0090 23.430 414 211 17 7 341 16 402 4.12e-14 73.2
MS.gene036557.t1 MTR_3g013770 28.526 312 156 15 6 273 31 319 4.41e-14 73.2
MS.gene036557.t1 MTR_2g031700 27.434 226 133 8 8 208 6 225 5.89e-14 71.6
MS.gene036557.t1 MTR_3g010970 30.457 197 100 9 79 273 155 316 8.58e-14 72.0
MS.gene036557.t1 MTR_0054s0100 23.373 415 214 16 3 338 12 401 1.40e-13 71.6
MS.gene036557.t1 MTR_2g021050 24.432 352 193 14 8 315 5 327 1.48e-13 71.2
MS.gene036557.t1 MTR_1g097490 25.543 368 213 14 8 340 49 390 1.67e-13 71.2
MS.gene036557.t1 MTR_2g078870 28.962 183 99 6 94 273 78 232 1.84e-13 70.5
MS.gene036557.t1 MTR_7g016930 25.962 312 186 10 2 279 10 310 2.39e-13 70.5
MS.gene036557.t1 MTR_7g057270 26.480 321 179 16 8 278 26 339 4.77e-13 70.1
MS.gene036557.t1 MTR_7g056760 23.192 401 227 14 5 340 20 404 5.18e-13 69.7
MS.gene036557.t1 MTR_5g057020 27.742 310 162 14 8 287 46 323 5.46e-13 69.3
MS.gene036557.t1 MTR_8g046310 24.274 379 220 12 11 343 19 376 5.60e-13 69.7
MS.gene036557.t1 MTR_7g017130 26.829 328 161 13 8 273 18 328 6.45e-13 69.7
MS.gene036557.t1 MTR_5g022850 25.439 342 196 12 7 318 15 327 7.63e-13 68.9
MS.gene036557.t1 MTR_0044s0300 28.758 306 154 13 6 273 36 315 7.80e-13 69.3
MS.gene036557.t1 MTR_7g017170 26.829 328 161 13 8 273 18 328 8.44e-13 69.3
MS.gene036557.t1 MTR_7g060940 25.124 402 212 17 1 338 15 391 9.55e-13 68.9
MS.gene036557.t1 MTR_3g010870 25.587 383 204 17 6 340 35 384 1.15e-12 68.6
MS.gene036557.t1 MTR_4g122840 36.232 138 43 4 207 342 164 258 1.16e-12 67.8
MS.gene036557.t1 MTR_4g037465 23.232 396 223 17 5 341 18 391 1.20e-12 68.6
MS.gene036557.t1 MTR_4g023430 48.684 76 36 1 270 342 141 216 1.32e-12 66.6
MS.gene036557.t1 MTR_4g070550 24.375 320 175 12 8 273 5 311 1.35e-12 68.6
MS.gene036557.t1 MTR_6g053260 25.000 312 164 14 6 273 335 620 1.43e-12 68.9
MS.gene036557.t1 MTR_3g007430 27.181 298 163 12 11 273 46 324 2.04e-12 68.2
MS.gene036557.t1 MTR_0128s0020 24.250 400 208 18 8 338 18 391 2.30e-12 67.8
MS.gene036557.t1 MTR_0760s0010 28.523 298 141 14 16 274 55 319 4.16e-12 67.0
MS.gene036557.t1 MTR_2g046920 24.437 311 185 13 4 282 20 312 4.40e-12 67.0
MS.gene036557.t1 MTR_1g097560 25.072 347 192 15 8 316 36 352 5.92e-12 66.6
MS.gene036557.t1 MTR_5g057643 31.169 231 114 8 8 203 46 266 1.35e-11 64.7
MS.gene036557.t1 MTR_7g017040 25.064 391 230 12 2 338 10 391 1.67e-11 65.1
MS.gene036557.t1 MTR_3g030250 23.762 303 165 11 6 273 35 306 1.77e-11 65.1
