AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene066639

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066639.t1 MTR_4g021785 81.973 294 51 1 1 292 62 355 1.73e-174 486
MS.gene066639.t1 MTR_4g023080 80.479 292 56 1 1 291 62 353 9.03e-171 477
MS.gene066639.t1 MTR_4g023130 74.638 276 68 2 17 291 38 312 2.73e-145 410
MS.gene066639.t1 MTR_4g023090 64.038 317 88 6 1 291 69 385 3.93e-135 387
MS.gene066639.t1 MTR_4g023380 62.733 322 79 7 1 292 69 379 3.90e-128 370
MS.gene066639.t1 MTR_4g023070 58.917 314 106 3 1 291 56 369 1.98e-125 362
MS.gene066639.t1 MTR_4g023120 58.095 315 109 3 1 292 56 370 1.29e-123 358
MS.gene066639.t1 MTR_4g023440 59.797 296 78 3 1 291 72 331 5.52e-114 332
MS.gene066639.t1 MTR_4g023200 59.122 296 115 4 1 290 63 358 1.18e-110 324
MS.gene066639.t1 MTR_4g023150 59.524 294 113 4 3 290 65 358 2.05e-110 324
MS.gene066639.t1 MTR_4g023190 59.524 294 112 5 3 290 65 357 4.30e-110 323
MS.gene066639.t1 MTR_3g103020 55.333 300 118 7 9 292 79 378 1.44e-98 294
MS.gene066639.t1 MTR_4g117720 51.475 305 125 8 9 292 76 378 6.05e-90 272
MS.gene066639.t1 MTR_4g109270 51.815 303 131 7 3 292 64 364 2.20e-89 270
MS.gene066639.t1 MTR_4g109280 51.342 298 127 8 9 292 66 359 4.79e-89 270
MS.gene066639.t1 MTR_4g094365 51.634 306 132 8 1 292 61 364 6.70e-88 266
MS.gene066639.t1 MTR_3g034180 51.274 314 125 9 3 291 178 488 1.01e-83 260
MS.gene066639.t1 MTR_4g122850 51.935 310 123 13 4 292 60 364 4.95e-83 255
MS.gene066639.t1 MTR_6g060650 48.534 307 132 8 9 291 68 372 4.42e-82 252
MS.gene066639.t1 MTR_8g433040 50.000 304 126 6 4 292 72 364 3.53e-80 247
MS.gene066639.t1 MTR_8g032380 50.000 304 126 6 4 292 72 364 3.53e-80 247
MS.gene066639.t1 MTR_3g034130 51.228 285 114 7 9 270 70 352 8.34e-80 246
MS.gene066639.t1 MTR_4g116330 48.148 297 138 6 11 292 85 380 2.14e-79 245
MS.gene066639.t1 MTR_3g034160 50.161 311 129 8 3 289 64 372 3.28e-79 245
MS.gene066639.t1 MTR_4g117770 48.475 295 137 6 12 291 72 366 6.17e-79 244
MS.gene066639.t1 MTR_4g117810 48.475 295 137 6 12 291 72 366 6.17e-79 244
MS.gene066639.t1 MTR_4g117850 49.000 300 126 10 9 289 85 376 5.74e-76 236
MS.gene066639.t1 MTR_4g117780 48.475 295 137 7 12 291 72 366 1.91e-75 235
MS.gene066639.t1 MTR_4g117870 47.586 290 105 8 11 288 9 263 7.67e-75 230
MS.gene066639.t1 MTR_4g118380 46.939 294 117 7 9 267 68 357 1.57e-74 232
MS.gene066639.t1 MTR_5g070130 43.974 307 149 9 9 292 71 377 8.67e-71 224
MS.gene066639.t1 MTR_5g097210 49.291 282 119 10 24 288 85 359 2.73e-69 219
