AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036760.t1 MTR_4g114700 58.077 260 38 3 35 266 2 218 2.49e-93 275
MS.gene036760.t1 MTR_4g116330 51.613 248 88 7 57 275 136 380 1.07e-71 225
MS.gene036760.t1 MTR_4g117720 48.659 261 95 6 52 275 120 378 1.23e-70 222
MS.gene036760.t1 MTR_3g103020 49.808 261 90 8 51 275 123 378 1.35e-68 217
MS.gene036760.t1 MTR_6g060650 49.004 251 90 5 57 274 127 372 4.28e-67 213
MS.gene036760.t1 MTR_4g109280 47.619 252 99 5 54 275 111 359 4.47e-65 207
MS.gene036760.t1 MTR_4g117850 46.850 254 97 8 53 272 127 376 7.22e-63 202
MS.gene036760.t1 MTR_4g109270 46.614 251 99 6 55 275 119 364 5.30e-62 199
MS.gene036760.t1 MTR_3g034180 45.660 265 99 9 51 274 228 488 1.13e-60 199
MS.gene036760.t1 MTR_4g116320 55.897 195 73 6 87 273 67 256 1.95e-60 192
MS.gene036760.t1 MTR_8g040935 50.739 203 84 5 85 275 10 208 1.58e-59 188
MS.gene036760.t1 MTR_4g023380 45.211 261 93 7 57 275 127 379 3.41e-59 193
MS.gene036760.t1 MTR_4g021785 45.902 244 100 7 57 275 119 355 8.51e-57 186
MS.gene036760.t1 MTR_4g023130 45.868 242 96 8 57 272 78 310 1.49e-55 181
MS.gene036760.t1 MTR_3g034160 43.019 265 106 6 51 274 114 374 3.77e-55 182
MS.gene036760.t1 MTR_3g034130 44.715 246 91 7 57 261 121 362 5.94e-55 181
MS.gene036760.t1 MTR_4g094365 46.275 255 93 10 57 275 118 364 1.73e-54 180
MS.gene036760.t1 MTR_4g118380 44.492 236 87 5 52 245 124 357 1.94e-54 180
MS.gene036760.t1 MTR_4g023090 42.697 267 96 9 57 274 127 385 2.32e-54 181
MS.gene036760.t1 MTR_4g023080 45.041 242 98 8 57 272 119 351 8.97e-54 178
MS.gene036760.t1 MTR_4g118370 43.154 241 96 7 57 272 33 257 3.45e-53 174
MS.gene036760.t1 MTR_1g055175 48.020 202 91 7 84 275 4 201 2.59e-51 167
MS.gene036760.t1 MTR_4g117870 42.623 244 81 7 57 275 58 267 7.99e-51 168
MS.gene036760.t1 MTR_8g433040 43.373 249 101 8 57 275 126 364 8.27e-51 171
MS.gene036760.t1 MTR_8g032380 43.373 249 101 8 57 275 126 364 8.27e-51 171
MS.gene036760.t1 MTR_4g118400 43.443 244 102 8 42 269 71 294 1.29e-50 168
MS.gene036760.t1 MTR_1g055165 43.404 235 87 7 53 275 118 318 2.68e-50 168
MS.gene036760.t1 MTR_4g122850 43.969 257 99 13 58 275 114 364 3.89e-50 169
MS.gene036760.t1 MTR_4g116330 44.628 242 75 7 57 275 136 341 1.39e-49 167
MS.gene036760.t1 MTR_4g023070 43.182 264 93 9 57 272 113 367 1.93e-49 167
MS.gene036760.t1 MTR_1g055195 43.496 246 107 9 57 275 238 478 2.03e-49 170
MS.gene036760.t1 MTR_5g097210 41.961 255 111 10 51 273 112 361 3.55e-49 167
MS.gene036760.t1 MTR_4g117770 42.126 254 110 8 55 275 118 367 5.08e-49 166
MS.gene036760.t1 MTR_4g117810 42.126 254 110 8 55 275 118 367 5.08e-49 166
MS.gene036760.t1 MTR_4g117780 41.961 255 111 7 54 275 117 367 8.94e-49 166
MS.gene036760.t1 MTR_8g032390 44.444 252 94 12 57 270 127 370 5.10e-48 164
MS.gene036760.t1 MTR_4g023200 42.683 246 103 10 57 272 120 357 1.86e-47 162
MS.gene036760.t1 MTR_8g433030 50.769 195 77 8 87 270 151 337 2.25e-47 161
