AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047279


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047279.t1 MTR_0667s0010 91.061 179 16 0 1 179 1 179 1.09e-115 334
MS.gene047279.t1 MTR_2g426070 65.803 193 51 5 1 179 1 192 3.80e-79 241
MS.gene047279.t1 MTR_3g083010 66.327 196 48 5 1 179 1 195 1.32e-78 240
MS.gene047279.t1 MTR_2g028110 71.512 172 46 2 6 177 4 172 2.07e-78 238
MS.gene047279.t1 MTR_2g426060 70.718 181 42 6 1 172 1 179 5.28e-77 236
MS.gene047279.t1 MTR_2g425980 68.085 188 48 5 1 179 1 185 5.28e-77 236
MS.gene047279.t1 MTR_2g024100 76.875 160 36 1 21 179 22 181 2.60e-74 229
MS.gene047279.t1 MTR_2g426020 65.574 183 49 5 1 172 1 180 2.84e-73 226
MS.gene047279.t1 MTR_8g099460 68.539 178 53 2 1 176 1 177 1.73e-72 224
MS.gene047279.t1 MTR_2g028130 65.464 194 48 6 1 179 1 190 4.79e-72 223
MS.gene047279.t1 MTR_2g426090 65.405 185 52 5 1 175 1 183 2.29e-71 221
MS.gene047279.t1 MTR_2g025420 59.585 193 64 4 1 179 1 193 2.67e-71 221
MS.gene047279.t1 MTR_2g028140 65.816 196 48 6 1 179 1 194 1.31e-70 219
MS.gene047279.t1 MTR_4g070550 66.316 190 51 6 1 179 1 188 1.73e-70 219
MS.gene047279.t1 MTR_2g028160 61.340 194 56 5 1 179 1 190 1.23e-68 214
MS.gene047279.t1 MTR_2g021050 61.202 183 41 5 1 179 1 157 3.66e-63 199
MS.gene047279.t1 MTR_2g031720 61.878 181 50 6 1 177 1 166 3.09e-62 197
MS.gene047279.t1 MTR_2g031700 58.757 177 59 4 1 177 1 163 4.39e-60 189
MS.gene047279.t1 MTR_2g031640 58.989 178 58 5 1 177 1 164 7.53e-59 188
MS.gene047279.t1 MTR_1g068875 60.234 171 57 3 6 176 4 163 1.79e-57 184
MS.gene047279.t1 MTR_1g068835 57.471 174 60 4 6 177 4 165 6.50e-56 181
MS.gene047279.t1 MTR_2g031680 57.303 178 62 4 1 178 1 164 4.30e-55 179
MS.gene047279.t1 MTR_1g068905 58.642 162 55 3 6 166 4 154 2.38e-53 172
MS.gene047279.t1 MTR_1g068860 59.195 174 58 4 6 177 4 166 1.08e-52 172
MS.gene047279.t1 MTR_2g026010 57.803 173 59 4 6 177 4 163 2.20e-52 172
MS.gene047279.t1 MTR_4g006270 55.758 165 58 4 6 170 4 153 4.56e-49 164
MS.gene047279.t1 MTR_2g024110 50.588 170 67 5 6 172 4 159 3.41e-46 155
MS.gene047279.t1 MTR_2g022170 57.664 137 45 3 9 145 7 130 4.93e-44 142
MS.gene047279.t1 MTR_2g025960 70.455 88 21 1 90 172 1 88 1.92e-35 126
MS.gene047279.t1 MTR_7g110360 44.571 175 76 5 6 170 39 202 5.74e-35 125
MS.gene047279.t1 MTR_4g133170 40.000 175 91 3 6 177 4 167 5.54e-34 124
MS.gene047279.t1 MTR_5g083940 42.424 165 48 5 6 170 4 121 1.76e-27 105
MS.gene047279.t1 MTR_2g437190 53.097 113 36 4 48 155 56 156 2.76e-23 90.9
MS.gene047279.t1 MTR_2g025995 85.714 49 7 0 1 49 1 49 3.31e-20 84.7
MS.gene047279.t1 MTR_2g040050 43.137 102 47 3 69 169 16 107 1.08e-19 83.6