MS.gene066639.t1 MTR_8g032390 50.769 260 110 8 44 287 113 370 3.05e-68 216
MS.gene066639.t1 MTR_4g118400 45.788 273 117 7 24 285 41 293 1.11e-66 210
MS.gene066639.t1 MTR_5g070088 41.033 329 150 8 1 290 60 383 8.97e-66 211
MS.gene066639.t1 MTR_4g116320 54.419 215 82 5 89 289 43 255 8.98e-65 204
MS.gene066639.t1 MTR_1g055195 44.444 288 138 9 19 292 199 478 2.18e-64 210
MS.gene066639.t1 MTR_1g055135 42.671 307 149 9 9 292 73 375 2.92e-62 201
MS.gene066639.t1 MTR_5g070080 42.320 319 147 10 9 292 70 386 3.14e-62 201
MS.gene066639.t1 MTR_8g040935 52.217 203 88 4 99 292 6 208 1.72e-58 186
MS.gene066639.t1 MTR_6g463430 55.155 194 76 5 103 290 12 200 4.56e-58 185
MS.gene066639.t1 MTR_8g433030 52.093 215 89 7 85 287 125 337 5.34e-58 189
MS.gene066639.t1 MTR_4g121580 43.464 306 120 13 8 291 74 348 2.70e-57 189
MS.gene066639.t1 MTR_4g116330 41.216 296 121 6 11 292 85 341 3.49e-57 187
MS.gene066639.t1 MTR_4g117750 42.444 311 144 10 1 288 57 355 5.85e-57 190
MS.gene066639.t1 MTR_4g117750 55.963 109 46 1 184 290 373 481 1.55e-30 119
MS.gene066639.t1 MTR_7g079370 38.562 306 155 10 9 285 48 349 1.02e-54 181
MS.gene066639.t1 MTR_7g079400 38.924 316 158 11 7 292 27 337 7.37e-51 171
MS.gene066639.t1 MTR_1g055165 38.144 291 131 8 9 292 70 318 4.13e-49 166
MS.gene066639.t1 MTR_4g118370 41.270 252 109 9 54 289 29 257 1.32e-47 160
MS.gene066639.t1 MTR_4g117530 41.897 253 108 6 49 292 31 253 3.67e-47 159
MS.gene066639.t1 MTR_8g013010 45.641 195 90 5 12 193 118 309 1.86e-44 153
MS.gene066639.t1 MTR_8g102520 37.748 302 143 11 9 292 48 322 1.18e-43 151
MS.gene066639.t1 MTR_4g114700 39.080 261 93 7 42 283 5 218 4.76e-42 145
MS.gene066639.t1 MTR_2g048580 38.276 290 138 15 11 285 72 335 6.50e-42 147
MS.gene066639.t1 MTR_1g055175 42.857 196 101 6 106 292 8 201 5.01e-41 141
MS.gene066639.t1 MTR_1g055250 41.951 205 102 7 88 279 53 253 2.92e-40 143
MS.gene066639.t1 MTR_4g117430 51.079 139 66 2 57 193 14 152 8.10e-37 129
MS.gene066639.t1 MTR_7g079420 35.185 270 123 11 45 292 905 1144 1.59e-33 130
MS.gene066639.t1 MTR_7g117720 49.275 138 52 5 9 130 52 187 1.59e-32 121
MS.gene066639.t1 MTR_7g117720 64.706 85 24 2 207 285 186 270 3.43e-22 93.6
MS.gene066639.t1 MTR_4g023430 53.719 121 39 2 177 292 114 222 1.82e-31 117
MS.gene066639.t1 MTR_5g023000 63.830 94 32 1 201 292 6 99 1.94e-31 113
MS.gene066639.t1 MTR_4g116340 44.643 168 77 5 9 160 80 247 4.89e-29 111
MS.gene066639.t1 MTR_8g098830 41.520 171 85 7 102 263 30 194 2.82e-28 108
MS.gene066639.t1 MTR_4g118360 55.455 110 41 3 184 289 18 123 4.54e-28 105
