AlfalfaGEDB | MS.gene85043

M. sativa cultivar XinJiangDaYe / MS.gene85043

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85043.t1	AES87252.1	77	200	27	1	2	182	180	379	1.00E-84	322.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85043.t1	Q8GXC7	29.9	164	100	6	16	172	264	419	1.8e-08	60.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85043.t1	G7JDC4	77.0	200	27	1	2	182	180	379	7.5e-85	322.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene85043	MS.gene51207	PPI
MS.gene88774	MS.gene85043	PPI
MS.gene85043	MS.gene63657	PPI
MS.gene85043	MS.gene059157	PPI
MS.gene034686	MS.gene85043	PPI
MS.gene40982	MS.gene85043	PPI
MS.gene85043	MS.gene024004	PPI
MS.gene42452	MS.gene85043	PPI
MS.gene85043	MS.gene070462	PPI
MS.gene063414	MS.gene85043	PPI
MS.gene85043	MS.gene061240	PPI
MS.gene85043	MS.gene031590	PPI
MS.gene85043	MS.gene064086	PPI
MS.gene036662	MS.gene85043	PPI
MS.gene87563	MS.gene85043	PPI
MS.gene85043	MS.gene035234	PPI
MS.gene85043	MS.gene064090	PPI
MS.gene57526	MS.gene85043	PPI
MS.gene051820	MS.gene85043	PPI
MS.gene26957	MS.gene85043	PPI
MS.gene97996	MS.gene85043	PPI
MS.gene85043	MS.gene50332	PPI
MS.gene85043	MS.gene42447	PPI
MS.gene58320	MS.gene85043	PPI
MS.gene85043	MS.gene024979	PPI
MS.gene81242	MS.gene85043	PPI
MS.gene26101	MS.gene85043	PPI
MS.gene27283	MS.gene85043	PPI
MS.gene64203	MS.gene85043	PPI
MS.gene045140	MS.gene85043	PPI
MS.gene024004	MS.gene85043	PPI
MS.gene42444	MS.gene85043	PPI
MS.gene85043	MS.gene24826	PPI
MS.gene51202	MS.gene85043	PPI
MS.gene85043	MS.gene044425	PPI
MS.gene85043	MS.gene43790	PPI
MS.gene87562	MS.gene85043	PPI
MS.gene40904	MS.gene85043	PPI
MS.gene85043	MS.gene59637	PPI
MS.gene87569	MS.gene85043	PPI
MS.gene064104	MS.gene85043	PPI
MS.gene85043	MS.gene27022	PPI
MS.gene85043	MS.gene57530	PPI
MS.gene041491	MS.gene85043	PPI
MS.gene033443	MS.gene85043	PPI
MS.gene85043	MS.gene87585	PPI
MS.gene059096	MS.gene85043	PPI
MS.gene57528	MS.gene85043	PPI
MS.gene85043	MS.gene024009	PPI
MS.gene85043	MS.gene036599	PPI
MS.gene50297	MS.gene85043	PPI
MS.gene006711	MS.gene85043	PPI
MS.gene27285	MS.gene85043	PPI
MS.gene85043	MS.gene006705	PPI
MS.gene064091	MS.gene85043	PPI
MS.gene85043	MS.gene061241	PPI
MS.gene064112	MS.gene85043	PPI
MS.gene045476	MS.gene85043	PPI
MS.gene85043	MS.gene035237	PPI
MS.gene24208	MS.gene85043	PPI
MS.gene85043	MS.gene51188	PPI
MS.gene50307	MS.gene85043	PPI
MS.gene43796	MS.gene85043	PPI
MS.gene034690	MS.gene85043	PPI
MS.gene58785	MS.gene85043	PPI
MS.gene85043	MS.gene50309	PPI
MS.gene96407	MS.gene85043	PPI
MS.gene85043	MS.gene041394	PPI
MS.gene77857	MS.gene85043	PPI
MS.gene85043	MS.gene03060	PPI
MS.gene85043	MS.gene036664	PPI
MS.gene85043	MS.gene024011	PPI
MS.gene51191	MS.gene85043	PPI
MS.gene85043	MS.gene053257	PPI
MS.gene85043	MS.gene58241	PPI
MS.gene85043	MS.gene51201	PPI
MS.gene85043	MS.gene064109	PPI
MS.gene85043	MS.gene058696	PPI
MS.gene85043	MS.gene009893	PPI
MS.gene033430	MS.gene85043	PPI
MS.gene50298	MS.gene85043	PPI
MS.gene85043	MS.gene77704	PPI
MS.gene67687	MS.gene85043	PPI
MS.gene036583	MS.gene85043	PPI
MS.gene85043	MS.gene033083	PPI
MS.gene71159	MS.gene85043	PPI