MS.gene047279.t1 MTR_3g034180 31.429 175 95 4 6 171 123 281 1.26e-18 82.8
MS.gene047279.t1 MTR_3g034160 31.429 175 95 4 6 171 9 167 2.55e-18 81.3
MS.gene047279.t1 MTR_7g070440 33.333 174 102 7 9 178 10 173 1.23e-17 79.3
MS.gene047279.t1 MTR_3g014540 30.286 175 92 4 6 169 29 184 1.28e-17 79.3
MS.gene047279.t1 MTR_3g086970 40.288 139 54 6 32 170 14 123 2.45e-17 75.5
MS.gene047279.t1 MTR_4g102410 27.273 187 108 5 2 169 57 234 2.50e-17 79.0
MS.gene047279.t1 MTR_4g061340 32.749 171 96 6 6 169 26 184 3.76e-17 78.2
MS.gene047279.t1 MTR_2g021155 33.136 169 91 6 9 171 39 191 1.62e-16 77.0
MS.gene047279.t1 MTR_1g056710 32.955 176 86 7 5 169 33 187 1.96e-16 76.3
MS.gene047279.t1 MTR_3g058470 29.670 182 97 6 6 169 37 205 4.46e-16 75.1
MS.gene047279.t1 MTR_7g017040 29.775 178 100 6 6 168 16 183 5.14e-16 75.1
MS.gene047279.t1 MTR_3g014570 29.825 171 90 4 6 165 29 180 5.89e-16 74.7
MS.gene047279.t1 MTR_3g007330 30.303 165 99 4 6 167 48 199 9.66e-16 74.3
MS.gene047279.t1 MTR_6g053260 31.892 185 102 7 6 179 337 508 1.43e-15 73.9
MS.gene047279.t1 MTR_5g046300 31.977 172 94 7 6 169 4 160 1.46e-15 73.6
MS.gene047279.t1 MTR_5g046290 31.977 172 94 7 6 169 4 160 1.46e-15 73.6
MS.gene047279.t1 MTR_3g006670 31.214 173 96 4 6 169 49 207 2.06e-15 73.2
MS.gene047279.t1 MTR_3g058440 28.889 180 100 6 5 169 34 200 4.10e-15 72.0
MS.gene047279.t1 MTR_2g022000 28.866 194 99 7 2 168 12 193 4.13e-15 72.4
MS.gene047279.t1 MTR_4g080200 30.120 166 98 4 5 169 2 150 5.18e-15 72.0
MS.gene047279.t1 MTR_5g069760 32.143 140 74 2 1 126 1 133 5.57e-15 72.0
MS.gene047279.t1 MTR_3g058480 27.222 180 104 5 6 169 39 207 7.33e-15 71.2
MS.gene047279.t1 MTR_8g073550 28.571 175 98 5 6 169 30 188 8.17e-15 70.1
MS.gene047279.t1 MTR_1g055070 31.148 183 96 7 5 169 48 218 1.41e-14 70.9
MS.gene047279.t1 MTR_8g039500 27.684 177 106 4 2 168 8 172 2.55e-14 70.1
MS.gene047279.t1 MTR_7g078900 31.937 191 94 9 9 172 15 196 2.56e-14 70.1
MS.gene047279.t1 MTR_7g077070 31.217 189 93 7 6 167 16 194 2.82e-14 70.1
MS.gene047279.t1 MTR_4g013180 32.308 130 73 5 6 126 11 134 3.39e-14 70.1
MS.gene047279.t1 MTR_5g097220 29.474 190 99 9 2 168 9 186 3.88e-14 69.7
MS.gene047279.t1 MTR_3g009310 31.073 177 94 5 6 169 42 203 4.46e-14 69.3
MS.gene047279.t1 MTR_8g013010 28.161 174 102 5 6 170 54 213 4.73e-14 68.9
MS.gene047279.t1 MTR_3g007410 33.929 168 92 9 9 169 55 210 4.90e-14 69.3
MS.gene047279.t1 MTR_1g029650 32.867 143 70 5 6 125 8 147 6.42e-14 68.9
MS.gene047279.t1 MTR_2g021190 32.955 176 87 8 6 169 21 177 7.04e-14 68.9
MS.gene047279.t1 MTR_2g029990 30.857 175 92 7 7 169 52 209 7.56e-14 68.9
MS.gene047279.t1 MTR_3g024040 33.537 164 84 8 12 169 37 181 8.72e-14 68.6
