AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009892


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009892.t1 MTR_5g070088 90.127 395 30 2 39 433 1 386 0.0 688
MS.gene009892.t1 MTR_5g070080 70.604 381 107 4 54 433 10 386 6.29e-177 499
MS.gene009892.t1 MTR_5g070130 64.083 387 112 4 54 433 11 377 8.25e-167 474
MS.gene009892.t1 MTR_3g103020 54.712 382 149 5 51 430 17 376 1.20e-128 377
MS.gene009892.t1 MTR_5g097210 52.910 378 144 10 54 426 9 357 1.32e-114 340
MS.gene009892.t1 MTR_3g034180 50.518 386 155 10 54 427 123 484 2.05e-110 334
MS.gene009892.t1 MTR_4g023080 48.571 385 155 8 51 430 6 352 1.55e-109 327
MS.gene009892.t1 MTR_3g034160 51.407 391 153 11 54 432 9 374 2.45e-109 327
MS.gene009892.t1 MTR_1g055135 49.610 385 156 9 54 427 13 370 1.35e-106 320
MS.gene009892.t1 MTR_4g109270 48.338 391 156 10 52 430 6 362 1.36e-105 317
MS.gene009892.t1 MTR_4g117750 52.850 386 134 10 54 426 3 353 7.40e-105 320
MS.gene009892.t1 MTR_4g117750 43.411 129 66 1 306 427 350 478 7.18e-19 89.0
MS.gene009892.t1 MTR_3g034130 49.337 377 156 9 54 418 9 362 1.11e-104 315
MS.gene009892.t1 MTR_4g023090 46.650 403 160 10 54 433 16 386 2.54e-104 315
MS.gene009892.t1 MTR_4g109280 51.323 378 151 10 51 425 5 352 2.06e-101 306
MS.gene009892.t1 MTR_4g021785 46.373 386 163 9 51 430 6 353 3.74e-99 300
MS.gene009892.t1 MTR_4g094365 47.632 380 163 10 54 426 8 358 6.48e-98 298
MS.gene009892.t1 MTR_4g117850 49.604 379 156 10 54 425 23 373 2.30e-97 296
MS.gene009892.t1 MTR_4g117770 48.564 383 162 10 57 433 14 367 1.70e-96 294
MS.gene009892.t1 MTR_4g117810 48.564 383 162 10 57 433 14 367 1.70e-96 294
MS.gene009892.t1 MTR_4g023070 44.275 393 180 7 52 430 1 368 2.12e-96 294
MS.gene009892.t1 MTR_4g117780 48.187 386 165 10 54 433 11 367 2.25e-96 294
MS.gene009892.t1 MTR_4g117720 45.939 394 143 10 49 433 46 378 9.35e-96 293
MS.gene009892.t1 MTR_4g023120 44.529 393 179 8 52 430 1 368 6.90e-95 290
MS.gene009892.t1 MTR_8g433040 46.632 386 161 12 54 433 18 364 2.80e-94 288
MS.gene009892.t1 MTR_8g032380 46.632 386 161 12 54 433 18 364 2.80e-94 288
MS.gene009892.t1 MTR_6g060650 47.917 384 165 9 54 426 8 367 1.14e-92 285
MS.gene009892.t1 MTR_4g122850 46.649 373 164 11 65 427 12 359 1.93e-92 284
MS.gene009892.t1 MTR_4g116330 46.053 380 176 10 54 429 23 377 5.32e-91 280
MS.gene009892.t1 MTR_4g023190 45.736 387 165 11 52 430 8 357 1.20e-90 279
MS.gene009892.t1 MTR_4g023150 45.052 384 173 10 52 430 8 358 2.98e-88 273
MS.gene009892.t1 MTR_4g023380 44.390 410 152 11 54 433 16 379 3.84e-88 273
MS.gene009892.t1 MTR_8g032390 46.053 380 152 9 54 428 40 371 4.16e-88 273
MS.gene009892.t1 MTR_4g023440 46.475 383 134 14 54 433 18 332 4.89e-88 271
MS.gene009892.t1 MTR_4g023200 43.817 372 163 11 68 430 24 358 2.17e-87 270
MS.gene009892.t1 MTR_4g118380 47.397 365 164 9 54 405 8 357 6.89e-87 269
MS.gene009892.t1 MTR_8g013010 51.000 300 116 8 37 331 36 309 1.09e-85 265
MS.gene009892.t1 MTR_1g055165 41.689 379 147 8 54 430 10 316 1.37e-78 246
MS.gene009892.t1 MTR_4g116330 42.632 380 150 12 54 429 23 338 4.94e-75 238
MS.gene009892.t1 MTR_1g055195 45.511 323 135 9 121 426 174 472 3.92e-74 240
MS.gene009892.t1 MTR_4g121580 42.119 387 158 13 52 425 9 342 1.09e-71 231
MS.gene009892.t1 MTR_4g023130 48.327 269 117 6 166 430 61 311 2.61e-70 225
MS.gene009892.t1 MTR_4g023130 73.684 57 15 0 51 107 6 62 1.02e-20 92.8
MS.gene009892.t1 MTR_2g048580 39.487 390 172 16 49 428 3 338 3.72e-67 218
MS.gene009892.t1 MTR_7g079370 41.370 365 171 11 83 430 16 354 9.84e-67 217
MS.gene009892.t1 MTR_7g079400 42.500 320 143 10 121 428 43 333 2.15e-64 210
MS.gene009892.t1 MTR_4g117870 40.432 324 134 8 110 433 3 267 1.22e-63 206
MS.gene009892.t1 MTR_4g118370 50.000 246 95 6 184 426 34 254 4.74e-63 204
MS.gene009892.t1 MTR_8g102520 39.062 384 156 14 52 428 6 318 6.62e-62 203
MS.gene009892.t1 MTR_4g118400 39.672 305 140 9 134 426 22 294 1.67e-54 183
MS.gene009892.t1 MTR_1g055250 51.185 211 89 8 210 414 49 251 1.16e-52 179
MS.gene009892.t1 MTR_8g433030 49.545 220 103 6 211 428 125 338 7.47e-51 175
MS.gene009892.t1 MTR_8g433030 60.465 86 31 2 54 139 40 122 5.14e-21 94.0
MS.gene009892.t1 MTR_4g116320 50.000 214 101 4 215 426 43 252 1.15e-50 172
MS.gene009892.t1 MTR_1g055175 47.179 195 96 5 240 430 8 199 1.30e-47 162
MS.gene009892.t1 MTR_6g463430 45.098 204 107 1 226 429 1 199 1.29e-45 157
MS.gene009892.t1 MTR_4g116340 40.800 250 103 6 54 296 36 247 4.67e-44 154
MS.gene009892.t1 MTR_8g040935 44.444 207 106 6 226 427 1 203 9.67e-41 144
MS.gene009892.t1 MTR_7g079420 39.130 276 111 12 170 428 905 1140 7.87e-40 152
MS.gene009892.t1 MTR_7g117720 43.192 213 74 7 54 259 10 182 1.59e-38 140
MS.gene009892.t1 MTR_7g117720 51.000 100 44 3 331 426 173 271 5.08e-19 87.0
MS.gene009892.t1 MTR_4g117530 37.549 253 110 6 180 427 39 248 4.02e-37 136
MS.gene009892.t1 MTR_4g117430 45.399 163 74 5 171 331 3 152 8.07e-37 132
MS.gene009892.t1 MTR_4g114700 37.931 261 103 7 171 423 9 218 1.92e-36 134
MS.gene009892.t1 MTR_1g097490 30.649 385 210 15 54 424 49 390 1.43e-34 132
MS.gene009892.t1 MTR_5g069120 41.919 198 82 6 64 249 1 177 1.24e-33 124
MS.gene009892.t1 MTR_7g079450 49.286 140 63 4 290 428 1 133 3.04e-33 122
MS.gene009892.t1 MTR_4g109290 43.429 175 49 5 54 226 9 135 1.09e-30 117
MS.gene009892.t1 MTR_2g021150 29.912 341 193 14 40 367 3 310 7.77e-30 119
MS.gene009892.t1 MTR_1g097560 29.534 386 209 20 54 424 36 373 5.40e-29 117
MS.gene009892.t1 MTR_3g007410 29.363 361 191 16 57 394 55 374 1.97e-28 116
MS.gene009892.t1 MTR_3g030250 30.606 330 176 15 41 361 25 310 3.94e-28 114
MS.gene009892.t1 MTR_8g098830 39.474 190 102 6 241 426 35 215 5.72e-28 110
MS.gene009892.t1 MTR_3g014540 29.268 328 189 12 53 369 28 323 7.25e-28 114
