AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053256


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053256.t1 MTR_4g006270 86.716 271 18 2 1 270 1 254 4.96e-167 469
MS.gene053256.t1 MTR_2g031640 55.224 268 108 6 4 261 6 271 2.68e-90 273
MS.gene053256.t1 MTR_2g026010 57.143 273 104 5 1 261 1 272 8.61e-89 270
MS.gene053256.t1 MTR_2g031720 54.255 282 112 8 1 269 1 278 6.10e-88 267
MS.gene053256.t1 MTR_2g024110 53.623 276 119 5 1 270 1 273 1.42e-87 266
MS.gene053256.t1 MTR_2g031680 53.309 272 115 5 4 269 6 271 3.66e-86 263
MS.gene053256.t1 MTR_2g031700 58.696 230 91 3 4 231 6 233 4.49e-86 259
MS.gene053256.t1 MTR_2g028110 53.710 283 110 8 1 269 1 276 6.93e-86 261
MS.gene053256.t1 MTR_8g099460 53.069 277 110 8 2 261 3 276 3.56e-80 248
MS.gene053256.t1 MTR_1g068875 54.104 268 115 6 1 262 1 266 3.59e-80 247
MS.gene053256.t1 MTR_0667s0010 48.201 278 124 6 4 262 6 282 1.67e-77 241
MS.gene053256.t1 MTR_1g068835 50.929 269 123 8 1 262 1 267 5.92e-77 239
MS.gene053256.t1 MTR_2g426090 50.890 281 110 9 7 262 9 286 7.72e-77 239
MS.gene053256.t1 MTR_2g028130 47.751 289 121 7 2 261 3 290 4.78e-76 237
MS.gene053256.t1 MTR_1g068860 52.399 271 118 7 1 262 1 269 3.01e-75 234
MS.gene053256.t1 MTR_2g426060 49.164 299 110 11 4 270 6 294 3.91e-74 232
MS.gene053256.t1 MTR_2g425980 45.918 294 128 7 2 269 3 291 3.49e-73 230
MS.gene053256.t1 MTR_3g083010 45.752 306 123 10 1 269 1 300 1.44e-69 221
MS.gene053256.t1 MTR_2g426070 46.454 282 119 7 5 257 7 285 7.54e-68 216
MS.gene053256.t1 MTR_2g028140 45.424 295 125 8 2 261 3 296 3.75e-67 214
MS.gene053256.t1 MTR_4g133170 42.264 265 142 4 1 258 1 261 4.16e-67 214
MS.gene053256.t1 MTR_2g028160 44.746 295 131 8 2 265 3 296 3.68e-66 212
MS.gene053256.t1 MTR_2g025420 45.238 294 125 7 4 262 6 298 6.05e-66 212
MS.gene053256.t1 MTR_2g426020 45.745 282 126 8 4 262 6 283 1.04e-65 211
MS.gene053256.t1 MTR_2g024100 48.120 266 115 7 19 262 22 286 5.65e-64 206
MS.gene053256.t1 MTR_2g021050 45.833 288 112 8 2 270 3 265 3.15e-63 204
MS.gene053256.t1 MTR_4g070550 44.291 289 131 8 2 261 3 290 7.59e-63 203
MS.gene053256.t1 MTR_1g068905 50.000 242 96 8 1 236 1 223 4.68e-61 196
MS.gene053256.t1 MTR_2g040050 47.685 216 84 5 59 268 10 202 7.91e-55 178
MS.gene053256.t1 MTR_2g022170 68.182 132 41 1 1 131 1 132 5.81e-54 172
MS.gene053256.t1 MTR_5g083940 47.847 209 69 5 1 209 1 169 3.87e-47 160
MS.gene053256.t1 MTR_2g025960 48.454 194 79 5 85 261 1 190 5.07e-47 159
MS.gene053256.t1 MTR_3g086970 48.000 200 73 6 1 200 1 169 2.48e-45 151
MS.gene053256.t1 MTR_7g110360 46.552 174 67 4 1 154 36 203 9.05e-38 135
MS.gene053256.t1 MTR_5g011200 25.912 274 180 7 4 262 17 282 4.39e-25 103
MS.gene053256.t1 MTR_3g010390 30.142 282 158 11 4 257 33 303 1.09e-24 102
MS.gene053256.t1 MTR_4g061340 29.804 255 145 9 4 234 26 270 1.51e-24 101
MS.gene053256.t1 MTR_5g057710 28.315 279 169 9 4 263 46 312 3.40e-24 100
MS.gene053256.t1 MTR_3g006670 27.778 288 162 10 4 263 49 318 9.76e-23 97.1
MS.gene053256.t1 MTR_3g007430 28.689 244 152 9 7 234 46 283 1.52e-22 96.3
MS.gene053256.t1 MTR_3g007330 27.985 268 167 11 4 257 48 303 4.18e-22 95.1