MS.gene77858	MS.gene85043	PPI
MS.gene85043	MS.gene40886	PPI
MS.gene058692	MS.gene85043	PPI
MS.gene041392	MS.gene85043	PPI
MS.gene85043	MS.gene036663	PPI
MS.gene033083	MS.gene85043	PPI
MS.gene85043	MS.gene68580	PPI
MS.gene69309	MS.gene85043	PPI
MS.gene63658	MS.gene85043	PPI
MS.gene033081	MS.gene85043	PPI
MS.gene85043	MS.gene57525	PPI
MS.gene031591	MS.gene85043	PPI
MS.gene85043	MS.gene023996	PPI
MS.gene85043	MS.gene030114	PPI
MS.gene035262	MS.gene85043	PPI
MS.gene85043	MS.gene045473	PPI
MS.gene070461	MS.gene85043	PPI
MS.gene85043	MS.gene50301	PPI
MS.gene51199	MS.gene85043	PPI
MS.gene85043	MS.gene045474	PPI
MS.gene85043	MS.gene036558	PPI
MS.gene87559	MS.gene85043	PPI
MS.gene85043	MS.gene40984	PPI
MS.gene85043	MS.gene066623	PPI
MS.gene85043	MS.gene064108	PPI
MS.gene033431	MS.gene85043	PPI
MS.gene85043	MS.gene58317	PPI
MS.gene041475	MS.gene85043	PPI
MS.gene85043	MS.gene90742	PPI
MS.gene033441	MS.gene85043	PPI
MS.gene85043	MS.gene24212	PPI
MS.gene85043	MS.gene80610	PPI
MS.gene063826	MS.gene85043	PPI
MS.gene85043	MS.gene58240	PPI
MS.gene060367	MS.gene85043	PPI
MS.gene85043	MS.gene27284	PPI
MS.gene85043	MS.gene063472	PPI
MS.gene44892	MS.gene85043	PPI
MS.gene85043	MS.gene57717	PPI
MS.gene85043	MS.gene034680	PPI
MS.gene58239	MS.gene85043	PPI
MS.gene85043	MS.gene50327	PPI
MS.gene85043	MS.gene066626	PPI
MS.gene57531	MS.gene85043	PPI
MS.gene064111	MS.gene85043	PPI
MS.gene85043	MS.gene063474	PPI
MS.gene26829	MS.gene85043	PPI
MS.gene39262	MS.gene85043	PPI
MS.gene85043	MS.gene51190	PPI
MS.gene053256	MS.gene85043	PPI
MS.gene85043	MS.gene044426	PPI
MS.gene85043	MS.gene88416	PPI
MS.gene85043	MS.gene034681	PPI
MS.gene75875	MS.gene85043	PPI
MS.gene058694	MS.gene85043	PPI
MS.gene85043	MS.gene57532	PPI
MS.gene85043	MS.gene003076	PPI
MS.gene54049	MS.gene85043	PPI
MS.gene43789	MS.gene85043	PPI
MS.gene85043	MS.gene009892	PPI
MS.gene006710	MS.gene85043	PPI
MS.gene072177	MS.gene85043	PPI
MS.gene58722	MS.gene85043	PPI
MS.gene85043	MS.gene058669	PPI
MS.gene85043	MS.gene066120	PPI
MS.gene64001	MS.gene85043	PPI
MS.gene85043	MS.gene041489	PPI
MS.gene85043	MS.gene38220	PPI
MS.gene85043	MS.gene40986	PPI
MS.gene58312	MS.gene85043	PPI
MS.gene36704	MS.gene85043	PPI
MS.gene032970	MS.gene85043	PPI
MS.gene85043	MS.gene034688	PPI
MS.gene77856	MS.gene85043	PPI
MS.gene85043	MS.gene24213	PPI
MS.gene85043	MS.gene033440	PPI
MS.gene58313	MS.gene85043	PPI
MS.gene85043	MS.gene034677	PPI
MS.gene85043	MS.gene055694	PPI
MS.gene85043	MS.gene035238	PPI
MS.gene066622	MS.gene85043	PPI
MS.gene44887	MS.gene85043	PPI
MS.gene63655	MS.gene85043	PPI
MS.gene85043	MS.gene064114	PPI
MS.gene44883	MS.gene85043	PPI
MS.gene85043	MS.gene87584	PPI
MS.gene88780	MS.gene85043	PPI
MS.gene41046	MS.gene85043	PPI
MS.gene87588	MS.gene85043	PPI
MS.gene017412	MS.gene85043	PPI
MS.gene80884	MS.gene85043	PPI
MS.gene85043	MS.gene90743	PPI
MS.gene51192	MS.gene85043	PPI
MS.gene009883	MS.gene85043	PPI
MS.gene85043	MS.gene85454	PPI
MS.gene58317	MS.gene85043	PPI
MS.gene044563	MS.gene85043	PPI
MS.gene069075	MS.gene85043	PPI
MS.gene033427	MS.gene85043	PPI
MS.gene85043	MS.gene041391	PPI