MS.gene009892.t1 MTR_8g467140 29.268 328 191 11 43 361 22 317 1.72e-27 112
MS.gene009892.t1 MTR_3g007360 28.691 359 196 14 57 394 55 374 2.46e-27 113
MS.gene009892.t1 MTR_3g014570 29.819 332 180 15 53 368 28 322 3.26e-27 112
MS.gene009892.t1 MTR_4g107820 25.547 411 265 14 24 424 6 385 6.49e-27 111
MS.gene009892.t1 MTR_4g107780 25.547 411 265 14 24 424 6 385 6.49e-27 111
MS.gene009892.t1 MTR_4g107820 25.547 411 265 14 24 424 6 385 6.85e-27 112
MS.gene009892.t1 MTR_3g009310 28.707 317 189 10 53 362 41 327 8.03e-27 111
MS.gene009892.t1 MTR_5g057790 29.907 321 182 12 53 363 45 332 8.19e-27 111
MS.gene009892.t1 MTR_4g107780 25.547 411 265 14 24 424 6 385 9.45e-27 111
MS.gene009892.t1 MTR_4g055060 30.240 334 185 14 54 371 30 331 2.46e-26 110
MS.gene009892.t1 MTR_4g061340 29.630 351 188 15 31 363 8 317 2.55e-26 109
MS.gene009892.t1 MTR_4g133170 27.089 347 199 14 54 383 4 313 3.01e-26 109
MS.gene009892.t1 MTR_2g028140 29.532 342 191 15 54 364 5 327 3.67e-26 110
MS.gene009892.t1 MTR_2g021190 28.042 378 221 17 33 397 6 345 3.73e-26 109
MS.gene009892.t1 MTR_4g118360 49.194 124 56 4 306 426 1 120 5.43e-26 102
MS.gene009892.t1 MTR_5g022420 27.679 336 196 14 30 359 4 298 1.11e-25 107
MS.gene009892.t1 MTR_1g094210 28.333 360 204 15 54 400 57 375 1.15e-25 108
MS.gene009892.t1 MTR_1g094210 27.344 384 224 15 54 424 57 398 1.65e-25 107
MS.gene009892.t1 MTR_7g056760 26.716 408 240 13 52 424 21 404 3.01e-25 107
MS.gene009892.t1 MTR_6g053260 28.963 328 200 12 54 374 337 638 3.79e-25 108
MS.gene009892.t1 MTR_6g053240 28.698 338 187 14 54 371 28 331 6.49e-25 106
MS.gene009892.t1 MTR_3g083010 29.805 359 204 14 54 383 6 345 8.63e-25 105
MS.gene009892.t1 MTR_3g006500 29.326 341 174 14 40 361 8 300 1.09e-24 105
MS.gene009892.t1 MTR_2g028160 29.014 355 209 15 54 383 5 341 1.12e-24 105
MS.gene009892.t1 MTR_6g004660 28.895 353 200 14 39 370 1 323 1.40e-24 104
MS.gene009892.t1 MTR_2g055970 27.900 319 186 12 54 361 211 496 1.58e-24 106
MS.gene009892.t1 MTR_7g056390 29.577 355 160 14 57 363 21 333 1.89e-24 105
MS.gene009892.t1 MTR_7g056260 28.857 350 177 12 47 363 7 317 1.90e-24 103
MS.gene009892.t1 MTR_5g057710 28.571 329 192 13 53 371 45 340 3.80e-24 103
MS.gene009892.t1 MTR_1g088120 27.893 337 191 11 57 363 13 327 4.10e-24 103
MS.gene009892.t1 MTR_2g028130 29.722 360 198 17 54 383 5 339 4.51e-24 103
MS.gene009892.t1 MTR_2g078900 29.430 316 174 15 53 357 32 309 6.11e-24 102
MS.gene009892.t1 MTR_4g023430 53.571 112 42 4 54 161 41 146 7.00e-24 99.4
MS.gene009892.t1 MTR_4g023430 52.439 82 35 2 355 433 142 222 3.03e-17 80.9
MS.gene009892.t1 MTR_7g056290 30.259 347 168 15 57 363 25 337 7.23e-24 103
MS.gene009892.t1 MTR_3g007430 29.231 325 168 15 57 361 46 328 9.08e-24 102
MS.gene009892.t1 MTR_5g023000 56.818 88 38 0 340 427 7 94 9.10e-24 95.5
MS.gene009892.t1 MTR_1g054725 27.342 395 230 17 51 424 17 375 1.21e-23 102
MS.gene009892.t1 MTR_2g043410 29.345 351 186 14 46 365 15 334 1.48e-23 102
MS.gene009892.t1 MTR_2g021155 28.338 367 195 13 53 395 35 357 1.65e-23 103
MS.gene009892.t1 MTR_4g108820 27.244 312 164 9 54 364 42 291 1.71e-23 100
MS.gene009892.t1 MTR_7g070440 29.254 335 176 14 57 365 10 309 1.73e-23 101
MS.gene009892.t1 MTR_7g407070 28.947 342 197 14 53 372 31 348 1.77e-23 102
MS.gene009892.t1 MTR_2g024110 25.833 360 223 11 54 400 4 332 1.91e-23 101
MS.gene009892.t1 MTR_6g021880 27.688 372 236 14 65 424 31 381 2.23e-23 101
MS.gene009892.t1 MTR_3g083640 25.420 417 228 19 40 424 37 402 2.30e-23 101
MS.gene009892.t1 MTR_4g070550 28.611 360 203 14 54 383 5 340 3.40e-23 101
MS.gene009892.t1 MTR_7g078860 27.928 333 197 8 54 363 9 321 3.53e-23 100
MS.gene009892.t1 MTR_3g007330 29.755 326 179 14 53 367 47 333 3.61e-23 100
MS.gene009892.t1 MTR_5g011200 28.571 336 185 15 54 371 17 315 3.84e-23 100
MS.gene009892.t1 MTR_7g061060 27.778 342 191 11 47 363 6 316 4.60e-23 100
MS.gene009892.t1 MTR_8g073550 33.175 211 107 9 54 255 30 215 6.07e-23 97.1
MS.gene009892.t1 MTR_0044s0300 28.955 335 180 15 39 357 23 315 9.80e-23 99.8
MS.gene009892.t1 MTR_2g029990 25.907 386 235 18 55 424 52 402 1.10e-22 99.8
MS.gene009892.t1 MTR_4g013185 26.773 437 229 18 57 425 13 426 1.45e-22 99.8
MS.gene009892.t1 MTR_3g036290 28.704 324 181 14 54 370 22 302 1.48e-22 98.6
MS.gene009892.t1 MTR_3g013770 27.485 342 198 14 53 379 32 338 1.62e-22 99.0
MS.gene009892.t1 MTR_1g055070 29.934 304 170 14 51 333 46 327 3.13e-22 98.2
MS.gene009892.t1 MTR_2g046920 29.102 323 181 15 54 364 24 310 3.19e-22 97.8
MS.gene009892.t1 MTR_3g072470 28.448 348 172 12 57 363 22 333 3.54e-22 98.6
MS.gene009892.t1 MTR_0242s0060 27.300 337 205 11 52 364 7 327 3.92e-22 98.2
MS.gene009892.t1 MTR_0242s0040 27.300 337 205 11 52 364 7 327 3.92e-22 98.2
MS.gene009892.t1 MTR_7g007300 26.893 383 232 16 52 424 101 445 4.02e-22 98.6
MS.gene009892.t1 MTR_1g097330 25.989 354 210 10 54 393 16 331 5.58e-22 97.8
MS.gene009892.t1 MTR_3g009240 29.073 313 191 9 53 363 35 318 6.35e-22 97.4
MS.gene009892.t1 MTR_0464s0020 31.143 350 180 17 51 363 20 345 7.28e-22 97.4
MS.gene009892.t1 MTR_6g065980 29.022 317 164 15 53 357 15 282 7.46e-22 96.7
MS.gene009892.t1 MTR_3g006670 28.485 330 194 14 53 371 48 346 7.93e-22 97.4
MS.gene009892.t1 MTR_1g114700 28.923 325 195 16 53 368 28 325 9.33e-22 96.7
MS.gene009892.t1 MTR_1g058190 25.382 327 182 9 51 365 32 308 9.63e-22 96.7
MS.gene009892.t1 MTR_6g048120 27.937 315 194 9 53 357 35 326 1.13e-21 96.7
MS.gene009892.t1 MTR_1g050542 26.271 354 212 14 54 395 58 374 1.19e-21 96.7
MS.gene009892.t1 MTR_2g426070 27.324 355 208 11 55 383 7 337 1.31e-21 96.7
MS.gene009892.t1 MTR_7g060940 29.855 345 170 11 52 363 20 325 1.42e-21 96.3
MS.gene009892.t1 MTR_7g055987 30.395 329 168 14 57 363 23 312 1.48e-21 95.9
MS.gene009892.t1 MTR_3g010590 25.989 354 198 13 20 357 1 306 1.88e-21 95.9