MS.gene036557.t1 MTR_6g021880 26.923 286 170 11 17 290 71 329 1.85e-11 65.1
MS.gene036557.t1 MTR_3g011100 26.444 329 173 16 6 289 233 537 2.01e-11 65.5
MS.gene036557.t1 MTR_3g010430 25.159 314 160 11 6 273 34 318 2.69e-11 64.7
MS.gene036557.t1 MTR_2g104340 24.138 406 215 13 2 338 8 389 2.86e-11 64.7
MS.gene036557.t1 MTR_3g030310 26.582 316 156 16 6 273 19 306 3.10e-11 64.3
MS.gene036557.t1 MTR_5g046260 24.561 285 161 10 6 273 2 249 3.25e-11 63.5
MS.gene036557.t1 MTR_5g037680 23.284 408 214 14 1 338 1 379 3.29e-11 64.7
MS.gene036557.t1 MTR_5g056990 31.579 190 106 9 98 286 16 182 3.48e-11 62.8
MS.gene036557.t1 MTR_2g046830 24.038 312 185 12 4 282 21 313 5.45e-11 63.5
MS.gene036557.t1 MTR_1004s0010 30.392 204 111 10 74 274 114 289 5.92e-11 63.5
MS.gene036557.t1 MTR_3g030240 24.611 386 194 19 6 340 38 377 9.72e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036557.t1 AT4G12560 30.631 222 121 13 79 279 94 303 3.44e-12 67.4
MS.gene036557.t1 AT4G12560 30.631 222 121 13 79 279 94 303 3.44e-12 67.4
MS.gene036557.t1 AT4G12560 30.631 222 121 13 79 279 94 303 3.44e-12 67.4
MS.gene036557.t1 AT3G06240 25.610 246 159 10 73 311 162 390 5.79e-12 66.6

Find 74 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTCATCTATATGGTTT+TGG 0.189552 8.3:+8120468 MS.gene036557:CDS
CATCATTTCATTCATCTATA+TGG 0.228144 8.3:+8120462 MS.gene036557:CDS
CAAATACCTTTGTCTCCTTA+TGG 0.237521 8.3:+8120423 MS.gene036557:CDS
GATTGTGATTTGTGGGTATT+TGG 0.250931 8.3:+8120822 MS.gene036557:CDS
TAATGTATTGAAAGAAATTA+AGG 0.253260 8.3:+8120590 MS.gene036557:CDS
GAAATGATGGACACGTAAAT+TGG 0.268029 8.3:-8120448 None:intergenic
CCCAATTCTGTTGAGGTTGC+CGG 0.285442 8.3:+8120053 MS.gene036557:CDS
ATGGTAGGGTCACTCTTTAA+TGG 0.291271 8.3:+8120651 MS.gene036557:CDS
AAGATGATGTAGTTGAAATA+TGG 0.308827 8.3:+8120871 MS.gene036557:CDS
TAATCAGAGAAGTTCATATA+AGG 0.310951 8.3:-8120624 None:intergenic
TGGTAGGGTCACTCTTTAAT+GGG 0.318907 8.3:+8120652 MS.gene036557:CDS
ACCGGCAACCTCAACAGAAT+TGG 0.325341 8.3:-8120054 None:intergenic
CCACGATGGGGATGCGGATC+AGG 0.349700 8.3:-8120297 None:intergenic
TTGGTGAGTTTCTCAGTGTA+TGG 0.351491 8.3:+8120841 MS.gene036557:CDS
TCTTTAATGGGGCTATTCAC+TGG 0.387565 8.3:+8120664 MS.gene036557:CDS
TGTGCAATTCTCTTTATAGT+AGG 0.427774 8.3:-8121075 None:intergenic
TAATGGGGCTATTCACTGGT+TGG 0.454880 8.3:+8120668 MS.gene036557:CDS
ATTGGAACTGATGGTGAAGT+TGG 0.456865 8.3:+8121008 MS.gene036557:CDS
CCCGTCAGCAGATGATTATA+TGG 0.463314 8.3:+8120497 MS.gene036557:CDS
