AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41046


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41046.t1 MTR_1g055165 72.727 374 45 4 8 380 1 318 0.0 518
MS.gene41046.t1 MTR_1g055135 67.277 382 93 6 14 380 11 375 7.56e-171 481
MS.gene41046.t1 MTR_5g097210 54.593 381 139 8 8 376 1 359 1.87e-128 374
MS.gene41046.t1 MTR_1g055195 60.443 316 111 8 74 380 168 478 2.94e-121 359
MS.gene41046.t1 MTR_1g055175 85.075 201 30 0 180 380 1 201 1.82e-120 347
MS.gene41046.t1 MTR_3g103020 52.356 382 144 12 15 380 19 378 7.40e-113 334
MS.gene41046.t1 MTR_4g109270 52.381 378 146 12 16 380 8 364 1.11e-112 333
MS.gene41046.t1 MTR_4g117750 53.525 383 134 9 15 379 2 358 4.68e-111 333
MS.gene41046.t1 MTR_4g117750 48.182 110 54 3 271 378 373 481 3.78e-22 98.2
MS.gene41046.t1 MTR_3g034180 48.731 394 160 10 8 379 115 488 7.81e-110 330
MS.gene41046.t1 MTR_4g109280 53.298 379 138 11 15 380 7 359 3.10e-109 324
MS.gene41046.t1 MTR_4g117850 51.058 378 142 11 14 373 21 373 1.19e-108 323
MS.gene41046.t1 MTR_4g117770 49.344 381 157 10 14 380 9 367 1.64e-105 315
MS.gene41046.t1 MTR_4g117810 49.344 381 157 10 14 380 9 367 1.64e-105 315
MS.gene41046.t1 MTR_5g070080 49.086 383 170 10 15 379 9 384 1.29e-104 313
MS.gene41046.t1 MTR_4g122850 47.568 370 161 7 27 380 12 364 1.62e-104 313
MS.gene41046.t1 MTR_4g117780 48.294 381 161 10 14 380 9 367 2.10e-103 310
MS.gene41046.t1 MTR_3g034130 49.733 374 147 10 15 366 8 362 3.89e-103 309
MS.gene41046.t1 MTR_4g094365 48.312 385 163 8 10 380 2 364 5.17e-102 306
MS.gene41046.t1 MTR_4g116330 48.052 385 165 14 10 380 17 380 1.28e-101 306
MS.gene41046.t1 MTR_6g060650 50.382 393 150 12 10 379 2 372 2.51e-101 305
MS.gene41046.t1 MTR_5g070088 46.650 403 157 11 12 378 3 383 1.61e-100 303
MS.gene41046.t1 MTR_4g023090 44.743 409 162 12 1 375 1 379 8.39e-100 301
MS.gene41046.t1 MTR_3g034160 47.980 396 160 10 8 379 1 374 8.49e-100 301
MS.gene41046.t1 MTR_5g070130 48.177 384 162 12 13 377 8 373 2.86e-98 297
MS.gene41046.t1 MTR_4g023080 47.467 375 158 11 15 379 8 353 8.60e-98 295
MS.gene41046.t1 MTR_4g021785 49.072 377 152 12 15 380 8 355 1.09e-97 295
MS.gene41046.t1 MTR_4g023070 45.063 395 158 14 16 379 3 369 3.67e-94 286
MS.gene41046.t1 MTR_8g433040 45.501 389 163 12 8 380 9 364 1.15e-93 285
MS.gene41046.t1 MTR_8g032380 45.501 389 163 12 8 380 9 364 1.15e-93 285
MS.gene41046.t1 MTR_4g117720 45.592 397 132 12 5 378 40 375 2.56e-93 284
MS.gene41046.t1 MTR_4g118380 48.138 376 138 13 10 350 2 355 2.05e-91 279
MS.gene41046.t1 MTR_4g023380 43.301 418 160 12 1 380 1 379 2.46e-91 279
MS.gene41046.t1 MTR_4g023120 43.609 399 160 13 16 380 3 370 7.63e-90 275
MS.gene41046.t1 MTR_4g118370 52.852 263 94 5 124 376 14 256 8.90e-85 258
MS.gene41046.t1 MTR_4g023190 45.767 378 162 14 15 378 9 357 1.04e-84 261
MS.gene41046.t1 MTR_4g023440 42.820 383 137 11 14 380 16 332 1.20e-82 255
MS.gene41046.t1 MTR_4g023150 45.093 377 167 15 15 378 9 358 1.43e-82 256
MS.gene41046.t1 MTR_4g023200 44.384 365 157 15 30 378 24 358 7.06e-82 254
MS.gene41046.t1 MTR_8g032390 43.557 388 151 13 8 375 31 370 3.29e-81 253
MS.gene41046.t1 MTR_4g116330 43.377 385 144 15 10 380 17 341 7.58e-79 246
MS.gene41046.t1 MTR_8g013010 48.571 280 107 8 15 280 53 309 1.08e-74 234
MS.gene41046.t1 MTR_4g023130 42.667 375 135 12 15 379 8 312 1.41e-74 234
MS.gene41046.t1 MTR_1g055250 62.562 203 59 5 167 357 49 246 1.69e-73 232
MS.gene41046.t1 MTR_8g433030 41.579 380 137 12 8 375 31 337 6.68e-69 220
MS.gene41046.t1 MTR_4g121580 42.119 387 152 16 8 370 1 339 1.91e-67 218
MS.gene41046.t1 MTR_4g118400 48.315 267 104 11 116 374 54 294 2.33e-64 207
MS.gene41046.t1 MTR_2g048580 36.533 375 200 12 10 380 2 342 2.51e-63 206
MS.gene41046.t1 MTR_4g117870 39.344 305 135 6 87 380 2 267 3.30e-62 201
MS.gene41046.t1 MTR_7g079400 43.796 274 131 8 126 380 68 337 8.37e-61 199
MS.gene41046.t1 MTR_7g079370 38.056 360 170 15 45 375 16 351 1.38e-55 186
MS.gene41046.t1 MTR_8g102520 35.079 382 166 12 15 380 7 322 1.29e-51 175
MS.gene41046.t1 MTR_8g040935 50.249 201 86 8 188 380 14 208 4.22e-48 162
MS.gene41046.t1 MTR_4g116320 47.059 221 94 7 172 377 43 255 1.21e-46 160
MS.gene41046.t1 MTR_4g117530 40.562 249 90 8 148 380 47 253 1.65e-43 152
MS.gene41046.t1 MTR_6g463430 43.662 213 106 7 170 380 2 202 5.95e-43 149
MS.gene41046.t1 MTR_4g116340 41.036 251 93 9 14 246 34 247 5.18e-39 140
MS.gene41046.t1 MTR_7g079420 38.060 268 121 11 130 380 905 1144 1.35e-37 144
MS.gene41046.t1 MTR_4g114700 36.434 258 97 8 131 370 9 217 1.34e-35 130
MS.gene41046.t1 MTR_4g117430 47.097 155 72 3 131 280 3 152 7.06e-34 123
MS.gene41046.t1 MTR_7g117720 40.000 210 77 7 15 209 9 184 5.70e-32 122
MS.gene41046.t1 MTR_7g117720 40.952 105 50 4 279 375 172 272 2.70e-14 72.8
MS.gene41046.t1 MTR_4g118360 51.562 128 57 4 256 380 1 126 8.58e-32 117
MS.gene41046.t1 MTR_1g094210 27.296 392 226 12 3 372 44 398 2.08e-30 120
MS.gene41046.t1 MTR_4g109290 41.398 186 59 7 8 189 1 140 2.43e-30 115
MS.gene41046.t1 MTR_1g068875 29.595 321 167 12 16 310 4 291 1.41e-29 117
MS.gene41046.t1 MTR_1g094210 27.174 368 211 11 3 348 44 376 3.50e-29 117
MS.gene41046.t1 MTR_2g021050 29.167 360 189 14 16 346 5 327 1.04e-28 115
MS.gene41046.t1 MTR_2g028140 29.944 354 161 15 16 313 5 327 1.41e-28 115
MS.gene41046.t1 MTR_3g036290 31.653 357 195 16 13 360 19 335 1.63e-28 114
MS.gene41046.t1 MTR_5g022420 28.875 329 201 12 4 325 15 317 2.35e-28 114
MS.gene41046.t1 MTR_2g021155 29.973 377 212 15 14 364 34 384 3.80e-28 116
