AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43796


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43796.t1 MTR_5g070130 87.887 388 47 0 1 388 1 388 0.0 701
MS.gene43796.t1 MTR_5g070080 65.897 390 105 5 6 376 5 385 1.31e-171 484
MS.gene43796.t1 MTR_5g070088 61.893 391 122 4 6 376 2 385 6.67e-161 457
MS.gene43796.t1 MTR_3g103020 55.615 374 155 4 2 373 11 375 1.54e-127 372
MS.gene43796.t1 MTR_5g097210 55.348 374 146 10 3 371 1 358 4.77e-122 358
MS.gene43796.t1 MTR_4g023080 52.957 372 153 8 3 373 1 351 1.87e-118 348
MS.gene43796.t1 MTR_4g023090 50.382 393 163 9 2 376 7 385 4.69e-116 343
MS.gene43796.t1 MTR_3g034180 52.604 384 155 9 2 371 114 484 4.75e-115 344
MS.gene43796.t1 MTR_3g034160 52.835 388 155 11 3 376 1 374 1.73e-110 328
MS.gene43796.t1 MTR_4g021785 50.806 372 162 8 3 373 1 352 1.51e-108 323
MS.gene43796.t1 MTR_1g055135 51.622 370 160 9 10 371 12 370 3.08e-108 323
MS.gene43796.t1 MTR_8g433040 51.194 377 152 10 1 371 9 359 2.48e-107 320
MS.gene43796.t1 MTR_8g032380 51.194 377 152 10 1 371 9 359 2.48e-107 320
MS.gene43796.t1 MTR_3g034130 50.535 374 159 9 3 362 1 362 2.62e-107 320
MS.gene43796.t1 MTR_4g109270 50.266 376 166 9 4 373 1 361 3.48e-107 320
MS.gene43796.t1 MTR_4g109280 54.054 370 148 11 4 369 1 352 1.10e-105 315
MS.gene43796.t1 MTR_4g023380 49.127 401 149 9 2 376 7 378 4.24e-104 312
MS.gene43796.t1 MTR_4g122850 50.975 359 154 12 23 371 13 359 1.57e-103 311
MS.gene43796.t1 MTR_4g023130 48.518 371 130 7 3 373 1 310 9.14e-103 306
MS.gene43796.t1 MTR_4g117750 52.291 371 150 9 9 370 1 353 1.13e-102 312
MS.gene43796.t1 MTR_4g117750 54.717 106 48 0 266 371 373 478 2.57e-26 110
MS.gene43796.t1 MTR_4g116330 51.064 376 162 11 5 373 17 377 3.87e-100 302
MS.gene43796.t1 MTR_8g032390 50.529 378 144 12 1 372 31 371 4.17e-100 302
MS.gene43796.t1 MTR_4g094365 48.549 379 173 10 4 376 1 363 5.27e-100 301
MS.gene43796.t1 MTR_4g117720 48.429 382 140 10 4 376 44 377 4.17e-99 300
MS.gene43796.t1 MTR_4g117770 49.086 383 163 8 4 373 1 364 1.16e-97 295
MS.gene43796.t1 MTR_4g117810 49.086 383 163 8 4 373 1 364 1.16e-97 295
MS.gene43796.t1 MTR_6g060650 49.606 381 164 10 4 370 1 367 2.66e-97 295
MS.gene43796.t1 MTR_4g023070 47.368 380 168 8 11 373 3 367 6.54e-97 294
MS.gene43796.t1 MTR_4g117850 49.728 368 161 10 10 369 22 373 1.68e-95 290
MS.gene43796.t1 MTR_4g023120 47.895 380 166 9 11 373 3 367 3.35e-95 289
MS.gene43796.t1 MTR_4g117780 48.501 367 172 7 11 373 11 364 8.92e-95 288
MS.gene43796.t1 MTR_4g023440 48.670 376 136 12 2 373 7 329 1.81e-92 281
MS.gene43796.t1 MTR_4g023150 48.128 374 169 10 5 373 4 357 3.84e-92 281
MS.gene43796.t1 MTR_4g023190 47.594 374 170 10 5 373 4 356 1.61e-90 277
MS.gene43796.t1 MTR_4g118380 48.370 368 157 8 4 349 1 357 2.81e-88 271
MS.gene43796.t1 MTR_8g433030 46.933 375 129 12 1 372 31 338 3.36e-86 265
MS.gene43796.t1 MTR_4g023200 47.594 374 171 10 5 373 4 357 3.41e-86 266
MS.gene43796.t1 MTR_4g116330 46.543 376 140 11 5 373 17 338 1.02e-82 256
MS.gene43796.t1 MTR_4g121580 45.767 378 160 11 1 369 1 342 1.04e-82 258
MS.gene43796.t1 MTR_1g055195 49.667 300 119 8 84 374 200 476 7.49e-79 251
MS.gene43796.t1 MTR_8g013010 50.000 278 122 5 2 275 45 309 3.52e-76 238
MS.gene43796.t1 MTR_4g117870 45.902 305 120 6 67 371 3 262 4.63e-75 234
MS.gene43796.t1 MTR_1g055165 41.417 367 152 9 10 373 9 315 2.05e-73 231
MS.gene43796.t1 MTR_7g079370 44.034 352 163 12 40 372 16 352 1.32e-67 218
MS.gene43796.t1 MTR_7g079400 45.425 306 141 11 78 372 43 333 7.46e-65 210
MS.gene43796.t1 MTR_8g102520 40.318 377 158 15 4 372 1 318 6.72e-63 204
MS.gene43796.t1 MTR_4g118370 48.207 251 99 8 123 371 34 255 1.01e-62 202
MS.gene43796.t1 MTR_2g048580 38.196 377 186 15 4 372 1 338 9.36e-59 194
MS.gene43796.t1 MTR_4g116320 52.941 221 89 7 154 370 43 252 2.21e-58 191
MS.gene43796.t1 MTR_1g055250 44.130 247 111 9 149 387 49 276 3.08e-53 179
MS.gene43796.t1 MTR_4g116340 44.758 248 103 6 2 240 25 247 2.27e-52 175
MS.gene43796.t1 MTR_4g118400 39.185 319 146 11 63 370 13 294 5.07e-51 173
MS.gene43796.t1 MTR_1g055175 49.246 199 89 7 178 373 9 198 5.37e-50 167
MS.gene43796.t1 MTR_8g040935 46.445 211 101 5 165 371 1 203 3.71e-46 157
MS.gene43796.t1 MTR_6g463430 44.811 212 101 5 165 373 1 199 2.84e-44 152
MS.gene43796.t1 MTR_2g021150 29.101 378 227 12 10 368 13 368 3.85e-38 141
MS.gene43796.t1 MTR_7g117720 44.444 207 87 9 5 204 4 189 2.81e-37 136
MS.gene43796.t1 MTR_7g117720 53.271 107 43 3 272 371 166 272 1.68e-22 96.3
MS.gene43796.t1 MTR_4g117530 39.381 226 85 7 148 371 73 248 3.91e-37 135
MS.gene43796.t1 MTR_7g079420 39.286 280 110 12 109 372 905 1140 1.55e-36 142
MS.gene43796.t1 MTR_4g114700 37.736 265 103 7 110 367 9 218 2.44e-33 125
MS.gene43796.t1 MTR_4g117430 43.976 166 77 5 110 275 3 152 3.79e-32 119
MS.gene43796.t1 MTR_5g023000 61.702 94 36 0 278 371 1 94 1.25e-31 115
MS.gene43796.t1 MTR_4g118360 54.839 124 49 4 250 370 1 120 3.04e-31 115
MS.gene43796.t1 MTR_5g069120 44.262 183 79 8 21 186 1 177 9.85e-31 116
MS.gene43796.t1 MTR_4g108820 30.233 301 162 10 10 310 41 293 2.89e-30 118
MS.gene43796.t1 MTR_1g097330 28.075 374 239 13 11 373 16 370 2.78e-29 117
MS.gene43796.t1 MTR_7g079450 47.857 140 63 5 235 372 2 133 5.71e-29 110
MS.gene43796.t1 MTR_2g021190 28.013 307 198 7 11 309 21 312 1.58e-28 115
MS.gene43796.t1 MTR_4g109290 41.667 180 67 5 4 178 1 147 5.61e-28 108
MS.gene43796.t1 MTR_8g098830 43.023 172 82 7 178 345 35 194 2.59e-27 108
MS.gene43796.t1 MTR_4g107780 27.568 370 236 15 11 368 36 385 1.92e-25 107
MS.gene43796.t1 MTR_4g107820 27.568 370 236 15 11 368 36 385 2.01e-25 106