MS.gene066639.t1 MTR_4g122860 40.314 191 75 9 112 291 157 319 1.50e-25 103
MS.gene066639.t1 MTR_7g079450 42.958 142 73 4 154 292 1 137 7.81e-24 94.7
MS.gene066639.t1 MTR_6g034720 45.378 119 51 4 67 171 51 169 1.33e-20 88.2
MS.gene066639.t1 MTR_4g117550 28.364 275 139 10 47 290 127 374 5.88e-20 89.0
MS.gene066639.t1 MTR_4g023100 77.778 54 12 0 236 289 63 116 3.25e-19 81.6
MS.gene066639.t1 MTR_4g133170 26.122 245 151 9 39 257 86 326 2.05e-18 84.7
MS.gene066639.t1 MTR_2g022000 26.974 304 170 10 26 281 108 407 1.76e-17 82.4
MS.gene066639.t1 MTR_0129s0050 27.434 339 179 11 7 289 81 408 4.59e-17 80.9
MS.gene066639.t1 MTR_0128s0020 27.698 278 163 11 41 283 118 392 1.00e-16 80.1
MS.gene066639.t1 MTR_6g021880 24.315 292 200 6 14 284 90 381 1.29e-16 79.7
MS.gene066639.t1 MTR_5g097330 25.623 281 165 8 39 285 129 399 1.52e-16 79.3
MS.gene066639.t1 MTR_4g028510 26.885 305 176 11 26 287 100 400 2.73e-16 79.0
MS.gene066639.t1 MTR_0129s0070 25.818 275 162 9 47 285 124 392 1.85e-15 76.3
MS.gene066639.t1 MTR_1g068835 29.075 227 137 8 19 223 67 291 4.25e-15 75.1
MS.gene066639.t1 MTR_5g097350 24.490 294 197 7 10 285 97 383 2.61e-14 72.8
MS.gene066639.t1 MTR_7g070880 26.394 269 127 11 41 245 114 375 2.95e-14 72.8
MS.gene066639.t1 MTR_2g104340 26.990 289 160 11 47 291 117 398 4.26e-14 72.4
MS.gene066639.t1 MTR_5g011200 26.840 231 151 10 6 224 82 306 5.75e-14 71.6
MS.gene066639.t1 MTR_0129s0120 25.806 279 157 10 47 285 124 392 6.44e-14 71.6
MS.gene066639.t1 MTR_8g013005 63.158 57 19 1 238 292 3 59 7.28e-14 65.5
MS.gene066639.t1 MTR_8g464770 26.531 294 172 13 24 285 95 376 1.13e-13 70.9
MS.gene066639.t1 MTR_5g096710 28.296 311 160 16 27 284 98 398 1.18e-13 70.9
MS.gene066639.t1 MTR_2g078870 27.308 260 160 14 44 284 58 307 1.30e-13 70.1
MS.gene066639.t1 MTR_7g061940 28.421 190 114 6 87 257 80 266 1.35e-13 69.7
MS.gene066639.t1 MTR_0128s0070 26.506 249 155 9 60 283 150 395 2.20e-13 70.1
MS.gene066639.t1 MTR_2g055970 26.038 265 174 11 37 284 301 560 3.88e-13 69.7
MS.gene066639.t1 MTR_4g030830 27.517 298 154 15 38 284 107 393 4.22e-13 69.3
MS.gene066639.t1 MTR_1g055200 48.052 77 31 2 42 110 5 80 5.86e-13 64.3
MS.gene066639.t1 MTR_2g104280 27.148 291 156 13 47 290 125 406 8.35e-13 68.6
MS.gene066639.t1 MTR_2g026010 26.744 258 158 8 15 242 62 318 9.65e-13 68.2
MS.gene066639.t1 MTR_3g036290 31.016 187 115 7 41 223 117 293 1.00e-12 68.2
MS.gene066639.t1 MTR_1g050542 25.379 264 172 12 41 284 146 404 1.23e-12 68.2