MS.gene41046.t1 MTR_2g021150 28.986 345 189 13 14 330 12 328 5.97e-28 113
MS.gene41046.t1 MTR_2g028130 30.606 330 176 11 16 310 5 316 8.56e-28 113
MS.gene41046.t1 MTR_3g006670 31.210 314 166 16 14 305 47 332 2.14e-27 112
MS.gene41046.t1 MTR_1g068835 30.124 322 165 14 16 310 4 292 4.28e-27 110
MS.gene41046.t1 MTR_4g055060 31.288 326 166 13 14 311 28 323 8.63e-27 110
MS.gene41046.t1 MTR_4g070550 28.756 386 197 14 16 351 5 362 1.50e-26 109
MS.gene41046.t1 MTR_2g028110 29.919 371 188 16 16 350 4 338 2.10e-26 109
MS.gene41046.t1 MTR_2g046830 28.846 312 182 11 13 309 22 308 2.11e-26 109
MS.gene41046.t1 MTR_5g057790 30.915 317 164 15 16 309 46 330 3.11e-26 108
MS.gene41046.t1 MTR_2g021190 30.990 313 168 14 14 305 19 304 3.78e-26 108
MS.gene41046.t1 MTR_5g057020 30.464 302 160 12 16 304 46 310 3.84e-26 107
MS.gene41046.t1 MTR_3g030250 28.296 311 191 11 5 309 26 310 5.38e-26 107
MS.gene41046.t1 MTR_2g426020 27.711 415 220 17 11 377 1 383 6.60e-26 108
MS.gene41046.t1 MTR_7g056290 32.012 328 183 12 16 313 22 339 9.33e-26 107
MS.gene41046.t1 MTR_5g023000 57.292 96 37 3 287 380 6 99 1.23e-25 99.8
MS.gene41046.t1 MTR_0667s0010 29.794 339 165 14 11 309 1 306 1.30e-25 107
MS.gene41046.t1 MTR_5g057690 29.808 312 164 12 16 309 46 320 1.50e-25 106
MS.gene41046.t1 MTR_2g028160 28.571 329 184 11 16 309 5 317 2.57e-25 106
MS.gene41046.t1 MTR_2g031720 29.012 324 170 13 16 309 6 299 4.24e-25 105
MS.gene41046.t1 MTR_4g122860 30.667 225 114 7 164 379 128 319 8.73e-25 103
MS.gene41046.t1 MTR_5g069120 39.286 196 77 8 26 197 1 178 8.74e-25 100
MS.gene41046.t1 MTR_2g426060 27.826 345 174 14 11 311 1 314 9.32e-25 104
MS.gene41046.t1 MTR_8g098830 39.759 166 95 4 188 351 35 197 9.65e-25 101
MS.gene41046.t1 MTR_2g031680 28.746 327 170 13 11 309 1 292 1.02e-24 104
MS.gene41046.t1 MTR_3g072470 30.422 332 182 11 16 313 19 335 1.05e-24 104
MS.gene41046.t1 MTR_2g046920 28.803 309 186 12 13 309 21 307 1.30e-24 103
MS.gene41046.t1 MTR_6g053240 30.032 313 176 12 14 305 26 316 2.27e-24 103
MS.gene41046.t1 MTR_4g133170 26.875 320 166 12 16 305 4 285 2.60e-24 103
MS.gene41046.t1 MTR_1g068860 28.882 322 171 11 16 310 4 294 3.01e-24 103
MS.gene41046.t1 MTR_3g007330 30.225 311 175 9 14 310 46 328 3.56e-24 103
MS.gene41046.t1 MTR_2g047832 28.358 335 174 13 13 309 26 332 4.42e-24 103
MS.gene41046.t1 MTR_7g070880 26.588 425 219 14 16 372 21 420 6.50e-24 102
MS.gene41046.t1 MTR_1g097330 29.630 324 160 15 14 309 14 297 7.04e-24 102
MS.gene41046.t1 MTR_5g057710 30.818 318 163 16 16 309 46 330 7.70e-24 102
MS.gene41046.t1 MTR_1g055145 65.060 83 28 1 214 296 121 202 7.80e-24 100
MS.gene41046.t1 MTR_1g055145 52.252 111 37 2 19 129 36 130 3.22e-23 98.6
MS.gene41046.t1 MTR_7g079450 41.007 139 78 3 242 380 3 137 8.37e-24 96.3
MS.gene41046.t1 MTR_2g426090 27.513 378 207 13 11 351 1 348 8.71e-24 102
MS.gene41046.t1 MTR_6g053260 30.671 313 169 12 14 305 335 620 9.73e-24 103
MS.gene41046.t1 MTR_2g025420 26.836 354 184 13 11 314 1 329 1.06e-23 102
MS.gene41046.t1 MTR_0760s0010 31.104 299 162 14 21 306 52 319 1.07e-23 101
MS.gene41046.t1 MTR_7g056390 31.611 329 183 11 16 313 18 335 1.37e-23 101
MS.gene41046.t1 MTR_2g024110 29.338 317 166 13 16 305 4 289 1.63e-23 100
MS.gene41046.t1 MTR_7g070830 26.950 423 222 13 16 373 21 421 1.79e-23 101
MS.gene41046.t1 MTR_3g010590 28.378 296 182 10 14 305 37 306 1.88e-23 100
MS.gene41046.t1 MTR_3g011100 28.750 400 213 18 14 372 233 601 1.94e-23 102
MS.gene41046.t1 MTR_3g014540 31.348 319 166 13 14 309 27 315 2.14e-23 100
MS.gene41046.t1 MTR_3g006500 28.155 309 198 11 8 309 9 300 2.38e-23 100
MS.gene41046.t1 MTR_4g061340 28.875 329 186 13 4 310 14 316 2.64e-23 100
MS.gene41046.t1 MTR_6g065980 28.889 315 181 13 1 305 1 282 2.86e-23 100
MS.gene41046.t1 MTR_3g007410 29.275 386 205 17 19 373 55 403 3.34e-23 100
MS.gene41046.t1 MTR_3g007360 28.756 386 207 17 19 373 55 403 3.98e-23 100
MS.gene41046.t1 MTR_2g046900 28.797 316 185 13 13 309 25 319 4.13e-23 100
MS.gene41046.t1 MTR_3g009310 30.599 317 171 13 14 310 40 327 5.72e-23 99.8
MS.gene41046.t1 MTR_2g426070 28.261 368 200 13 17 347 7 347 6.76e-23 99.4
MS.gene41046.t1 MTR_2g031640 29.664 327 170 16 11 309 1 295 7.75e-23 99.0
MS.gene41046.t1 MTR_2g078900 29.560 318 179 13 4 305 21 309 8.80e-23 98.6
MS.gene41046.t1 MTR_2g021210 32.353 306 166 13 12 305 80 356 1.00e-22 99.4
MS.gene41046.t1 MTR_3g014570 31.250 320 167 15 14 310 27 316 1.06e-22 98.6
MS.gene41046.t1 MTR_3g009240 30.225 311 166 12 14 305 34 312 1.25e-22 98.6
MS.gene41046.t1 MTR_4g108820 28.247 308 150 10 14 309 40 288 1.26e-22 97.4
MS.gene41046.t1 MTR_2g425980 29.581 382 185 17 16 346 5 353 1.87e-22 98.2
MS.gene41046.t1 MTR_5g011200 30.435 368 201 18 16 361 17 351 2.70e-22 97.4
MS.gene41046.t1 MTR_8g099460 28.933 356 177 16 16 330 5 325 4.73e-22 97.1
MS.gene41046.t1 MTR_8g467140 28.616 318 173 12 15 309 31 317 4.97e-22 95.9
MS.gene41046.t1 MTR_2g055970 29.299 314 176 13 15 309 210 496 5.24e-22 98.2
MS.gene41046.t1 MTR_3g010870 30.693 303 173 13 14 305 35 311 6.63e-22 96.3
MS.gene41046.t1 MTR_8g062660 25.369 406 217 17 3 373 9 363 7.03e-22 97.8
MS.gene41046.t1 MTR_4g107820 27.059 340 163 14 4 309 29 317 7.74e-22 96.3
MS.gene41046.t1 MTR_4g107780 27.059 340 163 14 4 309 29 317 7.74e-22 96.3
MS.gene41046.t1 MTR_6g027910 29.771 393 207 20 19 372 12 374 8.16e-22 96.3
MS.gene41046.t1 MTR_4g107820 27.059 340 163 14 4 309 29 317 1.03e-21 96.3
MS.gene41046.t1 MTR_3g023930 29.766 299 167 11 14 305 32 294 1.14e-21 95.5