CCGGCAACCTCAACAGAATT+GGG 0.464802 8.3:-8120053 None:intergenic
TGCTTATCCCAATTCTGTTG+AGG 0.470237 8.3:+8120046 MS.gene036557:CDS
TTTCCTTTCAATTAAATCAA+AGG 0.478785 8.3:-8120727 None:intergenic
AATGTATTGAAAGAAATTAA+GGG 0.482095 8.3:+8120591 MS.gene036557:CDS
AATCAGAGAAGTTCATATAA+GGG 0.489827 8.3:-8120623 None:intergenic
TGGGGATGCGGATCAGGAGG+TGG 0.502365 8.3:-8120291 None:intergenic
CATATAGATGAATGAAATGA+TGG 0.505088 8.3:-8120461 None:intergenic
TTCTCTGATTATTCCATGGT+AGG 0.508178 8.3:+8120636 MS.gene036557:CDS
TTGCCTTTGATTTAATTGAA+AGG 0.515684 8.3:+8120724 MS.gene036557:CDS
AAAATAATAAAATCCACGAT+GGG 0.521874 8.3:-8120310 None:intergenic
AGCAAGTCATGAGGCAGATA+CGG 0.522225 8.3:-8120027 None:intergenic
AACCTACAGATTGTGATTTG+TGG 0.524422 8.3:+8120814 MS.gene036557:CDS
TCTCTGATTATTCCATGGTA+GGG 0.524862 8.3:+8120637 MS.gene036557:CDS
TTGGTGAAGTACGATGAAAA+AGG 0.527194 8.3:+8121032 MS.gene036557:CDS
GCAATTCTCTTTATAGTAGG+AGG 0.528562 8.3:-8121072 None:intergenic
TAACCTTGTTCGCTATCACC+GGG 0.528671 8.3:-8121138 None:intergenic
ACCTACAGATTGTGATTTGT+GGG 0.529972 8.3:+8120815 MS.gene036557:CDS
GAACTTCTCTGATTATTCCA+TGG 0.539752 8.3:+8120632 MS.gene036557:CDS
AGATGATGTAGTTGAAATAT+GGG 0.540044 8.3:+8120872 MS.gene036557:CDS
CAAACTAAACGTTCATGTAG+AGG 0.541245 8.3:+8120336 MS.gene036557:CDS
CCATATAATCATCTGCTGAC+GGG 0.544544 8.3:-8120497 None:intergenic
CGATGGGGATGCGGATCAGG+AGG 0.544858 8.3:-8120294 None:intergenic
AACTGATGGTGAAGTTGGAT+TGG 0.547756 8.3:+8121013 MS.gene036557:CDS
ACACGTAAATTGGAACCATA+AGG 0.548163 8.3:-8120438 None:intergenic
TAAAATCCACGATGGGGATG+CGG 0.550644 8.3:-8120303 None:intergenic
TATTTGTTTGTGAACTCTAG+TGG 0.552733 8.3:-8120406 None:intergenic
AAACTAAACGTTCATGTAGA+GGG 0.556540 8.3:+8120337 MS.gene036557:CDS
TAAAATAATAAAATCCACGA+TGG 0.565805 8.3:-8120311 None:intergenic
GAGGTGGACGCACAAAACTA+AGG 0.567113 8.3:-8120275 None:intergenic
AACCTTGTTCGCTATCACCG+GGG 0.569785 8.3:-8121137 None:intergenic
GGTGATATTATTGGAACTGA+TGG 0.578976 8.3:+8120999 MS.gene036557:CDS
ACCATATAATCATCTGCTGA+CGG 0.579008 8.3:-8120498 None:intergenic
AGTCTTTGCATTCACTCCCC+CGG 0.586455 8.3:+8121120 MS.gene036557:CDS
CTCTGTATACATAGCCACTC+GGG 0.594887 8.3:-8121099 None:intergenic
GGTTCATGTTCAAGATCACC+TGG 0.603390 8.3:-8120795 None:intergenic
TTGGAACCATAAGGAGACAA+AGG 0.610034 8.3:-8120429 None:intergenic
TGTTTGTGAACTCTAGTGGA+TGG 0.611408 8.3:-8120402 None:intergenic
ATTGGAGAGAAGTAATGAGT+GGG 0.619618 8.3:-8120960 None:intergenic