MS.gene066639.t1 MTR_1g097490 25.084 299 195 13 1 284 106 390 1.49e-12 67.8
MS.gene066639.t1 MTR_5g069390 26.523 279 167 13 43 289 145 417 2.04e-12 67.4
MS.gene066639.t1 MTR_2g426070 27.273 253 145 11 43 260 105 353 4.37e-12 66.2
MS.gene066639.t1 MTR_2g021155 28.814 236 139 13 43 257 130 357 4.60e-12 66.6
MS.gene066639.t1 MTR_4g028680 25.625 320 184 14 12 287 89 398 5.12e-12 66.2
MS.gene066639.t1 MTR_8g099460 27.083 240 141 9 15 223 65 301 6.91e-12 65.9
MS.gene066639.t1 MTR_7g056503 25.862 290 162 14 40 284 116 397 7.17e-12 65.9
MS.gene066639.t1 MTR_2g038680 23.592 284 154 11 55 287 138 409 7.78e-12 65.5
MS.gene066639.t1 MTR_2g025420 28.030 264 142 13 23 242 84 343 9.38e-12 65.5
MS.gene066639.t1 MTR_4g061340 25.692 253 143 11 2 223 77 315 1.24e-11 64.7
MS.gene066639.t1 MTR_2g028130 27.869 244 135 12 43 249 106 345 1.46e-11 64.7
MS.gene066639.t1 MTR_2g426090 27.234 235 133 9 43 242 100 331 1.52e-11 64.7
MS.gene066639.t1 MTR_7g077970 26.545 275 158 13 40 278 113 379 1.60e-11 64.7
MS.gene066639.t1 MTR_4g130330 23.875 289 171 13 43 287 106 389 2.05e-11 64.3
MS.gene066639.t1 MTR_2g046830 25.912 274 174 13 4 257 83 347 2.19e-11 64.3
MS.gene066639.t1 MTR_7g070830 25.843 267 131 10 41 245 114 375 2.41e-11 64.3
MS.gene066639.t1 MTR_5g069120 34.921 126 63 3 9 115 52 177 3.35e-11 61.2
MS.gene066639.t1 MTR_6g086825 25.641 312 180 13 26 290 155 461 4.01e-11 63.5
MS.gene066639.t1 MTR_7g017130 26.990 289 168 13 37 290 118 398 5.39e-11 63.2
MS.gene066639.t1 MTR_7g407070 29.121 182 104 8 85 245 184 361 6.23e-11 62.8
MS.gene066639.t1 MTR_7g017170 28.807 243 132 12 37 246 118 352 6.47e-11 62.8
MS.gene066639.t1 MTR_8g041270 25.524 286 164 10 47 289 127 406 7.05e-11 62.8
MS.gene066639.t1 MTR_8g063440 23.913 276 174 10 39 285 111 379 7.32e-11 62.8
MS.gene066639.t1 MTR_8g039500 26.592 267 159 12 16 254 83 340 7.78e-11 62.4
MS.gene066639.t1 MTR_2g047832 24.658 292 174 12 9 262 94 377 8.45e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066639.t1 AT3G06240 29.965 287 171 12 18 284 143 419 2.65e-18 84.7

Find 51 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAGTTGCGTTTGATTTAA+TGG 0.059074 4.2:-79779041 MS.gene066639:CDS
TCAACAGGAAAATAAGATTT+TGG 0.216085 4.2:+79779412 None:intergenic
AATGATAAGGGACAGTTATT+AGG 0.237016 4.2:-79778740 MS.gene066639:CDS
TTATGTTGTCGTTCCTTATC+AGG 0.240728 4.2:-79779131 MS.gene066639:CDS
ATACCGATACAATTGTAATA+TGG 0.261642 4.2:-79778913 MS.gene066639:CDS
TTCCAATGTTTCATCACATT+TGG 0.309532 4.2:-79779209 MS.gene066639:CDS