MS.gene41046.t1 MTR_3g007430 28.981 314 161 11 19 305 46 324 1.21e-21 95.9
MS.gene41046.t1 MTR_4g107780 27.059 340 163 14 4 309 29 317 1.21e-21 95.9
MS.gene41046.t1 MTR_1g055200 66.667 63 20 1 127 188 5 67 1.74e-21 88.6
MS.gene41046.t1 MTR_3g083010 27.317 410 237 15 11 374 1 395 1.76e-21 95.5
MS.gene41046.t1 MTR_1g061330 26.250 400 220 17 16 380 4 363 1.97e-21 95.1
MS.gene41046.t1 MTR_2g026010 27.187 320 181 10 16 309 4 297 2.22e-21 95.1
MS.gene41046.t1 MTR_2g046800 29.395 347 181 18 14 318 12 336 3.77e-21 94.4
MS.gene41046.t1 MTR_1g114700 30.769 312 175 15 14 307 27 315 4.80e-21 94.0
MS.gene41046.t1 MTR_1g097490 31.447 318 171 17 9 309 42 329 5.33e-21 94.0
MS.gene41046.t1 MTR_3g436150 32.399 321 165 17 14 305 30 327 5.91e-21 94.0
MS.gene41046.t1 MTR_1g056710 32.362 309 170 15 16 309 34 318 6.71e-21 93.6
MS.gene41046.t1 MTR_3g010970 29.452 292 175 12 19 305 51 316 8.76e-21 93.2
MS.gene41046.t1 MTR_5g007610 30.211 331 165 14 14 310 39 337 1.05e-20 93.2
MS.gene41046.t1 MTR_3g010390 30.380 316 191 13 14 310 31 336 1.12e-20 93.2
MS.gene41046.t1 MTR_8g101580 25.823 395 234 16 4 372 33 394 1.13e-20 93.2
MS.gene41046.t1 MTR_3g007270 28.528 326 178 16 14 310 45 344 1.18e-20 93.2
MS.gene41046.t1 MTR_3g010920 28.523 298 174 9 14 305 42 306 1.30e-20 92.8
MS.gene41046.t1 MTR_4g031770 28.481 316 174 14 16 309 4 289 1.59e-20 92.4
MS.gene41046.t1 MTR_3g024150 29.667 300 173 15 19 305 38 312 1.98e-20 92.0
MS.gene41046.t1 MTR_7g056003 27.177 379 225 13 18 358 17 382 2.14e-20 92.4
MS.gene41046.t1 MTR_3g083640 28.421 380 221 16 14 372 53 402 2.44e-20 92.0
MS.gene41046.t1 MTR_3g024110 27.393 303 181 11 14 305 99 373 3.21e-20 92.0
MS.gene41046.t1 MTR_4g023430 74.138 58 15 0 15 72 40 97 3.24e-20 88.6
MS.gene41046.t1 MTR_4g037465 29.805 359 192 13 9 330 14 349 3.53e-20 91.7
MS.gene41046.t1 MTR_7g407070 30.448 335 171 15 8 305 24 333 4.02e-20 91.7
MS.gene41046.t1 MTR_7g007300 30.132 302 177 12 16 309 103 378 4.12e-20 91.7
MS.gene41046.t1 MTR_3g013740 30.255 314 184 14 16 309 44 342 4.23e-20 91.7
MS.gene41046.t1 MTR_3g010430 29.022 317 168 13 14 305 34 318 4.88e-20 91.3
MS.gene41046.t1 MTR_6g080680 26.579 380 210 13 4 344 7 356 5.53e-20 90.9
MS.gene41046.t1 MTR_4g006270 27.861 402 205 17 16 378 4 359 6.33e-20 90.9
MS.gene41046.t1 MTR_1g050542 28.155 309 170 11 14 304 56 330 8.74e-20 90.5
MS.gene41046.t1 MTR_0044s0300 27.385 325 176 14 5 305 27 315 1.11e-19 90.1
MS.gene41046.t1 MTR_1g054575 27.358 318 189 10 14 317 50 339 1.16e-19 91.3
MS.gene41046.t1 MTR_7g056820 27.154 383 201 15 14 350 5 355 1.22e-19 89.7
MS.gene41046.t1 MTR_4g030830 25.728 412 240 13 8 372 1 393 1.35e-19 89.7
MS.gene41046.t1 MTR_3g036430 28.664 307 149 13 14 305 18 269 1.46e-19 89.4
MS.gene41046.t1 MTR_3g010520 27.832 309 179 14 5 305 14 286 1.52e-19 89.4
MS.gene41046.t1 MTR_3g036335 28.387 310 178 14 14 305 39 322 1.57e-19 89.7
MS.gene41046.t1 MTR_1g097560 27.298 359 203 18 5 342 25 346 1.98e-19 89.4
MS.gene41046.t1 MTR_2g029990 30.573 314 162 17 17 305 52 334 2.27e-19 89.4
MS.gene41046.t1 MTR_3g013770 30.189 318 175 14 14 309 31 323 2.61e-19 89.0
MS.gene41046.t1 MTR_0128s0020 28.012 332 195 13 8 313 10 323 2.80e-19 89.0
MS.gene41046.t1 MTR_0115s0020 25.428 409 235 17 16 375 10 397 3.00e-19 89.0
MS.gene41046.t1 MTR_7g078860 25.970 335 207 10 8 313 1 323 3.46e-19 88.6
MS.gene41046.t1 MTR_3g006570 28.710 310 176 11 14 305 19 301 5.66e-19 87.8
MS.gene41046.t1 MTR_7g055977 30.409 342 163 16 8 310 1 306 1.34e-18 86.7
MS.gene41046.t1 MTR_7g077970 28.655 342 194 13 14 317 5 334 1.46e-18 87.0
MS.gene41046.t1 MTR_6g090180 25.641 390 204 13 10 344 41 399 1.54e-18 87.0
MS.gene41046.t1 MTR_2g104340 25.971 412 220 16 15 373 13 392 1.71e-18 86.7
MS.gene41046.t1 MTR_1g115160 27.907 301 183 10 15 307 21 295 1.96e-18 86.3
MS.gene41046.t1 MTR_2g038680 24.455 413 236 12 16 373 16 407 2.14e-18 86.7
MS.gene41046.t1 MTR_3g006530 25.635 394 223 16 14 372 38 396 2.27e-18 86.3
MS.gene41046.t1 MTR_4g019990 26.098 410 238 14 11 380 1 385 5.83e-18 85.1
MS.gene41046.t1 MTR_8g073550 32.683 205 103 8 14 201 28 214 7.57e-18 82.4
MS.gene41046.t1 MTR_6g021880 28.000 300 177 10 27 305 31 312 8.96e-18 84.3
MS.gene41046.t1 MTR_4g028510 26.620 432 224 20 1 373 1 398 1.33e-17 84.3
MS.gene41046.t1 MTR_7g078040 29.240 342 199 13 8 310 1 338 1.34e-17 84.3
MS.gene41046.t1 MTR_0242s0060 29.254 335 189 12 8 307 1 322 1.60e-17 84.0
MS.gene41046.t1 MTR_0242s0040 29.254 335 189 12 8 307 1 322 1.60e-17 84.0
MS.gene41046.t1 MTR_1g088120 27.083 336 193 8 15 313 9 329 2.00e-17 83.6
MS.gene41046.t1 MTR_2g024100 26.625 323 167 12 23 305 14 306 2.09e-17 83.6
MS.gene41046.t1 MTR_5g008530 70.175 57 15 1 16 72 18 72 2.32e-17 76.3
MS.gene41046.t1 MTR_7g061060 26.994 326 180 14 13 305 10 310 2.39e-17 83.2
MS.gene41046.t1 MTR_5g069760 26.140 329 178 11 15 310 5 301 2.50e-17 82.8
MS.gene41046.t1 MTR_0128s0070 30.275 327 179 14 16 314 22 327 2.50e-17 83.2
MS.gene41046.t1 MTR_7g062100 28.829 333 176 14 16 315 24 328 2.50e-17 83.2
MS.gene41046.t1 MTR_2g461450 28.525 305 172 11 16 305 18 291 2.72e-17 82.8
MS.gene41046.t1 MTR_5g022040 25.138 362 195 13 16 311 40 391 2.97e-17 83.6
MS.gene41046.t1 MTR_0054s0090 23.892 406 243 15 15 373 16 402 3.18e-17 82.8
MS.gene41046.t1 MTR_2g025960 27.982 218 114 7 128 309 5 215 4.31e-17 81.6
MS.gene41046.t1 MTR_3g030310 27.157 313 182 13 14 305 19 306 4.44e-17 82.4
MS.gene41046.t1 MTR_3g030330 27.937 315 198 11 14 322 18 309 4.63e-17 82.0