MS.gene053256.t1 MTR_3g024130 29.032 186 114 7 86 263 57 232 9.92e-22 93.2
MS.gene053256.t1 MTR_3g009310 26.667 300 188 8 4 280 42 332 9.97e-22 94.0
MS.gene053256.t1 MTR_2g046900 29.210 291 178 10 4 277 28 307 1.12e-21 94.0
MS.gene053256.t1 MTR_2g021150 28.058 278 168 10 4 261 14 279 1.20e-21 93.6
MS.gene053256.t1 MTR_3g007360 30.483 269 160 14 7 257 55 314 1.58e-21 93.6
MS.gene053256.t1 MTR_3g007270 27.018 285 177 8 4 263 47 325 2.59e-21 93.2
MS.gene053256.t1 MTR_3g007410 29.851 268 163 13 7 257 55 314 4.09e-21 92.4
MS.gene053256.t1 MTR_5g057790 26.978 278 174 11 4 263 46 312 4.64e-21 92.0
MS.gene053256.t1 MTR_6g053240 27.241 290 156 10 1 257 25 292 6.06e-21 92.0
MS.gene053256.t1 MTR_7g007300 27.737 274 156 9 4 260 103 351 6.80e-21 92.0
MS.gene053256.t1 MTR_3g034180 27.046 281 166 10 4 257 123 391 3.61e-20 90.1
MS.gene053256.t1 MTR_3g036290 27.459 244 150 7 4 235 22 250 3.90e-20 89.4
MS.gene053256.t1 MTR_1g097560 26.042 288 177 10 4 280 36 298 4.03e-20 89.4
MS.gene053256.t1 MTR_0044s0300 27.599 279 164 10 4 263 38 297 4.81e-20 89.4
MS.gene053256.t1 MTR_3g009300 29.851 268 143 11 7 263 37 270 6.98e-20 88.6
MS.gene053256.t1 MTR_6g053260 27.778 288 152 12 1 257 334 596 1.05e-19 89.4
MS.gene053256.t1 MTR_3g009240 26.351 296 186 9 4 278 36 320 1.84e-19 87.4
MS.gene053256.t1 MTR_3g058440 27.344 256 145 9 1 230 32 272 1.89e-19 86.7
MS.gene053256.t1 MTR_2g046920 28.622 283 159 10 4 265 24 284 1.96e-19 87.4
MS.gene053256.t1 MTR_5g057690 25.275 273 175 7 4 263 46 302 2.74e-19 87.0
MS.gene053256.t1 MTR_5g046300 27.437 277 173 11 1 264 1 262 2.75e-19 86.7
MS.gene053256.t1 MTR_5g046290 27.437 277 173 11 1 264 1 262 2.75e-19 86.7
MS.gene053256.t1 MTR_3g009260 25.939 293 186 8 7 280 44 324 6.82e-19 85.9
MS.gene053256.t1 MTR_3g058480 26.780 295 167 11 1 269 36 307 7.28e-19 85.1
MS.gene053256.t1 MTR_6g065980 25.182 274 166 8 4 263 16 264 9.75e-19 85.1
MS.gene053256.t1 MTR_4g031770 27.143 280 162 10 1 257 1 261 1.15e-18 85.1
MS.gene053256.t1 MTR_7g070440 23.792 269 184 7 6 256 9 274 1.18e-18 85.1
MS.gene053256.t1 MTR_4g030830 28.333 300 158 14 4 262 9 292 1.51e-18 85.1
MS.gene053256.t1 MTR_1g055070 26.236 263 160 10 1 234 46 303 1.55e-18 85.1
MS.gene053256.t1 MTR_2g029990 25.368 272 173 10 5 258 52 311 2.19e-18 84.7
MS.gene053256.t1 MTR_8g101580 27.698 278 177 10 1 266 42 307 2.28e-18 84.3
MS.gene053256.t1 MTR_3g010920 26.007 273 159 9 4 262 44 287 2.42e-18 84.3
MS.gene053256.t1 MTR_1g050542 30.453 243 143 9 4 235 58 285 2.42e-18 84.3
MS.gene053256.t1 MTR_1g097330 30.453 243 146 12 4 235 16 246 2.45e-18 84.7
MS.gene053256.t1 MTR_4g107820 25.524 286 169 10 2 267 34 295 2.67e-18 84.3
MS.gene053256.t1 MTR_4g107780 25.524 286 169 10 2 267 34 295 2.67e-18 84.3
MS.gene053256.t1 MTR_2g046830 28.571 287 171 10 7 277 28 296 3.24e-18 84.0
MS.gene053256.t1 MTR_4g107780 25.524 286 169 10 2 267 34 295 3.32e-18 84.3
MS.gene053256.t1 MTR_4g107820 25.524 286 169 10 2 267 34 295 3.38e-18 84.0
MS.gene053256.t1 MTR_1g097490 28.571 266 165 9 4 257 49 301 3.66e-18 84.0
MS.gene053256.t1 MTR_3g034160 26.335 281 168 11 4 257 9 277 4.20e-18 83.6
MS.gene053256.t1 MTR_3g014540 25.632 277 168 11 4 257 29 290 4.45e-18 83.6