MS.gene009892.t1 MTR_2g043400 29.970 337 179 15 57 364 26 334 1.89e-21 96.3
MS.gene009892.t1 MTR_2g046900 28.182 330 183 16 54 364 28 322 2.05e-21 95.9
MS.gene009892.t1 MTR_6g007135 26.866 335 196 11 47 363 19 322 2.23e-21 95.9
MS.gene009892.t1 MTR_4g129190 27.869 366 186 15 52 377 4 331 2.43e-21 95.5
MS.gene009892.t1 MTR_3g030330 27.937 315 176 13 53 357 19 292 3.31e-21 95.1
MS.gene009892.t1 MTR_3g010390 27.198 364 218 14 53 394 32 370 3.89e-21 95.1
MS.gene009892.t1 MTR_8g101580 25.990 404 226 16 1 383 1 352 3.90e-21 95.1
MS.gene009892.t1 MTR_3g023930 27.987 318 178 12 44 357 24 294 4.90e-21 94.4
MS.gene009892.t1 MTR_2g046830 27.673 318 186 14 57 364 28 311 4.92e-21 94.7
MS.gene009892.t1 MTR_2g047832 29.155 343 175 18 54 364 29 335 5.21e-21 95.1
MS.gene009892.t1 MTR_4g013175 28.090 356 178 13 57 363 13 339 6.03e-21 94.7
MS.gene009892.t1 MTR_2g031640 27.273 352 196 11 54 383 6 319 6.18e-21 94.4
MS.gene009892.t1 MTR_7g077070 27.143 350 197 13 52 363 14 343 8.07e-21 94.4
MS.gene009892.t1 MTR_3g013740 30.029 343 181 18 53 370 43 351 8.72e-21 94.4
MS.gene009892.t1 MTR_5g021880 28.354 395 229 14 27 376 12 397 9.07e-21 94.7
MS.gene009892.t1 MTR_6g027910 26.829 328 188 11 53 357 8 306 9.43e-21 93.6
MS.gene009892.t1 MTR_5g021880 28.354 395 229 14 27 376 12 397 9.94e-21 94.7
MS.gene009892.t1 MTR_5g021880 28.354 395 229 14 27 376 12 397 9.96e-21 94.7
MS.gene009892.t1 MTR_2g021050 28.169 355 181 16 54 383 5 310 1.21e-20 93.6
MS.gene009892.t1 MTR_0667s0010 25.905 359 203 14 54 383 6 330 1.24e-20 93.6
MS.gene009892.t1 MTR_2g025420 27.989 368 200 15 54 383 6 346 1.27e-20 94.0
MS.gene009892.t1 MTR_2g047200 26.536 407 234 17 52 424 18 393 1.38e-20 93.6
MS.gene009892.t1 MTR_3g437520 28.889 360 178 16 51 363 20 348 1.82e-20 93.6
MS.gene009892.t1 MTR_4g013180 28.152 341 188 13 51 363 8 319 1.93e-20 93.6
MS.gene009892.t1 MTR_5g057020 27.381 336 190 13 53 384 45 330 2.20e-20 92.4
MS.gene009892.t1 MTR_7g056503 25.616 406 238 18 54 424 21 397 2.26e-20 92.8
MS.gene009892.t1 MTR_3g436150 28.955 335 196 14 53 370 31 340 2.38e-20 92.8
MS.gene009892.t1 MTR_4g028510 26.065 399 250 13 57 427 19 400 2.90e-20 93.2
MS.gene009892.t1 MTR_0707s0020 24.330 448 250 18 47 426 19 445 3.00e-20 92.8
MS.gene009892.t1 MTR_6g090180 24.612 451 262 14 18 425 19 434 3.67e-20 92.8
MS.gene009892.t1 MTR_2g426090 27.273 352 205 13 57 383 9 334 3.76e-20 92.4
MS.gene009892.t1 MTR_1g068875 25.656 343 210 10 54 383 4 314 5.11e-20 91.7
MS.gene009892.t1 MTR_0054s0090 24.378 402 246 13 62 427 25 404 5.99e-20 91.7
MS.gene009892.t1 MTR_7g078040 27.536 345 205 12 52 363 7 339 7.00e-20 91.7
MS.gene009892.t1 MTR_4g033495 26.176 340 189 12 54 363 27 334 7.36e-20 91.7
MS.gene009892.t1 MTR_2g021252 26.761 355 199 14 57 397 50 357 7.57e-20 91.3
MS.gene009892.t1 MTR_1g115160 27.187 320 185 12 48 359 16 295 7.79e-20 90.9
MS.gene009892.t1 MTR_2g021210 28.173 323 181 15 53 365 83 364 9.57e-20 91.3
MS.gene009892.t1 MTR_0097s0030 26.496 351 208 9 52 381 12 333 9.65e-20 90.9
MS.gene009892.t1 MTR_2g047240 26.496 351 208 9 52 381 12 333 9.65e-20 90.9
MS.gene009892.t1 MTR_5g046300 25.938 320 193 13 54 365 4 287 9.65e-20 90.5
MS.gene009892.t1 MTR_5g046290 25.938 320 193 13 54 365 4 287 9.65e-20 90.5
MS.gene009892.t1 MTR_7g062060 24.631 406 255 13 54 425 12 400 9.82e-20 90.9
MS.gene009892.t1 MTR_4g122860 33.333 192 96 5 246 433 157 320 1.11e-19 90.1
MS.gene009892.t1 MTR_4g122860 55.128 78 32 2 54 130 70 145 8.79e-13 69.7
MS.gene009892.t1 MTR_5g046260 25.240 313 174 12 54 365 4 257 1.29e-19 89.4
MS.gene009892.t1 MTR_3g010430 27.523 327 172 14 53 357 35 318 1.47e-19 90.5
MS.gene009892.t1 MTR_7g056003 29.825 342 170 15 57 363 18 324 1.59e-19 90.5
MS.gene009892.t1 MTR_7g013590 26.727 333 209 9 47 371 29 334 1.84e-19 90.1
MS.gene009892.t1 MTR_0128s0020 28.024 339 184 13 52 363 16 321 2.59e-19 89.7
MS.gene009892.t1 MTR_1g068835 27.301 326 183 12 54 362 4 292 2.59e-19 89.7
MS.gene009892.t1 MTR_4g024890 28.012 332 189 11 54 364 10 312 2.66e-19 89.7
MS.gene009892.t1 MTR_7g070830 28.367 349 201 14 50 363 17 351 2.70e-19 89.7
MS.gene009892.t1 MTR_4g030830 26.329 395 212 16 54 402 9 370 2.76e-19 89.7
MS.gene009892.t1 MTR_3g011100 26.409 337 199 13 53 373 234 537 3.41e-19 90.5
MS.gene009892.t1 MTR_5g057690 27.302 315 188 11 53 363 45 322 3.42e-19 89.4
MS.gene009892.t1 MTR_4g031770 28.012 332 179 17 54 366 4 294 3.64e-19 89.0
MS.gene009892.t1 MTR_1g442850 29.003 331 180 13 57 363 8 307 3.74e-19 89.0
MS.gene009892.t1 MTR_7g066100 27.053 414 232 14 54 426 11 395 4.01e-19 89.0
MS.gene009892.t1 MTR_3g010920 27.954 347 193 18 21 357 7 306 4.42e-19 89.0
MS.gene009892.t1 MTR_3g024110 26.852 324 190 12 53 368 100 384 4.61e-19 89.4
MS.gene009892.t1 MTR_8g062660 26.300 327 177 12 54 355 22 309 4.67e-19 90.1
MS.gene009892.t1 MTR_4g037465 27.642 369 188 15 54 383 21 349 4.76e-19 89.0
MS.gene009892.t1 MTR_2g104340 25.485 412 238 15 54 427 14 394 4.94e-19 89.0
MS.gene009892.t1 MTR_5g068040 28.614 332 167 13 57 363 19 305 5.18e-19 88.6
MS.gene009892.t1 MTR_7g066000 26.632 383 219 15 54 402 25 379 5.32e-19 89.0
MS.gene009892.t1 MTR_0115s0020 24.113 423 254 17 48 428 1 398 5.37e-19 89.0
MS.gene009892.t1 MTR_7g061050 26.667 345 192 11 47 365 6 315 5.41e-19 88.6
MS.gene009892.t1 MTR_3g030350 28.488 344 199 15 32 366 16 321 6.19e-19 88.6
MS.gene009892.t1 MTR_1g055200 50.602 83 39 1 167 249 5 85 6.97e-19 82.0
MS.gene009892.t1 MTR_2g026010 30.544 239 146 10 163 383 85 321 7.24e-19 88.6
MS.gene009892.t1 MTR_8g041270 24.880 418 242 13 54 427 15 404 7.26e-19 88.6
MS.gene009892.t1 MTR_3g010520 28.916 332 173 17 36 357 8 286 8.06e-19 87.8
MS.gene009892.t1 MTR_2g024100 28.221 326 178 13 58 357 11 306 8.61e-19 88.2