MS.gene43796.t1 MTR_4g107780 27.568 370 236 15 11 368 36 385 2.01e-25 106
MS.gene43796.t1 MTR_4g107820 27.568 370 236 15 11 368 36 385 2.03e-25 107
MS.gene43796.t1 MTR_1g097490 27.989 368 229 13 11 368 49 390 2.71e-25 106
MS.gene43796.t1 MTR_5g022420 28.247 308 186 11 10 310 26 305 4.26e-25 105
MS.gene43796.t1 MTR_2g029990 28.664 307 194 12 12 309 52 342 1.75e-24 104
MS.gene43796.t1 MTR_1g094210 28.877 374 218 15 11 368 57 398 3.00e-24 103
MS.gene43796.t1 MTR_6g053260 30.154 325 181 15 11 315 337 635 3.29e-24 105
MS.gene43796.t1 MTR_1g094210 28.926 363 209 15 11 357 57 386 1.02e-23 102
MS.gene43796.t1 MTR_1g050542 27.744 328 197 14 11 324 58 359 1.56e-23 101
MS.gene43796.t1 MTR_2g055970 27.640 322 201 14 5 317 205 503 1.61e-23 102
MS.gene43796.t1 MTR_0129s0050 25.240 416 251 13 5 374 8 409 1.92e-23 101
MS.gene43796.t1 MTR_2g426090 28.086 324 190 14 8 305 4 310 2.54e-23 100
MS.gene43796.t1 MTR_2g021155 28.863 343 209 13 11 339 36 357 3.33e-23 102
MS.gene43796.t1 MTR_3g009310 30.392 306 183 10 11 306 42 327 3.40e-23 100
MS.gene43796.t1 MTR_4g023430 60.870 92 34 2 1 91 32 122 4.95e-23 96.7
MS.gene43796.t1 MTR_4g023430 55.696 79 32 1 298 373 141 219 2.92e-21 91.7
MS.gene43796.t1 MTR_5g057690 28.025 314 186 14 11 315 46 328 5.64e-23 99.8
MS.gene43796.t1 MTR_1g097560 28.693 352 198 17 11 344 36 352 6.89e-23 99.4
MS.gene43796.t1 MTR_2g031640 27.445 317 181 12 11 305 6 295 7.68e-23 99.4
MS.gene43796.t1 MTR_2g031720 26.150 413 243 16 7 387 2 384 8.78e-23 99.4
MS.gene43796.t1 MTR_6g021880 28.261 368 224 14 23 368 32 381 1.02e-22 99.0
MS.gene43796.t1 MTR_3g007270 28.213 319 185 13 11 306 47 344 1.22e-22 99.0
MS.gene43796.t1 MTR_6g004660 30.841 321 178 12 11 307 16 316 1.56e-22 98.2
MS.gene43796.t1 MTR_2g021210 27.331 311 196 11 5 309 78 364 2.42e-22 98.2
MS.gene43796.t1 MTR_5g057790 28.173 323 184 12 11 315 46 338 2.46e-22 97.8
MS.gene43796.t1 MTR_2g046830 28.254 315 179 14 14 310 28 313 3.90e-22 97.4
MS.gene43796.t1 MTR_3g011100 27.879 330 190 13 11 318 235 538 4.67e-22 98.6
MS.gene43796.t1 MTR_2g104340 26.650 409 236 19 5 371 8 394 4.86e-22 97.1
MS.gene43796.t1 MTR_4g122860 34.896 192 87 4 183 370 157 314 6.57e-22 95.9
MS.gene43796.t1 MTR_4g122860 49.533 107 45 4 1 106 60 158 2.35e-14 73.9
MS.gene43796.t1 MTR_0667s0010 27.246 345 173 14 11 313 6 314 9.36e-22 96.3
MS.gene43796.t1 MTR_5g057710 27.329 322 186 12 11 314 46 337 9.61e-22 96.3
MS.gene43796.t1 MTR_2g024110 27.869 305 187 12 11 301 4 289 1.04e-21 95.9
MS.gene43796.t1 MTR_8g467140 28.435 313 183 12 9 305 30 317 1.12e-21 95.1
MS.gene43796.t1 MTR_5g057020 27.974 311 185 14 11 315 46 323 1.21e-21 95.1
MS.gene43796.t1 MTR_2g028160 28.650 363 203 16 11 335 5 349 1.33e-21 96.3
MS.gene43796.t1 MTR_1g068875 26.129 310 193 13 11 306 4 291 1.86e-21 95.1
MS.gene43796.t1 MTR_2g024100 27.463 335 182 13 15 314 11 319 2.04e-21 95.5
MS.gene43796.t1 MTR_3g036290 30.293 307 169 15 11 306 22 294 2.14e-21 94.7
MS.gene43796.t1 MTR_2g078900 26.645 304 183 9 11 301 33 309 2.40e-21 94.7
MS.gene43796.t1 MTR_6g065980 28.000 300 174 11 11 301 16 282 2.41e-21 94.7
MS.gene43796.t1 MTR_4g030830 26.010 396 215 13 3 346 1 370 2.58e-21 95.1
MS.gene43796.t1 MTR_6g090180 26.034 411 241 17 5 369 41 434 2.71e-21 95.5
MS.gene43796.t1 MTR_3g030250 29.206 315 162 14 11 305 37 310 3.04e-21 94.7
MS.gene43796.t1 MTR_1g054725 27.760 317 191 11 10 309 19 314 3.27e-21 94.4
MS.gene43796.t1 MTR_3g006670 29.261 352 193 15 11 340 49 366 3.44e-21 94.7
MS.gene43796.t1 MTR_2g021770 26.485 404 238 14 14 371 15 405 4.78e-21 94.4
MS.gene43796.t1 MTR_3g036335 27.132 387 220 18 11 368 41 394 5.70e-21 94.0
MS.gene43796.t1 MTR_1g115160 27.687 307 195 10 9 310 20 304 6.39e-21 93.6
MS.gene43796.t1 MTR_3g007360 29.467 319 175 14 14 311 55 344 6.45e-21 94.0
MS.gene43796.t1 MTR_3g010430 29.677 310 172 14 11 301 36 318 6.51e-21 94.0
MS.gene43796.t1 MTR_3g036430 27.891 294 165 12 11 301 20 269 6.51e-21 93.2
MS.gene43796.t1 MTR_6g053240 28.571 329 186 14 11 315 28 331 7.44e-21 93.6
MS.gene43796.t1 MTR_2g047832 28.657 335 180 16 10 310 28 337 8.45e-21 93.6
MS.gene43796.t1 MTR_2g046920 28.213 319 182 13 10 310 23 312 1.13e-20 92.8
MS.gene43796.t1 MTR_7g017130 28.536 403 235 19 4 371 11 395 1.22e-20 93.2
MS.gene43796.t1 MTR_1g068860 26.518 313 191 13 11 306 4 294 1.22e-20 92.8
MS.gene43796.t1 MTR_3g006570 26.630 368 219 16 11 365 21 350 1.28e-20 92.8
MS.gene43796.t1 MTR_3g024110 28.013 307 183 14 11 307 101 379 1.41e-20 93.2
MS.gene43796.t1 MTR_0044s0300 27.331 311 173 12 11 301 38 315 1.48e-20 92.8
MS.gene43796.t1 MTR_0649s0020 28.822 399 221 17 11 368 11 387 1.63e-20 92.4
MS.gene43796.t1 MTR_0760s0010 27.763 371 217 17 16 368 52 389 1.71e-20 92.4
MS.gene43796.t1 MTR_2g046900 28.615 325 181 13 10 310 27 324 1.71e-20 92.4
MS.gene43796.t1 MTR_3g007410 29.503 322 171 14 14 311 55 344 1.80e-20 92.8
MS.gene43796.t1 MTR_7g066100 26.034 411 231 15 9 370 9 395 2.04e-20 92.4
MS.gene43796.t1 MTR_3g030330 29.000 300 177 13 11 301 20 292 2.33e-20 92.0
MS.gene43796.t1 MTR_5g096630 23.798 416 253 14 5 371 12 412 2.94e-20 92.0
MS.gene43796.t1 MTR_3g023930 30.640 297 164 14 11 301 34 294 2.96e-20 91.7
MS.gene43796.t1 MTR_2g426020 26.593 361 212 14 11 341 6 343 3.21e-20 92.0
MS.gene43796.t1 MTR_4g117550 26.044 407 215 16 5 371 11 371 3.87e-20 91.3
MS.gene43796.t1 MTR_6g086825 26.290 407 252 16 5 371 60 458 5.54e-20 91.7
MS.gene43796.t1 MTR_4g133170 26.814 317 179 14 11 305 4 289 5.99e-20 90.9
MS.gene43796.t1 MTR_7g056003 29.940 334 181 15 14 314 18 331 6.11e-20 91.3
MS.gene43796.t1 MTR_7g007300 28.931 318 175 14 8 309 100 382 6.41e-20 91.3