MS.gene047279.t1 MTR_5g097330 25.806 186 116 5 2 168 12 194 8.81e-14 68.6
MS.gene047279.t1 MTR_3g036290 30.337 178 88 7 6 169 22 177 9.12e-14 68.6
MS.gene047279.t1 MTR_6g053240 29.688 192 102 8 6 179 28 204 1.21e-13 68.2
MS.gene047279.t1 MTR_8g062660 30.159 189 104 7 6 175 22 201 1.41e-13 68.2
MS.gene047279.t1 MTR_6g065980 30.636 173 93 5 6 170 16 169 1.68e-13 67.8
MS.gene047279.t1 MTR_5g057643 34.857 175 89 7 6 169 46 206 1.75e-13 67.0
MS.gene047279.t1 MTR_4g024890 28.090 178 101 6 1 167 5 166 1.78e-13 67.8
MS.gene047279.t1 MTR_5g007610 29.714 175 101 6 6 169 41 204 1.89e-13 67.8
MS.gene047279.t1 MTR_2g065860 29.348 184 101 8 6 168 12 187 2.33e-13 67.4
MS.gene047279.t1 MTR_5g057790 34.857 175 89 7 6 169 46 206 2.37e-13 67.4
MS.gene047279.t1 MTR_3g011100 30.682 176 96 8 6 169 235 396 2.46e-13 67.4
MS.gene047279.t1 MTR_4g030830 28.652 178 94 7 6 167 9 169 2.65e-13 67.4
MS.gene047279.t1 MTR_5g096630 30.055 183 100 9 6 169 18 191 2.77e-13 67.4
MS.gene047279.t1 MTR_3g007360 30.723 166 100 6 9 169 55 210 2.89e-13 67.0
MS.gene047279.t1 MTR_7g078840 35.172 145 68 5 6 126 10 152 3.54e-13 67.0
MS.gene047279.t1 MTR_4g129190 29.050 179 103 5 1 167 1 167 3.58e-13 67.0
MS.gene047279.t1 MTR_5g057710 31.111 180 89 6 6 169 46 206 3.66e-13 67.0
MS.gene047279.t1 MTR_6g086825 27.778 198 112 6 1 177 65 252 3.85e-13 67.0
MS.gene047279.t1 MTR_4g019990 28.804 184 99 7 1 167 1 169 4.42e-13 66.6
MS.gene047279.t1 MTR_6g465360 30.851 188 96 8 6 168 62 240 4.82e-13 65.9
MS.gene047279.t1 MTR_3g083640 30.939 181 97 6 6 173 55 220 4.90e-13 66.6
MS.gene047279.t1 MTR_2g021800 26.943 193 105 5 2 168 12 194 5.24e-13 66.6
MS.gene047279.t1 MTR_5g011200 32.796 186 85 10 3 169 14 178 5.54e-13 66.2
MS.gene047279.t1 MTR_2g021252 28.736 174 91 6 9 169 50 203 5.98e-13 66.2
MS.gene047279.t1 MTR_4g031770 29.379 177 89 7 5 170 3 154 6.37e-13 66.2
MS.gene047279.t1 MTR_3g013770 29.609 179 85 6 6 165 33 189 9.05e-13 65.9
MS.gene047279.t1 MTR_7g016930 26.316 171 107 5 2 168 12 167 9.40e-13 65.5
MS.gene047279.t1 MTR_7g079160 31.188 202 92 8 6 167 8 202 9.99e-13 65.9
MS.gene047279.t1 MTR_4g023090 31.638 177 99 6 6 174 16 178 1.07e-12 65.5
MS.gene047279.t1 MTR_5g069930 31.690 142 76 3 1 126 1 137 1.10e-12 65.5
MS.gene047279.t1 MTR_6g007135 28.409 176 103 5 6 169 26 190 1.31e-12 65.1
MS.gene047279.t1 MTR_8g064890 30.108 186 102 8 1 168 11 186 1.35e-12 65.1
MS.gene047279.t1 MTR_6g027910 27.222 180 106 7 9 171 12 183 1.51e-12 65.1
MS.gene047279.t1 MTR_5g046260 30.460 174 79 7 6 169 4 145 1.54e-12 64.7
MS.gene047279.t1 MTR_0267s0050 29.348 184 110 6 1 171 1 177 1.77e-12 64.7
MS.gene047279.t1 MTR_5g057040 30.556 180 90 5 6 169 46 206 1.84e-12 65.1