ACCTTGTTCGCTATCACCGG+GGG 0.621298 8.3:-8121136 None:intergenic
ATTAAAGAGTGACCCTACCA+TGG 0.627645 8.3:-8120649 None:intergenic
TATTGGAGAGAAGTAATGAG+TGG 0.628700 8.3:-8120961 None:intergenic
CTCTAGTGGATGGATTCCAT+AGG 0.636511 8.3:-8120392 None:intergenic
ATAGGTAAAATTGTGTGCCA+CGG 0.641710 8.3:-8120374 None:intergenic
ACTCTGTATACATAGCCACT+CGG 0.643817 8.3:-8121100 None:intergenic
CCTGATCCGCATCCCCATCG+TGG 0.645265 8.3:+8120297 MS.gene036557:CDS
AAACGTAAAAGAGACATCAC+CGG 0.646155 8.3:-8120072 None:intergenic
AAATAATAAAATCCACGATG+GGG 0.657033 8.3:-8120309 None:intergenic
AGTACAAAGTGCATTCGTCG+TGG 0.657926 8.3:+8120904 MS.gene036557:CDS
ACCCACAAATCACAATCTGT+AGG 0.659019 8.3:-8120816 None:intergenic
CAGAGAAGTTCATATAAGGG+AGG 0.664094 8.3:-8120620 None:intergenic
GGTAGGGTCACTCTTTAATG+GGG 0.671605 8.3:+8120653 MS.gene036557:CDS
GTCAGCAGATGATTATATGG+TGG 0.681277 8.3:+8120500 MS.gene036557:CDS
AAGTCATGAGGCAGATACGG+TGG 0.683856 8.3:-8120024 None:intergenic
AGAGAATTGCACATCCCGAG+TGG 0.707706 8.3:+8121085 MS.gene036557:CDS
ATTGGGATAAGCAAGTCATG+AGG 0.714760 8.3:-8120036 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGTATTGAAAGAAATTAA+GGG + chr8.3:8120591-8120610 MS.gene036557:CDS 15.0%
!! TAATGTATTGAAAGAAATTA+AGG + chr8.3:8120590-8120609 MS.gene036557:CDS 15.0%
!! AAAATAATAAAATCCACGAT+GGG - chr8.3:8120313-8120332 None:intergenic 20.0%
!! AAAATGTGAATTTGCAAAAT+GGG - chr8.3:8120139-8120158 None:intergenic 20.0%
!! TAAAATAATAAAATCCACGA+TGG - chr8.3:8120314-8120333 None:intergenic 20.0%
!! TTTCCTTTCAATTAAATCAA+AGG - chr8.3:8120730-8120749 None:intergenic 20.0%
!! TTTGATATGAACAAAATTCT+AGG - chr8.3:8120183-8120202 None:intergenic 20.0%
!!! TCATAATTTTTCATCACATT+TGG + chr8.3:8120548-8120567 MS.gene036557:CDS 20.0%
! AAATAATAAAATCCACGATG+GGG - chr8.3:8120312-8120331 None:intergenic 25.0%
! AAGATGATGTAGTTGAAATA+TGG + chr8.3:8120871-8120890 MS.gene036557:CDS 25.0%
! AATCAGAGAAGTTCATATAA+GGG - chr8.3:8120626-8120645 None:intergenic 25.0%
! ACAAAAAGTGGTGATATTAT+TGG + chr8.3:8120990-8121009 MS.gene036557:CDS 25.0%
! AGATGATGTAGTTGAAATAT+GGG + chr8.3:8120872-8120891 MS.gene036557:CDS 25.0%
! CAAAATGTGAATTTGCAAAA+TGG - chr8.3:8120140-8120159 None:intergenic 25.0%
! CATATAGATGAATGAAATGA+TGG - chr8.3:8120464-8120483 None:intergenic 25.0%
! CATCATTTCATTCATCTATA+TGG + chr8.3:8120462-8120481 MS.gene036557:CDS 25.0%
! TAATCAGAGAAGTTCATATA+AGG - chr8.3:8120627-8120646 None:intergenic 25.0%