MS.gene036760.t1 MTR_4g023190 42.276 246 103 9 57 272 120 356 2.90e-47 161
MS.gene036760.t1 MTR_4g023150 42.276 246 104 9 57 272 120 357 3.20e-47 161
MS.gene036760.t1 MTR_4g023120 41.825 263 98 8 57 272 113 367 1.13e-46 160
MS.gene036760.t1 MTR_1g055135 40.909 264 112 11 51 275 117 375 1.26e-45 157
MS.gene036760.t1 MTR_4g023440 41.667 240 82 7 57 275 130 332 4.82e-45 155
MS.gene036760.t1 MTR_5g070130 41.729 266 111 11 51 275 115 377 1.67e-44 155
MS.gene036760.t1 MTR_5g070080 43.359 256 104 9 55 275 137 386 2.41e-44 154
MS.gene036760.t1 MTR_4g117750 40.769 260 110 9 51 271 101 355 5.51e-44 155
MS.gene036760.t1 MTR_4g117750 50.000 134 54 4 148 271 349 479 4.27e-32 123
MS.gene036760.t1 MTR_8g102520 41.016 256 109 9 56 275 73 322 2.17e-43 150
MS.gene036760.t1 MTR_6g463430 44.500 200 93 6 82 272 9 199 9.71e-42 142
MS.gene036760.t1 MTR_5g070088 40.316 253 110 8 54 270 133 380 2.01e-40 144
MS.gene036760.t1 MTR_7g079400 40.698 258 109 10 57 275 85 337 3.37e-40 142
MS.gene036760.t1 MTR_1g055250 43.605 172 86 5 81 243 70 239 1.31e-37 135
MS.gene036760.t1 MTR_7g079370 38.224 259 111 10 56 269 96 350 4.80e-36 132
MS.gene036760.t1 MTR_4g118360 52.713 129 56 3 149 275 1 126 6.31e-36 125
MS.gene036760.t1 MTR_4g117530 40.957 188 79 4 89 275 97 253 2.22e-34 125
MS.gene036760.t1 MTR_4g121580 36.475 244 95 10 54 265 124 339 1.16e-31 120
MS.gene036760.t1 MTR_7g079420 38.655 238 124 10 52 275 915 1144 3.11e-31 122
MS.gene036760.t1 MTR_5g023000 59.794 97 34 2 180 275 7 99 8.73e-30 108
MS.gene036760.t1 MTR_4g122860 41.270 189 79 8 94 275 157 320 2.11e-29 114
MS.gene036760.t1 MTR_8g098830 43.030 165 77 6 89 241 35 194 4.27e-28 108
MS.gene036760.t1 MTR_7g079450 45.000 140 71 3 136 275 4 137 1.64e-25 98.6
MS.gene036760.t1 MTR_2g048580 31.818 242 125 9 57 275 118 342 3.82e-23 97.1
MS.gene036760.t1 MTR_8g013010 40.909 154 52 5 58 178 167 314 3.24e-20 88.6
MS.gene036760.t1 MTR_7g117720 56.322 87 37 1 185 270 186 272 7.84e-20 87.0
MS.gene036760.t1 MTR_4g117430 39.583 144 60 5 57 176 15 155 2.78e-19 82.8
MS.gene036760.t1 MTR_4g023430 48.148 81 42 0 195 275 142 222 2.72e-18 81.6
MS.gene036760.t1 MTR_4g122840 39.568 139 43 5 140 275 164 264 4.02e-17 79.3
MS.gene036760.t1 MTR_4g116340 38.095 126 42 5 54 149 128 247 6.12e-15 72.8
MS.gene036760.t1 MTR_8g013005 54.839 62 25 1 214 275 1 59 9.06e-14 65.1
MS.gene036760.t1 MTR_3g010970 28.571 161 95 5 54 201 167 320 9.13e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 74 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGTAGGGTTGGTCTTTAA+TGG 0.230123 8.1:-11799978 MS.gene036760:CDS
GGTACTTGATATCAGGAAAA+TGG 0.231212 8.1:+11800018 None:intergenic
TTCTAGAGCATGACTCATTA+TGG 0.262944 8.1:-11799614 MS.gene036760:CDS
TTAGATGAAGTAATGTATTC+AGG 0.273296 8.1:-11800092 MS.gene036760:intron
TTAGAGAATACTTTAGTCTA+TGG 0.289287 8.1:-11799833 MS.gene036760:CDS
ATTCTGTATACACCGCAAAT+TGG 0.290281 8.1:+11799565 None:intergenic
CGAGTATGGTCAAAATCATT+TGG 0.326790 8.1:+11799879 None:intergenic