ATGACAATCTGCTACTGATT+TGG 0.318251 4.2:+79779279 None:intergenic
TTGGAGAATTTCTCAGTCTA+TGG 0.324275 4.2:-79778949 MS.gene066639:CDS
TATTTAATGGGGTTATTCAC+TGG 0.364093 4.2:-79779096 MS.gene066639:CDS
ATGATAAGGGACAGTTATTA+GGG 0.377615 4.2:-79778739 MS.gene066639:CDS
GGATTCCATACGTAGATGTT+TGG 0.379850 4.2:+79779346 None:intergenic
GTCGTTCCTTATCAGGGAAA+AGG 0.391301 4.2:-79779124 MS.gene066639:CDS
TTATAGCCTTGATTTAGATT+TGG 0.392445 4.2:-79779068 MS.gene066639:CDS
GAGTCTCTGCTTTCACTCCT+TGG 0.393410 4.2:-79778671 MS.gene066639:CDS
TGATAAGGAACGACAACATA+AGG 0.409460 4.2:+79779133 None:intergenic
CAATGTTTCATCACATTTGG+AGG 0.422192 4.2:-79779206 MS.gene066639:CDS
TTAGTGAAGTATAATGATAA+GGG 0.423081 4.2:-79778752 MS.gene066639:CDS
ACTCTTGTGCTTCCTCTTCG+TGG 0.426296 4.2:-79778851 MS.gene066639:CDS
TACCGATACAATTGTAATAT+GGG 0.432758 4.2:-79778912 MS.gene066639:CDS
CATGAACCTCTAATTTCAAC+AGG 0.433120 4.2:+79779397 None:intergenic
TAATGGGGTTATTCACTGGC+TGG 0.442106 4.2:-79779092 MS.gene066639:CDS
ATTAGTGAAGTATAATGATA+AGG 0.446149 4.2:-79778753 MS.gene066639:CDS
AATACAAAATGCATTCATCT+TGG 0.453016 4.2:-79778880 MS.gene066639:CDS
TTCAGATTGACTGTTACAAA+TGG 0.461693 4.2:+79778709 None:intergenic
GATAGAATTTCATGAGATAG+AGG 0.471551 4.2:+79779496 None:intergenic
TGGTTAAAATCACTTGGAAC+AGG 0.477567 4.2:+79778998 None:intergenic
GCTACTGATTTGGAATCAAA+AGG 0.479935 4.2:+79779289 None:intergenic
AAATTAAGGTTCACTGAAGC+AGG 0.480865 4.2:+79779442 None:intergenic
GATATTATTGGAAGAAATCA+TGG 0.485431 4.2:-79778782 MS.gene066639:CDS
ATAGGGTGAAAGTAGTGATC+AGG 0.486180 4.2:+79778824 None:intergenic
TCGTTCCTTATCAGGGAAAA+GGG 0.494287 4.2:-79779123 MS.gene066639:CDS
TGACATCCAAATCTAAATCA+AGG 0.510839 4.2:+79779062 None:intergenic
CTCCAAATGTGATGAAACAT+TGG 0.514789 4.2:+79779207 None:intergenic
TATGTTGTCGTTCCTTATCA+GGG 0.522844 4.2:-79779130 MS.gene066639:CDS
AAATTAGAGGTTCATGTAGA+GGG 0.527818 4.2:-79779390 MS.gene066639:CDS
GAAATTAGAGGTTCATGTAG+AGG 0.533762 4.2:-79779391 MS.gene066639:CDS
TTCCATACGTAGATGTTTGG+AGG 0.535598 4.2:+79779349 None:intergenic
CGAGTCAAAAGATGATCACT+TGG 0.539422 4.2:-79779242 MS.gene066639:CDS
CACCCATATTACAATTGTAT+CGG 0.542804 4.2:+79778910 None:intergenic
TACGTATGGAATCCATGCAC+TGG 0.547024 4.2:-79779337 MS.gene066639:CDS
GATAAGGAACGACAACATAA+GGG 0.555569 4.2:+79779134 None:intergenic
TCTCTGTTAGGGATAATATG+TGG 0.556637 4.2:-79779180 MS.gene066639:CDS
AATCTATGGTTAAAATCACT+TGG 0.558942 4.2:+79778992 None:intergenic
AATATGTGGAAAGAAATTGA+TGG 0.570715 4.2:-79779166 MS.gene066639:CDS