MS.gene053256.t1 MTR_3g058470 31.401 207 107 8 1 180 34 232 5.07e-18 83.2
MS.gene053256.t1 MTR_5g057040 33.133 166 89 5 4 152 46 206 6.48e-18 84.0
MS.gene053256.t1 MTR_3g013740 28.723 282 166 12 4 257 44 318 8.83e-18 82.8
MS.gene053256.t1 MTR_2g078850 26.882 279 162 12 7 263 33 291 9.90e-18 82.4
MS.gene053256.t1 MTR_3g011100 27.562 283 172 12 4 263 235 507 1.08e-17 83.2
MS.gene053256.t1 MTR_2g021190 27.437 277 171 15 4 262 21 285 1.38e-17 82.0
MS.gene053256.t1 MTR_3g030330 26.545 275 167 9 4 263 20 274 1.76e-17 81.6
MS.gene053256.t1 MTR_7g407070 24.399 291 184 10 1 262 29 312 1.97e-17 82.0
MS.gene053256.t1 MTR_4g055060 26.165 279 172 12 4 258 30 298 2.01e-17 81.6
MS.gene053256.t1 MTR_1g054725 28.287 251 153 10 4 234 20 263 2.13e-17 81.6
MS.gene053256.t1 MTR_1g055135 31.250 256 136 13 4 235 13 252 3.66e-17 80.9
MS.gene053256.t1 MTR_3g030240 27.500 280 156 12 1 263 37 286 4.03e-17 80.9
MS.gene053256.t1 MTR_2g055970 25.556 270 171 11 4 257 211 466 4.08e-17 81.3
MS.gene053256.t1 MTR_5g057643 30.909 165 94 7 4 152 46 206 6.05e-17 79.0
MS.gene053256.t1 MTR_2g047832 27.119 295 168 11 4 265 29 309 6.41e-17 80.5
MS.gene053256.t1 MTR_3g436150 26.690 281 178 8 4 262 32 306 9.45e-17 79.7
MS.gene053256.t1 MTR_5g057020 25.275 273 170 10 4 263 46 297 1.09e-16 79.3
MS.gene053256.t1 MTR_5g007610 26.909 275 165 11 4 251 41 306 1.25e-16 79.7
MS.gene053256.t1 MTR_6g048120 27.347 245 132 12 4 213 36 269 1.25e-16 79.7
MS.gene053256.t1 MTR_7g013590 27.636 275 162 12 7 259 39 298 1.92e-16 79.0
MS.gene053256.t1 MTR_2g461450 25.279 269 170 10 1 256 15 265 2.13e-16 78.6
MS.gene053256.t1 MTR_2g437190 44.030 134 59 7 17 143 32 156 3.07e-16 75.1
MS.gene053256.t1 MTR_3g013770 25.962 312 183 13 1 278 30 327 3.13e-16 78.2
MS.gene053256.t1 MTR_0128s0070 25.510 294 161 10 2 257 20 293 3.19e-16 78.2
MS.gene053256.t1 MTR_0128s0020 25.597 293 159 11 4 257 18 290 3.53e-16 78.2
MS.gene053256.t1 MTR_3g034130 26.953 256 154 11 4 234 9 256 3.61e-16 77.8
MS.gene053256.t1 MTR_3g014570 25.993 277 167 10 4 257 29 290 3.64e-16 78.2
MS.gene053256.t1 MTR_4g109270 27.737 274 156 13 2 253 6 259 4.02e-16 77.8
MS.gene053256.t1 MTR_3g011060 26.132 287 176 9 4 263 28 305 4.61e-16 77.8
MS.gene053256.t1 MTR_3g024040 25.000 260 169 9 10 260 37 279 5.49e-16 77.4
MS.gene053256.t1 MTR_4g030090 26.333 300 170 14 2 265 12 296 5.66e-16 77.8
MS.gene053256.t1 MTR_8g467140 25.000 248 158 9 4 235 32 267 8.74e-16 76.6
MS.gene053256.t1 MTR_3g036430 26.582 237 149 9 1 236 17 229 8.82e-16 76.6
MS.gene053256.t1 MTR_0760s0010 25.087 287 175 10 9 277 52 316 1.11e-15 76.6
MS.gene053256.t1 MTR_3g036335 27.368 285 161 14 4 263 41 304 1.14e-15 76.6
MS.gene053256.t1 MTR_8g039500 25.347 288 181 12 4 267 12 289 1.36e-15 76.3
MS.gene053256.t1 MTR_3g010870 23.723 274 178 9 4 263 37 293 1.40e-15 76.3
MS.gene053256.t1 MTR_3g024110 25.600 250 152 11 1 234 98 329 1.83e-15 76.3
MS.gene053256.t1 MTR_1g088120 25.763 295 172 9 7 261 13 300 1.91e-15 76.3
MS.gene053256.t1 MTR_5g096630 26.007 273 157 10 3 234 17 285 1.99e-15 76.3
MS.gene053256.t1 MTR_4g102410 25.081 307 184 13 4 268 61 363 2.06e-15 76.3