TCTTTAATGGGTCTATTCAT+TGG 0.374417 8.1:-11799965 MS.gene036760:CDS
GAGTAGGGTTGGTCTTTAAT+GGG 0.380532 8.1:-11799977 MS.gene036760:CDS
GATGATCCATTACTTTCAAC+TGG 0.401175 8.1:-11799591 MS.gene036760:CDS
TACTTTAGTCTATGGGCTAT+GGG 0.407162 8.1:-11799825 MS.gene036760:CDS
TTCTGTATACACCGCAAATT+GGG 0.414284 8.1:+11799566 None:intergenic
GTCTTTCAAGCTACTACATA+TGG 0.414794 8.1:-11800262 MS.gene036760:intron
TTGGGACGGTACTTGATATC+AGG 0.417403 8.1:+11800011 None:intergenic
TTAGGCTTGCATGTTGTCAC+CGG 0.436965 8.1:+11799527 None:intergenic
TGACACCCCATGATCTTCCT+TGG 0.437832 8.1:+11801081 None:intergenic
CTCTTGATGTCATCCCCTCT+CGG 0.442138 8.1:-11799728 MS.gene036760:CDS
GGTATCATACACTTGAGATA+TGG 0.444256 8.1:-11799803 MS.gene036760:CDS
GTTGGAAGAGATGACAAAAC+TGG 0.445047 8.1:-11799666 MS.gene036760:CDS
TCTAGAGCATGACTCATTAT+GGG 0.456461 8.1:-11799613 MS.gene036760:CDS
TAGAGAATACTTTAGTCTAT+GGG 0.461181 8.1:-11799832 MS.gene036760:CDS
AATACAAAGTACAATCATCT+TGG 0.466827 8.1:-11799770 MS.gene036760:CDS
GTACTTGATATCAGGAAAAT+GGG 0.474629 8.1:+11800019 None:intergenic
TCAAGGAGGTGCCGGAGGGT+TGG 0.484786 8.1:-11801061 MS.gene036760:CDS
GAGGGTTGGAAGCAAGAAGA+TGG 0.485417 8.1:-11801047 MS.gene036760:CDS
CTTAATGAATCACATGGCTA+TGG 0.485728 8.1:-11800200 MS.gene036760:CDS
ATACTTTAGTCTATGGGCTA+TGG 0.486084 8.1:-11799826 MS.gene036760:CDS
GAATCTTTGCTTTCACTCCC+CGG 0.486445 8.1:-11799546 MS.gene036760:CDS
TTCAACTGGATCCCAATTTG+CGG 0.489142 8.1:-11799577 MS.gene036760:CDS
TGAAGTAATGTATTCAGGAT+TGG 0.492895 8.1:-11800087 MS.gene036760:CDS
ATGGGGTGTCAAGGAGGTGC+CGG 0.493620 8.1:-11801069 MS.gene036760:CDS
ATGTTCACCAAGGAAGATCA+TGG 0.494986 8.1:-11801088 MS.gene036760:CDS
TCTCATTGAGAGATAATATG+TGG 0.495202 8.1:-11800058 MS.gene036760:CDS
GGGTGTCAAGGAGGTGCCGG+AGG 0.495293 8.1:-11801066 MS.gene036760:CDS
TGGTCAAAATCATTTGGAAA+AGG 0.506509 8.1:+11799885 None:intergenic
TGTCTCTCAACTCCGGTGGA+TGG 0.512165 8.1:+11800236 None:intergenic
CCCTACTCTAGGCTCAGGAT+TGG 0.512525 8.1:+11799992 None:intergenic
CAAAGAATCTTCAAAAGTGA+AGG 0.515258 8.1:-11801018 MS.gene036760:CDS
ACCAACCCTACTCTAGGCTC+AGG 0.522644 8.1:+11799987 None:intergenic
CCTACTCTAGGCTCAGGATT+GGG 0.526604 8.1:+11799993 None:intergenic
TAGGCTTGCATGTTGTCACC+GGG 0.528934 8.1:+11799528 None:intergenic
TGGGATCCAGTTGAAAGTAA+TGG 0.537735 8.1:+11799585 None:intergenic
TCCTGAGCCTAGAGTAGGGT+TGG 0.540414 8.1:-11799988 MS.gene036760:CDS
TCTTCTTGCTTCCAACCCTC+CGG 0.565135 8.1:+11801050 None:intergenic
AGGAAGATCATGGGGTGTCA+AGG 0.568960 8.1:-11801078 MS.gene036760:CDS
TTAAAGACCAACCCTACTCT+AGG 0.572534 8.1:+11799981 None:intergenic
TGTTCACCAAGGAAGATCAT+GGG 0.573005 8.1:-11801087 MS.gene036760:CDS
CCAATCCTGAGCCTAGAGTA+GGG 0.576939 8.1:-11799992 MS.gene036760:CDS
ATTGGGATAAAGTGCCGAGA+GGG 0.579058 8.1:+11799714 None:intergenic
AGGGTTGGAAGCAAGAAGAT+GGG 0.579881 8.1:-11801046 MS.gene036760:CDS
GGTGTCAAGGAGGTGCCGGA+GGG 0.580378 8.1:-11801065 MS.gene036760:CDS
