AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041393

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041393.t1 MTR_4g116320 62.602 246 66 3 28 249 12 255 9.97e-95 279
MS.gene041393.t1 MTR_4g116330 64.486 214 74 1 39 252 169 380 4.51e-88 266
MS.gene041393.t1 MTR_3g103020 63.134 217 75 2 39 252 164 378 2.51e-85 259
MS.gene041393.t1 MTR_4g117720 61.435 223 73 5 38 252 161 378 1.35e-84 257
MS.gene041393.t1 MTR_6g060650 60.748 214 80 2 38 251 163 372 8.94e-83 252
MS.gene041393.t1 MTR_4g109280 63.077 195 68 3 59 252 168 359 3.91e-79 243
MS.gene041393.t1 MTR_4g109270 58.986 217 79 4 38 252 156 364 1.12e-77 239
MS.gene041393.t1 MTR_8g040935 57.692 208 85 2 48 252 1 208 8.88e-77 231
MS.gene041393.t1 MTR_4g117850 56.944 216 80 5 39 245 162 373 3.68e-72 225
MS.gene041393.t1 MTR_3g034180 56.951 223 80 6 40 251 271 488 8.95e-71 225
MS.gene041393.t1 MTR_3g034160 57.143 224 80 5 39 251 156 374 1.68e-70 221
MS.gene041393.t1 MTR_3g034130 57.143 210 75 5 40 238 157 362 9.05e-70 219
MS.gene041393.t1 MTR_8g433030 56.808 213 84 5 39 248 131 338 1.25e-69 218
MS.gene041393.t1 MTR_8g032390 57.277 213 83 5 39 248 164 371 5.27e-69 217
MS.gene041393.t1 MTR_4g023130 56.744 215 72 6 40 249 112 310 7.69e-66 207
MS.gene041393.t1 MTR_4g122850 53.670 218 92 7 40 252 151 364 2.99e-65 207
MS.gene041393.t1 MTR_4g023080 55.349 215 75 6 40 249 153 351 7.51e-65 206
MS.gene041393.t1 MTR_4g118380 55.385 195 76 2 38 223 165 357 1.20e-63 202
MS.gene041393.t1 MTR_4g117770 53.670 218 91 5 39 252 156 367 1.39e-63 203
MS.gene041393.t1 MTR_4g117810 53.670 218 91 5 39 252 156 367 1.39e-63 203
MS.gene041393.t1 MTR_4g094365 53.589 209 89 4 40 246 156 358 2.88e-63 202
MS.gene041393.t1 MTR_4g117780 52.294 218 94 5 39 252 156 367 3.40e-63 202
MS.gene041393.t1 MTR_4g023090 52.018 223 86 6 39 247 164 379 8.13e-62 199
MS.gene041393.t1 MTR_4g021785 51.402 214 92 4 40 252 153 355 1.16e-60 195
MS.gene041393.t1 MTR_4g116330 52.804 214 60 2 39 252 169 341 1.67e-60 194
MS.gene041393.t1 MTR_5g070080 53.333 210 94 3 41 249 176 382 6.12e-59 191
MS.gene041393.t1 MTR_6g463430 52.308 195 84 5 60 252 15 202 3.43e-58 184
MS.gene041393.t1 MTR_4g023070 48.673 226 95 6 40 249 147 367 1.26e-57 187
MS.gene041393.t1 MTR_8g433040 50.463 216 89 4 40 252 164 364 1.47e-57 187
MS.gene041393.t1 MTR_8g032380 50.463 216 89 4 40 252 164 364 1.47e-57 187
MS.gene041393.t1 MTR_5g070130 49.776 223 100 6 40 252 157 377 2.51e-57 187
MS.gene041393.t1 MTR_4g118400 55.319 188 68 4 59 246 123 294 2.52e-57 184
MS.gene041393.t1 MTR_4g023380 50.926 216 77 5 61 252 169 379 4.22e-57 186
MS.gene041393.t1 MTR_4g117530 39.711 277 82 5 20 252 18 253 1.10e-54 176
MS.gene041393.t1 MTR_4g023120 47.321 224 97 6 40 247 147 365 2.62e-54 179
MS.gene041393.t1 MTR_4g023190 48.611 216 91 7 40 249 155 356 5.14e-53 175
MS.gene041393.t1 MTR_5g097210 49.765 213 95 7 41 247 152 358 6.62e-53 176
MS.gene041393.t1 MTR_4g117870 46.948 213 75 5 40 252 93 267 2.08e-52 171
MS.gene041393.t1 MTR_1g055175 47.739 199 97 5 58 252 6 201 1.70e-51 167
MS.gene041393.t1 MTR_1g055250 43.254 252 113 6 20 245 16 263 2.74e-51 170
MS.gene041393.t1 MTR_4g023150 46.729 214 99 6 40 249 155 357 7.00e-51 170
MS.gene041393.t1 MTR_1g055135 47.085 223 104 7 40 252 157 375 1.04e-50 170
MS.gene041393.t1 MTR_4g023200 46.262 214 100 6 40 249 155 357 1.99e-50 169
MS.gene041393.t1 MTR_4g118370 47.907 215 83 7 38 246 63 254 1.03e-49 164
MS.gene041393.t1 MTR_1g055195 46.847 222 94 8 41 252 271 478 7.36e-49 167
MS.gene041393.t1 MTR_4g023440 44.601 213 74 4 40 252 164 332 1.33e-47 160