MS.gene009892.t1 MTR_6g034720 35.795 176 99 4 142 313 8 173 8.93e-19 85.1
MS.gene009892.t1 MTR_7g056820 27.604 384 224 17 44 403 2 355 9.61e-19 87.8
MS.gene009892.t1 MTR_7g061010 28.496 379 195 14 52 395 20 357 1.03e-18 87.8
MS.gene009892.t1 MTR_1g055145 39.098 133 63 1 37 169 16 130 1.04e-18 86.3
MS.gene009892.t1 MTR_1g055145 45.977 87 43 3 259 345 117 199 1.76e-11 65.1
MS.gene009892.t1 MTR_2g426020 26.344 372 212 16 54 397 6 343 1.11e-18 87.8
MS.gene009892.t1 MTR_3g036335 25.441 397 220 18 53 416 40 393 1.20e-18 87.8
MS.gene009892.t1 MTR_5g069760 26.197 355 188 12 52 376 4 314 1.21e-18 87.4
MS.gene009892.t1 MTR_4g028660 24.181 397 259 12 54 425 16 395 1.21e-18 87.8
MS.gene009892.t1 MTR_4g027450 24.181 397 259 12 54 425 16 395 1.21e-18 87.8
MS.gene009892.t1 MTR_2g426060 27.083 336 188 15 54 361 6 312 1.23e-18 87.8
MS.gene009892.t1 MTR_3g058440 30.159 252 136 10 50 287 31 256 1.39e-18 86.3
MS.gene009892.t1 MTR_7g078900 27.811 338 196 10 57 363 15 335 1.77e-18 87.4
MS.gene009892.t1 MTR_5g057643 29.365 252 143 8 53 296 45 269 1.87e-18 85.1
MS.gene009892.t1 MTR_7g028660 25.876 371 219 9 52 395 9 350 1.92e-18 87.0
MS.gene009892.t1 MTR_5g043160 27.457 346 199 14 57 365 53 383 1.98e-18 87.4
MS.gene009892.t1 MTR_3g036430 25.974 308 168 11 53 357 19 269 2.12e-18 86.3
MS.gene009892.t1 MTR_1g055375 27.596 337 206 17 57 381 7 317 2.20e-18 86.7
MS.gene009892.t1 MTR_3g006570 27.070 314 188 12 53 357 20 301 2.58e-18 86.7
MS.gene009892.t1 MTR_5g037680 25.122 410 226 13 57 424 11 381 2.58e-18 87.0
MS.gene009892.t1 MTR_0649s0020 26.777 422 230 15 46 424 2 387 2.96e-18 86.7
MS.gene009892.t1 MTR_3g024150 27.245 323 167 17 56 357 37 312 2.97e-18 86.7
MS.gene009892.t1 MTR_7g077970 27.378 347 200 13 53 367 6 332 3.00e-18 86.7
MS.gene009892.t1 MTR_6g048140 29.102 323 174 15 53 357 38 323 3.18e-18 86.7
MS.gene009892.t1 MTR_7g070880 27.132 387 201 15 50 383 17 375 3.30e-18 86.7
MS.gene009892.t1 MTR_0128s0070 25.236 424 242 17 40 425 11 397 3.48e-18 86.3
MS.gene009892.t1 MTR_5g059430 24.545 440 257 17 34 427 14 424 3.76e-18 86.7
MS.gene009892.t1 MTR_3g011060 28.134 359 206 18 23 363 2 326 4.29e-18 85.9
MS.gene009892.t1 MTR_3g058480 29.304 273 149 10 54 310 39 283 4.45e-18 85.1
MS.gene009892.t1 MTR_7g057270 26.301 346 188 12 54 363 26 340 5.54e-18 85.9
MS.gene009892.t1 MTR_5g008530 69.492 59 16 1 52 110 16 72 5.90e-18 78.6
MS.gene009892.t1 MTR_5g096710 27.298 359 199 13 52 385 21 342 6.99e-18 85.5
MS.gene009892.t1 MTR_5g056020 25.606 371 209 13 34 363 2 346 7.16e-18 86.3
MS.gene009892.t1 MTR_7g067680 27.974 311 171 12 53 357 48 311 7.74e-18 85.5
MS.gene009892.t1 MTR_0267s0050 26.966 356 208 15 57 383 9 341 8.14e-18 85.1
MS.gene009892.t1 MTR_1g055055 24.179 335 208 12 50 381 22 313 9.55e-18 84.3
MS.gene009892.t1 MTR_0129s0050 24.879 414 244 14 57 427 17 406 9.61e-18 85.1
MS.gene009892.t1 MTR_1g068860 25.538 325 198 11 51 362 1 294 1.09e-17 84.7
MS.gene009892.t1 MTR_0054s0100 23.762 404 248 13 62 427 25 406 1.17e-17 84.7
MS.gene009892.t1 MTR_1g056710 26.149 348 206 13 41 372 17 329 1.38e-17 84.3
MS.gene009892.t1 MTR_3g007270 25.305 328 206 12 54 367 47 349 1.76e-17 84.3
MS.gene009892.t1 MTR_4g008790 28.462 390 202 18 57 395 42 405 1.99e-17 84.7
MS.gene009892.t1 MTR_2g461450 26.606 327 182 9 51 363 15 297 2.11e-17 83.6
MS.gene009892.t1 MTR_7g050480 26.727 333 177 10 52 357 20 312 2.14e-17 84.0
MS.gene009892.t1 MTR_7g050520 26.126 333 179 10 52 357 20 312 2.48e-17 83.6
MS.gene009892.t1 MTR_3g009260 28.571 329 185 13 53 371 40 328 2.52e-17 83.6
MS.gene009892.t1 MTR_0760s0010 28.571 301 181 11 59 358 52 319 2.69e-17 83.6
MS.gene009892.t1 MTR_3g024040 28.889 315 174 17 61 367 38 310 3.04e-17 83.2
MS.gene009892.t1 MTR_2g028110 27.052 329 184 12 54 361 4 297 3.39e-17 83.2
MS.gene009892.t1 MTR_6g016285 25.587 426 237 14 52 424 19 417 3.59e-17 83.6
MS.gene009892.t1 MTR_7g022600 26.389 360 185 14 52 363 21 348 3.95e-17 83.6
MS.gene009892.t1 MTR_6g046320 25.517 435 245 18 13 395 3 410 4.09e-17 83.6
MS.gene009892.t1 MTR_7g066850 27.434 339 188 13 52 365 21 326 5.99e-17 83.2
MS.gene009892.t1 MTR_6g086920 23.160 462 252 18 47 426 31 471 6.21e-17 83.2
MS.gene009892.t1 MTR_7g079160 27.887 355 193 14 57 363 11 350 7.60e-17 82.8
MS.gene009892.t1 MTR_2g078850 26.332 319 175 13 57 357 33 309 7.94e-17 82.0
MS.gene009892.t1 MTR_1g037540 26.829 328 205 13 57 357 8 327 8.45e-17 82.4
MS.gene009892.t1 MTR_3g080370 23.559 399 247 10 68 424 35 417 9.08e-17 82.4
MS.gene009892.t1 MTR_6g086825 24.877 406 256 12 54 427 70 458 9.49e-17 82.4
MS.gene009892.t1 MTR_0064s0160 23.684 418 269 15 39 428 27 422 9.51e-17 82.4
MS.gene009892.t1 MTR_2g031720 26.543 324 192 12 54 361 6 299 1.20e-16 81.6
MS.gene009892.t1 MTR_2g046800 28.696 345 193 19 54 369 14 334 1.21e-16 81.6
MS.gene009892.t1 MTR_7g062100 27.168 346 172 12 54 363 24 325 1.68e-16 81.3
MS.gene009892.t1 MTR_3g058470 25.714 315 171 12 54 357 37 299 1.76e-16 80.9
MS.gene009892.t1 MTR_5g069930 27.049 366 178 18 52 376 4 321 1.92e-16 80.9
MS.gene009892.t1 MTR_6g055210 28.443 334 182 12 54 356 22 329 1.96e-16 81.3
MS.gene009892.t1 MTR_4g055820 26.197 355 209 11 42 361 2 338 2.11e-16 80.5
MS.gene009892.t1 MTR_2g025960 32.420 219 115 12 168 361 5 215 2.41e-16 79.7
MS.gene009892.t1 MTR_7g078840 28.492 358 190 14 52 363 8 345 2.82e-16 80.9
MS.gene009892.t1 MTR_7g056737 27.463 335 184 10 54 365 22 320 2.85e-16 80.9
MS.gene009892.t1 MTR_3g464500 26.287 369 193 14 54 381 27 357 2.91e-16 80.5
MS.gene009892.t1 MTR_2g047892 26.667 345 171 13 52 357 20 321 3.00e-16 80.5
MS.gene009892.t1 MTR_5g069390 23.864 440 255 15 34 429 14 417 4.06e-16 80.9
MS.gene009892.t1 MTR_3g013950 27.793 367 210 17 48 383 1 343 4.92e-16 79.7
MS.gene009892.t1 MTR_5g097680 25.517 435 237 17 57 430 20 428 5.11e-16 80.1