MS.gene85043	MS.gene033443	PPI
MS.gene40985	MS.gene85043	PPI
MS.gene041474	MS.gene85043	PPI
MS.gene27020	MS.gene85043	PPI
MS.gene041388	MS.gene85043	PPI
MS.gene85043	MS.gene058701	PPI
MS.gene062698	MS.gene85043	PPI
MS.gene57536	MS.gene85043	PPI
MS.gene96126	MS.gene85043	PPI
MS.gene019503	MS.gene85043	PPI
MS.gene51208	MS.gene85043	PPI
MS.gene85043	MS.gene87554	PPI
MS.gene85043	MS.gene009891	PPI
MS.gene85043	MS.gene064083	PPI
MS.gene85043	MS.gene27051	PPI
MS.gene016524	MS.gene85043	PPI
MS.gene50304	MS.gene85043	PPI
MS.gene85043	MS.gene048193	PPI
MS.gene045475	MS.gene85043	PPI
MS.gene85043	MS.gene58783	PPI
MS.gene85043	MS.gene024420	PPI
MS.gene85043	MS.gene016220	PPI
MS.gene85043	MS.gene024008	PPI
MS.gene85043	MS.gene50337	PPI
MS.gene59943	MS.gene85043	PPI
MS.gene90744	MS.gene85043	PPI
MS.gene51204	MS.gene85043	PPI
MS.gene85043	MS.gene54541	PPI
MS.gene85043	MS.gene39265	PPI
MS.gene31587	MS.gene85043	PPI
MS.gene036557	MS.gene85043	PPI
MS.gene041393	MS.gene85043	PPI
MS.gene85043	MS.gene060368	PPI
MS.gene85043	MS.gene053299	PPI
MS.gene85043	MS.gene28758	PPI
MS.gene85043	MS.gene044429	PPI
MS.gene84698	MS.gene85043	PPI
MS.gene009891	MS.gene85043	PPI
MS.gene85043	MS.gene48221	PPI
MS.gene066641	MS.gene85043	PPI
MS.gene82082	MS.gene85043	PPI
MS.gene000038	MS.gene85043	PPI
MS.gene85043	MS.gene58319	PPI
MS.gene85043	MS.gene034762	PPI
MS.gene85043	MS.gene59943	PPI
MS.gene57535	MS.gene85043	PPI
MS.gene025887	MS.gene85043	PPI
MS.gene041470	MS.gene85043	PPI
MS.gene87200	MS.gene85043	PPI
MS.gene85043	MS.gene033442	PPI
MS.gene015089	MS.gene85043	PPI
MS.gene85043	MS.gene40878	PPI
MS.gene85043	MS.gene44428	PPI
MS.gene44885	MS.gene85043	PPI
MS.gene011679	MS.gene85043	PPI
MS.gene060370	MS.gene85043	PPI
MS.gene066635	MS.gene85043	PPI
MS.gene85043	MS.gene035235	PPI
MS.gene57533	MS.gene85043	PPI
MS.gene85043	MS.gene058703	PPI
MS.gene85043	MS.gene024000	PPI
MS.gene85043	MS.gene012215	PPI
MS.gene87586	MS.gene85043	PPI
MS.gene85043	MS.gene033079	PPI
MS.gene40887	MS.gene85043	PPI
MS.gene50339	MS.gene85043	PPI
MS.gene85043	MS.gene059101	PPI
MS.gene046958	MS.gene85043	PPI
MS.gene85043	MS.gene58316	PPI
MS.gene060366	MS.gene85043	PPI
MS.gene85043	MS.gene58321	PPI
MS.gene85043	MS.gene87564	PPI
MS.gene85043	MS.gene58315	PPI
MS.gene85043	MS.gene36595	PPI
MS.gene57529	MS.gene85043	PPI
MS.gene85043	MS.gene045140	PPI
MS.gene85043	MS.gene041473	PPI
MS.gene85043	MS.gene50311	PPI
MS.gene40902	MS.gene85043	PPI
MS.gene85043	MS.gene058989	PPI
MS.gene85043	MS.gene036556	PPI
MS.gene85043	MS.gene57538	PPI
MS.gene27051	MS.gene85043	PPI
MS.gene85043	MS.gene041468	PPI
MS.gene85043	MS.gene058693	PPI
MS.gene021553	MS.gene85043	PPI
MS.gene85043	MS.gene27319	PPI
MS.gene060368	MS.gene85043	PPI
MS.gene033875	MS.gene85043	PPI
MS.gene85043	MS.gene041395	PPI
MS.gene036582	MS.gene85043	PPI
MS.gene27021	MS.gene85043	PPI
MS.gene066620	MS.gene85043	PPI
MS.gene035236	MS.gene85043	PPI
MS.gene85043	MS.gene51189	PPI
MS.gene85043	MS.gene046958	PPI
MS.gene58781	MS.gene85043	PPI
MS.gene85043	MS.gene24286	PPI
MS.gene028390	MS.gene85043	PPI
MS.gene011106	MS.gene85043	PPI