MS.gene41046.t1 MTR_0464s0020 29.429 333 192 15 16 313 23 347 5.63e-17 82.4
MS.gene41046.t1 MTR_7g060940 27.245 323 181 9 16 307 22 321 5.84e-17 82.0
MS.gene41046.t1 MTR_1g442850 27.976 336 175 18 15 313 4 309 5.91e-17 82.0
MS.gene41046.t1 MTR_1g054725 30.097 309 177 15 15 305 19 306 6.87e-17 81.6
MS.gene41046.t1 MTR_2g021800 25.298 419 236 15 15 375 15 414 7.44e-17 82.0
MS.gene41046.t1 MTR_7g057270 28.363 342 189 13 16 320 26 348 9.39e-17 81.6
MS.gene41046.t1 MTR_3g058480 33.456 272 131 16 14 260 37 283 9.81e-17 80.9
MS.gene41046.t1 MTR_6g086825 25.298 419 226 15 11 371 65 454 1.02e-16 81.6
MS.gene41046.t1 MTR_6g048140 28.197 305 188 10 14 305 37 323 1.02e-16 81.6
MS.gene41046.t1 MTR_7g066850 24.939 409 246 14 8 372 13 404 1.22e-16 81.6
MS.gene41046.t1 MTR_6g004660 28.571 315 180 12 16 305 16 310 1.31e-16 80.9
MS.gene41046.t1 MTR_1g055375 26.774 310 188 11 19 309 7 296 1.36e-16 80.9
MS.gene41046.t1 MTR_7g066000 27.020 396 232 17 15 371 24 401 1.69e-16 80.9
MS.gene41046.t1 MTR_3g013950 27.387 398 227 17 19 374 9 386 1.79e-16 80.5
MS.gene41046.t1 MTR_5g037680 26.807 332 191 11 12 309 4 317 2.49e-16 80.5
MS.gene41046.t1 MTR_7g079640 26.415 371 226 19 4 349 1 349 2.57e-16 80.1
MS.gene41046.t1 MTR_2g043400 28.267 329 183 12 16 310 23 332 3.39e-16 80.1
MS.gene41046.t1 MTR_0129s0070 25.320 391 231 15 1 351 2 371 3.98e-16 79.7
MS.gene41046.t1 MTR_4g055820 26.893 383 199 19 1 329 1 356 4.57e-16 79.0
MS.gene41046.t1 MTR_3g009260 27.532 316 172 13 12 305 34 314 5.12e-16 79.3
MS.gene41046.t1 MTR_4g030980 24.879 414 225 17 11 358 10 403 5.76e-16 79.3
MS.gene41046.t1 MTR_5g097680 24.658 438 235 19 8 373 9 423 5.79e-16 79.3
MS.gene41046.t1 MTR_1g115185 25.745 369 217 14 14 366 37 364 6.71e-16 79.0
MS.gene41046.t1 MTR_3g010620 26.923 364 211 16 14 364 34 355 9.42e-16 78.6
MS.gene41046.t1 MTR_2g021770 27.708 397 216 17 8 351 4 382 9.90e-16 78.6
MS.gene41046.t1 MTR_2g021252 26.146 371 227 15 19 375 50 387 1.02e-15 78.2
MS.gene41046.t1 MTR_2g078850 26.948 308 173 11 19 305 33 309 1.15e-15 78.2
MS.gene41046.t1 MTR_6g013270 27.673 318 182 13 12 307 25 316 1.16e-15 78.2
MS.gene41046.t1 MTR_5g096910 25.187 401 243 19 9 373 10 389 1.46e-15 77.8
MS.gene41046.t1 MTR_7g055987 28.000 325 173 13 18 313 22 314 1.47e-15 77.8
MS.gene41046.t1 MTR_2g043410 27.778 324 202 9 16 316 22 336 1.48e-15 78.2
MS.gene41046.t1 MTR_7g061050 28.280 343 187 16 13 322 10 326 1.60e-15 77.8
MS.gene41046.t1 MTR_2g031700 28.322 286 136 14 11 264 1 249 1.64e-15 76.6
MS.gene41046.t1 MTR_0267s0050 26.954 371 214 16 19 349 9 362 1.93e-15 77.4
MS.gene41046.t1 MTR_4g033495 26.586 331 189 12 16 313 27 336 2.08e-15 77.8
MS.gene41046.t1 MTR_6g017280 27.059 340 168 16 16 310 9 313 2.13e-15 77.4
MS.gene41046.t1 MTR_1g055070 27.899 276 148 12 16 260 49 304 2.22e-15 77.4
MS.gene41046.t1 MTR_5g046260 26.685 371 185 17 14 372 2 297 2.24e-15 76.3
MS.gene41046.t1 MTR_4g013180 26.866 335 186 12 15 313 10 321 2.37e-15 77.8
MS.gene41046.t1 MTR_7g050520 27.523 327 166 13 15 305 21 312 2.69e-15 77.0
MS.gene41046.t1 MTR_7g056760 29.042 334 185 16 9 307 15 331 2.72e-15 77.0
MS.gene41046.t1 MTR_4g024890 27.019 322 179 15 15 305 9 305 4.12e-15 76.6
MS.gene41046.t1 MTR_5g096710 28.972 321 174 10 16 305 23 320 4.39e-15 76.6
MS.gene41046.t1 MTR_7g055930 25.986 431 226 19 16 372 13 424 4.60e-15 76.6
MS.gene41046.t1 MTR_4g129190 26.567 335 179 12 16 310 6 313 4.81e-15 76.3
MS.gene41046.t1 MTR_2g047200 27.246 334 194 13 16 319 20 334 5.10e-15 76.3
MS.gene41046.t1 MTR_5g068040 26.647 334 167 12 16 313 16 307 5.51e-15 76.3
MS.gene41046.t1 MTR_5g069930 26.994 326 184 11 15 310 5 306 8.16e-15 75.5
MS.gene41046.t1 MTR_7g066840 24.103 390 248 13 16 372 23 397 8.38e-15 75.9
MS.gene41046.t1 MTR_6g461660 26.012 346 192 15 7 308 10 335 9.10e-15 75.5
MS.gene41046.t1 MTR_5g022045 26.254 339 184 13 16 311 35 350 9.36e-15 75.9
MS.gene41046.t1 MTR_7g055870 25.694 432 226 17 16 372 13 424 1.17e-14 75.5
MS.gene41046.t1 MTR_5g057643 30.392 204 110 8 16 204 46 232 1.21e-14 73.9
MS.gene41046.t1 MTR_4g117550 23.587 407 232 14 4 373 5 369 1.36e-14 74.7
MS.gene41046.t1 MTR_7g061090 26.444 329 196 11 15 310 21 336 1.45e-14 75.1
MS.gene41046.t1 MTR_4g129160 27.628 333 194 14 16 310 7 330 1.70e-14 74.3
MS.gene41046.t1 MTR_6g478230 25.060 415 238 17 3 371 14 401 1.72e-14 74.7
MS.gene41046.t1 MTR_3g010870 31.064 235 128 9 14 235 35 248 1.75e-14 73.9
MS.gene41046.t1 MTR_5g057040 31.220 205 107 9 16 204 46 232 1.77e-14 75.5
MS.gene41046.t1 MTR_1g071010 24.927 341 206 14 8 318 7 327 1.81e-14 74.7
MS.gene41046.t1 MTR_7g013590 27.619 315 167 12 19 305 39 320 1.83e-14 74.7
MS.gene41046.t1 MTR_1g068905 30.000 260 126 13 16 260 4 222 1.98e-14 73.9
MS.gene41046.t1 MTR_6g048120 27.885 312 186 12 14 305 34 326 2.06e-14 74.7
MS.gene41046.t1 MTR_5g048160 26.426 333 185 15 16 305 4 319 2.16e-14 74.3
MS.gene41046.t1 MTR_5g023570 36.800 125 54 5 15 137 36 137 2.83e-14 70.1
MS.gene41046.t1 MTR_5g056020 24.324 370 202 15 14 327 15 362 4.51e-14 73.9
MS.gene41046.t1 MTR_7g017130 25.074 339 185 14 16 309 18 332 4.80e-14 73.6
MS.gene41046.t1 MTR_7g079160 26.555 418 206 19 15 358 7 397 4.91e-14 73.6
MS.gene41046.t1 MTR_7g062060 25.648 347 189 12 12 310 8 333 5.47e-14 73.2
MS.gene41046.t1 MTR_7g017170 25.074 339 185 14 16 309 18 332 5.53e-14 73.2
MS.gene41046.t1 MTR_3g024040 25.000 292 193 7 22 310 37 305 6.60e-14 72.8
MS.gene41046.t1 MTR_7g070440 25.369 339 176 14 13 310 4 306 7.16e-14 72.8
MS.gene41046.t1 MTR_8g012090 26.531 343 185 17 15 329 15 318 7.50e-14 72.4