MS.gene009892.t1 MTR_3g010620 26.901 342 198 16 21 357 7 301 5.27e-16 79.7
MS.gene009892.t1 MTR_7g056797 26.606 327 195 8 52 355 21 325 6.69e-16 79.7
MS.gene009892.t1 MTR_7g055977 24.020 408 247 14 51 425 4 381 7.21e-16 79.3
MS.gene009892.t1 MTR_0627s0010 23.866 419 260 14 27 415 12 401 8.30e-16 79.3
MS.gene009892.t1 MTR_3g010870 26.415 318 177 13 54 357 37 311 9.17e-16 79.0
MS.gene009892.t1 MTR_7g066030 25.783 415 233 16 54 425 21 403 9.20e-16 79.0
MS.gene009892.t1 MTR_3g096250 26.250 320 161 11 53 366 46 296 1.02e-15 78.6
MS.gene009892.t1 MTR_2g021800 25.481 416 247 18 54 425 16 412 1.35e-15 78.6
MS.gene009892.t1 MTR_7g052150 27.003 337 186 13 52 363 20 321 1.68e-15 78.2
MS.gene009892.t1 MTR_1g054575 26.948 308 187 13 54 356 52 326 1.68e-15 79.3
MS.gene009892.t1 MTR_5g097350 25.926 378 246 16 63 425 25 383 1.73e-15 78.2
MS.gene009892.t1 MTR_5g009060 27.545 334 208 12 46 357 17 338 1.81e-15 78.2
MS.gene009892.t1 MTR_6g017280 26.377 345 196 15 46 363 1 314 1.92e-15 78.2
MS.gene009892.t1 MTR_3g011650 31.250 240 125 10 53 285 78 284 1.94e-15 76.6
MS.gene009892.t1 MTR_3g006530 26.019 319 189 12 53 357 39 324 1.96e-15 78.2
MS.gene009892.t1 MTR_3g023940 26.332 319 186 13 53 357 33 316 2.13e-15 77.8
MS.gene009892.t1 MTR_7g055870 26.346 353 200 12 57 367 16 350 2.50e-15 77.8
MS.gene009892.t1 MTR_7g035295 26.012 346 168 15 50 363 12 301 2.74e-15 77.4
MS.gene009892.t1 MTR_7g077990 25.000 348 206 12 39 363 3 318 5.79e-15 76.6
MS.gene009892.t1 MTR_7g055930 26.124 356 197 13 57 367 16 350 6.47e-15 76.6
MS.gene009892.t1 MTR_2g437110 27.273 352 181 18 47 363 15 326 6.60e-15 77.0
MS.gene009892.t1 MTR_5g057040 32.222 180 94 6 53 224 45 204 6.81e-15 77.4
MS.gene009892.t1 MTR_2g047878 25.063 395 234 13 46 424 15 363 7.71e-15 75.9
MS.gene009892.t1 MTR_7g052670 26.852 432 241 22 47 424 14 424 1.03e-14 76.3
MS.gene009892.t1 MTR_7g017040 23.645 406 249 14 54 425 16 394 1.06e-14 75.9
MS.gene009892.t1 MTR_1g071010 26.176 340 187 17 54 363 15 320 1.44e-14 75.5
MS.gene009892.t1 MTR_5g010660 26.687 326 195 9 53 370 33 322 1.57e-14 75.9
MS.gene009892.t1 MTR_2g038680 23.981 417 253 14 53 427 15 409 1.59e-14 75.5
MS.gene009892.t1 MTR_4g080200 25.796 314 181 10 57 357 6 280 2.14e-14 74.7
MS.gene009892.t1 MTR_2g031680 24.355 349 201 13 54 380 6 313 2.77e-14 74.3
MS.gene009892.t1 MTR_4g014370 24.766 428 237 17 54 427 11 407 3.18e-14 74.3
MS.gene009892.t1 MTR_1g029650 24.847 326 204 11 57 363 11 314 3.34e-14 74.3
MS.gene009892.t1 MTR_2g104280 25.768 423 238 14 54 430 14 406 4.10e-14 73.9
MS.gene009892.t1 MTR_4g028680 26.879 346 188 16 62 367 24 344 4.19e-14 73.9
MS.gene009892.t1 MTR_4g028750 25.519 337 195 14 54 357 16 329 5.18e-14 73.9
MS.gene009892.t1 MTR_8g046310 25.641 312 207 10 57 361 19 312 5.19e-14 73.6
MS.gene009892.t1 MTR_1g007410 24.706 340 203 13 54 361 22 340 7.55e-14 73.2
MS.gene009892.t1 MTR_4g011660 28.125 224 116 9 52 256 17 214 7.80e-14 73.2
MS.gene009892.t1 MTR_8g099460 26.706 337 186 14 50 361 1 301 1.14e-13 72.8
MS.gene009892.t1 MTR_4g030980 24.798 371 216 12 54 377 15 369 1.15e-13 72.8
MS.gene009892.t1 MTR_7g056717 26.524 328 186 12 59 365 27 320 1.19e-13 72.4
MS.gene009892.t1 MTR_4g117550 24.812 399 231 14 54 427 17 371 1.43e-13 72.4
MS.gene009892.t1 MTR_1g115185 26.647 334 205 15 35 359 22 324 1.62e-13 72.4
MS.gene009892.t1 MTR_6g017270 25.680 331 154 16 51 363 6 262 2.84e-13 70.9
MS.gene009892.t1 MTR_5g048160 23.653 334 209 12 53 357 3 319 2.88e-13 71.2
MS.gene009892.t1 MTR_1g112930 25.949 316 182 15 53 356 24 299 3.13e-13 71.2
MS.gene009892.t1 MTR_4g030110 24.793 363 192 13 32 363 8 320 3.31e-13 71.2
MS.gene009892.t1 MTR_5g097330 24.257 404 248 15 57 425 19 399 3.88e-13 71.2
MS.gene009892.t1 MTR_2g021950 25.148 338 190 14 57 357 19 330 4.04e-13 70.9
MS.gene009892.t1 MTR_3g009250 31.250 240 124 10 53 285 40 245 4.74e-13 68.9
MS.gene009892.t1 MTR_5g027330 22.769 325 219 11 58 367 44 351 4.85e-13 70.9
MS.gene009892.t1 MTR_5g027370 22.769 325 219 11 58 367 33 340 5.92e-13 70.9
MS.gene009892.t1 MTR_7g056170 23.873 377 172 13 51 367 72 393 8.65e-13 70.1
MS.gene009892.t1 MTR_8g012090 23.739 337 205 10 62 385 24 321 8.81e-13 69.3
MS.gene009892.t1 MTR_7g079640 25.000 372 237 16 49 405 8 352 1.28e-12 69.3
MS.gene009892.t1 MTR_6g080680 24.169 331 209 13 54 361 19 330 1.31e-12 69.3
MS.gene009892.t1 MTR_5g096900 29.167 288 168 11 54 323 12 281 1.31e-12 68.9
MS.gene009892.t1 MTR_7g022670 25.305 328 156 12 53 363 22 277 1.39e-12 68.9
MS.gene009892.t1 MTR_0128s0010 26.364 330 192 12 57 363 24 325 1.47e-12 69.3
MS.gene009892.t1 MTR_7g050490 29.224 219 103 8 52 254 6 188 1.62e-12 66.2
MS.gene009892.t1 MTR_1g009110 24.297 391 229 17 53 414 13 365 2.22e-12 68.6
MS.gene009892.t1 MTR_7g077910 29.224 219 119 7 168 363 44 249 2.24e-12 68.2
MS.gene009892.t1 MTR_7g017170 25.444 338 199 13 54 361 18 332 3.89e-12 68.2
MS.gene009892.t1 MTR_7g017130 25.444 338 199 13 54 361 18 332 4.70e-12 67.8
MS.gene009892.t1 MTR_6g004210 25.519 337 181 16 65 363 36 340 7.86e-12 67.0
MS.gene009892.t1 MTR_0097s0060 43.182 88 42 3 21 102 7 92 8.38e-12 62.8
MS.gene009892.t1 MTR_5g023570 34.677 124 58 3 54 177 37 137 9.15e-12 63.2
MS.gene009892.t1 MTR_2g078870 27.320 194 117 8 169 357 58 232 9.52e-12 66.2
MS.gene009892.t1 MTR_3g010440 31.544 149 75 5 53 195 25 152 9.79e-12 66.2
MS.gene009892.t1 MTR_7g056570 26.724 348 166 17 54 363 18 314 1.25e-11 66.6
MS.gene009892.t1 MTR_5g007940 27.536 276 162 10 61 301 34 306 1.75e-11 66.2
MS.gene009892.t1 MTR_7g066010 25.430 291 154 10 54 309 21 283 2.03e-11 65.5
MS.gene009892.t1 MTR_4g030760 25.000 344 204 14 57 381 76 384 2.05e-11 65.9
MS.gene009892.t1 MTR_4g023100 56.140 57 22 2 377 433 66 119 2.16e-11 61.2
MS.gene009892.t1 MTR_4g034860 24.615 325 169 12 81 363 49 339 2.37e-11 65.5