MS.gene053256.t1 MTR_8g013010 29.435 248 133 12 4 226 54 284 2.24e-15 75.1
MS.gene053256.t1 MTR_3g006570 25.912 274 178 10 4 263 21 283 2.37e-15 75.9
MS.gene053256.t1 MTR_3g010590 25.806 279 163 12 1 262 36 287 3.16e-15 75.5
MS.gene053256.t1 MTR_2g021155 27.941 272 167 11 4 257 33 293 3.40e-15 75.9
MS.gene053256.t1 MTR_4g019990 25.000 292 173 10 2 256 4 286 3.67e-15 75.1
MS.gene053256.t1 MTR_4g023090 25.818 275 181 9 4 265 16 280 3.86e-15 75.1
MS.gene053256.t1 MTR_0129s0070 24.138 261 161 8 7 234 20 276 4.85e-15 74.7
MS.gene053256.t1 MTR_3g030310 24.126 286 171 10 4 262 21 287 7.56e-15 74.3
MS.gene053256.t1 MTR_7g079160 27.964 329 153 19 4 261 8 323 1.25e-14 73.9
MS.gene053256.t1 MTR_1g054575 27.984 243 152 9 4 235 52 282 1.86e-14 73.6
MS.gene053256.t1 MTR_7g056820 28.374 289 163 14 4 261 7 282 2.11e-14 72.8
MS.gene053256.t1 MTR_0054s0090 26.165 279 149 11 4 234 17 286 3.20e-14 72.4
MS.gene053256.t1 MTR_5g069760 24.912 285 162 12 4 256 6 270 3.50e-14 72.0
MS.gene053256.t1 MTR_3g023930 25.207 242 149 7 4 235 34 253 5.71e-14 71.6
MS.gene053256.t1 MTR_0242s0060 25.000 292 174 10 4 256 9 294 6.57e-14 71.6
MS.gene053256.t1 MTR_0242s0040 25.000 292 174 10 4 256 9 294 6.57e-14 71.6
MS.gene053256.t1 MTR_3g010620 25.357 280 149 10 7 262 39 282 6.79e-14 71.6
MS.gene053256.t1 MTR_8g073550 30.612 196 106 9 4 180 30 214 7.45e-14 69.7
MS.gene053256.t1 MTR_1g056710 23.574 263 157 9 1 237 31 275 8.16e-14 71.2
MS.gene053256.t1 MTR_0115s0020 26.667 285 159 13 1 246 7 280 8.44e-14 71.2
MS.gene053256.t1 MTR_3g030350 24.535 269 171 11 4 257 35 286 8.78e-14 71.2
MS.gene053256.t1 MTR_3g010450 25.221 226 150 8 8 226 1 214 1.02e-13 69.7
MS.gene053256.t1 MTR_2g065860 25.253 297 170 12 4 261 12 295 1.03e-13 70.9
MS.gene053256.t1 MTR_3g006530 22.901 262 156 8 4 236 40 284 1.04e-13 70.9
MS.gene053256.t1 MTR_1g055055 23.723 274 161 8 4 260 26 268 1.14e-13 70.5
MS.gene053256.t1 MTR_3g083640 26.644 289 158 13 1 263 52 312 1.36e-13 70.5
MS.gene053256.t1 MTR_6g079810 24.671 304 176 11 4 258 70 369 1.62e-13 70.5
MS.gene053256.t1 MTR_4g117550 23.529 272 156 11 4 234 17 277 1.76e-13 70.1
MS.gene053256.t1 MTR_4g024890 25.347 288 168 11 1 256 7 279 2.01e-13 70.1
MS.gene053256.t1 MTR_4g037465 28.014 282 165 11 4 257 21 292 2.02e-13 70.1
MS.gene053256.t1 MTR_1g442850 27.241 290 151 13 6 256 7 275 2.20e-13 69.7
MS.gene053256.t1 MTR_6g060650 27.046 281 160 10 4 255 8 272 3.36e-13 69.3
MS.gene053256.t1 MTR_3g464470 27.148 291 156 14 2 256 5 275 3.43e-13 69.3
MS.gene053256.t1 MTR_7g056710 27.336 289 149 12 4 256 18 281 3.93e-13 69.3
MS.gene053256.t1 MTR_4g023130 24.638 276 151 10 4 275 9 231 5.11e-13 68.6
MS.gene053256.t1 MTR_7g016930 24.296 284 172 9 4 261 16 282 5.21e-13 68.6
MS.gene053256.t1 MTR_0054s0100 26.335 281 148 12 4 234 17 288 6.07e-13 68.6
MS.gene053256.t1 MTR_3g024150 25.540 278 165 11 7 263 38 294 6.24e-13 68.6
MS.gene053256.t1 MTR_4g014370 25.784 287 153 14 4 233 11 294 6.44e-13 68.6
MS.gene053256.t1 MTR_7g078840 27.532 316 164 16 4 261 10 318 6.59e-13 68.6
MS.gene053256.t1 MTR_3g010520 25.410 244 146 9 4 235 25 244 6.63e-13 68.6
MS.gene053256.t1 MTR_2g021252 26.838 272 151 10 7 258 50 293 7.27e-13 68.6