CCCAATCCTGAGCCTAGAGT+AGG 0.582388 8.1:-11799993 MS.gene036760:CDS
AAAGAATCTTCAAAAGTGAA+GGG 0.583335 8.1:-11801017 MS.gene036760:CDS
CTCTCTCTTAATGAATCACA+TGG 0.600310 8.1:-11800206 MS.gene036760:CDS
TAATATGTGGCATGTAATCG+AGG 0.602408 8.1:-11800045 MS.gene036760:CDS
AAAAGTGAAGGGATGAAGTG+TGG 0.604843 8.1:-11801006 MS.gene036760:CDS
ATGCTGAAGTATAATTACAA+AGG 0.616769 8.1:-11799642 MS.gene036760:CDS
AAGCATGATGAGGACACGTA+GGG 0.618420 8.1:+11801128 None:intergenic
AGGTATTTGTCTCTCAACTC+CGG 0.624445 8.1:+11800229 None:intergenic
TGTGATTCATTAAGAGAGAG+AGG 0.625850 8.1:+11800209 None:intergenic
AAAGTGAAGGGATGAAGTGT+GGG 0.627402 8.1:-11801005 MS.gene036760:CDS
TATTTGTCTCTCAACTCCGG+TGG 0.628228 8.1:+11800232 None:intergenic
TACATATGGAATCCATCCAC+CGG 0.631502 8.1:-11800248 MS.gene036760:CDS
CAAGCATGATGAGGACACGT+AGG 0.640748 8.1:+11801127 None:intergenic
AATATGTGGCATGTAATCGA+GGG 0.644013 8.1:-11800044 MS.gene036760:CDS
CTCTAGGCTCAGGATTGGGA+CGG 0.645228 8.1:+11799997 None:intergenic
TCAATTCATCAAGCATGATG+AGG 0.651259 8.1:+11801118 None:intergenic
ACTTTAGTCTATGGGCTATG+GGG 0.654644 8.1:-11799824 MS.gene036760:CDS
TTGGGATAAAGTGCCGAGAG+GGG 0.664166 8.1:+11799715 None:intergenic
AAGATCATGGGGTGTCAAGG+AGG 0.665305 8.1:-11801075 MS.gene036760:CDS
GTTCACCAAGGAAGATCATG+GGG 0.673431 8.1:-11801086 MS.gene036760:CDS
TGACGCATTCATGTTCACCA+AGG 0.700544 8.1:-11801098 MS.gene036760:CDS
AGGCTTGCATGTTGTCACCG+GGG 0.724966 8.1:+11799529 None:intergenic
TATTGGGATAAAGTGCCGAG+AGG 0.743389 8.1:+11799713 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAACCTTTTACTTTTT+AGG + chr8.1:11799882-11799901 None:intergenic 15.0%
!!! ATTTAACCTTTTACTTTTTA+GGG + chr8.1:11799881-11799900 None:intergenic 15.0%
!! AAAATTATAAGTTCATGTAG+AGG - chr8.1:11800369-11800388 MS.gene036760:intron 20.0%
!! AAGAAAGATGTTTAGTAAAA+TGG - chr8.1:11799842-11799861 MS.gene036760:CDS 20.0%
!! AATACGTATTTATATGGATT+TGG - chr8.1:11800501-11800520 MS.gene036760:intron 20.0%
!! AATCGTAATACGTATTTATA+TGG - chr8.1:11800495-11800514 MS.gene036760:intron 20.0%
!! ATACGTATTTATATGGATTT+GGG - chr8.1:11800502-11800521 MS.gene036760:intron 20.0%
!! ATGTTTAGTAAAATGGTTTA+TGG - chr8.1:11799849-11799868 MS.gene036760:CDS 20.0%
!! TGAATTAAAAGATGATTACT+TGG - chr8.1:11800530-11800549 MS.gene036760:intron 20.0%
!!! ACTTATTTTCATGTCAAATA+TGG - chr8.1:11800236-11800255 MS.gene036760:CDS 20.0%
!!! TAATATAACAACCAGATTTT+GGG + chr8.1:11800350-11800369 None:intergenic 20.0%
!!! TTAATATAACAACCAGATTT+TGG + chr8.1:11800351-11800370 None:intergenic 20.0%
!!! TTACTAAACATCTTTCTTTT+GGG + chr8.1:11799840-11799859 None:intergenic 20.0%
!!! TTTACTAAACATCTTTCTTT+TGG + chr8.1:11799841-11799860 None:intergenic 20.0%
! AAAACACCCTAAAAAGTAAA+AGG - chr8.1:11799872-11799891 MS.gene036760:CDS 25.0%
! AAAGAATCTTCAAAAGTGAA+GGG - chr8.1:11799654-11799673 MS.gene036760:CDS 25.0%
! AATACAAAGTACAATCATCT+TGG - chr8.1:11800901-11800920 MS.gene036760:intron 25.0%
! ATGCTGAAGTATAATTACAA+AGG - chr8.1:11801029-11801048 MS.gene036760:CDS 25.0%