MS.gene009892.t1 MTR_6g065510 27.350 234 124 9 180 383 72 289 2.68e-11 65.1
MS.gene009892.t1 MTR_3g007380 34.395 157 67 8 57 207 33 159 3.20e-11 63.5
MS.gene009892.t1 MTR_7g066080 25.740 338 198 13 54 363 16 328 4.23e-11 65.1
MS.gene009892.t1 MTR_0134s0060 22.222 423 256 13 54 427 12 410 6.24e-11 64.3
MS.gene009892.t1 MTR_3g010870 27.668 253 129 10 21 262 12 221 6.40e-11 63.5
MS.gene009892.t1 MTR_8g013005 56.863 51 22 0 377 427 4 54 7.70e-11 57.8
MS.gene009892.t1 MTR_7g078050 33.099 142 74 5 52 189 4 128 8.94e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009892.t1 AT4G12560 29.730 333 182 11 51 361 1 303 1.21e-28 117
MS.gene009892.t1 AT4G12560 29.730 333 182 11 51 361 1 303 1.21e-28 117
MS.gene009892.t1 AT4G12560 29.730 333 182 11 51 361 1 303 1.21e-28 117
MS.gene009892.t1 AT3G06240 27.387 398 240 15 25 395 13 388 3.06e-23 101
MS.gene009892.t1 AT3G23880 27.451 357 205 14 54 395 14 331 7.75e-21 94.0
MS.gene009892.t1 AT1G30790 27.129 317 196 14 54 357 9 303 6.95e-17 82.4
MS.gene009892.t1 AT2G40925 25.857 321 200 11 53 361 26 320 6.02e-16 79.7
MS.gene009892.t1 AT4G21240 26.625 323 194 14 54 367 36 324 1.55e-14 75.5
MS.gene009892.t1 AT3G10240 25.664 339 208 14 54 383 27 330 1.61e-13 72.4
MS.gene009892.t1 AT1G50870 24.850 334 203 15 24 347 3 298 5.68e-13 70.5
MS.gene009892.t1 AT1G33530 25.664 339 188 15 33 358 80 367 1.40e-12 69.7
MS.gene009892.t1 AT2G16810 27.273 264 160 8 54 311 41 278 4.56e-12 67.0
MS.gene009892.t1 AT2G40910 22.812 377 248 15 1 361 9 358 7.39e-12 67.4
MS.gene009892.t1 AT2G40910 22.663 353 223 14 33 361 39 365 1.21e-11 66.6
MS.gene009892.t1 AT3G07870 24.771 327 195 13 53 357 27 324 1.31e-11 66.6
MS.gene009892.t1 AT3G21120 23.443 273 173 9 52 314 1 247 3.05e-11 65.1
MS.gene009892.t1 AT1G12170 26.141 241 138 8 52 280 4 216 3.70e-11 64.7
MS.gene009892.t1 AT3G52320 26.515 264 156 9 54 309 27 260 3.86e-11 65.1
MS.gene009892.t1 AT5G42430 23.077 312 206 9 53 359 9 291 5.28e-11 64.7
MS.gene009892.t1 AT3G47150 49.123 57 29 0 52 108 10 66 9.61e-11 63.5

Find 81 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATTATTTCTATGGTTT+TGG 0.146874 5.3:+55849615 MS.gene009892:CDS
ATAGAGTTACATTTGAAATA+TGG 0.209026 5.3:+55850009 MS.gene009892:CDS
CCAGATGCAAATTATTTCTA+TGG 0.244716 5.3:+55849609 MS.gene009892:CDS
GCAATCCTGCTCACTCCTTT+TGG 0.280755 5.3:+55850093 MS.gene009892:CDS
CTAGCAGGGCGTATGATTTA+TGG 0.282269 5.3:+55849946 MS.gene009892:CDS
TACATTTGAAATATGGGTTA+TGG 0.283926 5.3:+55850016 MS.gene009892:CDS
GTTATTCAAGCCTCCGTATA+TGG 0.286074 5.3:+55849532 MS.gene009892:CDS
AAAAGACTGTTCTGCGAATA+AGG 0.287100 5.3:-55849780 None:intergenic
GAATCTCTGCTTTCAATTCC+TGG 0.293988 5.3:+55850257 MS.gene009892:CDS
TTGGAATCAATTGTAGTAAA+AGG 0.296434 5.3:-55849585 None:intergenic
TAATCATTCAAATCCTTCTA+AGG 0.308861 5.3:+55849172 MS.gene009892:CDS
ATTTCACTGGTAACCTTAGA+AGG 0.311402 5.3:-55849185 None:intergenic
ACCACCACCAACAAAAGATT+TGG 0.316586 5.3:+55849024 MS.gene009892:CDS
CTGTCCTTTGTCATTATACT+TGG 0.343254 5.3:-55850174 None:intergenic
ATTGATAGAGCTTTGAGATA+TGG 0.347203 5.3:-55849330 None:intergenic
AACAAAACATGAATGGGAAA+TGG 0.349690 5.3:+55848988 None:intergenic
GGACCATTGATTATATCATT+TGG 0.357863 5.3:-55849924 None:intergenic
CGTTTGTGAAATCCGGTAGA+TGG 0.360277 5.3:-55849558 None:intergenic
TAGAGTTACATTTGAAATAT+GGG 0.361693 5.3:+55850010 MS.gene009892:CDS
AAATGAAAGGCAACAATAAC+AGG 0.367546 5.3:-55849870 None:intergenic
ATAGAGGATGTCTCGCTCTA+TGG 0.367959 5.3:+55849973 MS.gene009892:CDS
ATTTGAATGATTAACTCAAT+AGG 0.375401 5.3:-55849162 None:intergenic
CGGTAGATGGATTCCATATA+CGG 0.378320 5.3:-55849545 None:intergenic
CCATAGAAATAATTTGCATC+TGG 0.394587 5.3:-55849609 None:intergenic
AGAGAAATGATTAACTCAAT+AGG 0.416123 5.3:-55849138 None:intergenic
GAAATAATTTGCATCTGGAT+TGG 0.426106 5.3:-55849604 None:intergenic
TTAGTAGAGTCGATCTCAAA+TGG 0.430961 5.3:+55849807 MS.gene009892:CDS
AGGTATTCGTTTGTGAAATC+CGG 0.432435 5.3:-55849565 None:intergenic
TAGCAGGGCGTATGATTTAT+GGG 0.440191 5.3:+55849947 MS.gene009892:CDS
ACAAAACATGAATGGGAAAT+GGG 0.441154 5.3:+55848989 None:intergenic
TTGCCTTTCATTTAATTGAA+AGG 0.455366 5.3:+55849880 MS.gene009892:CDS
TAGTAGAGTCGATCTCAAAT+GGG 0.462940 5.3:+55849808 MS.gene009892:CDS
TCTCAAATGGGGCTATTCAC+TGG 0.466499 5.3:+55849820 MS.gene009892:CDS
TATGATTTATGGGTGTATAG+AGG 0.477400 5.3:+55849957 MS.gene009892:CDS
CGAGTCAACAGATGATTACT+TGG 0.478220 5.3:+55849644 MS.gene009892:CDS
TTTCCTTTCAATTAAATGAA+AGG 0.478785 5.3:-55849883 None:intergenic
TCAAATGCGTTTGTAAGTCA+TGG 0.481976 5.3:+55849220 MS.gene009892:CDS
ATATAATCAATGGTCCTAGC+AGG 0.484409 5.3:+55849931 MS.gene009892:CDS
AATACAATGTGCAATCGTCT+TGG 0.487961 5.3:+55850042 MS.gene009892:CDS
CGACGAGAAACAACAGTCAC+AGG 0.490493 5.3:+55849068 MS.gene009892:CDS
TTGCCAAATGATATAATCAA+TGG 0.496144 5.3:+55849921 MS.gene009892:CDS
AAATGGGGCTATTCACTGGT+TGG 0.496742 5.3:+55849824 MS.gene009892:CDS
CCACCACCAACAAAAGATTT+GGG 0.496965 5.3:+55849025 MS.gene009892:CDS
AGATGGTATGCTATCTCACT+TGG 0.498942 5.3:+55849701 MS.gene009892:CDS
TTTGGCCAAAAGGAGTGAGC+AGG 0.511619 5.3:-55850098 None:intergenic
TAGAGGATGTCTCGCTCTAT+GGG 0.527354 5.3:+55849974 MS.gene009892:CDS
TGAGCTAGGAGTCTGTTCAT+AGG 0.528637 5.3:-55849679 None:intergenic
TAATGTGTGGAGCGCAATTG+AGG 0.536865 5.3:+55849743 MS.gene009892:CDS
TGTTCTGCGAATAAGGCAAA+AGG 0.540223 5.3:-55849773 None:intergenic
AAGAAACATGCGTGGTGCAT+TGG 0.549642 5.3:+55850151 MS.gene009892:CDS
AAACGAATAAGAGATTTCAC+TGG 0.553066 5.3:-55849198 None:intergenic
CAGGATTGCCATCAAAAGAC+AGG 0.556670 5.3:-55850079 None:intergenic
AATTCTATTCGTGTGTGTCG+CGG 0.560402 5.3:-55849295 None:intergenic
CATAAATCATACGCCCTGCT+AGG 0.560538 5.3:-55849945 None:intergenic
CGTATATGGAATCCATCTAC+CGG 0.563507 5.3:+55849546 MS.gene009892:CDS