!! TCATTCATCTATATGGTTTT+GGG + chr8.3:8120469-8120488 MS.gene036557:CDS 25.0%
!! TTCATTCATCTATATGGTTT+TGG + chr8.3:8120468-8120487 MS.gene036557:CDS 25.0%
!! TTGCCTTTGATTTAATTGAA+AGG + chr8.3:8120724-8120743 MS.gene036557:CDS 25.0%
AAACTAAACGTTCATGTAGA+GGG + chr8.3:8120337-8120356 MS.gene036557:CDS 30.0%
CCAATATGTTGTACAAAAAG+TGG + chr8.3:8120978-8120997 MS.gene036557:CDS 30.0%
TATTTGTTTGTGAACTCTAG+TGG - chr8.3:8120409-8120428 None:intergenic 30.0%
TCAAGTGTGTTTGTAAGTTA+TGG + chr8.3:8120094-8120113 MS.gene036557:intron 30.0%
TGTGCAATTCTCTTTATAGT+AGG - chr8.3:8121078-8121097 None:intergenic 30.0%
!!! CCACTTTTTGTACAACATAT+TGG - chr8.3:8120981-8121000 None:intergenic 30.0%
AAACGTAAAAGAGACATCAC+CGG - chr8.3:8120075-8120094 None:intergenic 35.0%
AACCTACAGATTGTGATTTG+TGG + chr8.3:8120814-8120833 MS.gene036557:CDS 35.0%
ACACGTAAATTGGAACCATA+AGG - chr8.3:8120441-8120460 None:intergenic 35.0%
ACCATATAATCATCTGCTGA+CGG - chr8.3:8120501-8120520 None:intergenic 35.0%
ATAGGTAAAATTGTGTGCCA+CGG - chr8.3:8120377-8120396 None:intergenic 35.0%
ATCAATCGAGTTTCAAGATC+TGG - chr8.3:8120207-8120226 None:intergenic 35.0%
ATTGGAGAGAAGTAATGAGT+GGG - chr8.3:8120963-8120982 None:intergenic 35.0%
CAAACTAAACGTTCATGTAG+AGG + chr8.3:8120336-8120355 MS.gene036557:CDS 35.0%
CAAATACCTTTGTCTCCTTA+TGG + chr8.3:8120423-8120442 MS.gene036557:CDS 35.0%
GAACTTCTCTGATTATTCCA+TGG + chr8.3:8120632-8120651 MS.gene036557:CDS 35.0%
GCAATTCTCTTTATAGTAGG+AGG - chr8.3:8121075-8121094 None:intergenic 35.0%
GGTGATATTATTGGAACTGA+TGG + chr8.3:8120999-8121018 MS.gene036557:CDS 35.0%
TATTGGAGAGAAGTAATGAG+TGG - chr8.3:8120964-8120983 None:intergenic 35.0%
TCTCTGATTATTCCATGGTA+GGG + chr8.3:8120637-8120656 MS.gene036557:CDS 35.0%
TTCTCTGATTATTCCATGGT+AGG + chr8.3:8120636-8120655 MS.gene036557:CDS 35.0%
TTGGTGAAGTACGATGAAAA+AGG + chr8.3:8121032-8121051 MS.gene036557:CDS 35.0%
! ACCTACAGATTGTGATTTGT+GGG + chr8.3:8120815-8120834 MS.gene036557:CDS 35.0%
! GATTGTGATTTGTGGGTATT+TGG + chr8.3:8120822-8120841 MS.gene036557:CDS 35.0%
!! GAAATGATGGACACGTAAAT+TGG - chr8.3:8120451-8120470 None:intergenic 35.0%
!!! CTTTGCCAGATGATCTTTTT+TGG + chr8.3:8120763-8120782 MS.gene036557:CDS 35.0%
ACCCACAAATCACAATCTGT+AGG - chr8.3:8120819-8120838 None:intergenic 40.0%
ACTCTGTATACATAGCCACT+CGG - chr8.3:8121103-8121122 None:intergenic 40.0%
ATGGTAGGGTCACTCTTTAA+TGG + chr8.3:8120651-8120670 MS.gene036557:CDS 40.0%
ATTAAAGAGTGACCCTACCA+TGG - chr8.3:8120652-8120671 None:intergenic 40.0%