MS.gene047279.t1 MTR_1g015740 32.353 136 76 2 6 127 8 141 2.34e-12 64.3
MS.gene047279.t1 MTR_3g006570 29.545 176 101 7 6 172 21 182 3.04e-12 64.3
MS.gene047279.t1 MTR_4g116330 29.121 182 95 6 2 170 19 179 3.19e-12 63.9
MS.gene047279.t1 MTR_4g116330 29.121 182 95 6 2 170 19 179 3.40e-12 63.9
MS.gene047279.t1 MTR_6g070880 25.789 190 116 6 6 175 32 216 3.61e-12 63.2
MS.gene047279.t1 MTR_6g071420 25.789 190 116 6 6 175 32 216 3.61e-12 63.2
MS.gene047279.t1 MTR_8g033110 27.895 190 103 8 1 170 9 184 3.78e-12 63.9
MS.gene047279.t1 MTR_3g464470 31.214 173 96 7 2 167 3 159 4.02e-12 63.9
MS.gene047279.t1 MTR_8g467670 27.072 181 103 5 6 168 14 183 4.04e-12 63.9
MS.gene047279.t1 MTR_5g096710 28.729 181 101 8 6 171 23 190 4.31e-12 63.9
MS.gene047279.t1 MTR_3g103020 30.460 174 93 5 6 170 20 174 4.57e-12 63.5
MS.gene047279.t1 MTR_3g010430 31.522 184 101 9 6 180 36 203 5.39e-12 63.5
MS.gene047279.t1 MTR_4g014370 25.980 204 110 8 2 168 7 206 5.55e-12 63.5
MS.gene047279.t1 MTR_3g007430 27.976 168 102 6 9 169 46 201 5.99e-12 63.2
MS.gene047279.t1 MTR_7g077970 29.947 187 97 7 6 167 7 184 6.76e-12 63.2
MS.gene047279.t1 MTR_3g034130 27.684 177 99 5 6 171 9 167 7.71e-12 63.2
MS.gene047279.t1 MTR_3g011120 29.189 185 102 8 1 168 9 181 9.08e-12 62.8
MS.gene047279.t1 MTR_2g066200 27.027 185 106 5 2 168 8 181 9.22e-12 62.8
MS.gene047279.t1 MTR_7g070830 29.032 186 101 7 6 167 21 199 1.05e-11 62.8
MS.gene047279.t1 MTR_4g116340 31.138 167 92 8 6 170 36 181 1.13e-11 61.6
MS.gene047279.t1 MTR_7g066030 29.508 183 98 8 6 167 21 193 1.16e-11 62.4
MS.gene047279.t1 MTR_7g013590 31.325 166 97 7 9 170 39 191 1.22e-11 62.4
MS.gene047279.t1 MTR_3g010450 30.723 166 91 7 10 169 1 148 1.24e-11 61.6
MS.gene047279.t1 MTR_2g066150 27.429 175 101 7 6 168 12 172 1.25e-11 62.4
MS.gene047279.t1 MTR_6g017270 28.492 179 97 6 6 167 9 173 1.36e-11 62.0
MS.gene047279.t1 MTR_4g037465 31.319 182 92 8 6 171 21 185 1.40e-11 62.4
MS.gene047279.t1 MTR_7g061060 28.261 184 99 6 6 170 13 182 1.92e-11 62.0
MS.gene047279.t1 MTR_2g021150 29.947 187 100 10 6 179 14 182 2.27e-11 61.6
MS.gene047279.t1 MTR_7g066060 30.857 175 107 4 6 169 23 194 2.32e-11 61.6
MS.gene047279.t1 MTR_3g013950 29.189 185 111 6 1 171 1 179 3.01e-11 61.2
MS.gene047279.t1 MTR_7g077990 31.429 140 72 4 6 126 17 151 3.04e-11 61.2
MS.gene047279.t1 MTR_1g055135 28.889 180 101 5 6 177 13 173 3.05e-11 61.2
MS.gene047279.t1 MTR_3g036430 30.909 165 86 6 6 170 20 156 3.08e-11 61.2
MS.gene047279.t1 MTR_3g010390 28.571 182 95 7 6 169 33 197 3.41e-11 61.2
MS.gene047279.t1 MTR_1g007410 27.222 180 104 6 6 168 22 191 4.07e-11 60.8
MS.gene047279.t1 MTR_8g464770 25.137 183 111 4 2 168 8 180 4.36e-11 60.8