MS.gene43796.t1 MTR_3g083640 25.926 378 230 13 11 368 55 402 6.57e-20 90.9
MS.gene43796.t1 MTR_7g017170 28.019 414 235 20 4 371 11 407 6.82e-20 90.9
MS.gene43796.t1 MTR_2g028130 25.606 371 214 13 11 341 5 353 7.75e-20 90.9
MS.gene43796.t1 MTR_2g026010 28.349 321 191 12 11 312 4 304 8.35e-20 90.5
MS.gene43796.t1 MTR_7g070880 28.846 364 203 16 11 327 21 375 8.95e-20 90.9
MS.gene43796.t1 MTR_2g028140 27.778 342 184 15 11 308 5 327 8.97e-20 90.9
MS.gene43796.t1 MTR_7g066000 27.473 364 231 13 9 346 23 379 1.04e-19 90.5
MS.gene43796.t1 MTR_7g407070 27.893 337 186 17 11 313 32 345 1.08e-19 90.5
MS.gene43796.t1 MTR_4g031770 27.019 322 180 14 11 309 4 293 1.21e-19 89.7
MS.gene43796.t1 MTR_5g056020 26.066 422 230 18 11 368 17 420 1.42e-19 90.5
MS.gene43796.t1 MTR_7g062100 29.532 342 170 16 11 314 24 332 1.42e-19 90.1
MS.gene43796.t1 MTR_4g061340 27.848 316 185 10 11 307 26 317 1.46e-19 89.7
MS.gene43796.t1 MTR_1g055070 28.205 273 160 9 5 253 43 303 1.99e-19 89.4
MS.gene43796.t1 MTR_5g011200 28.205 312 180 16 11 303 17 303 2.01e-19 89.4
MS.gene43796.t1 MTR_0129s0070 26.142 394 232 15 14 369 20 392 2.03e-19 89.7
MS.gene43796.t1 MTR_7g078900 29.042 334 198 13 14 314 15 342 2.03e-19 89.7
MS.gene43796.t1 MTR_3g030350 26.772 381 231 17 11 368 35 390 2.72e-19 89.0
MS.gene43796.t1 MTR_1g088120 28.070 342 199 13 7 314 6 334 2.98e-19 89.0
MS.gene43796.t1 MTR_4g024890 25.127 394 248 11 7 368 6 384 3.35e-19 88.6
MS.gene43796.t1 MTR_3g007330 29.697 330 172 16 11 319 48 338 3.70e-19 88.6
MS.gene43796.t1 MTR_7g056390 27.457 346 180 13 14 314 21 340 4.68e-19 88.6
MS.gene43796.t1 MTR_3g436150 28.173 323 193 12 11 311 32 337 4.81e-19 88.2
MS.gene43796.t1 MTR_3g083010 25.362 414 221 13 11 372 6 383 5.35e-19 88.6
MS.gene43796.t1 MTR_3g010520 29.677 310 170 15 2 301 15 286 5.46e-19 87.8
MS.gene43796.t1 MTR_2g426070 27.606 355 194 14 12 327 7 337 5.53e-19 88.2
MS.gene43796.t1 MTR_8g101580 26.804 388 216 16 11 368 45 394 6.18e-19 88.2
MS.gene43796.t1 MTR_3g007430 30.000 310 174 16 13 305 45 328 6.39e-19 87.8
MS.gene43796.t1 MTR_7g070830 28.571 343 193 15 11 310 21 354 6.41e-19 88.2
MS.gene43796.t1 MTR_5g046300 26.214 309 193 11 11 309 4 287 7.59e-19 87.4
MS.gene43796.t1 MTR_5g046290 26.214 309 193 11 11 309 4 287 7.59e-19 87.4
MS.gene43796.t1 MTR_3g014540 26.371 383 223 15 11 368 29 377 9.87e-19 87.4
MS.gene43796.t1 MTR_7g078860 28.324 346 196 13 3 314 1 328 1.05e-18 87.4
MS.gene43796.t1 MTR_5g046260 26.159 302 172 13 11 309 4 257 1.07e-18 86.3
MS.gene43796.t1 MTR_3g013740 28.313 332 184 14 11 313 44 350 1.14e-18 87.4
MS.gene43796.t1 MTR_3g011120 26.455 378 234 16 10 363 13 370 1.60e-18 86.7
MS.gene43796.t1 MTR_2g021252 23.529 374 232 12 13 369 49 385 1.63e-18 86.7
MS.gene43796.t1 MTR_1g068835 26.282 312 191 13 11 306 4 292 1.68e-18 86.7
MS.gene43796.t1 MTR_7g056820 26.273 373 215 16 11 347 7 355 1.79e-18 86.7
MS.gene43796.t1 MTR_3g010590 27.508 309 165 15 11 301 39 306 2.47e-18 86.3
MS.gene43796.t1 MTR_6g027910 28.931 318 179 15 11 301 9 306 2.65e-18 85.9
MS.gene43796.t1 MTR_1g054575 28.000 300 181 13 11 300 52 326 2.98e-18 87.0
MS.gene43796.t1 MTR_0707s0020 24.545 440 236 16 9 370 24 445 3.09e-18 86.3
MS.gene43796.t1 MTR_4g055060 28.797 316 182 13 11 306 30 322 3.10e-18 85.9
MS.gene43796.t1 MTR_7g070440 26.844 339 200 15 14 325 10 327 3.21e-18 85.9
MS.gene43796.t1 MTR_7g056760 25.310 403 239 14 9 368 21 404 3.42e-18 85.9
MS.gene43796.t1 MTR_0464s0020 28.488 344 186 15 14 314 26 352 4.48e-18 85.9
MS.gene43796.t1 MTR_3g009240 29.618 314 173 14 11 307 36 318 4.60e-18 85.5
MS.gene43796.t1 MTR_7g013590 29.781 319 186 13 13 315 38 334 4.73e-18 85.5
MS.gene43796.t1 MTR_7g055870 25.176 425 223 17 14 360 16 423 4.95e-18 85.5
MS.gene43796.t1 MTR_4g129190 27.492 331 190 12 11 310 6 317 5.08e-18 85.5
MS.gene43796.t1 MTR_8g464770 26.010 396 237 18 6 370 7 377 5.62e-18 85.1
MS.gene43796.t1 MTR_3g009260 30.573 314 167 17 11 307 41 320 5.73e-18 85.1
MS.gene43796.t1 MTR_0242s0060 25.872 344 204 12 3 310 1 329 5.90e-18 85.5
MS.gene43796.t1 MTR_0242s0040 25.872 344 204 12 3 310 1 329 5.90e-18 85.5
MS.gene43796.t1 MTR_3g030240 25.134 374 210 13 11 370 40 357 6.28e-18 85.1
MS.gene43796.t1 MTR_3g014570 27.052 329 182 15 11 314 29 324 6.66e-18 84.7
MS.gene43796.t1 MTR_2g025420 26.630 368 212 15 11 337 6 356 6.91e-18 85.1
MS.gene43796.t1 MTR_3g072470 26.724 348 179 12 14 314 22 340 7.51e-18 85.1
MS.gene43796.t1 MTR_3g006500 26.368 402 224 19 1 368 6 369 7.97e-18 84.7
MS.gene43796.t1 MTR_7g077970 27.507 349 182 16 14 314 10 335 8.12e-18 85.1
MS.gene43796.t1 MTR_8g099460 27.887 355 197 16 11 337 5 328 8.87e-18 84.7
MS.gene43796.t1 MTR_1g114700 27.187 320 190 13 11 311 29 324 9.10e-18 84.7
MS.gene43796.t1 MTR_3g010920 27.393 303 168 13 11 301 44 306 9.34e-18 84.3
MS.gene43796.t1 MTR_2g028110 27.554 323 177 13 11 305 4 297 1.02e-17 84.3
MS.gene43796.t1 MTR_3g024040 25.418 299 198 9 18 314 38 313 1.22e-17 84.0
MS.gene43796.t1 MTR_7g055930 25.412 425 222 18 14 360 16 423 1.36e-17 84.3
MS.gene43796.t1 MTR_8g046200 23.788 433 252 12 2 373 7 422 1.62e-17 84.0
MS.gene43796.t1 MTR_7g062060 24.038 416 242 15 6 369 7 400 1.74e-17 84.0
MS.gene43796.t1 MTR_2g426060 25.826 333 183 14 11 305 6 312 2.05e-17 83.6
MS.gene43796.t1 MTR_1g056710 27.171 357 201 16 11 344 34 354 2.17e-17 83.6
MS.gene43796.t1 MTR_5g096710 27.795 331 192 14 11 314 23 333 2.40e-17 83.6
MS.gene43796.t1 MTR_2g025960 28.889 225 120 10 107 305 5 215 2.49e-17 82.4
MS.gene43796.t1 MTR_6g007135 27.177 379 234 15 14 368 29 389 2.52e-17 83.2
MS.gene43796.t1 MTR_1g055200 49.398 83 38 2 106 186 5 85 2.57e-17 77.4