ATTGGGATAAGCAAGTCATG+AGG - chr8.3:8120039-8120058 None:intergenic 40.0%
CAGAGAAGTTCATATAAGGG+AGG - chr8.3:8120623-8120642 None:intergenic 40.0%
CCATATAATCATCTGCTGAC+GGG - chr8.3:8120500-8120519 None:intergenic 40.0%
CCTCTCCAAAAAAGATCATC+TGG - chr8.3:8120771-8120790 None:intergenic 40.0%
GTCAGCAGATGATTATATGG+TGG + chr8.3:8120500-8120519 MS.gene036557:CDS 40.0%
TCTTTAATGGGGCTATTCAC+TGG + chr8.3:8120664-8120683 MS.gene036557:CDS 40.0%
TGCTTATCCCAATTCTGTTG+AGG + chr8.3:8120046-8120065 MS.gene036557:CDS 40.0%
TGGTAGGGTCACTCTTTAAT+GGG + chr8.3:8120652-8120671 MS.gene036557:CDS 40.0%
TGTTTGTGAACTCTAGTGGA+TGG - chr8.3:8120405-8120424 None:intergenic 40.0%
TTGGAACCATAAGGAGACAA+AGG - chr8.3:8120432-8120451 None:intergenic 40.0%
TTGGTGAGTTTCTCAGTGTA+TGG + chr8.3:8120841-8120860 MS.gene036557:CDS 40.0%
! AACTGATGGTGAAGTTGGAT+TGG + chr8.3:8121013-8121032 MS.gene036557:CDS 40.0%
! ATTGGAACTGATGGTGAAGT+TGG + chr8.3:8121008-8121027 MS.gene036557:CDS 40.0%
! GTGGCACACAATTTTACCTA+TGG + chr8.3:8120376-8120395 MS.gene036557:CDS 40.0%
!!! CCAGATGATCTTTTTTGGAG+AGG + chr8.3:8120768-8120787 MS.gene036557:CDS 40.0%
AGCAAGTCATGAGGCAGATA+CGG - chr8.3:8120030-8120049 None:intergenic 45.0%
AGTACAAAGTGCATTCGTCG+TGG + chr8.3:8120904-8120923 MS.gene036557:CDS 45.0%
CCCGTCAGCAGATGATTATA+TGG + chr8.3:8120497-8120516 MS.gene036557:CDS 45.0%
CTCTGTATACATAGCCACTC+GGG - chr8.3:8121102-8121121 None:intergenic 45.0%
GGTAGGGTCACTCTTTAATG+GGG + chr8.3:8120653-8120672 MS.gene036557:CDS 45.0%
GGTTCATGTTCAAGATCACC+TGG - chr8.3:8120798-8120817 None:intergenic 45.0%
TAAAATCCACGATGGGGATG+CGG - chr8.3:8120306-8120325 None:intergenic 45.0%
TAATGGGGCTATTCACTGGT+TGG + chr8.3:8120668-8120687 MS.gene036557:CDS 45.0%
! CTCTAGTGGATGGATTCCAT+AGG - chr8.3:8120395-8120414 None:intergenic 45.0%
! GGGTTTATACTTTTGCACCG+TGG + chr8.3:8120357-8120376 MS.gene036557:CDS 45.0%
!! AATTCTAGGACTGTGTGCAG+TGG - chr8.3:8120169-8120188 None:intergenic 45.0%
!!! CTTTTTTGGAGAGGTTTGCC+AGG + chr8.3:8120777-8120796 MS.gene036557:CDS 45.0%
AAGTCATGAGGCAGATACGG+TGG - chr8.3:8120027-8120046 None:intergenic 50.0%
ACCGGCAACCTCAACAGAAT+TGG - chr8.3:8120057-8120076 None:intergenic 50.0%
AGAGAATTGCACATCCCGAG+TGG + chr8.3:8121085-8121104 MS.gene036557:CDS 50.0%
AGTCTTTGCATTCACTCCCC+CGG + chr8.3:8121120-8121139 MS.gene036557:CDS 50.0%
CCCAATTCTGTTGAGGTTGC+CGG + chr8.3:8120053-8120072 MS.gene036557:CDS 50.0%
CCGGCAACCTCAACAGAATT+GGG - chr8.3:8120056-8120075 None:intergenic 50.0%