MS.gene033440	MS.gene85043	PPI
MS.gene62398	MS.gene85043	PPI
MS.gene60027	MS.gene85043	PPI
MS.gene44886	MS.gene85043	PPI
MS.gene038756	MS.gene85043	PPI
MS.gene88776	MS.gene85043	PPI
MS.gene85043	MS.gene40988	PPI
MS.gene35068	MS.gene85043	PPI
MS.gene041390	MS.gene85043	PPI
MS.gene24286	MS.gene85043	PPI
MS.gene92376	MS.gene85043	PPI
MS.gene85043	MS.gene24173	PPI
MS.gene85043	MS.gene036584	PPI
MS.gene000035	MS.gene85043	PPI
MS.gene85043	MS.gene036662	PPI
MS.gene50329	MS.gene85043	PPI
MS.gene31637	MS.gene85043	PPI
MS.gene87573	MS.gene85043	PPI
MS.gene85043	MS.gene42451	PPI
MS.gene57537	MS.gene85043	PPI
MS.gene019504	MS.gene85043	PPI
MS.gene034762	MS.gene85043	PPI
MS.gene85043	MS.gene035261	PPI
MS.gene059156	MS.gene85043	PPI
MS.gene85043	MS.gene023999	PPI
MS.gene85043	MS.gene69307	PPI
MS.gene85043	MS.gene77858	PPI
MS.gene58716	MS.gene85043	PPI
MS.gene033444	MS.gene85043	PPI
MS.gene019505	MS.gene85043	PPI
MS.gene50306	MS.gene85043	PPI
MS.gene85043	MS.gene036581	PPI
MS.gene85043	MS.gene019507	PPI
MS.gene85043	MS.gene033431	PPI
MS.gene85043	MS.gene000036	PPI
MS.gene066639	MS.gene85043	PPI
MS.gene26949	MS.gene85043	PPI
MS.gene85043	MS.gene50320	PPI
MS.gene50309	MS.gene85043	PPI
MS.gene85043	MS.gene58314	PPI
MS.gene85043	MS.gene87557	PPI
MS.gene036760	MS.gene85043	PPI
MS.gene85043	MS.gene035263	PPI
MS.gene58311	MS.gene85043	PPI
MS.gene85043	MS.gene96406	PPI
MS.gene57527	MS.gene85043	PPI
MS.gene85043	MS.gene035262	PPI
MS.gene033432	MS.gene85043	PPI
MS.gene85043	MS.gene028390	PPI
MS.gene033426	MS.gene85043	PPI
MS.gene85043	MS.gene50336	PPI
MS.gene59639	MS.gene85043	PPI
MS.gene50327	MS.gene85043	PPI
MS.gene035261	MS.gene85043	PPI
MS.gene96448	MS.gene85043	PPI
MS.gene010758	MS.gene85043	PPI
MS.gene85043	MS.gene047279	PPI
MS.gene85043	MS.gene50305	PPI
MS.gene063670	MS.gene85043	PPI
MS.gene85043	MS.gene032969	PPI
MS.gene57530	MS.gene85043	PPI
MS.gene019506	MS.gene85043	PPI
MS.gene85043	MS.gene68890	PPI
MS.gene50326	MS.gene85043	PPI
MS.gene51200	MS.gene85043	PPI
MS.gene85043	MS.gene42445	PPI
MS.gene85043	MS.gene86273	PPI
MS.gene85043	MS.gene67501	PPI
MS.gene85043	MS.gene26830	PPI
MS.gene85043	MS.gene22715	PPI
MS.gene024002	MS.gene85043	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85043.t1	MTR_4g023380	77.000	200	27	1	2	182	180	379	2.80e-108	314
MS.gene85043.t1	MTR_4g023090	76.804	194	30	2	2	182	195	386	2.69e-101	297
MS.gene85043.t1	MTR_4g023130	73.481	181	41	4	2	181	138	312	3.65e-87	258
MS.gene85043.t1	MTR_4g023080	72.928	181	42	4	2	181	179	353	7.77e-85	254
MS.gene85043.t1	MTR_4g021785	66.484	182	53	4	2	181	179	354	9.93e-76	231
MS.gene85043.t1	MTR_4g023070	63.542	192	54	3	2	181	182	369	3.19e-75	230
MS.gene85043.t1	MTR_4g023120	61.140	193	59	3	2	182	182	370	2.09e-72	223
MS.gene85043.t1	MTR_4g116320	62.360	178	57	5	2	174	80	252	3.32e-65	201
MS.gene85043.t1	MTR_3g103020	60.221	181	64	5	4	181	202	377	8.56e-65	203
MS.gene85043.t1	MTR_6g060650	57.377	183	68	5	2	181	197	372	1.42e-64	203
MS.gene85043.t1	MTR_4g023150	61.538	182	63	5	2	180	181	358	1.13e-63	200
MS.gene85043.t1	MTR_4g023200	60.440	182	65	5	2	180	181	358	1.33e-62	197