MS.gene053256.t1 MTR_0831s0010 28.041 296 160 16 4 261 50 330 9.43e-13 68.2
MS.gene053256.t1 MTR_4g030110 25.547 274 148 12 4 235 30 289 9.47e-13 68.2
MS.gene053256.t1 MTR_3g464500 26.821 302 146 15 2 256 25 298 1.07e-12 67.8
MS.gene053256.t1 MTR_1g094210 25.275 273 162 11 4 257 57 306 1.09e-12 67.8
MS.gene053256.t1 MTR_3g007300 27.407 270 158 12 1 263 46 284 1.33e-12 67.4
MS.gene053256.t1 MTR_1g094210 24.232 293 180 11 4 277 57 326 1.36e-12 67.8
MS.gene053256.t1 MTR_3g096250 28.652 178 110 4 4 167 47 221 1.36e-12 67.4
MS.gene053256.t1 MTR_7g078860 24.834 302 158 12 4 256 9 290 1.40e-12 67.4
MS.gene053256.t1 MTR_4g021785 25.676 296 178 13 4 281 9 280 1.51e-12 67.4
MS.gene053256.t1 MTR_2g048580 25.403 248 144 6 4 235 8 230 1.54e-12 67.4
MS.gene053256.t1 MTR_7g056003 24.662 296 156 14 7 256 18 292 1.67e-12 67.4
MS.gene053256.t1 MTR_7g077970 26.101 318 151 14 1 256 1 296 1.68e-12 67.4
MS.gene053256.t1 MTR_3g103020 26.812 276 162 10 4 257 20 277 1.92e-12 67.0
MS.gene053256.t1 MTR_7g077990 24.590 305 153 10 4 261 17 291 2.02e-12 67.0
MS.gene053256.t1 MTR_6g007150 25.926 216 133 9 60 258 33 238 2.17e-12 66.6
MS.gene053256.t1 MTR_3g010430 24.615 260 158 7 4 234 36 286 2.52e-12 67.0
MS.gene053256.t1 MTR_4g117720 30.263 152 93 6 89 235 110 253 2.66e-12 66.6
MS.gene053256.t1 MTR_2g022000 25.352 284 157 10 4 234 16 297 3.76e-12 66.2
MS.gene053256.t1 MTR_3g010970 23.105 277 162 10 7 262 51 297 3.99e-12 66.2
MS.gene053256.t1 MTR_6g086825 25.157 318 171 13 4 268 70 373 4.02e-12 66.2
MS.gene053256.t1 MTR_7g055977 25.000 292 157 12 4 256 7 275 7.03e-12 65.5
MS.gene053256.t1 MTR_5g070088 24.194 310 189 10 4 279 7 304 7.24e-12 65.5
MS.gene053256.t1 MTR_3g013950 26.132 287 166 12 7 256 9 286 8.84e-12 65.1
MS.gene053256.t1 MTR_6g027910 24.055 291 177 14 7 263 12 292 1.12e-11 64.7
MS.gene053256.t1 MTR_7g061050 24.296 284 169 10 4 256 13 281 1.40e-11 64.7
MS.gene053256.t1 MTR_0267s0050 26.042 288 175 11 1 256 3 284 1.59e-11 64.3
MS.gene053256.t1 MTR_3g011120 26.552 290 175 11 4 265 14 293 1.62e-11 64.3
MS.gene053256.t1 MTR_8g464770 25.087 287 171 12 4 258 12 286 1.72e-11 64.3
MS.gene053256.t1 MTR_5g097330 24.585 301 175 9 6 261 18 311 1.80e-11 64.3
MS.gene053256.t1 MTR_5g068490 30.000 190 114 10 83 272 25 195 1.90e-11 63.5
MS.gene053256.t1 MTR_5g043605 26.271 236 130 9 4 234 25 221 2.13e-11 63.9
MS.gene053256.t1 MTR_2g066150 25.087 287 174 11 4 273 12 274 2.33e-11 63.9
MS.gene053256.t1 MTR_8g066440 25.271 277 151 12 5 232 24 293 2.55e-11 63.9
MS.gene053256.t1 MTR_7g056737 25.606 289 155 10 4 256 22 286 3.17e-11 63.5
MS.gene053256.t1 MTR_5g046280 25.000 180 117 7 88 264 1 165 5.25e-11 62.0
MS.gene053256.t1 MTR_7g061090 24.080 299 166 10 4 256 22 305 5.43e-11 62.8
MS.gene053256.t1 MTR_4g028510 24.912 285 148 13 4 237 16 285 5.83e-11 62.8
MS.gene053256.t1 MTR_4g023440 26.728 217 135 7 4 206 18 224 7.25e-11 62.4
MS.gene053256.t1 MTR_7g066840 23.127 307 176 10 4 272 23 307 7.54e-11 62.4
MS.gene053256.t1 MTR_8g101940 26.667 225 132 9 4 207 2 214 7.77e-11 62.4
MS.gene053256.t1 MTR_7g037670 25.620 242 160 7 2 234 21 251 7.88e-11 62.0