MS.gene41046.t1 MTR_3g096250 28.094 299 152 14 14 305 45 287 7.68e-14 72.4
MS.gene41046.t1 MTR_2g022000 26.542 373 199 16 15 329 15 370 7.95e-14 72.8
MS.gene41046.t1 MTR_1g055055 27.961 304 181 14 16 313 26 297 7.96e-14 72.4
MS.gene41046.t1 MTR_2g047892 28.125 320 180 17 16 305 22 321 8.00e-14 72.8
MS.gene41046.t1 MTR_7g050480 27.217 327 167 14 15 305 21 312 8.27e-14 72.8
MS.gene41046.t1 MTR_6g007135 27.070 314 190 13 16 309 26 320 8.62e-14 72.4
MS.gene41046.t1 MTR_7g066030 24.762 420 219 20 15 373 20 403 1.09e-13 72.4
MS.gene41046.t1 MTR_3g023940 24.538 379 239 17 14 372 32 383 1.10e-13 72.0
MS.gene41046.t1 MTR_4g028680 25.485 361 191 18 1 309 1 335 1.13e-13 72.4
MS.gene41046.t1 MTR_4g130330 27.461 386 190 21 12 344 3 351 1.19e-13 72.0
MS.gene41046.t1 MTR_7g091640 25.806 341 192 18 15 318 34 350 1.31e-13 72.0
MS.gene41046.t1 MTR_7g067680 29.221 308 159 16 14 305 47 311 1.32e-13 72.0
MS.gene41046.t1 MTR_8g039500 25.312 320 188 13 15 305 11 308 1.39e-13 71.6
MS.gene41046.t1 MTR_7g056170 29.437 231 101 9 15 201 74 286 1.47e-13 72.0
MS.gene41046.t1 MTR_5g027330 23.404 329 197 13 20 315 44 350 1.54e-13 72.0
MS.gene41046.t1 MTR_3g058470 30.303 231 127 9 14 222 35 253 1.58e-13 71.6
MS.gene41046.t1 MTR_4g030090 24.611 321 190 9 17 305 15 315 1.91e-13 71.6
MS.gene41046.t1 MTR_4g011660 32.065 184 103 4 16 186 19 193 2.16e-13 71.6
MS.gene41046.t1 MTR_7g052150 27.089 347 170 14 16 316 22 331 2.42e-13 71.2
MS.gene41046.t1 MTR_3g437520 27.164 335 200 13 16 313 23 350 2.72e-13 71.2
MS.gene41046.t1 MTR_1g015730 25.513 341 191 14 8 315 1 311 2.90e-13 70.9
MS.gene41046.t1 MTR_3g030350 28.339 307 178 15 14 305 33 312 2.94e-13 70.9
MS.gene41046.t1 MTR_6g046320 27.143 350 191 16 16 311 39 378 3.04e-13 71.2
MS.gene41046.t1 MTR_4g031020 24.752 404 228 17 16 358 15 403 3.29e-13 70.9
MS.gene41046.t1 MTR_2g034700 25.714 350 200 16 10 329 8 327 3.85e-13 70.5
MS.gene41046.t1 MTR_7g056260 25.776 322 193 10 16 310 14 316 4.08e-13 70.1
MS.gene41046.t1 MTR_4g028750 25.945 397 203 21 1 344 1 359 4.16e-13 70.5
MS.gene41046.t1 MTR_4g013175 27.957 372 193 14 8 324 1 352 4.17e-13 70.5
MS.gene41046.t1 MTR_7g061010 28.440 327 166 13 16 307 22 315 4.28e-13 70.5
MS.gene41046.t1 MTR_5g043160 28.529 340 179 17 18 307 52 377 4.60e-13 70.5
MS.gene41046.t1 MTR_5g022090 24.762 315 168 12 16 306 34 303 7.44e-13 69.7
MS.gene41046.t1 MTR_4g013185 26.934 349 189 15 15 313 9 341 7.65e-13 69.7
MS.gene41046.t1 MTR_5g097350 25.000 396 219 19 25 376 25 386 8.13e-13 69.7
MS.gene41046.t1 MTR_8g013005 51.667 60 28 1 321 380 1 59 8.42e-13 63.2
MS.gene41046.t1 MTR_7g078050 31.285 179 89 8 16 189 6 155 9.57e-13 67.8
MS.gene41046.t1 MTR_7g028660 27.246 334 177 14 15 310 10 315 9.85e-13 69.3
MS.gene41046.t1 MTR_7g056200 25.857 321 191 11 9 310 16 308 1.08e-12 69.3
MS.gene41046.t1 MTR_7g056503 23.724 333 192 10 15 310 20 327 1.10e-12 69.3
MS.gene41046.t1 MTR_7g035295 27.273 319 164 12 16 305 16 295 1.15e-12 69.3
MS.gene41046.t1 MTR_1g112930 25.559 313 175 15 14 304 23 299 1.38e-12 68.9
MS.gene41046.t1 MTR_2g021950 25.587 383 195 21 15 344 15 360 1.44e-12 68.9
MS.gene41046.t1 MTR_7g016930 25.826 333 176 16 15 312 15 311 1.59e-12 68.2
MS.gene41046.t1 MTR_7g050490 32.500 200 104 8 15 201 7 188 1.98e-12 65.9
MS.gene41046.t1 MTR_6g004210 27.586 319 179 12 27 309 36 338 2.25e-12 68.6
MS.gene41046.t1 MTR_7g056797 30.952 210 108 9 15 201 22 217 3.79e-12 67.8
MS.gene41046.t1 MTR_7g091630 23.754 341 203 13 15 318 31 351 5.04e-12 67.4
MS.gene41046.t1 MTR_6g055210 25.444 338 185 14 10 304 16 329 6.20e-12 67.0
MS.gene41046.t1 MTR_2g437110 27.744 328 180 16 16 310 22 325 7.08e-12 67.0
MS.gene41046.t1 MTR_2g022170 33.803 142 67 5 19 159 7 122 8.16e-12 62.8
MS.gene41046.t1 MTR_3g058440 28.906 256 134 13 16 248 35 265 9.34e-12 65.9
MS.gene41046.t1 MTR_7g078840 25.287 348 202 11 15 313 9 347 9.56e-12 66.6
MS.gene41046.t1 MTR_0129s0120 24.737 380 229 13 1 342 2 362 1.36e-11 65.9
MS.gene41046.t1 MTR_0134s0060 25.255 392 202 19 15 344 11 373 1.51e-11 65.9
MS.gene41046.t1 MTR_4g024870 26.667 255 148 8 1 235 27 262 1.51e-11 65.9
MS.gene41046.t1 MTR_3g011650 28.926 242 125 11 12 235 72 284 1.56e-11 64.7
MS.gene41046.t1 MTR_7g077070 23.143 350 206 13 3 305 4 337 1.77e-11 65.9
MS.gene41046.t1 MTR_7g078900 26.023 342 189 16 15 310 11 334 1.90e-11 65.5
MS.gene41046.t1 MTR_7g055850 30.396 227 105 11 16 202 13 226 2.05e-11 64.7
MS.gene41046.t1 MTR_1g007410 25.806 341 178 14 15 305 21 336 2.18e-11 65.5
MS.gene41046.t1 MTR_0097s0030 25.697 323 182 11 16 307 14 309 2.38e-11 65.1
MS.gene41046.t1 MTR_2g047240 25.697 323 182 11 16 307 14 309 2.38e-11 65.1
MS.gene41046.t1 MTR_3g010440 23.762 303 153 10 14 310 24 254 2.56e-11 64.7
MS.gene41046.t1 MTR_0831s0010 24.757 412 214 18 15 373 49 417 3.48e-11 64.7
MS.gene41046.t1 MTR_4g030110 24.551 334 169 13 16 310 30 319 3.49e-11 64.7
MS.gene41046.t1 MTR_3g006300 52.000 50 24 0 7 56 21 70 3.63e-11 59.7
MS.gene41046.t1 MTR_4g080200 23.416 363 212 12 16 351 3 326 6.10e-11 63.5
MS.gene41046.t1 MTR_3g009250 28.099 242 126 10 12 235 34 245 6.68e-11 62.4
MS.gene41046.t1 MTR_0627s0010 25.507 345 188 16 16 311 38 362 7.09e-11 63.9
MS.gene41046.t1 MTR_1004s0010 28.571 217 128 10 98 306 92 289 8.61e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41046.t1 AT3G06240 29.126 412 226 17 9 372 26 419 9.92e-29 116
MS.gene41046.t1 AT4G12560 27.566 341 179 14 16 319 4 313 2.62e-21 95.1
MS.gene41046.t1 AT4G12560 27.566 341 179 14 16 319 4 313 2.62e-21 95.1