MS.gene43796.t1 MTR_3g010970 26.471 306 169 13 13 301 50 316 2.67e-17 83.2
MS.gene43796.t1 MTR_3g011020 26.959 319 188 12 11 315 28 315 3.24e-17 82.8
MS.gene43796.t1 MTR_3g013950 26.997 363 228 14 14 346 9 364 4.15e-17 82.8
MS.gene43796.t1 MTR_0267s0050 27.147 361 228 14 14 346 9 362 4.63e-17 82.4
MS.gene43796.t1 MTR_6g055210 27.879 330 178 13 10 300 21 329 5.50e-17 82.8
MS.gene43796.t1 MTR_2g021950 25.707 389 232 17 19 369 24 393 6.57e-17 82.0
MS.gene43796.t1 MTR_5g007610 28.107 338 184 15 11 319 41 348 7.26e-17 82.0
MS.gene43796.t1 MTR_4g019990 26.686 341 196 12 10 317 5 324 7.70e-17 81.6
MS.gene43796.t1 MTR_2g461450 27.010 311 196 11 11 314 18 304 8.96e-17 81.3
MS.gene43796.t1 MTR_7g056290 26.627 338 193 12 14 314 25 344 1.01e-16 81.6
MS.gene43796.t1 MTR_4g028750 23.708 329 210 10 5 301 10 329 1.03e-16 81.6
MS.gene43796.t1 MTR_2g066200 24.121 398 254 15 5 371 6 386 1.06e-16 81.3
MS.gene43796.t1 MTR_7g028660 27.566 341 194 12 1 310 1 319 1.12e-16 81.3
MS.gene43796.t1 MTR_5g021880 25.526 380 193 13 11 320 39 398 1.15e-16 82.0
MS.gene43796.t1 MTR_5g021880 25.526 380 193 13 11 320 39 398 1.30e-16 81.6
MS.gene43796.t1 MTR_1g007410 25.519 337 201 13 6 305 17 340 1.35e-16 81.3
MS.gene43796.t1 MTR_5g021880 25.833 360 178 12 11 301 39 378 1.45e-16 81.6
MS.gene43796.t1 MTR_8g041270 24.272 412 251 14 5 371 9 404 1.48e-16 81.3
MS.gene43796.t1 MTR_7g056503 25.581 387 251 13 10 368 20 397 1.49e-16 80.9
MS.gene43796.t1 MTR_4g102410 24.198 405 248 14 10 371 60 448 1.51e-16 81.3
MS.gene43796.t1 MTR_2g021800 23.558 416 252 15 6 369 11 412 1.53e-16 81.3
MS.gene43796.t1 MTR_8g062660 26.019 319 185 13 6 299 17 309 1.92e-16 81.6
MS.gene43796.t1 MTR_7g078840 27.322 366 195 15 4 314 3 352 1.95e-16 80.9
MS.gene43796.t1 MTR_3g010390 26.462 325 189 14 11 306 33 336 2.31e-16 80.5
MS.gene43796.t1 MTR_5g059430 24.286 420 252 16 4 371 19 424 2.43e-16 80.5
MS.gene43796.t1 MTR_6g017280 25.305 328 210 11 9 314 7 321 2.49e-16 80.1
MS.gene43796.t1 MTR_5g096910 23.232 396 250 15 10 371 16 391 2.51e-16 80.5
MS.gene43796.t1 MTR_4g028660 24.642 349 191 16 5 305 10 334 2.63e-16 80.1
MS.gene43796.t1 MTR_4g027450 24.642 349 191 16 5 305 10 334 2.63e-16 80.1
MS.gene43796.t1 MTR_7g067680 30.719 306 154 16 11 301 49 311 2.66e-16 80.1
MS.gene43796.t1 MTR_4g013180 26.331 357 204 14 9 325 9 346 2.70e-16 80.5
MS.gene43796.t1 MTR_2g078850 26.623 308 177 11 13 301 32 309 2.79e-16 80.1
MS.gene43796.t1 MTR_4g037465 26.667 375 221 14 11 350 21 376 3.00e-16 80.1
MS.gene43796.t1 MTR_4g013185 27.078 373 199 15 14 327 13 371 3.00e-16 80.1
MS.gene43796.t1 MTR_8g039500 26.852 324 189 14 5 301 6 308 3.27e-16 79.3
MS.gene43796.t1 MTR_0054s0090 23.430 414 248 15 6 371 12 404 4.13e-16 79.7
MS.gene43796.t1 MTR_7g061060 27.066 351 187 16 6 316 8 329 4.25e-16 79.7
MS.gene43796.t1 MTR_2g006360 28.667 300 153 15 14 308 49 292 4.42e-16 79.3
MS.gene43796.t1 MTR_0115s0020 25.178 421 243 19 1 372 1 398 5.03e-16 79.3
MS.gene43796.t1 MTR_7g066030 26.847 406 241 17 4 369 14 403 5.57e-16 79.3
MS.gene43796.t1 MTR_1g055145 44.898 98 54 0 11 108 33 130 6.92e-16 77.8
MS.gene43796.t1 MTR_1g055145 50.704 71 32 2 219 289 132 199 6.94e-12 65.9
MS.gene43796.t1 MTR_4g122840 39.695 131 44 2 242 372 165 260 7.30e-16 77.4
MS.gene43796.t1 MTR_3g010620 27.541 305 168 13 11 301 36 301 7.37e-16 79.0
MS.gene43796.t1 MTR_4g030760 24.074 378 214 11 5 346 67 407 7.82e-16 79.0
MS.gene43796.t1 MTR_0064s0160 24.874 398 248 17 10 372 41 422 9.14e-16 79.0
MS.gene43796.t1 MTR_2g043400 28.107 338 183 15 14 314 26 340 9.48e-16 78.6
MS.gene43796.t1 MTR_6g048140 29.483 329 150 16 11 301 39 323 1.22e-15 78.2
MS.gene43796.t1 MTR_6g016285 24.941 425 232 14 7 368 17 417 1.25e-15 78.6
MS.gene43796.t1 MTR_2g046800 27.874 348 181 16 11 314 14 335 1.44e-15 78.2
MS.gene43796.t1 MTR_3g024150 27.036 307 175 15 13 301 37 312 1.73e-15 77.8
MS.gene43796.t1 MTR_7g061050 26.061 330 206 11 6 314 8 320 1.74e-15 77.8
MS.gene43796.t1 MTR_3g007300 28.713 303 163 14 11 307 49 304 1.87e-15 77.4
MS.gene43796.t1 MTR_2g038680 24.880 418 233 19 11 371 16 409 2.04e-15 77.8
MS.gene43796.t1 MTR_2g437110 26.619 417 237 17 9 384 20 408 2.27e-15 77.8
MS.gene43796.t1 MTR_4g130330 23.487 413 244 20 6 371 2 389 2.39e-15 77.4
MS.gene43796.t1 MTR_7g066010 26.010 396 220 16 6 369 16 370 2.42e-15 77.0
MS.gene43796.t1 MTR_3g437520 29.226 349 180 18 14 314 26 355 2.46e-15 77.8
MS.gene43796.t1 MTR_0128s0020 26.230 366 226 16 3 342 10 357 2.61e-15 77.4
MS.gene43796.t1 MTR_0054s0100 22.912 419 246 15 6 371 12 406 2.75e-15 77.4
MS.gene43796.t1 MTR_4g033495 25.761 427 236 18 11 388 27 421 3.05e-15 77.4
MS.gene43796.t1 MTR_2g425980 25.994 327 191 13 11 305 5 312 3.27e-15 77.0
MS.gene43796.t1 MTR_5g068040 28.354 328 180 13 7 310 12 308 3.85e-15 76.6
MS.gene43796.t1 MTR_6g013270 26.710 307 192 11 11 303 29 316 4.14e-15 76.6
MS.gene43796.t1 MTR_1g055375 25.545 321 199 12 13 314 6 305 5.27e-15 76.3
MS.gene43796.t1 MTR_3g011060 25.688 327 185 12 11 307 28 326 5.47e-15 76.3
MS.gene43796.t1 MTR_2g047200 25.304 411 235 18 2 368 11 393 5.65e-15 76.3
MS.gene43796.t1 MTR_1g112930 26.910 301 183 12 11 300 25 299 5.91e-15 76.3
MS.gene43796.t1 MTR_5g069760 25.203 369 211 16 9 341 4 343 5.93e-15 75.9
MS.gene43796.t1 MTR_4g055820 25.071 351 197 16 3 305 6 338 6.79e-15 75.9
MS.gene43796.t1 MTR_0129s0120 24.365 394 239 15 14 369 20 392 7.18e-15 75.9
MS.gene43796.t1 MTR_7g060940 26.781 407 226 17 4 367 15 392 7.86e-15 75.9
MS.gene43796.t1 MTR_6g034720 36.923 130 68 3 134 257 54 175 9.63e-15 73.2
MS.gene43796.t1 MTR_4g014370 23.095 433 251 14 1 374 1 410 1.15e-14 75.5