GACCTCCAAACATCTACGTA+TGG 0.581549 4.2:-79779351 MS.gene066639:CDS
GTCAAAAGATGATCACTTGG+TGG 0.588722 4.2:-79779239 MS.gene066639:CDS
TTGGAATCAAAAGGAGACCC+AGG 0.600723 4.2:+79779298 None:intergenic
ATACGTAGATGTTTGGAGGT+CGG 0.635835 4.2:+79779353 None:intergenic
AAGCATGCTCATTGTCACCA+AGG 0.655137 4.2:+79778654 None:intergenic
AAATCAGTAGCAGATTGTCA+TGG 0.657033 4.2:-79779277 MS.gene066639:CDS
TGATCAGGAATGCCACGAAG+AGG 0.662656 4.2:+79778839 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTACGAAGAAATCTA+TGG + chr4.2:79779185-79779204 None:intergenic 20.0%
!! ACAAAAAATGGTGATATTAT+TGG - chr4.2:79779366-79779385 MS.gene066639:CDS 20.0%
!! ATTAGTGAAGTATAATGATA+AGG - chr4.2:79779407-79779426 MS.gene066639:CDS 20.0%
!! GATTTAAAAAACAAATACCT+GGG - chr4.2:79778845-79778864 MS.gene066639:CDS 20.0%
!! TTAGTGAAGTATAATGATAA+GGG - chr4.2:79779408-79779427 MS.gene066639:CDS 20.0%
!!! AAAAGGGTTTTTATTTAATG+GGG - chr4.2:79779053-79779072 MS.gene066639:CDS 20.0%
!!! ATAGATTTCTTCGTAATTTT+TGG - chr4.2:79779184-79779203 MS.gene066639:CDS 20.0%
!!! GAAAAGGGTTTTTATTTAAT+GGG - chr4.2:79779052-79779071 MS.gene066639:CDS 20.0%
!!! TAGATTTCTTCGTAATTTTT+GGG - chr4.2:79779185-79779204 MS.gene066639:CDS 20.0%
! AATACAAAATGCATTCATCT+TGG - chr4.2:79779280-79779299 MS.gene066639:CDS 25.0%
! AATATGTGGAAAGAAATTGA+TGG - chr4.2:79778994-79779013 MS.gene066639:CDS 25.0%
! AATCTATGGTTAAAATCACT+TGG + chr4.2:79779171-79779190 None:intergenic 25.0%
! ATACCGATACAATTGTAATA+TGG - chr4.2:79779247-79779266 MS.gene066639:CDS 25.0%
! GATATTATTGGAAGAAATCA+TGG - chr4.2:79779378-79779397 MS.gene066639:CDS 25.0%
! GGATTTAAAAAACAAATACC+TGG - chr4.2:79778844-79778863 MS.gene066639:CDS 25.0%
! TACCGATACAATTGTAATAT+GGG - chr4.2:79779248-79779267 MS.gene066639:CDS 25.0%
!! TATTTTCCTGTTGAAATTAG+AGG - chr4.2:79778757-79778776 MS.gene066639:CDS 25.0%
!! TCAACAGGAAAATAAGATTT+TGG + chr4.2:79778751-79778770 None:intergenic 25.0%
!! TTATAGCCTTGATTTAGATT+TGG - chr4.2:79779092-79779111 MS.gene066639:CDS 25.0%
!!! ATTTTGGAAGCGAAAAATTA+AGG + chr4.2:79778735-79778754 None:intergenic 25.0%
!!! CATTTTTTGTAGAGTGAATA+GGG + chr4.2:79779356-79779375 None:intergenic 25.0%
!!! GGAAAAGGGTTTTTATTTAA+TGG - chr4.2:79779051-79779070 MS.gene066639:CDS 25.0%
AAATTAGAGGTTCATGTAGA+GGG - chr4.2:79778770-79778789 MS.gene066639:CDS 30.0%
AATGATAAGGGACAGTTATT+AGG - chr4.2:79779420-79779439 MS.gene066639:CDS 30.0%
ATGATAAGGGACAGTTATTA+GGG - chr4.2:79779421-79779440 MS.gene066639:CDS 30.0%