MS.gene41046.t1 AT4G12560 27.566 341 179 14 16 319 4 313 2.62e-21 95.1
MS.gene41046.t1 AT3G23880 26.935 323 189 10 6 307 3 299 5.21e-20 90.9
MS.gene41046.t1 AT3G07870 27.245 323 190 9 16 312 28 331 4.58e-18 85.5
MS.gene41046.t1 AT4G22390 24.324 333 198 12 17 321 5 311 4.45e-13 70.5
MS.gene41046.t1 AT4G22390 24.324 333 198 12 17 321 5 311 5.12e-13 70.5
MS.gene41046.t1 AT3G16210 24.269 342 190 13 15 332 4 300 9.61e-13 69.3
MS.gene41046.t1 AT1G11620 25.484 310 191 16 16 309 6 291 1.16e-12 68.9
MS.gene41046.t1 AT1G47790 23.701 308 203 11 17 317 26 308 3.86e-12 67.4
MS.gene41046.t1 AT5G50220 25.538 325 177 14 16 330 33 302 5.62e-12 67.0
MS.gene41046.t1 AT3G52320 24.695 328 200 11 14 321 25 325 9.94e-12 66.2
MS.gene41046.t1 AT4G19940 23.907 343 217 11 14 330 33 357 3.63e-11 64.7
MS.gene41046.t1 AT1G12870 26.846 149 92 4 11 156 28 162 5.14e-11 64.3
MS.gene41046.t1 AT3G20710 23.028 317 200 12 16 316 6 294 9.70e-11 63.2

Find 87 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTACGGATTGTGGTTTA+TGG 0.210964 1.3:-41879098 MS.gene41046:CDS
TTCAGTTTCGTTTGATTACT+TGG 0.232400 1.3:-41879349 MS.gene41046:CDS
CCGGTAACCTCATTAGGATT+TGG 0.244803 1.3:+41879826 None:intergenic
TTAGAGGATTTCTAAGTCTA+TGG 0.269614 1.3:-41879071 MS.gene41046:CDS
GGCGGAGGTCGCGGAAATTA+TGG 0.270956 1.3:-41879889 MS.gene41046:CDS
CTTGGTCTGAAGCTTATATA+TGG 0.327845 1.3:-41879479 MS.gene41046:CDS
TGTTGTTGCATTTGATTTAG+TGG 0.338010 1.3:-41879166 MS.gene41046:CDS
ACTTAACCGGTAACCTCATT+AGG 0.342453 1.3:+41879820 None:intergenic
GAAGAGTCCTTGCTACAAAA+AGG 0.349090 1.3:+41879270 None:intergenic
CGGTAACCTCATTAGGATTT+GGG 0.350087 1.3:+41879827 None:intergenic
ACGAGGATACAGTAGATATA+TGG 0.350524 1.3:-41879038 MS.gene41046:CDS
CTCTACGGATTGTGGTTTAT+GGG 0.357070 1.3:-41879097 MS.gene41046:CDS
AAATCTATAGATCGAAATTC+AGG 0.360952 1.3:+41879627 None:intergenic
AGGTTGAAACTGTGAATTTA+CGG 0.371805 1.3:+41879677 None:intergenic
ATTTCTAAGTCTATGGGTTA+TGG 0.375932 1.3:-41879064 MS.gene41046:CDS
AAACTTAAATGTGAAGCATT+AGG 0.385926 1.3:+41879417 None:intergenic
TGTGGTTTATGGGTATTTAG+AGG 0.386481 1.3:-41879087 MS.gene41046:CDS
TATTGCAAAGATTCACGAAA+TGG 0.390999 1.3:-41878835 MS.gene41046:CDS
AGAAGATCAAAATGAGATTC+CGG 0.400161 1.3:+41879540 None:intergenic
CCAAATCCTAATGAGGTTAC+CGG 0.407232 1.3:-41879826 MS.gene41046:CDS
GTGAAGAGTGTTGGAGAGGA+AGG 0.412229 1.3:+41879657 None:intergenic
AAACTAGGTTTCAGTGGAAC+AGG 0.414275 1.3:+41879570 None:intergenic
GAGCGATAGTCAATATCATC+TGG 0.417701 1.3:+41879117 None:intergenic
TCTCATTGAGGGCTAATGAA+TGG 0.422049 1.3:-41879320 MS.gene41046:CDS
TCAGTTTCGTTTGATTACTT+GGG 0.428278 1.3:-41879348 MS.gene41046:CDS
AAACGGATAAGCGACTTAAC+CGG 0.429292 1.3:+41879807 None:intergenic
AATACAAAGTGCAGTCCTCT+TGG 0.431388 1.3:-41879005 MS.gene41046:CDS
CTCATTGAGGGCTAATGAAT+GGG 0.432737 1.3:-41879319 MS.gene41046:CDS
TAAGCTTCCTCGTCGTCACT+AGG 0.442156 1.3:+41878772 None:intergenic
TAATGTGGCTATTCACTGGT+TGG 0.443001 1.3:-41879217 MS.gene41046:CDS
ATTAAAGACTGACTCTACTA+AGG 0.447329 1.3:+41879236 None:intergenic
TCTTTAATGTGGCTATTCAC+TGG 0.447376 1.3:-41879221 MS.gene41046:CDS
TCAAAATGAGATTCCGGAAG+TGG 0.451896 1.3:+41879546 None:intergenic
CGCGGAAATTATGGCGGAGG+TGG 0.453617 1.3:-41879880 MS.gene41046:CDS
GGAAATTATGGCGGAGGTGG+CGG 0.458979 1.3:-41879877 MS.gene41046:CDS
AAGAAGCATGGCGGAGGTCG+CGG 0.462471 1.3:-41879898 None:intergenic
ATATTGTTGGAACAGATTGC+CGG 0.467153 1.3:-41878909 MS.gene41046:CDS
CGAGTCAACAGATGATTACT+TGG 0.478220 1.3:-41879376 MS.gene41046:CDS
TCAAATCCGTTTGTAAGTCA+TGG 0.484548 1.3:-41879785 MS.gene41046:CDS
GGAGTAGCGGTGAAGAGTGT+TGG 0.488300 1.3:+41879648 None:intergenic
CGAGGATACAGTAGATATAT+GGG 0.489478 1.3:-41879037 MS.gene41046:CDS
GTTGGAACAGATTGCCGGAC+TGG 0.489944 1.3:-41878904 MS.gene41046:CDS
ACTTACAAACGGATTTGAAA+CGG 0.493235 1.3:+41879790 None:intergenic
GACTATCGCTCTACGGATTG+TGG 0.494045 1.3:-41879105 MS.gene41046:CDS
ATTTGGGTGATCAATTCATC+AGG 0.495902 1.3:+41879843 None:intergenic
TAGAGGATTTCTAAGTCTAT+GGG 0.497173 1.3:-41879070 MS.gene41046:CDS
CTAATTAAAGGTTCATGTAG+AGG 0.512584 1.3:-41879519 MS.gene41046:CDS
TAATTAAAGGTTCATGTAGA+GGG 0.518546 1.3:-41879518 MS.gene41046:CDS
CAGTTTCGTTTGATTACTTG+GGG 0.518563 1.3:-41879347 MS.gene41046:CDS
GATTCCGGAAGTGGAAAACT+AGG 0.521335 1.3:+41879555 None:intergenic
ATCAATTCATCAGGTAGATA+CGG 0.532311 1.3:+41879852 None:intergenic
TACAAGGGAAACGTTATGAA+TGG 0.533084 1.3:+41878951 None:intergenic
CTTAAATGTGAAGCATTAGG+AGG 0.535227 1.3:+41879420 None:intergenic
TGTGAAGCATTAGGAGGGAA+AGG 0.535589 1.3:+41879426 None:intergenic
AGCGGTGAAGAGTGTTGGAG+AGG 0.537722 1.3:+41879653 None:intergenic
TTGCATTTGATTTAGTGGAA+AGG 0.543544 1.3:-41879161 MS.gene41046:CDS
TGTCTATGAAATCCAGTGGA+TGG 0.545801 1.3:+41879453 None:intergenic
GTCAACAGATGATTACTTGG+TGG 0.548203 1.3:-41879373 MS.gene41046:CDS
TTCACGAAATGGATTCCGAT+TGG 0.548703 1.3:-41878824 MS.gene41046:CDS
CGTATCTCACCAATCCAGTC+CGG 0.551239 1.3:+41878890 None:intergenic
AGAAAACCATGACTTACAAA+CGG 0.552831 1.3:+41879779 None:intergenic
TATATATGGAATCCATCCAC+TGG 0.557832 1.3:-41879465 MS.gene41046:CDS
TGATATTGACTATCGCTCTA+CGG 0.565866 1.3:-41879112 MS.gene41046:CDS
TTAAAGACTGACTCTACTAA+GGG 0.567275 1.3:+41879237 None:intergenic
AAGCTTCCTCGTCGTCACTA+GGG 0.568376 1.3:+41878773 None:intergenic
CGGAGGAAGAAGCATGGCGG+AGG 0.572188 1.3:-41879904 None:intergenic
AACAGATTGCCGGACTGGAT+TGG 0.572282 1.3:-41878899 MS.gene41046:CDS
ACTCTGTATACATAGCCAAT+CGG 0.573189 1.3:+41878809 None:intergenic