MS.gene047279.t1 MTR_4g117780 27.273 165 99 4 6 164 11 160 4.37e-11 60.8
MS.gene047279.t1 MTR_4g011660 27.222 180 107 4 6 169 19 190 4.51e-11 60.8
MS.gene047279.t1 MTR_7g066010 30.556 180 100 7 6 167 21 193 4.70e-11 60.8
MS.gene047279.t1 MTR_4g109270 31.034 174 97 7 6 170 8 167 5.01e-11 60.5
MS.gene047279.t1 MTR_1g088120 34.815 135 70 4 9 127 13 145 5.03e-11 60.8
MS.gene047279.t1 MTR_0649s0020 29.714 175 102 5 6 170 11 174 5.08e-11 60.8
MS.gene047279.t1 MTR_1g071010 29.457 129 82 4 6 126 15 142 5.17e-11 60.5
MS.gene047279.t1 MTR_1g097490 30.636 173 92 8 3 165 46 200 5.44e-11 60.5
MS.gene047279.t1 MTR_2g021950 27.624 181 97 7 9 168 19 186 5.56e-11 60.5
MS.gene047279.t1 MTR_7g407070 27.568 185 96 6 6 169 32 199 6.74e-11 60.5
MS.gene047279.t1 MTR_0129s0050 28.161 174 101 7 9 168 17 180 7.00e-11 60.5
MS.gene047279.t1 MTR_7g066850 27.624 181 90 4 6 168 23 180 7.13e-11 60.5
MS.gene047279.t1 MTR_0054s0090 28.877 187 97 7 6 167 17 192 7.91e-11 60.1
MS.gene047279.t1 MTR_8g033140 23.438 192 109 6 2 170 15 191 8.72e-11 60.1
MS.gene047279.t1 MTR_8g012090 26.882 186 115 7 2 171 12 192 8.98e-11 59.7
MS.gene047279.t1 MTR_2g078900 28.492 179 95 6 6 170 33 192 9.51e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047279.t1 AT4G12560 30.357 168 98 5 6 169 4 156 1.30e-16 76.6
MS.gene047279.t1 AT4G12560 30.357 168 98 5 6 169 4 156 1.30e-16 76.6
MS.gene047279.t1 AT4G12560 30.357 168 98 5 6 169 4 156 1.30e-16 76.6
MS.gene047279.t1 AT4G22390 29.940 167 98 5 7 169 5 156 2.78e-15 73.2
MS.gene047279.t1 AT4G22390 29.940 167 98 5 7 169 5 156 3.10e-15 72.8

Find 51 sgRNAs with CRISPR-Local

Find 58 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTCGATTTGGTAGATAT+TGG 0.244692 2.1:-64079897 None:intergenic
GGATTTGTGTCGAAGGATTA+AGG 0.273818 2.1:-64079876 None:intergenic
ATGTGATGTTTACGGGTGTT+AGG 0.295789 2.1:-64080082 None:intergenic
GATGGAGAACGAGGAGTAAT+AGG 0.320641 2.1:-64080124 None:intergenic
AGGATGCCTGAGAGCAATTT+CGG 0.345910 2.1:-64080029 None:intergenic
AGCACCAACATTGCTCTTAT+CGG 0.348918 2.1:+64079974 MS.gene047279:CDS
AAGGGATAATGTGATGTTTA+CGG 0.350529 2.1:-64080090 None:intergenic
TTGAGAAATCATCTTCGATT+TGG 0.351223 2.1:-64079907 None:intergenic
GTAATAGGAAGAGGGAGAAA+AGG 0.363689 2.1:-64080109 None:intergenic
AACTGCTCCTTATGCGTTCA+CGG 0.364330 2.1:+64080154 MS.gene047279:CDS
TCCTTATGCGTTCACGGCTT+CGG 0.368899 2.1:+64080160 MS.gene047279:CDS
AGGGATAATGTGATGTTTAC+GGG 0.384452 2.1:-64080089 None:intergenic
AGTTTATAATCGCCGGATAA+AGG 0.385894 2.1:-64080190 None:intergenic
GAAGTTGTGAGAATCGATTA+TGG 0.404310 2.1:-64079819 None:intergenic
TAATAGGAAGAGGGAGAAAA+GGG 0.406280 2.1:-64080108 None:intergenic