GAGGTGGACGCACAAAACTA+AGG - chr8.3:8120278-8120297 None:intergenic 50.0%
CCACGATGGGGATGCGGATC+AGG - chr8.3:8120300-8120319 None:intergenic 65.0%
CCTGATCCGCATCCCCATCG+TGG + chr8.3:8120297-8120316 MS.gene036557:CDS 65.0%
CGATGGGGATGCGGATCAGG+AGG - chr8.3:8120297-8120316 None:intergenic 65.0%
TGGGGATGCGGATCAGGAGG+TGG - chr8.3:8120294-8120313 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 8120012 8121145 8120012 ID=MS.gene036557
chr8.3 mRNA 8120012 8121145 8120012 ID=MS.gene036557.t1;Parent=MS.gene036557
chr8.3 exon 8120012 8120105 8120012 ID=MS.gene036557.t1.exon1;Parent=MS.gene036557.t1
chr8.3 CDS 8120012 8120105 8120012 ID=cds.MS.gene036557.t1;Parent=MS.gene036557.t1
chr8.3 exon 8120208 8121145 8120208 ID=MS.gene036557.t1.exon2;Parent=MS.gene036557.t1
chr8.3 CDS 8120208 8121145 8120208 ID=cds.MS.gene036557.t1;Parent=MS.gene036557.t1
Gene Sequence

>MS.gene036557

ATGGAGAAGAAACCACCGTATCTGCCTCATGACTTGCTTATCCCAATTCTGTTGAGGTTGCCGGTGATGTCTCTTTTACGTTTCAAGTGTGTTTGTAAGTTATGGTTTTCTCTAATCTCTCAAACCCATTTTGCAAATTCACATTTTGAAATTACCACTGCACACAGTCCTAGAATTTTGTTCATATCAAATCCAGATCTTGAAACTCGATTGATTGATTTTGAAGCATCGCTTAGCGATTATTATACTTCTACTTCACTGAACCTTAGTTTTGTGCGTCCACCTCCTGATCCGCATCCCCATCGTGGATTTTATTATTTTATTCAAACTAAACGTTCATGTAGAGGGTTTATACTTTTGCACCGTGGCACACAATTTTACCTATGGAATCCATCCACTAGAGTTCACAAACAAATACCTTTGTCTCCTTATGGTTCCAATTTACGTGTCCATCATTTCATTCATCTATATGGTTTTGGGTATGACCCGTCAGCAGATGATTATATGGTGGTTGTTATGTCATTTGACGCAGACTTTCATAATTTTTCATCACATTTGGAAATTTTCTCATTAAGAGATAATGTATTGAAAGAAATTAAGGGTACTTACCTCCCTTATATGAACTTCTCTGATTATTCCATGGTAGGGTCACTCTTTAATGGGGCTATTCACTGGTTGGCTTTTCATCTTGATTTATCAATGAATGTTATTGTTGCCTTTGATTTAATTGAAAGGAAACTTTTAGACATATCTTTGCCAGATGATCTTTTTTGGAGAGGTTTGCCAGGTGATCTTGAACATGAACCTACAGATTGTGATTTGTGGGTATTTGGTGAGTTTCTCAGTGTATGGACTAAGCAAGATGATGTAGTTGAAATATGGGTGATGAAAGAGTACAAAGTGCATTCGTCGTGGACTAAGACTCTTGTTTTTTCTATTGATGTCATTCCCACTCATTACTTCTCTCCAATATGTTGTACAAAAAGTGGTGATATTATTGGAACTGATGGTGAAGTTGGATTGGTGAAGTACGATGAAAAAGGACAGTTTCTAGAGTATACCTCCTACTATAAAGAGAATTGCACATCCCGAGTGGCTATGTATACAGAGTCTTTGCATTCACTCCCCCGGTGA

Protein sequence

>MS.gene036557.t1

MEKKPPYLPHDLLIPILLRLPVMSLLRFKCVYLETRLIDFEASLSDYYTSTSLNLSFVRPPPDPHPHRGFYYFIQTKRSCRGFILLHRGTQFYLWNPSTRVHKQIPLSPYGSNLRVHHFIHLYGFGYDPSADDYMVVVMSFDADFHNFSSHLEIFSLRDNVLKEIKGTYLPYMNFSDYSMVGSLFNGAIHWLAFHLDLSMNVIVAFDLIERKLLDISLPDDLFWRGLPGDLEHEPTDCDLWVFGEFLSVWTKQDDVVEIWVMKEYKVHSSWTKTLVFSIDVIPTHYFSPICCTKSGDIIGTDGEVGLVKYDEKGQFLEYTSYYKENCTSRVAMYTESLHSLPR