TGATCACCCAAATCCTAATG+AGG 0.585524 1.3:-41879833 MS.gene41046:CDS
TTGGTGAGATACGATGAGGA+AGG 0.592631 1.3:-41878880 MS.gene41046:CDS
TCTAAGTCTATGGGTTATGG+TGG 0.598732 1.3:-41879061 MS.gene41046:CDS
GGTCGCGGAAATTATGGCGG+AGG 0.601831 1.3:-41879883 MS.gene41046:CDS
CTTCTTCAACTCACACTCGT+AGG 0.606578 1.3:-41879713 MS.gene41046:CDS
AGCGATAGTCAATATCATCT+GGG 0.612843 1.3:+41879118 None:intergenic
TAGTCAATATCATCTGGGAG+AGG 0.613889 1.3:+41879123 None:intergenic
TCTATGGGTTATGGTGGACG+AGG 0.618503 1.3:-41879055 MS.gene41046:CDS
AGTAGAGTCAGTCTTTAATG+TGG 0.624796 1.3:-41879232 MS.gene41046:CDS
AGTGGAAAACTAGGTTTCAG+TGG 0.624922 1.3:+41879564 None:intergenic
TTAAATGTGAAGCATTAGGA+GGG 0.627505 1.3:+41879421 None:intergenic
AGGTTCATTATAATCATCGT+AGG 0.630185 1.3:+41879590 None:intergenic
TCATCGTAGGTAAACAATGA+CGG 0.630499 1.3:+41879603 None:intergenic
AGATCGAAATTCAGGAGTAG+CGG 0.644050 1.3:+41879635 None:intergenic
TATTTGTCTATGAAATCCAG+TGG 0.670705 1.3:+41879449 None:intergenic
GGAGGTCGCGGAAATTATGG+CGG 0.681532 1.3:-41879886 MS.gene41046:CDS
TAATGAATGGGAAGAAATCG+TGG 0.683513 1.3:-41879307 MS.gene41046:CDS
TGGATTGGTGAGATACGATG+AGG 0.700356 1.3:-41878884 MS.gene41046:CDS
TTCACTCCCTAGTGACGACG+AGG 0.713467 1.3:-41878779 MS.gene41046:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAAGTTTTTTTGGTTTT+GGG - chr1.3:41879258-41879277 MS.gene41046:CDS 15.0%
!!! CATTTAAGTTTTTTTGGTTT+TGG - chr1.3:41879257-41879276 MS.gene41046:CDS 20.0%
!!! CATTTTGATCTTCTAATTAA+AGG - chr1.3:41879131-41879150 MS.gene41046:CDS 20.0%
! AAATCTATAGATCGAAATTC+AGG + chr1.3:41879038-41879057 None:intergenic 25.0%
! TAATTAAAGGTTCATGTAGA+GGG - chr1.3:41879144-41879163 MS.gene41046:CDS 25.0%
!! AAACTTAAATGTGAAGCATT+AGG + chr1.3:41879248-41879267 None:intergenic 25.0%
!!! GCTTCACATTTAAGTTTTTT+TGG - chr1.3:41879251-41879270 MS.gene41046:CDS 25.0%
ACAAAAAGTGGTGATATTGT+TGG - chr1.3:41879740-41879759 MS.gene41046:CDS 30.0%
AGAAAACCATGACTTACAAA+CGG + chr1.3:41878886-41878905 None:intergenic 30.0%
AGAAGATCAAAATGAGATTC+CGG + chr1.3:41879125-41879144 None:intergenic 30.0%
AGGTTCATTATAATCATCGT+AGG + chr1.3:41879075-41879094 None:intergenic 30.0%
AGGTTGAAACTGTGAATTTA+CGG + chr1.3:41878988-41879007 None:intergenic 30.0%
ATCAATTCATCAGGTAGATA+CGG + chr1.3:41878813-41878832 None:intergenic 30.0%
CTAATTAAAGGTTCATGTAG+AGG - chr1.3:41879143-41879162 MS.gene41046:CDS 30.0%
TAGAGGATTTCTAAGTCTAT+GGG - chr1.3:41879592-41879611 MS.gene41046:CDS 30.0%
TATTGCAAAGATTCACGAAA+TGG - chr1.3:41879827-41879846 MS.gene41046:CDS 30.0%
TATTTGTCTATGAAATCCAG+TGG + chr1.3:41879216-41879235 None:intergenic 30.0%
TCAGTTTCGTTTGATTACTT+GGG - chr1.3:41879314-41879333 MS.gene41046:CDS 30.0%
TTAGAGGATTTCTAAGTCTA+TGG - chr1.3:41879591-41879610 MS.gene41046:CDS 30.0%
TTCAGTTTCGTTTGATTACT+TGG - chr1.3:41879313-41879332 MS.gene41046:CDS 30.0%
! ACTTACAAACGGATTTGAAA+CGG + chr1.3:41878875-41878894 None:intergenic 30.0%
! ACTTTTTGTGCAACATACAA+GGG + chr1.3:41879729-41879748 None:intergenic 30.0%
! ATTAAAGACTGACTCTACTA+AGG + chr1.3:41879429-41879448 None:intergenic 30.0%
! ATTTCTAAGTCTATGGGTTA+TGG - chr1.3:41879598-41879617 MS.gene41046:CDS 30.0%
! TGTTGTTGCATTTGATTTAG+TGG - chr1.3:41879496-41879515 MS.gene41046:CDS 30.0%
! TTAAAGACTGACTCTACTAA+GGG + chr1.3:41879428-41879447 None:intergenic 30.0%
! TTAAATGTGAAGCATTAGGA+GGG + chr1.3:41879244-41879263 None:intergenic 30.0%
! TTGCATTTGATTTAGTGGAA+AGG - chr1.3:41879501-41879520 MS.gene41046:CDS 30.0%
!! GGTTTATATTTTTGCACACT+TGG - chr1.3:41879165-41879184 MS.gene41046:CDS 30.0%
ACGAGGATACAGTAGATATA+TGG - chr1.3:41879624-41879643 MS.gene41046:CDS 35.0%
ACTCTGTATACATAGCCAAT+CGG + chr1.3:41879856-41879875 None:intergenic 35.0%
AGCGATAGTCAATATCATCT+GGG + chr1.3:41879547-41879566 None:intergenic 35.0%
AGTAGAGTCAGTCTTTAATG+TGG - chr1.3:41879430-41879449 MS.gene41046:CDS 35.0%
ATATTGTTGGAACAGATTGC+CGG - chr1.3:41879753-41879772 MS.gene41046:CDS 35.0%
ATTTGGGTGATCAATTCATC+AGG + chr1.3:41878822-41878841 None:intergenic 35.0%
CAGTTTCGTTTGATTACTTG+GGG - chr1.3:41879315-41879334 MS.gene41046:CDS 35.0%
CGAGGATACAGTAGATATAT+GGG - chr1.3:41879625-41879644 MS.gene41046:CDS 35.0%
CTTGTATGTTGCACAAAAAG+TGG - chr1.3:41879728-41879747 MS.gene41046:CDS 35.0%
TAATGAATGGGAAGAAATCG+TGG - chr1.3:41879355-41879374 MS.gene41046:CDS 35.0%
TACAAGGGAAACGTTATGAA+TGG + chr1.3:41879714-41879733 None:intergenic 35.0%
TATATATGGAATCCATCCAC+TGG - chr1.3:41879197-41879216 MS.gene41046:CDS 35.0%
TCAAATCCGTTTGTAAGTCA+TGG - chr1.3:41878877-41878896 MS.gene41046:CDS 35.0%
TCATCGTAGGTAAACAATGA+CGG + chr1.3:41879062-41879081 None:intergenic 35.0%
TCTTTAATGTGGCTATTCAC+TGG - chr1.3:41879441-41879460 MS.gene41046:CDS 35.0%
TGTGGTTTATGGGTATTTAG+AGG - chr1.3:41879575-41879594 MS.gene41046:CDS 35.0%
! CTTAAATGTGAAGCATTAGG+AGG + chr1.3:41879245-41879264 None:intergenic 35.0%
! CTTGGTCTGAAGCTTATATA+TGG - chr1.3:41879183-41879202 MS.gene41046:CDS 35.0%
! TGATATTGACTATCGCTCTA+CGG - chr1.3:41879550-41879569 MS.gene41046:CDS 35.0%
!! AACAAGAGTTTTAGTCCAAG+AGG + chr1.3:41879675-41879694 None:intergenic 35.0%
!! CACTTTTTGTGCAACATACA+AGG + chr1.3:41879730-41879749 None:intergenic 35.0%
AAACGGATAAGCGACTTAAC+CGG + chr1.3:41878858-41878877 None:intergenic 40.0%
AAACTAGGTTTCAGTGGAAC+AGG + chr1.3:41879095-41879114 None:intergenic 40.0%
AATACAAAGTGCAGTCCTCT+TGG - chr1.3:41879657-41879676 MS.gene41046:CDS 40.0%
ACTTAACCGGTAACCTCATT+AGG + chr1.3:41878845-41878864 None:intergenic 40.0%