! ATTAAAAGATGATTACTTGG+TGG - chr8.1:11800533-11800552 MS.gene036760:intron 25.0%
! ATTAAGATGATCAATTCATG+AGG + chr8.1:11800084-11800103 None:intergenic 25.0%
! TAGAGAATACTTTAGTCTAT+GGG - chr8.1:11800839-11800858 MS.gene036760:intron 25.0%
! TGATCATCTTAATCCTATTA+TGG - chr8.1:11800091-11800110 MS.gene036760:CDS 25.0%
! TTAGAGAATACTTTAGTCTA+TGG - chr8.1:11800838-11800857 MS.gene036760:intron 25.0%
! TTAGATGAAGTAATGTATTC+AGG - chr8.1:11800579-11800598 MS.gene036760:intron 25.0%
!! AATATAACAACCAGATTTTG+GGG + chr8.1:11800349-11800368 None:intergenic 25.0%
!!! CACTTTTTGTAGAACATATT+GGG + chr8.1:11800977-11800996 None:intergenic 25.0%
AAATGTGAATTAGCGAAACA+AGG + chr8.1:11800183-11800202 None:intergenic 30.0%
ATCACAATGTGATGAACTTT+AGG + chr8.1:11799971-11799990 None:intergenic 30.0%
CAAAGAATCTTCAAAAGTGA+AGG - chr8.1:11799653-11799672 MS.gene036760:CDS 30.0%
CCAATATGTTCTACAAAAAG+TGG - chr8.1:11800975-11800994 MS.gene036760:intron 30.0%
GAACTTTAGGTGATACAAAA+GGG + chr8.1:11799958-11799977 None:intergenic 30.0%
GTACTTGATATCAGGAAAAT+GGG + chr8.1:11800655-11800674 None:intergenic 30.0%
TCTCATTGAGAGATAATATG+TGG - chr8.1:11800613-11800632 MS.gene036760:intron 30.0%
TGAACTTTAGGTGATACAAA+AGG + chr8.1:11799959-11799978 None:intergenic 30.0%
TGAAGTAATGTATTCAGGAT+TGG - chr8.1:11800584-11800603 MS.gene036760:intron 30.0%
TGGTCAAAATCATTTGGAAA+AGG + chr8.1:11800789-11800808 None:intergenic 30.0%
! AATCACATTTTTCACGAGTA+TGG + chr8.1:11800809-11800828 None:intergenic 30.0%
! TCGTGAAAAATGTGATTTGT+GGG - chr8.1:11800812-11800831 MS.gene036760:intron 30.0%
! TCTTTAATGGGTCTATTCAT+TGG - chr8.1:11800706-11800725 MS.gene036760:intron 30.0%
!!! CCACTTTTTGTAGAACATAT+TGG + chr8.1:11800978-11800997 None:intergenic 30.0%
AAACGTATAAGAGACTTCAC+CGG + chr8.1:11800120-11800139 None:intergenic 35.0%
AATATGTGGCATGTAATCGA+GGG - chr8.1:11800627-11800646 MS.gene036760:intron 35.0%
ACAAAAAGTGGTGACATTGT+TGG - chr8.1:11800987-11801006 MS.gene036760:intron 35.0%
ATTCTGTATACACCGCAAAT+TGG + chr8.1:11801109-11801128 None:intergenic 35.0%
CGAGTATGGTCAAAATCATT+TGG + chr8.1:11800795-11800814 None:intergenic 35.0%
CTCGTGAAAAATGTGATTTG+TGG - chr8.1:11800811-11800830 MS.gene036760:intron 35.0%
CTCTCTCTTAATGAATCACA+TGG - chr8.1:11800465-11800484 MS.gene036760:intron 35.0%
CTTAATCCTATTATGGTTGC+CGG - chr8.1:11800098-11800117 MS.gene036760:intron 35.0%
CTTAATGAATCACATGGCTA+TGG - chr8.1:11800471-11800490 MS.gene036760:intron 35.0%
GATGATCCATTACTTTCAAC+TGG - chr8.1:11801080-11801099 MS.gene036760:CDS 35.0%
GGTACTTGATATCAGGAAAA+TGG + chr8.1:11800656-11800675 None:intergenic 35.0%
GGTATCATACACTTGAGATA+TGG - chr8.1:11800868-11800887 MS.gene036760:intron 35.0%
GTCTTTCAAGCTACTACATA+TGG - chr8.1:11800409-11800428 MS.gene036760:intron 35.0%
TAATATGTGGCATGTAATCG+AGG - chr8.1:11800626-11800645 MS.gene036760:intron 35.0%
TCAATTCATCAAGCATGATG+AGG + chr8.1:11799556-11799575 None:intergenic 35.0%