ACCGAAGCCGTGAACGCATA+AGG 0.407096 2.1:-64080161 None:intergenic
CCAGATTGCGATTTCGTTGG+CGG 0.427544 2.1:-64080056 None:intergenic
AGCAATTTCGGCGTTGGAAA+CGG 0.434717 2.1:-64080017 None:intergenic
TGTGATGTTTACGGGTGTTA+GGG 0.440912 2.1:-64080081 None:intergenic
CCGCCAACGAAATCGCAATC+TGG 0.442067 2.1:+64080056 MS.gene047279:CDS
GCGATTTCGTTGGCGGCGTT+AGG 0.448985 2.1:-64080049 None:intergenic
GAACGAGGAGTAATAGGAAG+AGG 0.470462 2.1:-64080118 None:intergenic
AAGATCTCAGCGAGTATGTC+CGG 0.471257 2.1:-64079737 None:intergenic
CCTGAGAGCAATTTCGGCGT+TGG 0.474684 2.1:-64080023 None:intergenic
ATAAACTCCTCCGAATCTCT+TGG 0.483957 2.1:+64080206 MS.gene047279:CDS
GGCAGCCGACCGCCTTCCGC+CGG 0.491056 2.1:+64079718 MS.gene047279:CDS
GCTCTTATCGGTTCATGTAA+CGG 0.491720 2.1:+64079986 MS.gene047279:CDS
GGAAGGCGGTCGGCTGCCAT+TGG 0.496546 2.1:-64079713 None:intergenic
AACGAGGAGTAATAGGAAGA+GGG 0.510510 2.1:-64080117 None:intergenic
GAGAGACTAACCAAGAGATT+CGG 0.512216 2.1:-64080216 None:intergenic
CCAACGCCGAAATTGCTCTC+AGG 0.515843 2.1:+64080023 MS.gene047279:CDS
AAGGATTAAGGATCGATTGA+GGG 0.525994 2.1:-64079864 None:intergenic
GAAGGATTAAGGATCGATTG+AGG 0.535662 2.1:-64079865 None:intergenic
TCGGAGGAGTTTATAATCGC+CGG 0.546909 2.1:-64080197 None:intergenic
CGCGTGAAAGGGTGGTTGAG+TGG 0.547753 2.1:-64079947 None:intergenic
GTTCCAGATTGCGATTTCGT+TGG 0.549130 2.1:-64080059 None:intergenic
AAGGAGCAGTTCATGTCAGA+TGG 0.552669 2.1:-64080142 None:intergenic
TATGTCCGGCGGAAGGCGGT+CGG 0.553897 2.1:-64079723 None:intergenic
TGAACCGATAAGAGCAATGT+TGG 0.565475 2.1:-64079978 None:intergenic
TTGGTGCTGTTACGCGTGAA+AGG 0.566043 2.1:-64079959 None:intergenic
CGAGTATGTCCGGCGGAAGG+CGG 0.575156 2.1:-64079727 None:intergenic
AGATATTGGATTTGTGTCGA+AGG 0.576356 2.1:-64079883 None:intergenic
GTGGTTGAGTGGAACGGCAG+TGG 0.580674 2.1:-64079936 None:intergenic
AGACTAACCAAGAGATTCGG+AGG 0.591475 2.1:-64080213 None:intergenic
TGGTGCTGTTACGCGTGAAA+GGG 0.604289 2.1:-64079958 None:intergenic
CAGCGAGTATGTCCGGCGGA+AGG 0.611523 2.1:-64079730 None:intergenic
TGCTGTTACGCGTGAAAGGG+TGG 0.622819 2.1:-64079955 None:intergenic
GAAAGGGTGGTTGAGTGGAA+CGG 0.623756 2.1:-64079942 None:intergenic
CGGCGTTGGAAACGGCGATG+AGG 0.663369 2.1:-64080009 None:intergenic
TTCATGTCAGATGGAGAACG+AGG 0.664298 2.1:-64080133 None:intergenic
ATCTCAGCGAGTATGTCCGG+CGG 0.712333 2.1:-64079734 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGTGATTTTGAAGTTGAT+CGG - chr2.1:64079796-64079815 None:intergenic 25.0%
AAGGGATAATGTGATGTTTA+CGG - chr2.1:64080093-64080112 None:intergenic 30.0%
TTGAGAAATCATCTTCGATT+TGG - chr2.1:64079910-64079929 None:intergenic 30.0%