AGATCGAAATTCAGGAGTAG+CGG + chr1.3:41879030-41879049 None:intergenic 40.0%
AGTGGAAAACTAGGTTTCAG+TGG + chr1.3:41879101-41879120 None:intergenic 40.0%
CCAAATCCTAATGAGGTTAC+CGG - chr1.3:41878836-41878855 MS.gene41046:CDS 40.0%
CCTTGCTACAAAAAGGCAAA+TGG + chr1.3:41879388-41879407 None:intergenic 40.0%
CGAGTCAACAGATGATTACT+TGG - chr1.3:41879286-41879305 MS.gene41046:CDS 40.0%
CGGTAACCTCATTAGGATTT+GGG + chr1.3:41878838-41878857 None:intergenic 40.0%
CTCATTGAGGGCTAATGAAT+GGG - chr1.3:41879343-41879362 MS.gene41046:CDS 40.0%
GAAGAGTCCTTGCTACAAAA+AGG + chr1.3:41879395-41879414 None:intergenic 40.0%
GAGCGATAGTCAATATCATC+TGG + chr1.3:41879548-41879567 None:intergenic 40.0%
GTCAACAGATGATTACTTGG+TGG - chr1.3:41879289-41879308 MS.gene41046:CDS 40.0%
TAATGTGGCTATTCACTGGT+TGG - chr1.3:41879445-41879464 MS.gene41046:CDS 40.0%
TAGTCAATATCATCTGGGAG+AGG + chr1.3:41879542-41879561 None:intergenic 40.0%
TCAAAATGAGATTCCGGAAG+TGG + chr1.3:41879119-41879138 None:intergenic 40.0%
TCTCATTGAGGGCTAATGAA+TGG - chr1.3:41879342-41879361 MS.gene41046:CDS 40.0%
TGATCACCCAAATCCTAATG+AGG - chr1.3:41878829-41878848 MS.gene41046:CDS 40.0%
TGTCTATGAAATCCAGTGGA+TGG + chr1.3:41879212-41879231 None:intergenic 40.0%
! ACTTGGGGTTTTTCTCATTG+AGG - chr1.3:41879330-41879349 MS.gene41046:CDS 40.0%
! CCATTTGCCTTTTTGTAGCA+AGG - chr1.3:41879385-41879404 MS.gene41046:CDS 40.0%
! CTCTACGGATTGTGGTTTAT+GGG - chr1.3:41879565-41879584 MS.gene41046:CDS 40.0%
! CTTGGGGTTTTTCTCATTGA+GGG - chr1.3:41879331-41879350 MS.gene41046:CDS 40.0%
! TCTAAGTCTATGGGTTATGG+TGG - chr1.3:41879601-41879620 MS.gene41046:CDS 40.0%
! TTCACGAAATGGATTCCGAT+TGG - chr1.3:41879838-41879857 MS.gene41046:CDS 40.0%
!! GAAACCTAGTTTTCCACTTC+CGG - chr1.3:41879103-41879122 MS.gene41046:CDS 40.0%
CCGGTAACCTCATTAGGATT+TGG + chr1.3:41878839-41878858 None:intergenic 45.0%
CTTCTTCAACTCACACTCGT+AGG - chr1.3:41878949-41878968 MS.gene41046:CDS 45.0%
GATTCCGGAAGTGGAAAACT+AGG + chr1.3:41879110-41879129 None:intergenic 45.0%
TTGGTGAGATACGATGAGGA+AGG - chr1.3:41879782-41879801 MS.gene41046:CDS 45.0%
! GCTCTACGGATTGTGGTTTA+TGG - chr1.3:41879564-41879583 MS.gene41046:CDS 45.0%
! TGTGAAGCATTAGGAGGGAA+AGG + chr1.3:41879239-41879258 None:intergenic 45.0%
!! TGGATTGGTGAGATACGATG+AGG - chr1.3:41879778-41879797 MS.gene41046:CDS 45.0%
AAGCTTCCTCGTCGTCACTA+GGG + chr1.3:41879892-41879911 None:intergenic 50.0%
CGTATCTCACCAATCCAGTC+CGG + chr1.3:41879775-41879794 None:intergenic 50.0%
TAAGCTTCCTCGTCGTCACT+AGG + chr1.3:41879893-41879912 None:intergenic 50.0%
! AACAGATTGCCGGACTGGAT+TGG - chr1.3:41879763-41879782 MS.gene41046:CDS 50.0%
! GACTATCGCTCTACGGATTG+TGG - chr1.3:41879557-41879576 MS.gene41046:CDS 50.0%
!! GTGAAGAGTGTTGGAGAGGA+AGG + chr1.3:41879008-41879027 None:intergenic 50.0%
!! TCTATGGGTTATGGTGGACG+AGG - chr1.3:41879607-41879626 MS.gene41046:CDS 50.0%
GGAGGTCGCGGAAATTATGG+CGG - chr1.3:41878776-41878795 MS.gene41046:CDS 55.0%
GTTGGAACAGATTGCCGGAC+TGG - chr1.3:41879758-41879777 MS.gene41046:CDS 55.0%
TTCACTCCCTAGTGACGACG+AGG - chr1.3:41879883-41879902 MS.gene41046:CDS 55.0%
! GGAAATTATGGCGGAGGTGG+CGG - chr1.3:41878785-41878804 MS.gene41046:CDS 55.0%
! GGAGTAGCGGTGAAGAGTGT+TGG + chr1.3:41879017-41879036 None:intergenic 55.0%
!! AGCGGTGAAGAGTGTTGGAG+AGG + chr1.3:41879012-41879031 None:intergenic 55.0%
GGCGGAGGTCGCGGAAATTA+TGG - chr1.3:41878773-41878792 MS.gene41046:CDS 60.0%
GGTCGCGGAAATTATGGCGG+AGG - chr1.3:41878779-41878798 MS.gene41046:CDS 60.0%
! CGCGGAAATTATGGCGGAGG+TGG - chr1.3:41878782-41878801 MS.gene41046:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 41878771 41879913 41878771 ID=MS.gene41046
chr1.3 mRNA 41878771 41879913 41878771 ID=MS.gene41046.t1;Parent=MS.gene41046
chr1.3 exon 41878771 41879913 41878771 ID=MS.gene41046.t1.exon1;Parent=MS.gene41046.t1
chr1.3 CDS 41878771 41879913 41878771 ID=cds.MS.gene41046.t1;Parent=MS.gene41046.t1
Gene Sequence

>MS.gene41046

ATGGCGGAGGTCGCGGAAATTATGGCGGAGGTGGCGGAACCGTATCTACCTGATGAATTGATCACCCAAATCCTAATGAGGTTACCGGTTAAGTCGCTTATCCGTTTCAAATCCGTTTGTAAGTCATGGTTTTCTCTTATCTCTGATAATCACTTTGCAAATTCACATTTTCAACTTACTTCTTCAACTCACACTCGTAGGATTCTTTTCTTAACCGTAAATTCACAGTTTCAACCTTCCTCTCCAACACTCTTCACCGCTACTCCTGAATTTCGATCTATAGATTTACCGTCATTGTTTACCTACGATGATTATAATGAACCTGTTCCACTGAAACCTAGTTTTCCACTTCCGGAATCTCATTTTGATCTTCTAATTAAAGGTTCATGTAGAGGGTTTATATTTTTGCACACTTGGTCTGAAGCTTATATATGGAATCCATCCACTGGATTTCATAGACAAATACCTTTCCCTCCTAATGCTTCACATTTAAGTTTTTTTGGTTTTGGGTATGACGAGTCAACAGATGATTACTTGGTGGTTTCAGTTTCGTTTGATTACTTGGGGTTTTTCTCATTGAGGGCTAATGAATGGGAAGAAATCGTGGATACTGTCCATTTGCCTTTTTGTAGCAAGGACTCTTCTTTTGTTTATCCCTTAGTAGAGTCAGTCTTTAATGTGGCTATTCACTGGTTGGCTTTACGTCTTGATACACGTGACTATCTTGTTGTTGCATTTGATTTAGTGGAAAGGAAACTTGTAGAGATTCCTCTCCCAGATGATATTGACTATCGCTCTACGGATTGTGGTTTATGGGTATTTAGAGGATTTCTAAGTCTATGGGTTATGGTGGACGAGGATACAGTAGATATATGGGTAATGAAAGAATACAAAGTGCAGTCCTCTTGGACTAAAACTCTTGTTCTTACTACTTATGATACCATTCATAACGTTTCCCTTGTATGTTGCACAAAAAGTGGTGATATTGTTGGAACAGATTGCCGGACTGGATTGGTGAGATACGATGAGGAAGGAGAGTTCATAGAGCATTTCTACTATTGCAAAGATTCACGAAATGGATTCCGATTGGCTATGTATACAGAGTCTTTGCTTTCACTCCCTAGTGACGACGAGGAAGCTTAA

Protein sequence

>MS.gene41046.t1

MAEVAEIMAEVAEPYLPDELITQILMRLPVKSLIRFKSVCKSWFSLISDNHFANSHFQLTSSTHTRRILFLTVNSQFQPSSPTLFTATPEFRSIDLPSLFTYDDYNEPVPLKPSFPLPESHFDLLIKGSCRGFIFLHTWSEAYIWNPSTGFHRQIPFPPNASHLSFFGFGYDESTDDYLVVSVSFDYLGFFSLRANEWEEIVDTVHLPFCSKDSSFVYPLVESVFNVAIHWLALRLDTRDYLVVAFDLVERKLVEIPLPDDIDYRSTDCGLWVFRGFLSLWVMVDEDTVDIWVMKEYKVQSSWTKTLVLTTYDTIHNVSLVCCTKSGDIVGTDCRTGLVRYDEEGEFIEHFYYCKDSRNGFRLAMYTESLLSLPSDDEEA