CACCCATATTACAATTGTAT+CGG + chr4.2:79779253-79779272 None:intergenic 30.0%
CCTATTCACTCTACAAAAAA+TGG - chr4.2:79779354-79779373 MS.gene066639:CDS 30.0%
GATAGAATTTCATGAGATAG+AGG + chr4.2:79778667-79778686 None:intergenic 30.0%
TATTTAATGGGGTTATTCAC+TGG - chr4.2:79779064-79779083 MS.gene066639:CDS 30.0%
TGACATCCAAATCTAAATCA+AGG + chr4.2:79779101-79779120 None:intergenic 30.0%
TTCAGATTGACTGTTACAAA+TGG + chr4.2:79779454-79779473 None:intergenic 30.0%
TTCCAATGTTTCATCACATT+TGG - chr4.2:79778951-79778970 MS.gene066639:CDS 30.0%
! CATAGTTGCGTTTGATTTAA+TGG - chr4.2:79779119-79779138 MS.gene066639:CDS 30.0%
!!! CCATTTTTTGTAGAGTGAAT+AGG + chr4.2:79779357-79779376 None:intergenic 30.0%
!!! CTTCGTAATTTTTGGGTATT+TGG - chr4.2:79779192-79779211 MS.gene066639:CDS 30.0%
!!! TGTTTTTTAAATCCAGTGCA+TGG + chr4.2:79778838-79778857 None:intergenic 30.0%
AAATCAGTAGCAGATTGTCA+TGG - chr4.2:79778883-79778902 MS.gene066639:CDS 35.0%
AAATTAAGGTTCACTGAAGC+AGG + chr4.2:79778721-79778740 None:intergenic 35.0%
CAATGTTTCATCACATTTGG+AGG - chr4.2:79778954-79778973 MS.gene066639:CDS 35.0%
CATGAACCTCTAATTTCAAC+AGG + chr4.2:79778766-79778785 None:intergenic 35.0%
CTCCAAATGTGATGAAACAT+TGG + chr4.2:79778956-79778975 None:intergenic 35.0%
GAAATTAGAGGTTCATGTAG+AGG - chr4.2:79778769-79778788 MS.gene066639:CDS 35.0%
GATAAGGAACGACAACATAA+GGG + chr4.2:79779029-79779048 None:intergenic 35.0%
TATGTTGTCGTTCCTTATCA+GGG - chr4.2:79779030-79779049 MS.gene066639:CDS 35.0%
TCTCTGTTAGGGATAATATG+TGG - chr4.2:79778980-79778999 MS.gene066639:CDS 35.0%
TGATAAGGAACGACAACATA+AGG + chr4.2:79779030-79779049 None:intergenic 35.0%
TGGTTAAAATCACTTGGAAC+AGG + chr4.2:79779165-79779184 None:intergenic 35.0%
TTATGTTGTCGTTCCTTATC+AGG - chr4.2:79779029-79779048 MS.gene066639:CDS 35.0%
TTGGAGAATTTCTCAGTCTA+TGG - chr4.2:79779211-79779230 MS.gene066639:CDS 35.0%
! AAAAACCCTTTTCCCTGATA+AGG + chr4.2:79779045-79779064 None:intergenic 35.0%
! ATGACAATCTGCTACTGATT+TGG + chr4.2:79778884-79778903 None:intergenic 35.0%
! ATTTGGAGGTTTTCTCTGTT+AGG - chr4.2:79778968-79778987 MS.gene066639:CDS 35.0%
! TTTGGAGGTTTTCTCTGTTA+GGG - chr4.2:79778969-79778988 MS.gene066639:CDS 35.0%
!! GCTACTGATTTGGAATCAAA+AGG + chr4.2:79778874-79778893 None:intergenic 35.0%
ATACGTAGATGTTTGGAGGT+CGG + chr4.2:79778810-79778829 None:intergenic 40.0%
ATAGGGTGAAAGTAGTGATC+AGG + chr4.2:79779339-79779358 None:intergenic 40.0%
CGAGTCAAAAGATGATCACT+TGG - chr4.2:79778918-79778937 MS.gene066639:CDS 40.0%
GGATTCCATACGTAGATGTT+TGG + chr4.2:79778817-79778836 None:intergenic 40.0%