TGATAGTGCTTCATATCCAA+TGG 0.566505 5.3:+55849377 MS.gene009892:CDS
TAGTTCTTCTTCATCTGACA+TGG 0.567167 5.3:+55849434 MS.gene009892:CDS
ACTTGACCACGGTCACCACC+AGG 0.579292 5.3:-55850275 None:intergenic
GAACAGACTCCTAGCTCAGA+TGG 0.582036 5.3:+55849684 MS.gene009892:CDS
ACAGTCACAGGGACTAGAGA+AGG 0.583782 5.3:+55849080 MS.gene009892:CDS
AAATGTGAATTTGCAAAGTG+AGG 0.588004 5.3:-55849261 None:intergenic
TCTCATTGAGAGCTAATGTG+TGG 0.589751 5.3:+55849730 MS.gene009892:CDS
TCAATTCCTGGTGGTGACCG+TGG 0.592052 5.3:+55850269 MS.gene009892:CDS
GATAGCATACCATCTGAGCT+AGG 0.602731 5.3:-55849693 None:intergenic
AATGTGTGGAGCGCAATTGA+GGG 0.603196 5.3:+55849744 MS.gene009892:CDS
TCTATTCGTGTGTGTCGCGG+CGG 0.603513 5.3:-55849292 None:intergenic
TACATATGCATTGTCACAGT+AGG 0.609801 5.3:-55850213 None:intergenic
ATTCTGTATACATAACCACT+AGG 0.630116 5.3:-55850238 None:intergenic
GATGGTATGCTATCTCACTT+GGG 0.633795 5.3:+55849702 MS.gene009892:CDS
TATAATCAATGGTCCTAGCA+GGG 0.644894 5.3:+55849932 MS.gene009892:CDS
TTCTGTATACATAACCACTA+GGG 0.647948 5.3:-55850237 None:intergenic
GACGAGAAACAACAGTCACA+GGG 0.660124 5.3:+55849069 MS.gene009892:CDS
CAATGCATATGTATCCCTAG+TGG 0.670534 5.3:+55850223 MS.gene009892:CDS
TTGGCCAAGTATAATGACAA+AGG 0.670777 5.3:+55850170 MS.gene009892:CDS
AGTAGAGTCGATCTCAAATG+GGG 0.672893 5.3:+55849809 MS.gene009892:CDS
TCTCTGCTTTCAATTCCTGG+TGG 0.696103 5.3:+55850260 MS.gene009892:CDS
GGACTAGAGAAGGAAGACGC+AGG 0.699323 5.3:+55849090 MS.gene009892:CDS
TAGATGGATTCCATATACGG+AGG 0.723482 5.3:-55849542 None:intergenic
GTGTGGAGCGCAATTGAGGG+TGG 0.724694 5.3:+55849747 MS.gene009892:CDS
CATCTACTTAAACTTGACCA+CGG 0.728443 5.3:-55850286 None:intergenic
ATCGTTGGAAGAAACATGCG+TGG 0.741909 5.3:+55850143 MS.gene009892:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAACTTGATTTTAA+AGG + chr5.3:55849480-55849499 MS.gene009892:CDS 10.0%
!! ATCAAGTTTAAAAAAAGATT+TGG - chr5.3:55849475-55849494 None:intergenic 15.0%
!! TCAAGTTTAAAAAAAGATTT+GGG - chr5.3:55849474-55849493 None:intergenic 15.0%
!! ATTTGAATGATTAACTCAAT+AGG - chr5.3:55849165-55849184 None:intergenic 20.0%
!! TTTCCTTTCAATTAAATGAA+AGG - chr5.3:55849886-55849905 None:intergenic 20.0%
!!! ATAGAGTTACATTTGAAATA+TGG + chr5.3:55850009-55850028 MS.gene009892:CDS 20.0%
!!! CAAATTATTTCTATGGTTTT+GGG + chr5.3:55849616-55849635 MS.gene009892:CDS 20.0%
!!! TAGAGTTACATTTGAAATAT+GGG + chr5.3:55850010-55850029 MS.gene009892:CDS 20.0%
! AGAGAAATGATTAACTCAAT+AGG - chr5.3:55849141-55849160 None:intergenic 25.0%
! AGTTTAAAAAAAGATTTGGG+AGG - chr5.3:55849471-55849490 None:intergenic 25.0%
! ATCAAAAAACTAATGTCCAT+TGG - chr5.3:55849396-55849415 None:intergenic 25.0%
! CCAAAATACTATACAAAAAG+TGG + chr5.3:55850116-55850135 MS.gene009892:CDS 25.0%
! TAATCATTCAAATCCTTCTA+AGG + chr5.3:55849172-55849191 MS.gene009892:CDS 25.0%
! TTGCCAAATGATATAATCAA+TGG + chr5.3:55849921-55849940 MS.gene009892:CDS 25.0%
! TTGCCTTTCATTTAATTGAA+AGG + chr5.3:55849880-55849899 MS.gene009892:CDS 25.0%
! TTGGAATCAATTGTAGTAAA+AGG - chr5.3:55849588-55849607 None:intergenic 25.0%
!! TACATTTGAAATATGGGTTA+TGG + chr5.3:55850016-55850035 MS.gene009892:CDS 25.0%
!!! CCACTTTTTGTATAGTATTT+TGG - chr5.3:55850119-55850138 None:intergenic 25.0%
!!! GCAAATTATTTCTATGGTTT+TGG + chr5.3:55849615-55849634 MS.gene009892:CDS 25.0%
AAACGAATAAGAGATTTCAC+TGG - chr5.3:55849201-55849220 None:intergenic 30.0%
AAATGAAAGGCAACAATAAC+AGG - chr5.3:55849873-55849892 None:intergenic 30.0%
AAATGTGAATTTGCAAAGTG+AGG - chr5.3:55849264-55849283 None:intergenic 30.0%
ATTCTGTATACATAACCACT+AGG - chr5.3:55850241-55850260 None:intergenic 30.0%
TATGATTTATGGGTGTATAG+AGG + chr5.3:55849957-55849976 MS.gene009892:CDS 30.0%
TTCTGTATACATAACCACTA+GGG - chr5.3:55850240-55850259 None:intergenic 30.0%
! CCATAGAAATAATTTGCATC+TGG - chr5.3:55849612-55849631 None:intergenic 30.0%
! GAAATAATTTGCATCTGGAT+TGG - chr5.3:55849607-55849626 None:intergenic 30.0%
! GGACCATTGATTATATCATT+TGG - chr5.3:55849927-55849946 None:intergenic 30.0%
!! ATTGATAGAGCTTTGAGATA+TGG - chr5.3:55849333-55849352 None:intergenic 30.0%
!! CCAGATGCAAATTATTTCTA+TGG + chr5.3:55849609-55849628 MS.gene009892:CDS 30.0%
!!! TGTATAGTATTTTGGCCAAA+AGG - chr5.3:55850111-55850130 None:intergenic 30.0%
!!! TTTCTCGTCGTTTTGATTTA+GGG - chr5.3:55849058-55849077 None:intergenic 30.0%
AAAAGACTGTTCTGCGAATA+AGG - chr5.3:55849783-55849802 None:intergenic 35.0%
AATACAATGTGCAATCGTCT+TGG + chr5.3:55850042-55850061 MS.gene009892:CDS 35.0%
ACAAAAAGTGGTGATATCGT+TGG + chr5.3:55850128-55850147 MS.gene009892:CDS 35.0%
AGGTATTCGTTTGTGAAATC+CGG - chr5.3:55849568-55849587 None:intergenic 35.0%
ATATAATCAATGGTCCTAGC+AGG + chr5.3:55849931-55849950 MS.gene009892:CDS 35.0%
ATTTCACTGGTAACCTTAGA+AGG - chr5.3:55849188-55849207 None:intergenic 35.0%
CTGTCCTTTGTCATTATACT+TGG - chr5.3:55850177-55850196 None:intergenic 35.0%
TACATATGCATTGTCACAGT+AGG - chr5.3:55850216-55850235 None:intergenic 35.0%
TAGTAGAGTCGATCTCAAAT+GGG + chr5.3:55849808-55849827 MS.gene009892:CDS 35.0%
TAGTTCTTCTTCATCTGACA+TGG + chr5.3:55849434-55849453 MS.gene009892:CDS 35.0%
TATAATCAATGGTCCTAGCA+GGG + chr5.3:55849932-55849951 MS.gene009892:CDS 35.0%
TCAAATGCGTTTGTAAGTCA+TGG + chr5.3:55849220-55849239 MS.gene009892:CDS 35.0%
TTAGTAGAGTCGATCTCAAA+TGG + chr5.3:55849807-55849826 MS.gene009892:CDS 35.0%
TTGGCCAAGTATAATGACAA+AGG + chr5.3:55850170-55850189 MS.gene009892:CDS 35.0%
! TAGGTTCCCAAATCTTTTGT+TGG - chr5.3:55849034-55849053 None:intergenic 35.0%
! TGATAGTGCTTCATATCCAA+TGG + chr5.3:55849377-55849396 MS.gene009892:CDS 35.0%
!! GATTTTAAAGGTTCATGCAG+AGG + chr5.3:55849492-55849511 MS.gene009892:CDS 35.0%
!!! GTTTCTCGTCGTTTTGATTT+AGG - chr5.3:55849059-55849078 None:intergenic 35.0%
AATTCTATTCGTGTGTGTCG+CGG - chr5.3:55849298-55849317 None:intergenic 40.0%