MS.gene43796.t1 MTR_2g104280 25.060 419 237 19 6 371 9 403 1.15e-14 75.5
MS.gene43796.t1 MTR_7g061090 24.118 340 201 11 9 310 20 340 1.16e-14 75.5
MS.gene43796.t1 MTR_7g077990 25.150 334 195 11 7 310 13 321 1.26e-14 75.1
MS.gene43796.t1 MTR_3g023940 27.815 302 188 12 11 301 34 316 1.29e-14 75.1
MS.gene43796.t1 MTR_7g056797 25.076 331 214 9 8 314 20 340 1.45e-14 75.1
MS.gene43796.t1 MTR_3g058480 32.864 213 108 9 11 198 39 241 1.48e-14 74.3
MS.gene43796.t1 MTR_3g013770 25.559 313 193 12 11 305 33 323 1.55e-14 74.7
MS.gene43796.t1 MTR_6g086920 22.907 454 240 16 9 370 36 471 1.64e-14 75.1
MS.gene43796.t1 MTR_7g078040 26.479 355 201 13 3 310 1 342 1.66e-14 75.1
MS.gene43796.t1 MTR_1g029650 23.977 342 208 11 4 314 1 321 1.89e-14 74.7
MS.gene43796.t1 MTR_5g092850 23.795 332 205 13 10 305 15 334 1.95e-14 74.7
MS.gene43796.t1 MTR_7g057270 25.148 338 205 13 11 315 26 348 2.38e-14 74.3
MS.gene43796.t1 MTR_8g073550 32.487 197 109 7 10 192 29 215 2.90e-14 72.0
MS.gene43796.t1 MTR_8g467670 25.320 391 243 17 10 374 13 380 2.94e-14 73.9
MS.gene43796.t1 MTR_6g461660 26.377 345 193 15 5 307 13 338 3.19e-14 73.9
MS.gene43796.t1 MTR_7g056260 26.959 319 190 13 14 307 17 317 3.34e-14 73.2
MS.gene43796.t1 MTR_3g058470 32.367 207 117 7 11 198 37 239 3.47e-14 73.6
MS.gene43796.t1 MTR_7g091640 26.048 334 196 13 9 310 33 347 3.52e-14 73.6
MS.gene43796.t1 MTR_5g069390 23.729 413 258 14 4 373 19 417 4.50e-14 73.9
MS.gene43796.t1 MTR_6g080680 24.250 400 233 15 10 367 18 389 4.99e-14 73.6
MS.gene43796.t1 MTR_8g012090 24.138 319 178 11 14 305 19 300 7.71e-14 72.4
MS.gene43796.t1 MTR_7g077070 24.934 377 230 14 4 337 9 375 8.97e-14 72.8
MS.gene43796.t1 MTR_6g478230 23.515 404 257 16 3 371 19 405 1.00e-13 72.4
MS.gene43796.t1 MTR_4g013175 27.807 374 195 17 14 327 13 371 1.04e-13 72.4
MS.gene43796.t1 MTR_0128s0070 26.524 328 197 15 8 310 19 327 1.19e-13 72.4
MS.gene43796.t1 MTR_2g047892 23.469 392 249 14 11 368 22 396 1.27e-13 72.0
MS.gene43796.t1 MTR_5g010660 27.744 328 172 11 11 313 34 321 1.60e-13 72.0
MS.gene43796.t1 MTR_1g015730 24.928 349 190 11 3 314 1 314 1.61e-13 72.0
MS.gene43796.t1 MTR_3g010870 25.333 300 190 9 11 301 37 311 1.63e-13 71.6
MS.gene43796.t1 MTR_1g009110 24.786 351 229 14 14 345 17 351 1.67e-13 71.6
MS.gene43796.t1 MTR_1g442850 27.829 327 176 14 14 307 8 307 1.97e-13 71.6
MS.gene43796.t1 MTR_8g013005 62.745 51 19 0 321 371 4 54 2.12e-13 65.1
MS.gene43796.t1 MTR_5g008530 63.934 61 20 1 7 67 14 72 2.24e-13 65.5
MS.gene43796.t1 MTR_7g016930 26.667 330 176 15 5 302 10 305 2.30e-13 70.9
MS.gene43796.t1 MTR_8g066440 26.368 402 231 16 11 369 23 402 2.83e-13 71.2
MS.gene43796.t1 MTR_5g069930 25.373 335 189 15 9 310 4 310 3.10e-13 70.9
MS.gene43796.t1 MTR_6g034830 36.842 114 59 1 6 119 15 115 3.25e-13 66.2
MS.gene43796.t1 MTR_4g080200 28.899 218 128 7 14 219 6 208 3.63e-13 70.5
MS.gene43796.t1 MTR_4g023100 64.000 50 16 1 321 370 66 113 4.63e-13 65.9
MS.gene43796.t1 MTR_7g052150 26.257 358 182 16 5 320 16 333 4.85e-13 70.5
MS.gene43796.t1 MTR_6g004210 28.115 313 186 12 24 307 38 340 5.97e-13 70.1
MS.gene43796.t1 MTR_7g055830 24.372 398 207 17 14 371 16 359 6.08e-13 69.7
MS.gene43796.t1 MTR_3g030310 26.752 314 179 14 11 301 21 306 7.39e-13 69.7
MS.gene43796.t1 MTR_5g057040 28.061 196 116 5 11 192 46 230 8.10e-13 70.5
MS.gene43796.t1 MTR_5g097350 22.396 384 239 13 20 369 25 383 1.00e-12 69.3
MS.gene43796.t1 MTR_0097s0030 25.617 324 192 13 11 308 14 314 1.13e-12 69.3
MS.gene43796.t1 MTR_2g047240 25.617 324 192 13 11 308 14 314 1.13e-12 69.3
MS.gene43796.t1 MTR_1g007450 26.590 346 204 16 5 311 6 340 1.43e-12 68.9
MS.gene43796.t1 MTR_3g006530 24.675 308 192 13 11 301 40 324 1.44e-12 68.9
MS.gene43796.t1 MTR_7g022600 26.269 335 200 13 14 310 26 351 1.44e-12 68.9
MS.gene43796.t1 MTR_6g048120 25.240 313 190 12 11 301 36 326 1.45e-12 68.9
MS.gene43796.t1 MTR_1g068905 27.148 291 157 13 11 281 4 259 1.45e-12 68.2
MS.gene43796.t1 MTR_3g464500 26.667 360 192 16 10 325 26 357 1.55e-12 68.9
MS.gene43796.t1 MTR_5g048160 24.324 407 244 19 11 372 4 391 1.58e-12 68.9
MS.gene43796.t1 MTR_7g091630 24.773 331 208 11 9 310 30 348 1.81e-12 68.9
MS.gene43796.t1 MTR_3g009250 32.124 193 104 8 11 191 41 218 1.91e-12 67.0
MS.gene43796.t1 MTR_7g055987 26.911 327 183 14 14 314 23 319 2.28e-12 68.2
MS.gene43796.t1 MTR_5g072060 25.067 375 209 14 10 346 5 345 2.41e-12 68.9
MS.gene43796.t1 MTR_3g096250 34.132 167 95 6 11 167 47 208 2.79e-12 67.8
MS.gene43796.t1 MTR_7g056200 27.245 323 181 13 7 307 19 309 3.44e-12 67.8
MS.gene43796.t1 MTR_2g066170 22.785 395 261 13 5 371 6 384 4.58e-12 67.4
MS.gene43796.t1 MTR_5g023570 40.541 111 51 4 10 115 36 136 4.73e-12 63.9
MS.gene43796.t1 MTR_3g011650 32.174 230 113 13 13 227 81 282 5.40e-12 66.2
MS.gene43796.t1 MTR_8g013000 25.405 370 217 14 4 332 3 354 6.09e-12 67.0
MS.gene43796.t1 MTR_7g061010 25.248 404 230 17 4 367 15 386 6.51e-12 67.0
MS.gene43796.t1 MTR_5g057643 28.571 196 115 5 11 192 46 230 6.87e-12 65.9
MS.gene43796.t1 MTR_5g027370 22.699 326 205 10 15 311 33 340 7.01e-12 67.0
MS.gene43796.t1 MTR_5g027330 22.671 322 210 10 15 311 44 351 7.13e-12 67.0
MS.gene43796.t1 MTR_1g037540 24.528 371 230 15 18 346 12 374 7.66e-12 66.6
MS.gene43796.t1 MTR_3g464470 25.490 357 197 15 10 325 6 334 9.31e-12 66.2
MS.gene43796.t1 MTR_3g080370 23.691 401 231 14 25 368 35 417 1.06e-11 66.6
MS.gene43796.t1 MTR_1g050308 24.911 281 169 11 5 266 28 285 1.12e-11 65.9
MS.gene43796.t1 MTR_3g058440 28.085 235 134 9 11 227 35 252 1.15e-11 65.5
MS.gene43796.t1 MTR_7g066850 23.494 332 195 11 11 310 23 327 1.22e-11 66.2
MS.gene43796.t1 MTR_7g037670 29.958 237 117 10 11 231 23 226 1.26e-11 65.9