MS.gene85043.t1	MTR_4g023440	58.564	181	33	3	2	182	194	332	5.14e-62	195
MS.gene85043.t1	MTR_4g023190	60.989	182	63	6	2	180	181	357	1.31e-61	195
MS.gene85043.t1	MTR_4g116330	57.297	185	69	5	2	181	200	379	1.07e-59	191
MS.gene85043.t1	MTR_4g117720	57.143	189	66	6	2	181	195	377	6.46e-59	188
MS.gene85043.t1	MTR_4g109270	59.639	166	60	4	18	181	203	363	3.05e-58	186
MS.gene85043.t1	MTR_4g109280	53.763	186	72	6	2	181	181	358	6.38e-57	182
MS.gene85043.t1	MTR_8g040935	57.647	170	61	5	18	181	43	207	6.27e-56	176
MS.gene85043.t1	MTR_3g034180	58.788	165	58	5	20	182	333	489	8.31e-55	181
MS.gene85043.t1	MTR_8g433030	57.386	176	67	6	3	174	165	336	2.21e-54	176
MS.gene85043.t1	MTR_8g032390	57.386	176	67	6	3	174	198	369	7.31e-54	175
MS.gene85043.t1	MTR_4g117770	55.978	184	73	5	3	182	188	367	1.09e-52	172
MS.gene85043.t1	MTR_4g117810	55.978	184	73	5	3	182	188	367	1.09e-52	172
MS.gene85043.t1	MTR_4g094365	54.645	183	74	6	2	179	185	363	3.53e-52	171
MS.gene85043.t1	MTR_6g463430	52.432	185	75	5	2	182	27	202	4.75e-52	165
MS.gene85043.t1	MTR_4g117850	54.301	186	71	6	2	179	197	376	1.03e-51	170
MS.gene85043.t1	MTR_4g122850	54.098	183	73	7	5	181	188	365	1.22e-51	170
MS.gene85043.t1	MTR_3g034160	55.367	177	69	5	9	182	206	375	8.18e-51	167
MS.gene85043.t1	MTR_4g117780	54.348	184	76	5	3	182	188	367	3.54e-50	166
MS.gene85043.t1	MTR_8g433040	55.152	165	58	5	18	182	216	364	1.85e-49	164
MS.gene85043.t1	MTR_8g032380	55.152	165	58	5	18	182	216	364	1.85e-49	164
MS.gene85043.t1	MTR_5g070130	54.938	162	68	3	22	181	218	376	2.12e-49	164
MS.gene85043.t1	MTR_3g034130	54.140	157	65	3	7	161	204	355	2.72e-49	163
MS.gene85043.t1	MTR_4g118380	53.374	163	63	3	2	155	199	357	8.93e-49	162
MS.gene85043.t1	MTR_1g055175	48.352	182	77	7	4	181	32	200	1.94e-47	154
MS.gene85043.t1	MTR_5g070088	53.374	163	71	3	22	182	227	386	3.30e-46	155
MS.gene85043.t1	MTR_1g055195	53.846	156	63	4	22	174	323	472	5.87e-46	157
MS.gene85043.t1	MTR_5g097210	55.280	161	62	5	17	174	204	357	1.13e-45	154
MS.gene85043.t1	MTR_1g055165	48.619	181	76	7	5	181	150	317	1.91e-45	152
MS.gene85043.t1	MTR_4g118400	48.295	176	71	3	2	174	136	294	2.76e-43	146
MS.gene85043.t1	MTR_1g055135	47.458	177	77	5	4	174	203	369	3.71e-43	147
MS.gene85043.t1	MTR_5g070080	51.892	185	78	7	2	181	207	385	6.94e-43	147
MS.gene85043.t1	MTR_4g117870	58.955	134	46	5	51	182	141	267	9.57e-43	144
MS.gene85043.t1	MTR_1g055250	47.945	146	69	4	22	167	115	253	1.39e-37	132
MS.gene85043.t1	MTR_4g116330	45.405	185	52	5	2	181	200	340	5.09e-37	130
MS.gene85043.t1	MTR_7g079370	44.505	182	85	6	2	174	176	350	2.03e-36	129
MS.gene85043.t1	MTR_4g117750	47.849	186	78	7	2	174	174	353	1.12e-35	130
MS.gene85043.t1	MTR_4g117750	51.852	135	52	4	54	178	350	481	1.24e-29	113
MS.gene85043.t1	MTR_5g023000	64.646	99	31	2	85	181	2	98	1.57e-35	120
MS.gene85043.t1	MTR_4g118370	45.000	180	68	8	2	174	99	254	1.74e-35	125
MS.gene85043.t1	MTR_4g118360	54.887	133	47	6	54	181	1	125	2.24e-35	120
MS.gene85043.t1	MTR_4g117530	42.541	181	67	5	2	181	108	252	4.01e-32	116
MS.gene85043.t1	MTR_7g079400	45.294	170	77	6	18	178	173	335	5.40e-31	115
MS.gene85043.t1	MTR_4g023430	66.265	83	21	2	105	182	142	222	3.33e-29	107