!! ATCTTCGATTTGGTAGATAT+TGG - chr2.1:64079900-64079919 None:intergenic 30.0%
!!! ATTTTGAAGTTGATCGGAAT+CGG - chr2.1:64079790-64079809 None:intergenic 30.0%
AAGGATTAAGGATCGATTGA+GGG - chr2.1:64079867-64079886 None:intergenic 35.0%
AGATATTGGATTTGTGTCGA+AGG - chr2.1:64079886-64079905 None:intergenic 35.0%
AGGGATAATGTGATGTTTAC+GGG - chr2.1:64080092-64080111 None:intergenic 35.0%
AGTTTATAATCGCCGGATAA+AGG - chr2.1:64080193-64080212 None:intergenic 35.0%
GAAGTTGTGAGAATCGATTA+TGG - chr2.1:64079822-64079841 None:intergenic 35.0%
TAATAGGAAGAGGGAGAAAA+GGG - chr2.1:64080111-64080130 None:intergenic 35.0%
! AAGTGATTTTACTGGTAAGC+GGG - chr2.1:64079765-64079784 None:intergenic 35.0%
! AATCGGAGAAGTGATTTTAC+TGG - chr2.1:64079773-64079792 None:intergenic 35.0%
! ATCGATTGAGGGAATTTTTG+AGG - chr2.1:64079856-64079875 None:intergenic 35.0%
! GAAGTGATTTTACTGGTAAG+CGG - chr2.1:64079766-64079785 None:intergenic 35.0%
!! TTCGGTTTTGATCCTTTATC+CGG + chr2.1:64080178-64080197 MS.gene047279:CDS 35.0%
AACGAGGAGTAATAGGAAGA+GGG - chr2.1:64080120-64080139 None:intergenic 40.0%
AGCACCAACATTGCTCTTAT+CGG + chr2.1:64079974-64079993 MS.gene047279:CDS 40.0%
ATAAACTCCTCCGAATCTCT+TGG + chr2.1:64080206-64080225 MS.gene047279:CDS 40.0%
ATGTGATGTTTACGGGTGTT+AGG - chr2.1:64080085-64080104 None:intergenic 40.0%
GAAGGATTAAGGATCGATTG+AGG - chr2.1:64079868-64079887 None:intergenic 40.0%
GAGAGACTAACCAAGAGATT+CGG - chr2.1:64080219-64080238 None:intergenic 40.0%
GGATTTGTGTCGAAGGATTA+AGG - chr2.1:64079879-64079898 None:intergenic 40.0%
GTAATAGGAAGAGGGAGAAA+AGG - chr2.1:64080112-64080131 None:intergenic 40.0%
TGAACCGATAAGAGCAATGT+TGG - chr2.1:64079981-64080000 None:intergenic 40.0%
TGTGATGTTTACGGGTGTTA+GGG - chr2.1:64080084-64080103 None:intergenic 40.0%
!! GCTCTTATCGGTTCATGTAA+CGG + chr2.1:64079986-64080005 MS.gene047279:CDS 40.0%
!!! TGAGGGAATTTTTGAGGTGA+AGG - chr2.1:64079850-64079869 None:intergenic 40.0%
AACTGCTCCTTATGCGTTCA+CGG + chr2.1:64080154-64080173 MS.gene047279:CDS 45.0%
AAGATCTCAGCGAGTATGTC+CGG - chr2.1:64079740-64079759 None:intergenic 45.0%
AAGGAGCAGTTCATGTCAGA+TGG - chr2.1:64080145-64080164 None:intergenic 45.0%
AGACTAACCAAGAGATTCGG+AGG - chr2.1:64080216-64080235 None:intergenic 45.0%
AGGATGCCTGAGAGCAATTT+CGG - chr2.1:64080032-64080051 None:intergenic 45.0%
GAACGAGGAGTAATAGGAAG+AGG - chr2.1:64080121-64080140 None:intergenic 45.0%
GATGGAGAACGAGGAGTAAT+AGG - chr2.1:64080127-64080146 None:intergenic 45.0%
GTTCCAGATTGCGATTTCGT+TGG - chr2.1:64080062-64080081 None:intergenic 45.0%
TCGGAGGAGTTTATAATCGC+CGG - chr2.1:64080200-64080219 None:intergenic 45.0%
TTCATGTCAGATGGAGAACG+AGG - chr2.1:64080136-64080155 None:intergenic 45.0%