MS.gene43796.t1 MTR_2g043410 27.729 339 183 14 14 314 25 339 1.41e-11 65.9
MS.gene43796.t1 MTR_2g031700 26.407 231 130 10 11 228 6 209 1.92e-11 64.7
MS.gene43796.t1 MTR_4g006350 24.100 361 225 14 11 337 494 839 2.01e-11 66.2
MS.gene43796.t1 MTR_5g043160 26.377 345 193 14 14 310 53 384 2.07e-11 65.5
MS.gene43796.t1 MTR_1g071010 26.769 325 191 16 11 307 15 320 2.12e-11 65.5
MS.gene43796.t1 MTR_7g055977 23.691 401 242 15 9 369 5 381 2.48e-11 65.1
MS.gene43796.t1 MTR_5g022090 24.204 314 172 13 11 302 34 303 2.87e-11 65.1
MS.gene43796.t1 MTR_5g096900 28.374 289 158 16 10 267 11 281 3.88e-11 63.9
MS.gene43796.t1 MTR_2g047878 24.868 378 237 14 7 368 17 363 4.40e-11 64.3
MS.gene43796.t1 MTR_2g010920 24.044 366 199 14 6 314 15 358 4.73e-11 64.3
MS.gene43796.t1 MTR_4g011660 24.927 341 203 14 11 310 19 347 4.94e-11 64.3
MS.gene43796.t1 MTR_5g010550 24.090 357 191 13 11 308 58 393 6.59e-11 64.3
MS.gene43796.t1 MTR_5g010550 24.090 357 191 13 11 308 44 379 7.41e-11 63.9
MS.gene43796.t1 MTR_2g034700 25.373 335 175 14 5 301 8 305 8.29e-11 63.5
MS.gene43796.t1 MTR_4g024870 25.941 239 135 7 12 229 45 262 8.87e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43796.t1 AT3G23880 30.904 343 198 17 11 339 14 331 6.29e-25 105
MS.gene43796.t1 AT3G06240 26.034 411 242 14 2 368 27 419 1.90e-24 104
MS.gene43796.t1 AT4G12560 26.646 319 193 11 11 306 4 304 2.18e-22 98.2
MS.gene43796.t1 AT4G12560 26.646 319 193 11 11 306 4 304 2.18e-22 98.2
MS.gene43796.t1 AT4G12560 26.646 319 193 11 11 306 4 304 2.18e-22 98.2
MS.gene43796.t1 AT3G16210 24.501 351 205 13 10 344 4 310 1.95e-15 77.4
MS.gene43796.t1 AT1G12870 23.529 374 228 17 11 352 33 380 5.63e-15 76.3
MS.gene43796.t1 AT3G10430 26.437 261 150 12 11 256 5 238 5.49e-13 70.1
MS.gene43796.t1 AT3G21120 25.660 265 164 11 9 258 1 247 7.24e-13 69.7
MS.gene43796.t1 AT2G40925 22.327 318 218 12 2 305 18 320 9.65e-13 69.7
MS.gene43796.t1 AT3G07870 24.383 324 185 14 11 301 28 324 2.97e-12 68.2
MS.gene43796.t1 AT3G08750 24.917 301 171 14 11 296 12 272 4.44e-12 67.4
MS.gene43796.t1 AT3G16590 24.590 305 174 14 11 291 5 277 6.24e-12 67.0
MS.gene43796.t1 AT3G17500 24.765 319 207 15 11 319 4 299 1.48e-11 66.2
MS.gene43796.t1 AT3G17500 24.765 319 207 15 11 319 5 300 1.85e-11 65.5
MS.gene43796.t1 AT3G47150 29.412 170 113 2 7 169 8 177 2.07e-11 65.1
MS.gene43796.t1 AT4G04690 25.726 241 134 11 1 227 1 210 3.88e-11 64.7
MS.gene43796.t1 AT3G10240 26.100 341 199 16 11 331 27 334 6.57e-11 63.9

Find 77 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATTGATAACTCCAAATT+TGG 0.106857 5.1:-54551300 MS.gene43796:CDS
GGGGCTATTCACTTCTTAAA+TGG 0.161160 5.1:-54550849 MS.gene43796:CDS
ATAGATAGAGATTCCAAATT+TGG 0.178392 5.1:+54551287 None:intergenic
GCATATCATTTATATGGTTT+TGG 0.189994 5.1:-54551056 MS.gene43796:CDS
TTGCAATCAATAAGAGAATT+TGG 0.215589 5.1:+54551086 None:intergenic
AAAGTAGAGCCGTTCTTAAA+TGG 0.223096 5.1:-54550870 MS.gene43796:CDS
CTTCTTCGTATCATCTTCTT+AGG 0.228771 5.1:+54550360 None:intergenic
GGAGTTATCAATAGAATTCT+AGG 0.261434 5.1:+54551308 None:intergenic
TTAGATGCATATCATTTATA+TGG 0.266019 5.1:-54551062 MS.gene43796:CDS
CTAGTAAAGTGTATGATTTA+TGG 0.269260 5.1:-54550710 MS.gene43796:CDS
AGAATGTGAATTTGCGAAAT+TGG 0.273282 5.1:+54551355 None:intergenic
TCCTTCTGTGGCAGTGAGTA+TGG 0.279382 5.1:-54550444 MS.gene43796:CDS
AATACAACGTGAAATCTTCT+TGG 0.300999 5.1:-54550614 MS.gene43796:CDS
ATAATGGTACGGTTGAAATA+TGG 0.319926 5.1:-54550647 MS.gene43796:CDS
GTGGTTCATGTCTTTGTCTA+TGG 0.320980 5.1:-54551139 MS.gene43796:CDS
TTAGAGGATGTCTCAGTCTA+TGG 0.327181 5.1:-54550683 MS.gene43796:CDS
TATGATTTATGGGTATTTAG+AGG 0.334732 5.1:-54550699 MS.gene43796:CDS
CTGTCCTTTGTCATTATACT+TGG 0.343254 5.1:+54550482 None:intergenic
TAGTAAAGTGTATGATTTAT+GGG 0.344085 5.1:-54550709 MS.gene43796:CDS
ACTTCACAGGTAACATTAGA+AGG 0.356806 5.1:+54551432 None:intergenic
CTCCCTTTGCATTAAATGAT+AGG 0.362061 5.1:+54550773 None:intergenic
GGGCTATTCACTTCTTAAAT+GGG 0.366545 5.1:-54550848 MS.gene43796:CDS
GAATCTCTGCTCTCAATTCC+TGG 0.380489 5.1:-54550399 MS.gene43796:CDS
AGTTAACTTATCATAATCAT+TGG 0.384533 5.1:+54550983 None:intergenic
ATTTAAGAACGGCTCTACTT+TGG 0.386641 5.1:+54550872 None:intergenic
ATGTCTCAGTCTATGGGATA+TGG 0.395291 5.1:-54550676 MS.gene43796:CDS
TATGATAAGTTAACTCGCTT+AGG 0.402329 5.1:-54550975 MS.gene43796:CDS
AATTCTAGGAGTGTGTGTTT+TGG 0.416497 5.1:+54551322 None:intergenic
AAGTAGAGCCGTTCTTAAAT+GGG 0.417008 5.1:-54550869 MS.gene43796:CDS
TGCCTATCATTTAATGCAAA+GGG 0.419648 5.1:-54550775 MS.gene43796:CDS
TCAAATGTGTTTGTAAGTCT+TGG 0.426040 5.1:-54551397 MS.gene43796:CDS
TGGGATATGGCACATGATAA+TGG 0.428223 5.1:-54550663 MS.gene43796:CDS
ATGATAAGTTAACTCGCTTA+GGG 0.434700 5.1:-54550974 MS.gene43796:CDS
CGAGTCAAGGGATGATTACT+TGG 0.438021 5.1:-54551027 MS.gene43796:CDS
TCTTAAATGGGGATATTCAC+TGG 0.448178 5.1:-54550836 MS.gene43796:CDS
TAATTGTTTACCTTATTGCC+TGG 0.449377 5.1:-54550907 MS.gene43796:CDS
TTGCCAGCTGATATAACATC+TGG 0.451556 5.1:-54550735 MS.gene43796:CDS
CTCTCAATTCCTGGTGGTGA+CGG 0.454168 5.1:-54550390 MS.gene43796:CDS
GTTAACTTATCATAATCATT+GGG 0.471250 5.1:+54550984 None:intergenic
GAACCAGATGTTATATCAGC+TGG 0.480523 5.1:+54550732 None:intergenic
TTGCCTATCATTTAATGCAA+AGG 0.491924 5.1:-54550776 MS.gene43796:CDS
TAATGGTACGGTTGAAATAT+GGG 0.505080 5.1:-54550646 MS.gene43796:CDS
TAATGCGTGGAACGAAATTG+AGG 0.520856 5.1:-54550934 MS.gene43796:CDS
AATTTGTGAACTCCAGTGGA+TGG 0.538712 5.1:+54551113 None:intergenic
AAATGGGGATATTCACTGGT+TGG 0.540664 5.1:-54550832 MS.gene43796:CDS
AATGGAGATGATGAAGAAAA+CGG 0.541380 5.1:-54551489 MS.gene43796:CDS