GTCAAAAGATGATCACTTGG+TGG - chr4.2:79778921-79778940 MS.gene066639:CDS 40.0%
TCGTTCCTTATCAGGGAAAA+GGG - chr4.2:79779037-79779056 MS.gene066639:CDS 40.0%
TTCCATACGTAGATGTTTGG+AGG + chr4.2:79778814-79778833 None:intergenic 40.0%
AAGCATGCTCATTGTCACCA+AGG + chr4.2:79779509-79779528 None:intergenic 45.0%
GACCTCCAAACATCTACGTA+TGG - chr4.2:79778809-79778828 MS.gene066639:CDS 45.0%
GTCGTTCCTTATCAGGGAAA+AGG - chr4.2:79779036-79779055 MS.gene066639:CDS 45.0%
TAATGGGGTTATTCACTGGC+TGG - chr4.2:79779068-79779087 MS.gene066639:CDS 45.0%
TACGTATGGAATCCATGCAC+TGG - chr4.2:79778823-79778842 MS.gene066639:CDS 45.0%
TTGGAATCAAAAGGAGACCC+AGG + chr4.2:79778865-79778884 None:intergenic 45.0%
ACTCTTGTGCTTCCTCTTCG+TGG - chr4.2:79779309-79779328 MS.gene066639:CDS 50.0%
GAGTCTCTGCTTTCACTCCT+TGG - chr4.2:79779489-79779508 MS.gene066639:CDS 50.0%
TGATCAGGAATGCCACGAAG+AGG + chr4.2:79779324-79779343 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 79778652 79779530 79778652 ID=MS.gene066639
chr4.2 mRNA 79778652 79779530 79778652 ID=MS.gene066639.t1;Parent=MS.gene066639
chr4.2 exon 79778652 79779530 79778652 ID=MS.gene066639.t1.exon1;Parent=MS.gene066639.t1
chr4.2 CDS 79778652 79779530 79778652 ID=cds.MS.gene066639.t1;Parent=MS.gene066639.t1
Gene Sequence

>MS.gene066639

ATGTGCATATCACCTCTATCTCATGAAATTCTATCTATAGATTTTGAAGCATTTTTTAATGATGTTCCTGCTTCAGTGAACCTTAATTTTTCGCTTCCAAAATCTTATTTTCCTGTTGAAATTAGAGGTTCATGTAGAGGGTTTATACTTTTGTACCGACCTCCAAACATCTACGTATGGAATCCATGCACTGGATTTAAAAAACAAATACCTGGGTCTCCTTTTGATTCCAAATCAGTAGCAGATTGTCATGGTCTTGTTTATGACGAGTCAAAAGATGATCACTTGGTGGTTGTATTTTCCAATGTTTCATCACATTTGGAGGTTTTCTCTGTTAGGGATAATATGTGGAAAGAAATTGATGGTATTCACTTCCCTTATGTTGTCGTTCCTTATCAGGGAAAAGGGTTTTTATTTAATGGGGTTATTCACTGGCTGGCTTATAGCCTTGATTTAGATTTGGATGTCATAGTTGCGTTTGATTTAATGGAAAAGAAAATGTTTGAGATGCCTGTTCCAAGTGATTTTAACCATAGATTTCTTCGTAATTTTTGGGTATTTGGAGAATTTCTCAGTCTATGGTATAAGAATAATTATACCGATACAATTGTAATATGGGTGATGAAAGAATACAAAATGCATTCATCTTGGACTAAAACTCTTGTGCTTCCTCTTCGTGGCATTCCTGATCACTACTTTCACCCTATTCACTCTACAAAAAATGGTGATATTATTGGAAGAAATCATGGTACTAGATTAGTGAAGTATAATGATAAGGGACAGTTATTAGGGCAGCGCTCCATTTGTAACAGTCAATCTGAAGTTGTCATGTATACAGAGTCTCTGCTTTCACTCCTTGGTGACAATGAGCATGCTTAA
Protein sequence

>MS.gene066639.t1

MCISPLSHEILSIDFEAFFNDVPASVNLNFSLPKSYFPVEIRGSCRGFILLYRPPNIYVWNPCTGFKKQIPGSPFDSKSVADCHGLVYDESKDDHLVVVFSNVSSHLEVFSVRDNMWKEIDGIHFPYVVVPYQGKGFLFNGVIHWLAYSLDLDLDVIVAFDLMEKKMFEMPVPSDFNHRFLRNFWVFGEFLSLWYKNNYTDTIVIWVMKEYKMHSSWTKTLVLPLRGIPDHYFHPIHSTKNGDIIGRNHGTRLVKYNDKGQLLGQRSICNSQSEVVMYTESLLSLLGDNEHA