MS.gene85043.t1	MTR_4g121580	42.442	172	63	7	3	170	200	339	4.62e-29	110
MS.gene85043.t1	MTR_8g102520	41.975	162	82	5	18	174	162	316	1.87e-28	108
MS.gene85043.t1	MTR_7g079420	43.195	169	79	7	18	178	983	1142	5.77e-27	107
MS.gene85043.t1	MTR_4g122860	42.373	177	66	7	5	174	167	314	1.54e-26	103
MS.gene85043.t1	MTR_7g079450	45.652	138	63	4	40	174	3	131	3.02e-26	97.8
MS.gene85043.t1	MTR_8g098830	40.625	160	83	6	18	175	67	216	7.03e-26	99.4
MS.gene85043.t1	MTR_4g114700	52.294	109	46	2	80	182	122	230	1.79e-23	93.2
MS.gene85043.t1	MTR_4g023100	76.271	59	12	1	124	182	63	119	6.53e-23	88.6
MS.gene85043.t1	MTR_7g117720	60.465	86	28	2	95	174	186	271	1.47e-21	89.0
MS.gene85043.t1	MTR_2g048580	35.404	161	86	5	18	174	190	336	4.27e-20	85.9
MS.gene85043.t1	MTR_4g122840	39.416	137	44	4	45	179	164	263	1.87e-17	77.8
MS.gene85043.t1	MTR_4g117430	50.617	81	39	1	2	82	76	155	3.18e-17	75.1
MS.gene85043.t1	MTR_8g013005	60.345	58	19	2	126	181	3	58	9.75e-14	63.2
MS.gene85043.t1	MTR_1g055145	48.052	77	35	2	22	98	131	202	2.97e-13	66.6
MS.gene85043.t1	MTR_4g109290	60.714	56	18	2	128	181	134	187	1.66e-12	63.2
MS.gene85043.t1	MTR_8g013010	46.341	82	32	3	2	79	236	309	9.53e-12	62.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 46 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CATTGTTGCCTTTGATTTAA+TGG	0.113056	4.2:+67733640	MS.gene85043:CDS
CATTCTGGTTTGTGGGTATT+TGG	0.171406	4.2:+67733719	MS.gene85043:CDS
AGAAAAGGGTTGCTATTTAA+TGG	0.226317	4.2:+67733572	MS.gene85043:CDS
TTGGAGAATTTCTCAGTATA+TGG	0.239627	4.2:+67733738	MS.gene85043:CDS
TTGGCTTTGCGTCGTAATTT+AGG	0.260116	4.2:+67733608	MS.gene85043:CDS
ATGATAAAGGACAGTTATTA+AGG	0.300794	4.2:+67733954	MS.gene85043:CDS
GAAAAGGGTTGCTATTTAAT+GGG	0.312663	4.2:+67733573	MS.gene85043:CDS
ATAATGATACAGTTGAAATA+TGG	0.320851	4.2:+67733780	MS.gene85043:CDS
CACAAAGCATTGGTACATTC+TGG	0.326889	4.2:+67733704	MS.gene85043:CDS
TATTTAATGGGGCTATTCAT+TGG	0.360740	4.2:+67733585	MS.gene85043:CDS
GCTTTGTGGTCAACATCATT+TGG	0.369346	4.2:-67733689	None:intergenic
GTCATCCCTTCTCGCAGAAA+AGG	0.395590	4.2:+67733557	MS.gene85043:CDS
TGGAGAATTTCTCAGTATAT+GGG	0.402920	4.2:+67733739	MS.gene85043:CDS
CATTGGTACATTCTGGTTTG+TGG	0.418702	4.2:+67733711	MS.gene85043:CDS
ATTGGTACATTCTGGTTTGT+GGG	0.430276	4.2:+67733712	MS.gene85043:CDS
CGAGAAGGGATGACAACATA+AGG	0.430786	4.2:-67733548	None:intergenic
TAATGGGGCTATTCATTGGT+TGG	0.433983	4.2:+67733589	MS.gene85043:CDS
AATACAAAGTGCATTCATCT+TGG	0.438377	4.2:+67733813	MS.gene85043:CDS
TGCTTGTTGTCACCAGGGAC+AGG	0.438679	4.2:-67734040	None:intergenic
CTGCTTTCACTCCCTGTCCC+TGG	0.445586	4.2:+67734028	MS.gene85043:CDS
ATCCGAAGTTGTCATGTATA+CGG	0.460650	4.2:+67734000	MS.gene85043:CDS
TTTCCTTTCCATTAAATCAA+AGG	0.474723	4.2:-67733648	None:intergenic
TAAATTTGCTTGTTGTCACC+AGG	0.478700	4.2:-67734046	None:intergenic
CAGAATGTACCAATGCTTTG+TGG	0.480428	4.2:-67733703	None:intergenic
TTGGTGAAGTATAATGATAA+AGG	0.492510	4.2:+67733941	MS.gene85043:CDS
AAGAAATCGTGGTACTAGAT+TGG	0.508666	4.2:+67733922	MS.gene85043:CDS
TCATCCCTTCTCGCAGAAAA+GGG	0.509731	4.2:+67733558	MS.gene85043:CDS