TTTACAGAACTTGATATCAA+AGG 0.542210 5.1:-54551191 MS.gene43796:CDS
AGATGATACGAAGAAGAAGA+AGG 0.542973 5.1:-54550353 MS.gene43796:CDS
GATATCGTTGGAACAGATGC+TGG 0.548194 5.1:-54550516 MS.gene43796:CDS
ATATCAAAGGTTCATGCAGA+GGG 0.552926 5.1:-54551178 MS.gene43796:CDS
AACAGATGCTGGTAATGTAT+TGG 0.556500 5.1:-54550505 MS.gene43796:CDS
TAGAGGATGTCTCAGTCTAT+GGG 0.565351 5.1:-54550682 MS.gene43796:CDS
TACGGTTGAAATATGGGTGA+TGG 0.567614 5.1:-54550640 MS.gene43796:CDS
TCCATACTCACTGCCACAGA+AGG 0.570558 5.1:+54550443 None:intergenic
CTAGAGCATCACTCCTTCTG+TGG 0.572771 5.1:-54550456 MS.gene43796:CDS
TGTCTATGGAATCCATCCAC+TGG 0.573997 5.1:-54551125 MS.gene43796:CDS
GGTTGACCACCGTCACCACC+AGG 0.576896 5.1:+54550381 None:intergenic
TATAAATTTGTGAACTCCAG+TGG 0.583992 5.1:+54551109 None:intergenic
TCAATTCCTGGTGGTGACGG+TGG 0.598082 5.1:-54550387 MS.gene43796:CDS
AATGCGTGGAACGAAATTGA+GGG 0.598090 5.1:-54550933 MS.gene43796:CDS
GGCTATTCACTTCTTAAATG+GGG 0.601850 5.1:-54550847 MS.gene43796:CDS
GATATCAAAGGTTCATGCAG+AGG 0.602085 5.1:-54551179 MS.gene43796:CDS
ATTTGAAAGATTAACTCAAG+AGG 0.606724 5.1:+54551455 None:intergenic
AAGCAAATAAGAGACTTCAC+AGG 0.607636 5.1:+54551419 None:intergenic
GATGTTATATCAGCTGGCAA+AGG 0.615939 5.1:+54550738 None:intergenic
TCAAGTTCTGTAAAAGACTG+TGG 0.621450 5.1:+54551200 None:intergenic
ATCATTGGGATCATATGACA+TGG 0.622977 5.1:+54550998 None:intergenic
ATTCTGTATACATAACCACT+AGG 0.630116 5.1:+54550418 None:intergenic
TGAATAGCCCCATTTAAGAA+CGG 0.634374 5.1:+54550861 None:intergenic
TATGGCACATGATAATGGTA+CGG 0.635656 5.1:-54550658 MS.gene43796:CDS
TCTCATTGAGAGCTAATGCG+TGG 0.638588 5.1:-54550947 MS.gene43796:CDS
TTCTGTATACATAACCACTA+GGG 0.647948 5.1:+54550419 None:intergenic
TTGGCCAAGTATAATGACAA+AGG 0.653383 5.1:-54550486 MS.gene43796:CDS
AGTAGAGCCGTTCTTAAATG+GGG 0.669415 5.1:-54550868 MS.gene43796:CDS
TGATACGAAGAAGAAGAAGG+AGG 0.671930 5.1:-54550350 MS.gene43796:CDS
CAGTGAGTATGGATCCCTAG+TGG 0.694145 5.1:-54550433 MS.gene43796:CDS
TCTCTGCTCTCAATTCCTGG+TGG 0.720941 5.1:-54550396 MS.gene43796:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTAACTTATCATAATCAT+TGG + chr5.1:54550852-54550871 None:intergenic 20.0%
!! GTTAACTTATCATAATCATT+GGG + chr5.1:54550851-54550870 None:intergenic 20.0%
!! TAGTAAAGTGTATGATTTAT+GGG - chr5.1:54551123-54551142 MS.gene43796:CDS 20.0%
!! TTAGATGCATATCATTTATA+TGG - chr5.1:54550770-54550789 MS.gene43796:CDS 20.0%
!!! CATATCATTTATATGGTTTT+GGG - chr5.1:54550777-54550796 MS.gene43796:CDS 20.0%
! ATAGATAGAGATTCCAAATT+TGG + chr5.1:54550548-54550567 None:intergenic 25.0%
! ATTTGAAAGATTAACTCAAG+AGG + chr5.1:54550380-54550399 None:intergenic 25.0%
! CTAGTAAAGTGTATGATTTA+TGG - chr5.1:54551122-54551141 MS.gene43796:CDS 25.0%
! TATGATTTATGGGTATTTAG+AGG - chr5.1:54551133-54551152 MS.gene43796:CDS 25.0%
! TTGCAATCAATAAGAGAATT+TGG + chr5.1:54550749-54550768 None:intergenic 25.0%
! TTTACAGAACTTGATATCAA+AGG - chr5.1:54550641-54550660 MS.gene43796:CDS 25.0%
!! GCATATCATTTATATGGTTT+TGG - chr5.1:54550776-54550795 MS.gene43796:CDS 25.0%
!! TCTATTGATAACTCCAAATT+TGG - chr5.1:54550532-54550551 MS.gene43796:CDS 25.0%
AATACAACGTGAAATCTTCT+TGG - chr5.1:54551218-54551237 MS.gene43796:CDS 30.0%
AGAATGTGAATTTGCGAAAT+TGG + chr5.1:54550480-54550499 None:intergenic 30.0%
ATAATGGTACGGTTGAAATA+TGG - chr5.1:54551185-54551204 MS.gene43796:CDS 30.0%
ATGATAAGTTAACTCGCTTA+GGG - chr5.1:54550858-54550877 MS.gene43796:CDS 30.0%
ATTCTGTATACATAACCACT+AGG + chr5.1:54551417-54551436 None:intergenic 30.0%
GGAGTTATCAATAGAATTCT+AGG + chr5.1:54550527-54550546 None:intergenic 30.0%
TAATGGTACGGTTGAAATAT+GGG - chr5.1:54551186-54551205 MS.gene43796:CDS 30.0%
TAATTGTTTACCTTATTGCC+TGG - chr5.1:54550925-54550944 MS.gene43796:CDS 30.0%
TATAAATTTGTGAACTCCAG+TGG + chr5.1:54550726-54550745 None:intergenic 30.0%
TATGATAAGTTAACTCGCTT+AGG - chr5.1:54550857-54550876 MS.gene43796:CDS 30.0%
TCAAATGTGTTTGTAAGTCT+TGG - chr5.1:54550435-54550454 MS.gene43796:CDS 30.0%
TGCCTATCATTTAATGCAAA+GGG - chr5.1:54551057-54551076 MS.gene43796:CDS 30.0%
TTCTGTATACATAACCACTA+GGG + chr5.1:54551416-54551435 None:intergenic 30.0%
TTGCCTATCATTTAATGCAA+AGG - chr5.1:54551056-54551075 MS.gene43796:CDS 30.0%
!!! ACTCTTGTTTTGTCTTTTGA+TGG - chr5.1:54551247-54551266 MS.gene43796:CDS 30.0%
AAAGTAGAGCCGTTCTTAAA+TGG - chr5.1:54550962-54550981 MS.gene43796:CDS 35.0%
AAGCAAATAAGAGACTTCAC+AGG + chr5.1:54550416-54550435 None:intergenic 35.0%
AAGTAGAGCCGTTCTTAAAT+GGG - chr5.1:54550963-54550982 MS.gene43796:CDS 35.0%
ACAAAAAGTGGTGATATCGT+TGG - chr5.1:54551304-54551323 MS.gene43796:CDS 35.0%
ACTTCACAGGTAACATTAGA+AGG + chr5.1:54550403-54550422 None:intergenic 35.0%
AGATGATACGAAGAAGAAGA+AGG - chr5.1:54551479-54551498 MS.gene43796:CDS 35.0%
ATATCAAAGGTTCATGCAGA+GGG - chr5.1:54550654-54550673 MS.gene43796:CDS 35.0%
ATCATTGGGATCATATGACA+TGG + chr5.1:54550837-54550856 None:intergenic 35.0%
ATTTAAGAACGGCTCTACTT+TGG + chr5.1:54550963-54550982 None:intergenic 35.0%
CTCCCTTTGCATTAAATGAT+AGG + chr5.1:54551062-54551081 None:intergenic 35.0%
CTGTCCTTTGTCATTATACT+TGG + chr5.1:54551353-54551372 None:intergenic 35.0%
CTTCTTCGTATCATCTTCTT+AGG + chr5.1:54551475-54551494 None:intergenic 35.0%
GGCTATTCACTTCTTAAATG+GGG - chr5.1:54550985-54551004 MS.gene43796:CDS 35.0%
GGGCTATTCACTTCTTAAAT+GGG - chr5.1:54550984-54551003 MS.gene43796:CDS 35.0%
TCAAGTTCTGTAAAAGACTG+TGG + chr5.1:54550635-54550654 None:intergenic 35.0%
TCTTAAATGGGGATATTCAC+TGG - chr5.1:54550996-54551015 MS.gene43796:CDS 35.0%
TGAATAGCCCCATTTAAGAA+CGG + chr5.1:54550974-54550993 None:intergenic 35.0%
TTGGCCAAGTATAATGACAA+AGG - chr5.1:54551346-54551365 MS.gene43796:CDS 35.0%