ACCACCACCAACAAAAGATT+TGG + chr5.3:55849024-55849043 MS.gene009892:CDS 40.0%
AGATGGTATGCTATCTCACT+TGG + chr5.3:55849701-55849720 MS.gene009892:CDS 40.0%
AGTAGAGTCGATCTCAAATG+GGG + chr5.3:55849809-55849828 MS.gene009892:CDS 40.0%
CAATGCATATGTATCCCTAG+TGG + chr5.3:55850223-55850242 MS.gene009892:CDS 40.0%
CCACCACCAACAAAAGATTT+GGG + chr5.3:55849025-55849044 MS.gene009892:CDS 40.0%
CGAGTCAACAGATGATTACT+TGG + chr5.3:55849644-55849663 MS.gene009892:CDS 40.0%
CGTATATGGAATCCATCTAC+CGG + chr5.3:55849546-55849565 MS.gene009892:CDS 40.0%
GAATCTCTGCTTTCAATTCC+TGG + chr5.3:55850257-55850276 MS.gene009892:CDS 40.0%
GATGGTATGCTATCTCACTT+GGG + chr5.3:55849702-55849721 MS.gene009892:CDS 40.0%
GTTATTCAAGCCTCCGTATA+TGG + chr5.3:55849532-55849551 MS.gene009892:CDS 40.0%
TAGCAGGGCGTATGATTTAT+GGG + chr5.3:55849947-55849966 MS.gene009892:CDS 40.0%
TCTCATTGAGAGCTAATGTG+TGG + chr5.3:55849730-55849749 MS.gene009892:CDS 40.0%
TGTTCTGCGAATAAGGCAAA+AGG - chr5.3:55849776-55849795 None:intergenic 40.0%
! ACTCTTGTCCTGTCTTTTGA+TGG + chr5.3:55850071-55850090 MS.gene009892:CDS 40.0%
! CGGTAGATGGATTCCATATA+CGG - chr5.3:55849548-55849567 None:intergenic 40.0%
! GTTCCCAAATCTTTTGTTGG+TGG - chr5.3:55849031-55849050 None:intergenic 40.0%
! TAGATGGATTCCATATACGG+AGG - chr5.3:55849545-55849564 None:intergenic 40.0%
!!! AATCTTTTGTTGGTGGTGGT+AGG - chr5.3:55849024-55849043 None:intergenic 40.0%
!!! CGTCGTTTTGATTTAGGGTT+AGG - chr5.3:55849053-55849072 None:intergenic 40.0%
AAATGGGGCTATTCACTGGT+TGG + chr5.3:55849824-55849843 MS.gene009892:CDS 45.0%
AAGAAACATGCGTGGTGCAT+TGG + chr5.3:55850151-55850170 MS.gene009892:CDS 45.0%
AATGTGTGGAGCGCAATTGA+GGG + chr5.3:55849744-55849763 MS.gene009892:CDS 45.0%
ATAGAGGATGTCTCGCTCTA+TGG + chr5.3:55849973-55849992 MS.gene009892:CDS 45.0%
ATCGTTGGAAGAAACATGCG+TGG + chr5.3:55850143-55850162 MS.gene009892:CDS 45.0%
CAGGATTGCCATCAAAAGAC+AGG - chr5.3:55850082-55850101 None:intergenic 45.0%
CATAAATCATACGCCCTGCT+AGG - chr5.3:55849948-55849967 None:intergenic 45.0%
CGTTTGTGAAATCCGGTAGA+TGG - chr5.3:55849561-55849580 None:intergenic 45.0%
CTAGCAGGGCGTATGATTTA+TGG + chr5.3:55849946-55849965 MS.gene009892:CDS 45.0%
GACGAGAAACAACAGTCACA+GGG + chr5.3:55849069-55849088 MS.gene009892:CDS 45.0%
GATAGCATACCATCTGAGCT+AGG - chr5.3:55849696-55849715 None:intergenic 45.0%
TAATGTGTGGAGCGCAATTG+AGG + chr5.3:55849743-55849762 MS.gene009892:CDS 45.0%
TAGAGGATGTCTCGCTCTAT+GGG + chr5.3:55849974-55849993 MS.gene009892:CDS 45.0%
TCTCAAATGGGGCTATTCAC+TGG + chr5.3:55849820-55849839 MS.gene009892:CDS 45.0%
TCTCTGCTTTCAATTCCTGG+TGG + chr5.3:55850260-55850279 MS.gene009892:CDS 45.0%
TGAGCTAGGAGTCTGTTCAT+AGG - chr5.3:55849682-55849701 None:intergenic 45.0%
!! CCCAAATCTTTTGTTGGTGG+TGG - chr5.3:55849028-55849047 None:intergenic 45.0%
ACAGTCACAGGGACTAGAGA+AGG + chr5.3:55849080-55849099 MS.gene009892:CDS 50.0%
CGACGAGAAACAACAGTCAC+AGG + chr5.3:55849068-55849087 MS.gene009892:CDS 50.0%
GAACAGACTCCTAGCTCAGA+TGG + chr5.3:55849684-55849703 MS.gene009892:CDS 50.0%
TTTGGCCAAAAGGAGTGAGC+AGG - chr5.3:55850101-55850120 None:intergenic 50.0%
! GCAATCCTGCTCACTCCTTT+TGG + chr5.3:55850093-55850112 MS.gene009892:CDS 50.0%
GGACTAGAGAAGGAAGACGC+AGG + chr5.3:55849090-55849109 MS.gene009892:CDS 55.0%
TCTATTCGTGTGTGTCGCGG+CGG - chr5.3:55849295-55849314 None:intergenic 55.0%
! TCAATTCCTGGTGGTGACCG+TGG + chr5.3:55850269-55850288 MS.gene009892:CDS 55.0%
ACTTGACCACGGTCACCACC+AGG - chr5.3:55850278-55850297 None:intergenic 60.0%
GTGTGGAGCGCAATTGAGGG+TGG + chr5.3:55849747-55849766 MS.gene009892:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 55849000 55850301 55849000 ID=MS.gene009892
chr5.3 mRNA 55849000 55850301 55849000 ID=MS.gene009892.t1;Parent=MS.gene009892
chr5.3 exon 55849000 55850301 55849000 ID=MS.gene009892.t1.exon1;Parent=MS.gene009892.t1
chr5.3 CDS 55849000 55850301 55849000 ID=cds.MS.gene009892.t1;Parent=MS.gene009892.t1
Gene Sequence

>MS.gene009892

ATGGGAAATGGGTTTTACAATCCTACCACCACCAACAAAAGATTTGGGAACCTAACCCTAAATCAAAACGACGAGAAACAACAGTCACAGGGACTAGAGAAGGAAGACGCAGGAATGCAGACAGCTGAGACATATCTTCCTATTGAGTTAATCATTTCTCTTCCTATTGAGTTAATCATTCAAATCCTTCTAAGGTTACCAGTGAAATCTCTTATTCGTTTCAAATGCGTTTGTAAGTCATGGCTTTCTCTTATCTCTCAACCTCACTTTGCAAATTCACATTTTCAACTTACCGCCGCGACACACACGAATAGAATTATGTTGATAACTCCATATCTCAAAGCTCTATCAATAGATCTTGAATCATCGCTTAACGATGATAGTGCTTCATATCCAATGGACATTAGTTTTTTGATTGACGATGATGATTACTATAGTTCTTCTTCATCTGACATGGATGAATTGTCGCCTCCCAAATCTTTTTTTAAACTTGATTTTAAAGGTTCATGCAGAGGCTTTATACTTTTGAACTGTTATTCAAGCCTCCGTATATGGAATCCATCTACCGGATTTCACAAACGAATACCTTTTACTACAATTGATTCCAATCCAGATGCAAATTATTTCTATGGTTTTGGGTATGACGAGTCAACAGATGATTACTTGGTGCTTTCAATGTCCTATGAACAGACTCCTAGCTCAGATGGTATGCTATCTCACTTGGGAATTTTCTCATTGAGAGCTAATGTGTGGAGCGCAATTGAGGGTGGTAACCTTTTGCCTTATTCGCAGAACAGTCTTTTAAACTTAGTAGAGTCGATCTCAAATGGGGCTATTCACTGGTTGGCTTTTCGTAATGATATATCAATGCCTGTTATTGTTGCCTTTCATTTAATTGAAAGGAAACTTCTAGAGTTGCGTTTGCCAAATGATATAATCAATGGTCCTAGCAGGGCGTATGATTTATGGGTGTATAGAGGATGTCTCGCTCTATGGGATATTTTGTCTGATAGAGTTACATTTGAAATATGGGTTATGGAAAAATACAATGTGCAATCGTCTTGGACTAAGACTCTTGTCCTGTCTTTTGATGGCAATCCTGCTCACTCCTTTTGGCCAAAATACTATACAAAAAGTGGTGATATCGTTGGAAGAAACATGCGTGGTGCATTGGCCAAGTATAATGACAAAGGACAGCTGCAAGAACATCACTCCTACTGTGACAATGCATATGTATCCCTAGTGGTTATGTATACAGAATCTCTGCTTTCAATTCCTGGTGGTGACCGTGGTCAAGTTTAA

Protein sequence

>MS.gene009892.t1

MGNGFYNPTTTNKRFGNLTLNQNDEKQQSQGLEKEDAGMQTAETYLPIELIISLPIELIIQILLRLPVKSLIRFKCVCKSWLSLISQPHFANSHFQLTAATHTNRIMLITPYLKALSIDLESSLNDDSASYPMDISFLIDDDDYYSSSSSDMDELSPPKSFFKLDFKGSCRGFILLNCYSSLRIWNPSTGFHKRIPFTTIDSNPDANYFYGFGYDESTDDYLVLSMSYEQTPSSDGMLSHLGIFSLRANVWSAIEGGNLLPYSQNSLLNLVESISNGAIHWLAFRNDISMPVIVAFHLIERKLLELRLPNDIINGPSRAYDLWVYRGCLALWDILSDRVTFEIWVMEKYNVQSSWTKTLVLSFDGNPAHSFWPKYYTKSGDIVGRNMRGALAKYNDKGQLQEHHSYCDNAYVSLVVMYTESLLSIPGGDRGQV