MS.gene053256.t1 MTR_7g060960 25.403 248 138 9 4 235 32 248 7.99e-11 62.4
MS.gene053256.t1 MTR_4g030760 26.293 232 117 10 4 203 73 282 9.18e-11 62.4
MS.gene053256.t1 MTR_6g090180 25.387 323 172 15 4 272 47 354 9.86e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053256.t1 AT4G12560 32.746 284 164 9 1 262 1 279 1.18e-33 127
MS.gene053256.t1 AT4G12560 32.746 284 164 9 1 262 1 279 1.18e-33 127
MS.gene053256.t1 AT4G12560 32.746 284 164 9 1 262 1 279 1.18e-33 127
MS.gene053256.t1 AT4G22390 27.719 285 172 12 1 262 1 274 5.91e-21 92.0
MS.gene053256.t1 AT4G22390 27.719 285 172 12 1 262 1 274 7.04e-21 91.7
MS.gene053256.t1 AT3G06240 25.817 306 165 10 4 258 36 330 3.82e-19 87.0
MS.gene053256.t1 AT3G16210 24.265 272 177 10 4 269 5 253 3.10e-16 78.2
MS.gene053256.t1 AT3G16590 28.070 285 164 13 4 266 5 270 6.87e-14 71.2
MS.gene053256.t1 AT3G22730 25.694 288 181 11 1 273 3 272 1.04e-13 70.9
MS.gene053256.t1 AT1G47390 28.807 243 147 11 4 235 7 234 5.07e-13 68.9
MS.gene053256.t1 AT3G10430 26.250 240 154 8 2 231 3 229 1.08e-12 67.8
MS.gene053256.t1 AT1G32600 26.339 224 131 11 45 261 1 197 1.66e-12 66.6
MS.gene053256.t1 AT3G17710 25.746 268 160 11 2 252 4 249 8.56e-12 65.1
MS.gene053256.t1 AT3G21130 25.180 278 169 11 4 257 10 272 1.51e-11 64.3
MS.gene053256.t1 AT1G65990 23.794 311 193 12 1 276 159 460 1.92e-11 64.7
MS.gene053256.t1 AT2G27520 24.621 264 164 9 3 260 5 239 5.94e-11 62.8

Find 0 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATCAAATTGGTAAAATT+CGG + 32807:608781-608800 None:intergenic 20.0%
!! TCTGAATAATAAAACTACTA+AGG - 32807:609388-609407 MS.gene053256:CDS 20.0%
! AATATGGATTTAGAGATAGT+TGG - 32807:609432-609451 MS.gene053256:CDS 25.0%
! TTGGTGTATATTGTTTACTT+TGG - 32807:609451-609470 MS.gene053256:CDS 25.0%
!! ATTTTGAACTTAATCGGAAT+CGG + 32807:608671-608690 None:intergenic 25.0%
!!! TAAGCCATTTTGAACTTAAT+CGG + 32807:608677-608696 None:intergenic 25.0%
AGTTTGTAATCATCAGAGAA+TGG + 32807:609029-609048 None:intergenic 30.0%
GATTCCGATTAAGTTCAAAA+TGG - 32807:608670-608689 MS.gene053256:intron 30.0%
GTGTATATTGTTTACTTTGG+AGG - 32807:609454-609473 MS.gene053256:CDS 30.0%
GTTTGGCTAATGAAAGAATA+TGG - 32807:609416-609435 MS.gene053256:CDS 30.0%
TTAGGTTAGGGAAATCAAAT+TGG + 32807:608791-608810 None:intergenic 30.0%
!! AAACTACTAAGGTTGATGTT+TGG - 32807:609399-609418 MS.gene053256:CDS 30.0%
AAAATTGTCAAGTGCGTGAA+TGG + 32807:609219-609238 None:intergenic 35.0%
AACTGATGTTTACGGATGTT+AGG + 32807:608930-608949 None:intergenic 35.0%
AAGGGATGAACTGATGTTTA+CGG + 32807:608938-608957 None:intergenic 35.0%
AAGGTTAAACGCGACAATTA+AGG + 32807:609252-609271 None:intergenic 35.0%
AAGTAGACGAAATTGCTTTC+TGG - 32807:608901-608920 MS.gene053256:CDS 35.0%
AATACTAGCAACTACTAGCA+AGG - 32807:609307-609326 MS.gene053256:CDS 35.0%
ACGCTCACATATTATATCGA+TGG + 32807:609069-609088 None:intergenic 35.0%
ACTGATGTTTACGGATGTTA+GGG + 32807:608929-608948 None:intergenic 35.0%
AGAAAGCAATTTCGTCTACT+TGG + 32807:608902-608921 None:intergenic 35.0%
CTAGTAGTTGCTAGTATTTC+AGG + 32807:609305-609324 None:intergenic 35.0%
TCAGTTCGAAAATGAACTCA+TGG - 32807:609111-609130 MS.gene053256:CDS 35.0%
! GGCACTAATCTTTCTGTTTT+GGG - 32807:609335-609354 MS.gene053256:CDS 35.0%