TGTGATTCATTAAGAGAGAG+AGG + chr8.1:11800465-11800484 None:intergenic 35.0%
TTAAACTCACAACACAGGAT+TGG + chr8.1:11799711-11799730 None:intergenic 35.0%
TTCTGTATACACCGCAAATT+GGG + chr8.1:11801108-11801127 None:intergenic 35.0%
! ATACTTTAGTCTATGGGCTA+TGG - chr8.1:11800845-11800864 MS.gene036760:intron 35.0%
! TACTTTAGTCTATGGGCTAT+GGG - chr8.1:11800846-11800865 MS.gene036760:intron 35.0%
! TCTAGAGCATGACTCATTAT+GGG - chr8.1:11801058-11801077 MS.gene036760:CDS 35.0%
!! AGTTTTATGACCCCAAAATC+TGG - chr8.1:11800336-11800355 MS.gene036760:intron 35.0%
!! TCAAGAGTGTTTGTAAGTCT+TGG - chr8.1:11800139-11800158 MS.gene036760:intron 35.0%
!! TTCTAGAGCATGACTCATTA+TGG - chr8.1:11801057-11801076 MS.gene036760:CDS 35.0%
!!! AGATTTTGGGGTCATAAAAC+TGG + chr8.1:11800337-11800356 None:intergenic 35.0%
!!! ATTTTGGGGTCATAAAACTG+GGG + chr8.1:11800335-11800354 None:intergenic 35.0%
!!! GATTTTGGGGTCATAAAACT+GGG + chr8.1:11800336-11800355 None:intergenic 35.0%
AAAAGTGAAGGGATGAAGTG+TGG - chr8.1:11799665-11799684 MS.gene036760:CDS 40.0%
AAAGTGAAGGGATGAAGTGT+GGG - chr8.1:11799666-11799685 MS.gene036760:CDS 40.0%
ACAAAAGGGCTAACATCCAT+CGG + chr8.1:11799944-11799963 None:intergenic 40.0%
AGGTATTTGTCTCTCAACTC+CGG + chr8.1:11800445-11800464 None:intergenic 40.0%
ATCTGATCTAATCAACCGTC+AGG + chr8.1:11799759-11799778 None:intergenic 40.0%
ATGTTCACCAAGGAAGATCA+TGG - chr8.1:11799583-11799602 MS.gene036760:CDS 40.0%
CCACTTTAAACTCACAACAC+AGG + chr8.1:11799716-11799735 None:intergenic 40.0%
CCTGTGTTGTGAGTTTAAAG+TGG - chr8.1:11799713-11799732 MS.gene036760:CDS 40.0%
CTAGAGAAGTTGAATCCTGA+CGG - chr8.1:11799741-11799760 MS.gene036760:CDS 40.0%
GGTCGGTATATATGTTGCAT+AGG + chr8.1:11800313-11800332 None:intergenic 40.0%
GTAGTATAAGCATAACCCGA+TGG - chr8.1:11799925-11799944 MS.gene036760:CDS 40.0%
GTTGGAAGAGATGACAAAAC+TGG - chr8.1:11801005-11801024 MS.gene036760:CDS 40.0%
TACATATGGAATCCATCCAC+CGG - chr8.1:11800423-11800442 MS.gene036760:intron 40.0%
TAGAGGAAAAATACGCATGG+AGG - chr8.1:11800038-11800057 MS.gene036760:CDS 40.0%
TCACAACACAGGATTGGAAA+GGG + chr8.1:11799705-11799724 None:intergenic 40.0%
TCGTAGAGGAAAAATACGCA+TGG - chr8.1:11800035-11800054 MS.gene036760:CDS 40.0%
TGACGGTTGATTAGATCAGA+TGG - chr8.1:11799758-11799777 MS.gene036760:CDS 40.0%
TGGGATCCAGTTGAAAGTAA+TGG + chr8.1:11801089-11801108 None:intergenic 40.0%
TGTTCACCAAGGAAGATCAT+GGG - chr8.1:11799584-11799603 MS.gene036760:CDS 40.0%
TTAAAGACCAACCCTACTCT+AGG + chr8.1:11800693-11800712 None:intergenic 40.0%
TTCAACTGGATCCCAATTTG+CGG - chr8.1:11801094-11801113 MS.gene036760:CDS 40.0%
! ACTTTAGTCTATGGGCTATG+GGG - chr8.1:11800847-11800866 MS.gene036760:intron 40.0%
! TTAGATCAGATGGCTCTGTT+TGG - chr8.1:11799768-11799787 MS.gene036760:CDS 40.0%
!! AGAGTAGGGTTGGTCTTTAA+TGG - chr8.1:11800693-11800712 MS.gene036760:intron 40.0%
!! GAGTAGGGTTGGTCTTTAAT+GGG - chr8.1:11800694-11800713 MS.gene036760:intron 40.0%
!!! TTTTGGGGTCATAAAACTGG+GGG + chr8.1:11800334-11800353 None:intergenic 40.0%