ATTTCTCAGTATATGGGCCA+TGG	0.520677	4.2:+67733745	MS.gene85043:CDS
TGGTCAACATCATTTGGAAG+AGG	0.521206	4.2:-67733683	None:intergenic
TAATGATACAGTTGAAATAT+GGG	0.533072	4.2:+67733781	MS.gene85043:CDS
TTGCCTTTGATTTAATGGAA+AGG	0.533360	4.2:+67733645	MS.gene85043:CDS
TTGAAAGTAATGATCATGAA+TGG	0.538193	4.2:-67733864	None:intergenic
GCTTGTTGTCACCAGGGACA+GGG	0.550530	4.2:-67734039	None:intergenic
ATTATCATTATCATAATCCA+TGG	0.571255	4.2:-67733762	None:intergenic
AGGGATGACAACATAAGGGA+AGG	0.583508	4.2:-67733543	None:intergenic
TGATGTTGACCACAAAGCAT+TGG	0.583728	4.2:+67733694	MS.gene85043:CDS
GAGAAGGGATGACAACATAA+GGG	0.592203	4.2:-67733547	None:intergenic
GGGATGACAACATAAGGGAA+GGG	0.603054	4.2:-67733542	None:intergenic
AAAAGGGTTGCTATTTAATG+GGG	0.619929	4.2:+67733574	MS.gene85043:CDS
AAATTTGCTTGTTGTCACCA+GGG	0.627879	4.2:-67734045	None:intergenic
ATAATACATGAAAGAAACTG+AGG	0.634313	4.2:+67733514	None:intergenic
CTCCGTATACATGACAACTT+CGG	0.636118	4.2:-67734002	None:intergenic
GTATACATGACAACTTCGGA+TGG	0.641195	4.2:-67733998	None:intergenic
TTCGGATGGACTATTACAGA+AGG	0.644435	4.2:-67733984	None:intergenic
GATATTGTTGGAAGAAATCG+TGG	0.669142	4.2:+67733911	MS.gene85043:CDS
TAATACATGAAAGAAACTGA+GGG	0.684928	4.2:+67733515	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAATGATACAGTTGAAATA+TGG	+	chr4.2:67733780-67733799	MS.gene85043:CDS	20.0%
!!	ATTATCATTATCATAATCCA+TGG	-	chr4.2:67733765-67733784	None:intergenic	20.0%
!!	TAATGATACAGTTGAAATAT+GGG	+	chr4.2:67733781-67733800	MS.gene85043:CDS	20.0%
!	ATGATAAAGGACAGTTATTA+AGG	+	chr4.2:67733954-67733973	MS.gene85043:CDS	25.0%
!	CCTATACATTCTACAAAAAT+TGG	+	chr4.2:67733887-67733906	MS.gene85043:CDS	25.0%
!	TTGAAAGTAATGATCATGAA+TGG	-	chr4.2:67733867-67733886	None:intergenic	25.0%
!	TTGGTGAAGTATAATGATAA+AGG	+	chr4.2:67733941-67733960	MS.gene85043:CDS	25.0%
!	TTTCCTTTCCATTAAATCAA+AGG	-	chr4.2:67733651-67733670	None:intergenic	25.0%
!!	ACAAAAATTGGTGATATTGT+TGG	+	chr4.2:67733899-67733918	MS.gene85043:CDS	25.0%
!!	CCAATTTTTGTAGAATGTAT+AGG	-	chr4.2:67733890-67733909	None:intergenic	25.0%
	AATACAAAGTGCATTCATCT+TGG	+	chr4.2:67733813-67733832	MS.gene85043:CDS	30.0%
	TATTTAATGGGGCTATTCAT+TGG	+	chr4.2:67733585-67733604	MS.gene85043:CDS	30.0%
	TGGAGAATTTCTCAGTATAT+GGG	+	chr4.2:67733739-67733758	MS.gene85043:CDS	30.0%
	TTGGAGAATTTCTCAGTATA+TGG	+	chr4.2:67733738-67733757	MS.gene85043:CDS	30.0%
!	CATTGTTGCCTTTGATTTAA+TGG	+	chr4.2:67733640-67733659	MS.gene85043:CDS	30.0%
!	TTGCCTTTGATTTAATGGAA+AGG	+	chr4.2:67733645-67733664	MS.gene85043:CDS	30.0%
!!	AAAAGGGTTGCTATTTAATG+GGG	+	chr4.2:67733574-67733593	MS.gene85043:CDS	30.0%
!!	AGAAAAGGGTTGCTATTTAA+TGG	+	chr4.2:67733572-67733591	MS.gene85043:CDS	30.0%
!!	GAAAAGGGTTGCTATTTAAT+GGG	+	chr4.2:67733573-67733592	MS.gene85043:CDS	30.0%
	AAGAAATCGTGGTACTAGAT+TGG	+	chr4.2:67733922-67733941	MS.gene85043:CDS	35.0%
	ATCCGAAGTTGTCATGTATA+CGG	+	chr4.2:67734000-67734019	MS.gene85043:CDS	35.0%
	GATATTGTTGGAAGAAATCG+TGG	+	chr4.2:67733911-67733930	MS.gene85043:CDS	35.0%
!!	AAATTTGCTTGTTGTCACCA+GGG	-	chr4.2:67734048-67734067	None:intergenic	35.0%
!!	ATTGGTACATTCTGGTTTGT+GGG	+	chr4.2:67733712-67733731	MS.gene85043:CDS	35.0%