! TGAAATTGAGGGAGTTTTTG+AGG + 32807:608737-608756 None:intergenic 35.0%
! TGGCACTAATCTTTCTGTTT+TGG - 32807:609334-609353 MS.gene053256:CDS 35.0%
!! ATGGAAAGTACTTCCCAATA+TGG - 32807:609130-609149 MS.gene053256:CDS 35.0%
AGCAATTTCGTCTACTTGGT+TGG + 32807:608898-608917 None:intergenic 40.0%
ATTTCGGTCAACAAATCCGA+TGG + 32807:608618-608637 None:intergenic 40.0%
CGTTGAAAATCTCTTGTGCA+AGG + 32807:609271-609290 None:intergenic 40.0%
CGTTGAGAATTCTCTTCACT+GGG - 32807:609190-609209 MS.gene053256:CDS 40.0%
GAAGTTGTGGGAATCGATTA+TGG + 32807:608703-608722 None:intergenic 40.0%
GAATAACCTAAAGGCTTCCA+CGG + 32807:609506-609525 None:intergenic 40.0%
GAGGATGAGGTTGAAATTGA+GGG + 32807:608748-608767 None:intergenic 40.0%
GCTCTTCTTGGTTCATGTAA+CGG - 32807:608858-608877 MS.gene053256:CDS 40.0%
GTGAAGGTTAGTGAAGTTGT+GGG + 32807:608715-608734 None:intergenic 40.0%
GTTAAACGCGACAATTAAGG+CGG + 32807:609249-609268 None:intergenic 40.0%
GTTGCTAGTATTTCAGGAAG+AGG + 32807:609299-609318 None:intergenic 40.0%
TCGTTGAGAATTCTCTTCAC+TGG - 32807:609189-609208 MS.gene053256:CDS 40.0%
TGAGGATGAGGTTGAAATTG+AGG + 32807:608749-608768 None:intergenic 40.0%
TTAAACGCGACAATTAAGGC+GGG + 32807:609248-609267 None:intergenic 40.0%
TTGAACTTAATCGGAATCGG+AGG + 32807:608668-608687 None:intergenic 40.0%
! ACCTTCCATTTTGTCGTACA+CGG - 32807:608990-609009 MS.gene053256:CDS 40.0%
! GCAACTACTAGCAAGGATTT+TGG - 32807:609314-609333 MS.gene053256:CDS 40.0%
! TGCACAAGAGATTTTCAACG+AGG - 32807:609271-609290 MS.gene053256:CDS 40.0%
! TGGAAGCCTTTAGGTTATTC+TGG - 32807:609506-609525 MS.gene053256:CDS 40.0%
AAAGGCTTCCACGGTGTAAA+AGG + 32807:609497-609516 None:intergenic 45.0%
AACAGCCATGTCTTGAGATG+AGG + 32807:609168-609187 None:intergenic 45.0%
AACCAGTGGTGGTTAGGTTA+GGG + 32807:608803-608822 None:intergenic 45.0%
ACATCAGACGTCGAAGTCAA+AGG + 32807:608837-608856 None:intergenic 45.0%
ATTGGTAAAATTCGGAGCCG+TGG + 32807:608773-608792 None:intergenic 45.0%
CAAAGCCGTGTACGACAAAA+TGG + 32807:608998-609017 None:intergenic 45.0%
CGATGGAAGAAGAGATTCTG+AGG + 32807:609052-609071 None:intergenic 45.0%
CTTAATCGGAATCGGAGGAT+AGG + 32807:608663-608682 None:intergenic 45.0%
GGTGAAGGTTAGTGAAGTTG+TGG + 32807:608716-608735 None:intergenic 45.0%
TATCGCCTCATCTCAAGACA+TGG - 32807:609160-609179 MS.gene053256:CDS 45.0%
TGAGAATTCTCTTCACTGGG+TGG - 32807:609193-609212 MS.gene053256:CDS 45.0%
TTTACACCGTGGAAGCCTTT+AGG - 32807:609497-609516 MS.gene053256:CDS 45.0%
! TCAGTAGACCTTTTACACCG+TGG - 32807:609486-609505 MS.gene053256:CDS 45.0%
!!! TGAGGGAGTTTTTGAGGTGA+AGG + 32807:608731-608750 None:intergenic 45.0%
AATCGGAGGATAGGTTGTGG+AGG + 32807:608654-608673 None:intergenic 50.0%
ACGTCTGATGTCGCTCTTCT+TGG - 32807:608846-608865 MS.gene053256:CDS 50.0%
AGGCAAGCGAGAGAGGATTT+CGG + 32807:608634-608653 None:intergenic 50.0%
CAGACGTCGAAGTCAAAGGA+TGG + 32807:608833-608852 None:intergenic 50.0%
CTATAGAACGGCGAGGAGAA+GGG + 32807:608965-608984 None:intergenic 50.0%
CTTGGTTGGAGATGCAGAGA+AGG + 32807:608884-608903 None:intergenic 50.0%
GAACCAGTGGTGGTTAGGTT+AGG + 32807:608804-608823 None:intergenic 50.0%
GCCGTGTACGACAAAATGGA+AGG + 32807:608994-609013 None:intergenic 50.0%