AAGCATGATGAGGACACGTA+GGG + chr8.1:11799546-11799565 None:intergenic 45.0%
ACAGTGATGTACAGTCGTAG+AGG - chr8.1:11800021-11800040 MS.gene036760:CDS 45.0%
ACTTCACCGGCAACCATAAT+AGG + chr8.1:11800107-11800126 None:intergenic 45.0%
AGGAAAAATACGCATGGAGG+AGG - chr8.1:11800041-11800060 MS.gene036760:CDS 45.0%
AGGGTTGGAAGCAAGAAGAT+GGG - chr8.1:11799625-11799644 MS.gene036760:CDS 45.0%
CAAAAGGGCTAACATCCATC+GGG + chr8.1:11799943-11799962 None:intergenic 45.0%
CGACTGTACATCACTGTTTC+AGG + chr8.1:11800018-11800037 None:intergenic 45.0%
CTCACAACACAGGATTGGAA+AGG + chr8.1:11799706-11799725 None:intergenic 45.0%
GAATCTTTGCTTTCACTCCC+CGG - chr8.1:11801125-11801144 MS.gene036760:CDS 45.0%
GTTCACCAAGGAAGATCATG+GGG - chr8.1:11799585-11799604 MS.gene036760:CDS 45.0%
TAGGCAGCATCATAGTCTAG+AGG + chr8.1:11800294-11800313 None:intergenic 45.0%
TATTTGTCTCTCAACTCCGG+TGG + chr8.1:11800442-11800461 None:intergenic 45.0%
TGACGCATTCATGTTCACCA+AGG - chr8.1:11799573-11799592 MS.gene036760:CDS 45.0%
TTAGGCTTGCATGTTGTCAC+CGG + chr8.1:11801147-11801166 None:intergenic 45.0%
TTGGGACGGTACTTGATATC+AGG + chr8.1:11800663-11800682 None:intergenic 45.0%
! TCGTCTGTGAGTGTGTGTTT+TGG + chr8.1:11800217-11800236 None:intergenic 45.0%
!! ATTGGGATAAAGTGCCGAGA+GGG + chr8.1:11800960-11800979 None:intergenic 45.0%
!! TATTGGGATAAAGTGCCGAG+AGG + chr8.1:11800961-11800980 None:intergenic 45.0%
CAAGCATGATGAGGACACGT+AGG + chr8.1:11799547-11799566 None:intergenic 50.0%
CCAATCCTGAGCCTAGAGTA+GGG - chr8.1:11800679-11800698 MS.gene036760:intron 50.0%
CCTACTCTAGGCTCAGGATT+GGG + chr8.1:11800681-11800700 None:intergenic 50.0%
CTCTTGATGTCATCCCCTCT+CGG - chr8.1:11800943-11800962 MS.gene036760:intron 50.0%
GAGGGTTGGAAGCAAGAAGA+TGG - chr8.1:11799624-11799643 MS.gene036760:CDS 50.0%
TAGGCTTGCATGTTGTCACC+GGG + chr8.1:11801146-11801165 None:intergenic 50.0%
TCTTCTTGCTTCCAACCCTC+CGG + chr8.1:11799624-11799643 None:intergenic 50.0%
TGACACCCCATGATCTTCCT+TGG + chr8.1:11799593-11799612 None:intergenic 50.0%
! AAGATCATGGGGTGTCAAGG+AGG - chr8.1:11799596-11799615 MS.gene036760:CDS 50.0%
! AGGAAGATCATGGGGTGTCA+AGG - chr8.1:11799593-11799612 MS.gene036760:CDS 50.0%
!! TTGGGATAAAGTGCCGAGAG+GGG + chr8.1:11800959-11800978 None:intergenic 50.0%
ACCAACCCTACTCTAGGCTC+AGG + chr8.1:11800687-11800706 None:intergenic 55.0%
AGGCTTGCATGTTGTCACCG+GGG + chr8.1:11801145-11801164 None:intergenic 55.0%
CCCAATCCTGAGCCTAGAGT+AGG - chr8.1:11800678-11800697 MS.gene036760:intron 55.0%
CCCTACTCTAGGCTCAGGAT+TGG + chr8.1:11800682-11800701 None:intergenic 55.0%
CTCTAGGCTCAGGATTGGGA+CGG + chr8.1:11800677-11800696 None:intergenic 55.0%
GGGGTCATAAAACTGGGGGT+CGG + chr8.1:11800330-11800349 None:intergenic 55.0%
TCCTGAGCCTAGAGTAGGGT+TGG - chr8.1:11800683-11800702 MS.gene036760:intron 55.0%
TGTCTCTCAACTCCGGTGGA+TGG + chr8.1:11800438-11800457 None:intergenic 55.0%
! ATGGGGTGTCAAGGAGGTGC+CGG - chr8.1:11799602-11799621 MS.gene036760:CDS 60.0%