! AACAGATGCTGGTAATGTAT+TGG - chr5.1:54551327-54551346 MS.gene43796:CDS 35.0%
!! AATTCTAGGAGTGTGTGTTT+TGG + chr5.1:54550513-54550532 None:intergenic 35.0%
!! TATGGCACATGATAATGGTA+CGG - chr5.1:54551174-54551193 MS.gene43796:CDS 35.0%
!!! CTCTACTTTGGAATTTTCAC+GGG + chr5.1:54550951-54550970 None:intergenic 35.0%
!!! GCTCTACTTTGGAATTTTCA+CGG + chr5.1:54550952-54550971 None:intergenic 35.0%
AAATGGGGATATTCACTGGT+TGG - chr5.1:54551000-54551019 MS.gene43796:CDS 40.0%
AATGCGTGGAACGAAATTGA+GGG - chr5.1:54550899-54550918 MS.gene43796:CDS 40.0%
AATTTGTGAACTCCAGTGGA+TGG + chr5.1:54550722-54550741 None:intergenic 40.0%
AGTAGAGCCGTTCTTAAATG+GGG - chr5.1:54550964-54550983 MS.gene43796:CDS 40.0%
ATGTCTCAGTCTATGGGATA+TGG - chr5.1:54551156-54551175 MS.gene43796:CDS 40.0%
GAACCAGATGTTATATCAGC+TGG + chr5.1:54551103-54551122 None:intergenic 40.0%
GATATCAAAGGTTCATGCAG+AGG - chr5.1:54550653-54550672 MS.gene43796:CDS 40.0%
GATGTTATATCAGCTGGCAA+AGG + chr5.1:54551097-54551116 None:intergenic 40.0%
GGGGCTATTCACTTCTTAAA+TGG - chr5.1:54550983-54551002 MS.gene43796:CDS 40.0%
GTGGTTCATGTCTTTGTCTA+TGG - chr5.1:54550693-54550712 MS.gene43796:CDS 40.0%
TAATGCGTGGAACGAAATTG+AGG - chr5.1:54550898-54550917 MS.gene43796:CDS 40.0%
TACGGTTGAAATATGGGTGA+TGG - chr5.1:54551192-54551211 MS.gene43796:CDS 40.0%
TAGAGGATGTCTCAGTCTAT+GGG - chr5.1:54551150-54551169 MS.gene43796:CDS 40.0%
TGATACGAAGAAGAAGAAGG+AGG - chr5.1:54551482-54551501 MS.gene43796:CDS 40.0%
TGGGATATGGCACATGATAA+TGG - chr5.1:54551169-54551188 MS.gene43796:CDS 40.0%
TTAGAGGATGTCTCAGTCTA+TGG - chr5.1:54551149-54551168 MS.gene43796:CDS 40.0%
TTGCCAGCTGATATAACATC+TGG - chr5.1:54551097-54551116 MS.gene43796:CDS 40.0%
! GGGTTTATACTTTTGAGCTG+TGG - chr5.1:54550674-54550693 MS.gene43796:CDS 40.0%
!! CACTTTTTGTACCGTATGTC+GGG + chr5.1:54551294-54551313 None:intergenic 40.0%
!! TTTTGGGTATGACGAGTCAA+GGG - chr5.1:54550793-54550812 MS.gene43796:CDS 40.0%
!!! CACTATTTTTGCCCGACATA+CGG - chr5.1:54551280-54551299 MS.gene43796:CDS 40.0%
!!! CCACTTTTTGTACCGTATGT+CGG + chr5.1:54551295-54551314 None:intergenic 40.0%
CCGACATACGGTACAAAAAG+TGG - chr5.1:54551292-54551311 MS.gene43796:CDS 45.0%
CGAGTCAAGGGATGATTACT+TGG - chr5.1:54550805-54550824 MS.gene43796:CDS 45.0%
GAATCTCTGCTCTCAATTCC+TGG - chr5.1:54551433-54551452 MS.gene43796:CDS 45.0%
GATATCGTTGGAACAGATGC+TGG - chr5.1:54551316-54551335 MS.gene43796:CDS 45.0%
GTCGGGCAAAAATAGTGAGT+GGG + chr5.1:54551277-54551296 None:intergenic 45.0%
TCTCATTGAGAGCTAATGCG+TGG - chr5.1:54550885-54550904 MS.gene43796:CDS 45.0%
TGTCGGGCAAAAATAGTGAG+TGG + chr5.1:54551278-54551297 None:intergenic 45.0%
TGTCTATGGAATCCATCCAC+TGG - chr5.1:54550707-54550726 MS.gene43796:CDS 45.0%
!! GTTTTGGGTATGACGAGTCA+AGG - chr5.1:54550792-54550811 MS.gene43796:CDS 45.0%
!! TCTAGGAGTGTGTGTTTTGG+CGG + chr5.1:54550510-54550529 None:intergenic 45.0%
CAGTGAGTATGGATCCCTAG+TGG - chr5.1:54551399-54551418 MS.gene43796:CDS 50.0%
TCCATACTCACTGCCACAGA+AGG + chr5.1:54551392-54551411 None:intergenic 50.0%
TCCTTCTGTGGCAGTGAGTA+TGG - chr5.1:54551388-54551407 MS.gene43796:CDS 50.0%
TCTCTGCTCTCAATTCCTGG+TGG - chr5.1:54551436-54551455 MS.gene43796:CDS 50.0%
! CTAGAGCATCACTCCTTCTG+TGG - chr5.1:54551376-54551395 MS.gene43796:CDS 50.0%
! CTCTCAATTCCTGGTGGTGA+CGG - chr5.1:54551442-54551461 MS.gene43796:CDS 50.0%
! TTTTCACGGGCCAGGCAATA+AGG + chr5.1:54550938-54550957 None:intergenic 50.0%
!!! CTTTGGAATTTTCACGGGCC+AGG + chr5.1:54550946-54550965 None:intergenic 50.0%
!! TCAATTCCTGGTGGTGACGG+TGG - chr5.1:54551445-54551464 MS.gene43796:CDS 55.0%
GGTTGACCACCGTCACCACC+AGG + chr5.1:54551454-54551473 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 54550344 54551510 54550344 ID=MS.gene43796
chr5.1 mRNA 54550344 54551510 54550344 ID=MS.gene43796.t1;Parent=MS.gene43796
chr5.1 exon 54550344 54551510 54550344 ID=MS.gene43796.t1.exon1;Parent=MS.gene43796.t1
chr5.1 CDS 54550344 54551510 54550344 ID=cds.MS.gene43796.t1;Parent=MS.gene43796.t1
Gene Sequence

>MS.gene43796

ATGGAGATGATGAAGAAAACGGAGCTATATCTTCCTCTTGAGTTAATCTTTCAAATCCTTCTAATGTTACCTGTGAAGTCTCTTATTTGCTTCAAATGTGTTTGTAAGTCTTGGTTTTCTATTATATCTGATACCAATTTCGCAAATTCACATTCTCAACTTACCGCCAAAACACACACTCCTAGAATTCTATTGATAACTCCAAATTTGGAATCTCTATCTATTGATTTCGAAACATCACTTTACGATGATAGTGCTTCTTATTCATCGAATATTAGTTTTTTGCTTCCACAGTCTTTTACAGAACTTGATATCAAAGGTTCATGCAGAGGGTTTATACTTTTGAGCTGTGGTTCATGTCTTTGTCTATGGAATCCATCCACTGGAGTTCACAAATTTATACCAAATTCTCTTATTGATTGCAATTTAGATGCATATCATTTATATGGTTTTGGGTATGACGAGTCAAGGGATGATTACTTGGTGCTTTCCATGTCATATGATCCCAATGATTATGATAAGTTAACTCGCTTAGGGCTTTTCTCATTGAGAGCTAATGCGTGGAACGAAATTGAGGGTGATAATTGTTTACCTTATTGCCTGGCCCGTGAAAATTCCAAAGTAGAGCCGTTCTTAAATGGGGCTATTCACTTCTTAAATGGGGATATTCACTGGTTGGCTCTTTCTTATGATATATTAACGAATGTTATTCTTGCCTATCATTTAATGCAAAGGGAGCTTCTAGAGTTGCCTTTGCCAGCTGATATAACATCTGGTTCTAGTAAAGTGTATGATTTATGGGTATTTAGAGGATGTCTCAGTCTATGGGATATGGCACATGATAATGGTACGGTTGAAATATGGGTGATGGAAAAATACAACGTGAAATCTTCTTGGACTAAGACTCTTGTTTTGTCTTTTGATGGAATTCCCACTCACTATTTTTGCCCGACATACGGTACAAAAAGTGGTGATATCGTTGGAACAGATGCTGGTAATGTATTGGCCAAGTATAATGACAAAGGACAGCTGCTAGAGCATCACTCCTTCTGTGGCAGTGAGTATGGATCCCTAGTGGTTATGTATACAGAATCTCTGCTCTCAATTCCTGGTGGTGACGGTGGTCAACCTAAGAAGATGATACGAAGAAGAAGAAGGAGGTCTTGA

Protein sequence

>MS.gene43796.t1

MEMMKKTELYLPLELIFQILLMLPVKSLICFKCVCKSWFSIISDTNFANSHSQLTAKTHTPRILLITPNLESLSIDFETSLYDDSASYSSNISFLLPQSFTELDIKGSCRGFILLSCGSCLCLWNPSTGVHKFIPNSLIDCNLDAYHLYGFGYDESRDDYLVLSMSYDPNDYDKLTRLGLFSLRANAWNEIEGDNCLPYCLARENSKVEPFLNGAIHFLNGDIHWLALSYDILTNVILAYHLMQRELLELPLPADITSGSSKVYDLWVFRGCLSLWDMAHDNGTVEIWVMEKYNVKSSWTKTLVLSFDGIPTHYFCPTYGTKSGDIVGTDAGNVLAKYNDKGQLLEHHSFCGSEYGSLVVMYTESLLSIPGGDGGQPKKMIRRRRRRS