!!	TAAATTTGCTTGTTGTCACC+AGG	-	chr4.2:67734049-67734068	None:intergenic	35.0%
	ATTTCTCAGTATATGGGCCA+TGG	+	chr4.2:67733745-67733764	MS.gene85043:CDS	40.0%
	CAGAATGTACCAATGCTTTG+TGG	-	chr4.2:67733706-67733725	None:intergenic	40.0%
	CTCCGTATACATGACAACTT+CGG	-	chr4.2:67734005-67734024	None:intergenic	40.0%
	GAGAAGGGATGACAACATAA+GGG	-	chr4.2:67733550-67733569	None:intergenic	40.0%
	GCTTTGTGGTCAACATCATT+TGG	-	chr4.2:67733692-67733711	None:intergenic	40.0%
	GTATACATGACAACTTCGGA+TGG	-	chr4.2:67734001-67734020	None:intergenic	40.0%
	TAATGGGGCTATTCATTGGT+TGG	+	chr4.2:67733589-67733608	MS.gene85043:CDS	40.0%
	TGATGTTGACCACAAAGCAT+TGG	+	chr4.2:67733694-67733713	MS.gene85043:CDS	40.0%
	TGGTCAACATCATTTGGAAG+AGG	-	chr4.2:67733686-67733705	None:intergenic	40.0%
!!	CACAAAGCATTGGTACATTC+TGG	+	chr4.2:67733704-67733723	MS.gene85043:CDS	40.0%
!!	CATTCTGGTTTGTGGGTATT+TGG	+	chr4.2:67733719-67733738	MS.gene85043:CDS	40.0%
!!	CATTGGTACATTCTGGTTTG+TGG	+	chr4.2:67733711-67733730	MS.gene85043:CDS	40.0%
!!	TTCGGATGGACTATTACAGA+AGG	-	chr4.2:67733987-67734006	None:intergenic	40.0%
!!	TTGGCTTTGCGTCGTAATTT+AGG	+	chr4.2:67733608-67733627	MS.gene85043:CDS	40.0%
	AGGGATGACAACATAAGGGA+AGG	-	chr4.2:67733546-67733565	None:intergenic	45.0%
	CGAGAAGGGATGACAACATA+AGG	-	chr4.2:67733551-67733570	None:intergenic	45.0%
	GGGATGACAACATAAGGGAA+GGG	-	chr4.2:67733545-67733564	None:intergenic	45.0%
	TCATCCCTTCTCGCAGAAAA+GGG	+	chr4.2:67733558-67733577	MS.gene85043:CDS	45.0%
	GTCATCCCTTCTCGCAGAAA+AGG	+	chr4.2:67733557-67733576	MS.gene85043:CDS	50.0%
!	AGCAACCCTTTTCTGCGAGA+AGG	-	chr4.2:67733566-67733585	None:intergenic	50.0%
!	GCAACCCTTTTCTGCGAGAA+GGG	-	chr4.2:67733565-67733584	None:intergenic	50.0%
!!	GCTTGTTGTCACCAGGGACA+GGG	-	chr4.2:67734042-67734061	None:intergenic	55.0%
!!	TGCTTGTTGTCACCAGGGAC+AGG	-	chr4.2:67734043-67734062	None:intergenic	55.0%
	CTGCTTTCACTCCCTGTCCC+TGG	+	chr4.2:67734028-67734047	MS.gene85043:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	67733521	67734069	67733521	ID=MS.gene85043
chr4.2	mRNA	67733521	67734069	67733521	ID=MS.gene85043.t1;Parent=MS.gene85043
chr4.2	exon	67733521	67734069	67733521	ID=MS.gene85043.t1.exon1;Parent=MS.gene85043.t1
chr4.2	CDS	67733521	67734069	67733521	ID=cds.MS.gene85043.t1;Parent=MS.gene85043.t1

Gene Sequence

>MS.gene85043

ATGAAAGAAACTGAGGGCACTCCCTTCCCTTATGTTGTCATCCCTTCTCGCAGAAAAGGGTTGCTATTTAATGGGGCTATTCATTGGTTGGCTTTGCGTCGTAATTTAGGTTTGATTGTCATTGTTGCCTTTGATTTAATGGAAAGGAAATTATTTGAGATGCCTCTTCCAAATGATGTTGACCACAAAGCATTGGTACATTCTGGTTTGTGGGTATTTGGAGAATTTCTCAGTATATGGGCCATGGATTATGATAATGATAATGATACAGTTGAAATATGGGTGATGAAAGAATACAAAGTGCATTCATCTTGGACTAAAACTCTTATTCTTTCTGTTGATGCCATTCATGATCATTACTTTCAACCTATACATTCTACAAAAATTGGTGATATTGTTGGAAGAAATCGTGGTACTAGATTGGTGAAGTATAATGATAAAGGACAGTTATTAAGGCATTGCTCCTTCTGTAATAGTCCATCCGAAGTTGTCATGTATACGGAGTCTCTGCTTTCACTCCCTGTCCCTGGTGACAACAAGCAAATTTAA

Protein sequence

>MS.gene85043.t1

MKETEGTPFPYVVIPSRRKGLLFNGAIHWLALRRNLGLIVIVAFDLMERKLFEMPLPNDVDHKALVHSGLWVFGEFLSIWAMDYDNDNDTVEIWVMKEYKVHSSWTKTLILSVDAIHDHYFQPIHSTKIGDIVGRNRGTRLVKYNDKGQLLRHCSFCNSPSEVVMYTESLLSLPVPGDNKQI