GGAAGGTAGCGCCTATAGAA+CGG + 32807:608977-608996 None:intergenic 50.0%
TATAGAACGGCGAGGAGAAG+GGG + 32807:608964-608983 None:intergenic 50.0%
TTCAACCTCATCCTCAGCCA+CGG - 32807:608753-608772 MS.gene053256:CDS 50.0%
TTCCCTAACCTAACCACCAC+TGG - 32807:608798-608817 MS.gene053256:CDS 50.0%
AAAATTCGGAGCCGTGGCTG+AGG + 32807:608767-608786 None:intergenic 55.0%
AGAGCGAACCAGTGGTGGTT+AGG + 32807:608809-608828 None:intergenic 55.0%
AGGATGGTAGAGCGAACCAG+TGG + 32807:608817-608836 None:intergenic 55.0%
ATAGAACGGCGAGGAGAAGG+GGG + 32807:608963-608982 None:intergenic 55.0%
ATGGTAGAGCGAACCAGTGG+TGG + 32807:608814-608833 None:intergenic 55.0%
CCTATAGAACGGCGAGGAGA+AGG + 32807:608966-608985 None:intergenic 55.0%
CCTTCTCCTCGCCGTTCTAT+AGG - 32807:608963-608982 MS.gene053256:CDS 55.0%
CGGAATCGGAGGATAGGTTG+TGG + 32807:608657-608676 None:intergenic 55.0%
GCGATAGCGTGCGCCATATT+GGG + 32807:609146-609165 None:intergenic 55.0%
GGCGAGGAGAAGGGGGATAA+GGG + 32807:608956-608975 None:intergenic 60.0%
GGCGATAGCGTGCGCCATAT+TGG + 32807:609147-609166 None:intergenic 60.0%
GTAGCGCCTATAGAACGGCG+AGG + 32807:608972-608991 None:intergenic 60.0%
GTTGTGGAGGCAAGCGAGAG+AGG + 32807:608641-608660 None:intergenic 60.0%
CGGCGAGGAGAAGGGGGATA+AGG + 32807:608957-608976 None:intergenic 65.0%
CGGAGCCGTGGCTGAGGATG+AGG + 32807:608761-608780 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
32807 gene 608603 609531 608603 ID=MS.gene053256
32807 mRNA 608603 609531 608603 ID=MS.gene053256.t1;Parent=MS.gene053256
32807 exon 608725 609531 608725 ID=MS.gene053256.t1.exon1;Parent=MS.gene053256.t1
32807 CDS 608725 609531 608725 ID=cds.MS.gene053256.t1;Parent=MS.gene053256.t1
32807 exon 608603 608641 608603 ID=MS.gene053256.t1.exon2;Parent=MS.gene053256.t1
32807 CDS 608603 608641 608603 ID=cds.MS.gene053256.t1;Parent=MS.gene053256.t1
Gene Sequence

>MS.gene053256

ATGGCGGATCTTCCATCGGATTTGTTGACCGAAATCCTCTCTCGCTTGCCTCCACAACCTATCCTCCGATTCCGATTAAGTTCAAAATGGCTTAAATCCATAATCGATTCCCACAACTTCACTAACCTTCACCTCAAAAACTCCCTCAATTTCAACCTCATCCTCAGCCACGGCTCCGAATTTTACCAATTTGATTTCCCTAACCTAACCACCACTGGTTCGCTCTACCATCCTTTGACTTCGACGTCTGATGTCGCTCTTCTTGGTTCATGTAACGGCCTTCTCTGCATCTCCAACCAAGTAGACGAAATTGCTTTCTGGAACCCTAACATCCGTAAACATCAGTTCATCCCTTATCCCCCTTCTCCTCGCCGTTCTATAGGCGCTACCTTCCATTTTGTCGTACACGGCTTTGCTTACGATCCATTCTCTGATGATTACAAACTCCTCAGAATCTCTTCTTCCATCGATATAATATGTGAGCGTTTTGATTCACAAGTGACACTCTTCAGTTCGAAAATGAACTCATGGAAAGTACTTCCCAATATGGCGCACGCTATCGCCTCATCTCAAGACATGGCTGTTTTCGTTGAGAATTCTCTTCACTGGGTGGCCATTCACGCACTTGACAATTTTGATCAACCCGCCTTAATTGTCGCGTTTAACCTTGCACAAGAGATTTTCAACGAGGTTCCTCTTCCTGAAATACTAGCAACTACTAGCAAGGATTTTGGCACTAATCTTTCTGTTTTGGGAGAGTCTCTTTGTATGCTTCTGAGATATGATCTGAATAATAAAACTACTAAGGTTGATGTTTGGCTAATGAAAGAATATGGATTTAGAGATAGTTGGTGTATATTGTTTACTTTGGAGGAAGTGTTTTTCAGTAGACCTTTTACACCGTGGAAGCCTTTAGGTTATTCTGGTGA

Protein sequence

>MS.gene053256.t1

MADLPSDLLTEILSRLPPQPILRFRLSSKWLKSIIDSHNFTNLHLKNSLNFNLILSHGSEFYQFDFPNLTTTGSLYHPLTSTSDVALLGSCNGLLCISNQVDEIAFWNPNIRKHQFIPYPPSPRRSIGATFHFVVHGFAYDPFSDDYKLLRISSSIDIICERFDSQVTLFSSKMNSWKVLPNMAHAIASSQDMAVFVENSLHWVAIHALDNFDQPALIVAFNLAQEIFNEVPLPEILATTSKDFGTNLSVLGESLCMLLRYDLNNKTTKTFYTVEAFRLFW