! AGCAATTTCGGCGTTGGAAA+CGG - chr2.1:64080020-64080039 None:intergenic 45.0%
CCAGATTGCGATTTCGTTGG+CGG - chr2.1:64080059-64080078 None:intergenic 50.0%
GAAAGGGTGGTTGAGTGGAA+CGG - chr2.1:64079945-64079964 None:intergenic 50.0%
TCCTTATGCGTTCACGGCTT+CGG + chr2.1:64080160-64080179 MS.gene047279:CDS 50.0%
!! TGGTGCTGTTACGCGTGAAA+GGG - chr2.1:64079961-64079980 None:intergenic 50.0%
!! TTGGTGCTGTTACGCGTGAA+AGG - chr2.1:64079962-64079981 None:intergenic 50.0%
ACCGAAGCCGTGAACGCATA+AGG - chr2.1:64080164-64080183 None:intergenic 55.0%
ATCTCAGCGAGTATGTCCGG+CGG - chr2.1:64079737-64079756 None:intergenic 55.0%
CCAACGCCGAAATTGCTCTC+AGG + chr2.1:64080023-64080042 MS.gene047279:CDS 55.0%
CCGCCAACGAAATCGCAATC+TGG + chr2.1:64080056-64080075 MS.gene047279:CDS 55.0%
CCTGAGAGCAATTTCGGCGT+TGG - chr2.1:64080026-64080045 None:intergenic 55.0%
TGCTGTTACGCGTGAAAGGG+TGG - chr2.1:64079958-64079977 None:intergenic 55.0%
CGCGTGAAAGGGTGGTTGAG+TGG - chr2.1:64079950-64079969 None:intergenic 60.0%
GCGATTTCGTTGGCGGCGTT+AGG - chr2.1:64080052-64080071 None:intergenic 60.0%
GTGGTTGAGTGGAACGGCAG+TGG - chr2.1:64079939-64079958 None:intergenic 60.0%
CAGCGAGTATGTCCGGCGGA+AGG - chr2.1:64079733-64079752 None:intergenic 65.0%
CGAGTATGTCCGGCGGAAGG+CGG - chr2.1:64079730-64079749 None:intergenic 65.0%
TATGTCCGGCGGAAGGCGGT+CGG - chr2.1:64079726-64079745 None:intergenic 65.0%
! CGGCGTTGGAAACGGCGATG+AGG - chr2.1:64080012-64080031 None:intergenic 65.0%
! GGCAGCCGACCGCCTTCCGC+CGG + chr2.1:64079718-64079737 MS.gene047279:CDS 80.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 64079716 64080258 64079716 ID=MS.gene047279
chr2.1 mRNA 64079716 64080258 64079716 ID=MS.gene047279.t1;Parent=MS.gene047279
chr2.1 exon 64079716 64080258 64079716 ID=MS.gene047279.t1.exon1;Parent=MS.gene047279.t1
chr2.1 CDS 64079716 64080258 64079716 ID=cds.MS.gene047279.t1;Parent=MS.gene047279.t1
Gene Sequence

>MS.gene047279

ATGGCAGCCGACCGCCTTCCGCCGGACATACTCGCTGAGATCTTCTCCCGCTTACCAGTAAAATCACTTCTCCGATTCCGATCAACTTCAAAATCACTTAAATCCATAATCGATTCTCACAACTTCATCAACCTTCACCTCAAAAATTCCCTCAATCGATCCTTAATCCTTCGACACAAATCCAATATCTACCAAATCGAAGATGATTTCTCAAACTTCACCACTGCCGTTCCACTCAACCACCCTTTCACGCGTAACAGCACCAACATTGCTCTTATCGGTTCATGTAACGGCCTCATCGCCGTTTCCAACGCCGAAATTGCTCTCAGGCATCCTAACGCCGCCAACGAAATCGCAATCTGGAACCCTAACACCCGTAAACATCACATTATCCCTTTTCTCCCTCTTCCTATTACTCCTCGTTCTCCATCTGACATGAACTGCTCCTTATGCGTTCACGGCTTCGGTTTTGATCCTTTATCCGGCGATTATAAACTCCTCCGAATCTCTTGGTTAGTCTCTCCACAAAACTTTTTTTTATGA

Protein sequence

>MS.gene047279.t1

MAADRLPPDILAEIFSRLPVKSLLRFRSTSKSLKSIIDSHNFINLHLKNSLNRSLILRHKSNIYQIEDDFSNFTTAVPLNHPFTRNSTNIALIGSCNGLIAVSNAEIALRHPNAANEIAIWNPNTRKHHIIPFLPLPITPRSPSDMNCSLCVHGFGFDPLSGDYKLLRISWLVSPQNFFL