!! GGTGTCAAGGAGGTGCCGGA+GGG - chr8.1:11799606-11799625 MS.gene036760:CDS 65.0%
!! TCAAGGAGGTGCCGGAGGGT+TGG - chr8.1:11799610-11799629 MS.gene036760:CDS 65.0%
!! GGGTGTCAAGGAGGTGCCGG+AGG - chr8.1:11799605-11799624 MS.gene036760:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 11799527 11801166 11799527 ID=MS.gene036760
chr8.1 mRNA 11799527 11801166 11799527 ID=MS.gene036760.t1;Parent=MS.gene036760
chr8.1 exon 11801003 11801166 11801003 ID=MS.gene036760.t1.exon1;Parent=MS.gene036760.t1
chr8.1 CDS 11801003 11801166 11801003 ID=cds.MS.gene036760.t1;Parent=MS.gene036760.t1
chr8.1 exon 11800195 11800274 11800195 ID=MS.gene036760.t1.exon2;Parent=MS.gene036760.t1
chr8.1 CDS 11800195 11800274 11800195 ID=cds.MS.gene036760.t1;Parent=MS.gene036760.t1
chr8.1 exon 11799527 11800110 11799527 ID=MS.gene036760.t1.exon3;Parent=MS.gene036760.t1
chr8.1 CDS 11799527 11800110 11799527 ID=cds.MS.gene036760.t1;Parent=MS.gene036760.t1
Gene Sequence

>MS.gene036760

ATGGTGTTGTGTGTCTCCCTACGTGTCCTCATCATGCTTGATGAATTGACGCATTCATGTTCACCAAGGAAGATCATGGGGTGTCAAGGAGGTGCCGGAGGGTTGGAAGCAAGAAGATGGGAGAAGCAAAGAATCTTCAAAAGTGAAGGGATGAAGTGTGGGTCGTGAGTTTTCTCCCTTTCCAATCCTGTGTTGTGAGTTTAAAGTGGAAAAACTAGAGAAGTTGAATCCTGACGGTTGATTAGATCAGATGGCTCTGTTTGGTTTGACTGTGTGACTGCATTGTTTTTATGACTGCAGTCAATCACATCCCAAAAGAAAGATGTTTAGTAAAATGGTTTATGGAAAACACCCTAAAAAGTAAAAGGTTAAATTTCTACTGTAATGAGTTTTACAAAGTAGTATAAGCATAACCCGATGGATGTTAGCCCTTTTGTATCACCTAAAGTTCATCACATTGTGATTGCTCTATTGTAACTTTTCATTCTCCTGAAACAGTGATGTACAGTCGTAGAGGAAAAATACGCATGGAGGAGGACACGACAGTGTATCTTCCTCATGAATTGATCATCTTAATCCTATTATGGTTGCCGGTGAAGTCTCTTATACGTTTCAAGAGTGTTTGTAAGTCTTGGTTTTCTCTCATCTCTGATCCTTGTTTCGCTAATTCACATTTTGAACTTACTACCAAAACACACACTCACAGACGACTTATTTTCATGTCAAATATGGTTAGATCTACACTATCAATAGATTTTGAAGAACCTCTAGACTATGATGCTGCCTATGCAACATATATACCGACCCCCAGTTTTATGACCCCAAAATCTGGTTGTTATATTAAAATTATAAGTTCATGTAGAGGCTTTATATTTTTGCATCGTCTTTCAAGCTACTACATATGGAATCCATCCACCGGAGTTGAGAGACAAATACCTCTCTCTCTTAATGAATCACATGGCTATGGAAATCGTAATACGTATTTATATGGATTTGGGTACGATGAATTAAAAGATGATTACTTGGTGGTTATGTTCTATTTTAATAAATTCTTAGATGAAGTAATGTATTCAGGATTGGAGTTTTTCTCATTGAGAGATAATATGTGGCATGTAATCGAGGGTACCCATTTTCCTGATATCAAGTACCGTCCCAATCCTGAGCCTAGAGTAGGGTTGGTCTTTAATGGGTCTATTCATTGGTCATCGATGTATGATATTCTTGCATTTGATTTAATTGAAAGAAAACTTTTAGTGATGCCTTTTCCAAATGATTTTGACCATACTCGTGAAAAATGTGATTTGTGGGTATTTAGAGAATACTTTAGTCTATGGGCTATGGGGTATCATACACTTGAGATATGGATGATGAAAGAATACAAAGTACAATCATCTTGGACTAAGATTCTTATTCTTTCTCTTGATGTCATCCCCTCTCGGCACTTTATCCCAATATGTTCTACAAAAAGTGGTGACATTGTTGGAAGAGATGACAAAACTGGAATGCTGAAGTATAATTACAAAGGAGAGCTTCTAGAGCATGACTCATTATGGGATGATCCATTACTTTCAACTGGATCCCAATTTGCGGTGTATACAGAATCTTTGCTTTCACTCCCCGGTGACAACATGCAAGCCTAA
Protein sequence

>MS.gene036760.t1

MVLCVSLRVLIMLDELTHSCSPRKIMGCQGGAGGLEARRWEKQRIFKSEGMKCGSYYIWNPSTGVERQIPLSLNESHGYGNHEVMYSGLEFFSLRDNMWHVIEGTHFPDIKYRPNPEPRVGLVFNGSIHWSSMYDILAFDLIERKLLVMPFPNDFDHTREKCDLWVFREYFSLWAMGYHTLEIWMMKEYKVQSSWTKILILSLDVIPSRHFIPICSTKSGDIVGRDDKTGMLKYNYKGELLEHDSLWDDPLLSTGSQFAVYTESLLSLPGDNMQA