MS.gene041393.t1 MTR_4g117750 48.198 222 96 8 38 246 138 353 3.62e-47 163
MS.gene041393.t1 MTR_4g117750 61.111 108 40 1 140 247 373 478 1.30e-35 132
MS.gene041393.t1 MTR_4g116340 93.506 77 5 0 39 115 171 247 5.09e-47 157
MS.gene041393.t1 MTR_4g116340 87.500 40 5 0 1 40 12 51 5.07e-15 72.8
MS.gene041393.t1 MTR_1g055165 50.909 165 78 3 88 252 157 318 1.02e-45 155
MS.gene041393.t1 MTR_5g070088 46.154 221 104 6 41 252 172 386 3.37e-45 155
MS.gene041393.t1 MTR_4g121580 44.019 209 83 6 41 244 166 345 4.44e-41 145
MS.gene041393.t1 MTR_7g079400 41.294 201 105 6 61 252 141 337 6.54e-40 140
MS.gene041393.t1 MTR_8g013010 61.468 109 38 1 41 149 205 309 1.18e-37 134
MS.gene041393.t1 MTR_4g118360 54.615 130 53 3 125 252 1 126 1.99e-37 128
MS.gene041393.t1 MTR_4g122860 35.495 293 110 8 11 252 56 320 1.14e-36 132
MS.gene041393.t1 MTR_8g102520 40.000 205 112 6 54 252 123 322 2.51e-36 131
MS.gene041393.t1 MTR_4g114700 42.254 213 63 8 39 243 58 218 7.57e-35 125
MS.gene041393.t1 MTR_8g098830 39.524 210 103 8 16 219 3 194 1.49e-34 124
MS.gene041393.t1 MTR_7g079370 41.629 221 113 9 38 248 138 352 1.01e-33 125
MS.gene041393.t1 MTR_5g023000 60.396 101 38 1 152 252 1 99 1.20e-33 117
MS.gene041393.t1 MTR_4g117430 54.867 113 42 3 41 152 51 155 3.77e-30 110
MS.gene041393.t1 MTR_2g048580 38.119 202 98 12 61 252 158 342 3.99e-26 104
MS.gene041393.t1 MTR_7g079450 40.411 146 74 5 110 252 2 137 5.52e-22 89.0
MS.gene041393.t1 MTR_7g117720 59.302 86 33 2 163 246 186 271 7.84e-22 91.7
MS.gene041393.t1 MTR_7g079420 36.364 176 86 7 89 252 983 1144 1.05e-21 94.4
MS.gene041393.t1 MTR_4g023430 40.650 123 71 2 132 252 100 222 1.37e-20 87.4
MS.gene041393.t1 MTR_4g122840 40.580 138 44 4 116 252 164 264 2.28e-18 82.0
MS.gene041393.t1 MTR_6g034720 48.315 89 44 1 41 127 82 170 6.60e-18 80.1
MS.gene041393.t1 MTR_8g013005 57.377 61 24 1 192 252 1 59 1.52e-13 63.9
MS.gene041393.t1 MTR_1g055145 49.333 75 36 2 92 166 130 202 8.41e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 50 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCAACAAATGGAGAAAA+TGG 0.209793 8.2:+12739329 MS.gene041393:CDS
GACAAATCCACCGTCTTATT+TGG 0.213412 8.2:+12738361 MS.gene041393:CDS
ACTACACACACTCGTAAAAT+TGG 0.240562 8.2:+12738317 MS.gene041393:CDS
AATTGTGAGTTGTGGGTATT+TGG 0.245408 8.2:+12739137 MS.gene041393:CDS
TTGGAGAATTTCTCAGTCTA+TGG 0.267319 8.2:+12739156 MS.gene041393:CDS
CTTTCTCTCCCTGGTGGAAA+TGG 0.288419 8.2:+12739455 MS.gene041393:CDS
TCATCATAGTCATTCATATA+AGG 0.290592 8.2:-12738966 None:intergenic
TATTCTTGCATTTGATTTAA+CGG 0.292550 8.2:+12739061 MS.gene041393:CDS
ACTCTTGTTCTTCCTATTGA+TGG 0.316007 8.2:+12739254 MS.gene041393:CDS
ATAATCGTAGTGTTGAAATA+TGG 0.324342 8.2:+12739192 MS.gene041393:CDS
ACACTCGTAAAATTGGAAAA+AGG 0.339804 8.2:+12738324 MS.gene041393:CDS
TCAAATTCTGCTGAGGTTAC+CGG 0.344652 8.2:+12738400 MS.gene041393:CDS
TGGTACGGTCAACTTGAAAC+TGG 0.362368 8.2:+12739401 MS.gene041393:CDS
AGTACCCTCTAGTTCTTTCC+AGG 0.384857 8.2:-12738937 None:intergenic
GTTAAGAGATGATAACTTAG+TGG 0.389629 8.2:+12738842 MS.gene041393:intron
AGTTCATTGTTATTCGCGTT+TGG 0.394001 8.2:+12738890 MS.gene041393:CDS
GACTATGATGATCCTAGAAC+AGG 0.397861 8.2:+12738978 MS.gene041393:CDS
TGTGATATTGTTGCAACAAA+TGG 0.413856 8.2:+12739320 MS.gene041393:CDS
GAATCTATGCTTTCTCTCCC+TGG 0.426231 8.2:+12739446 MS.gene041393:CDS
CGAGAGGGAGTGCCATCAAT+AGG 0.429315 8.2:-12739266 None:intergenic
CATCATAGTCATTCATATAA+GGG 0.437014 8.2:-12738965 None:intergenic
TTTCTCTCCCTGGTGGAAAT+GGG 0.457865 8.2:+12739456 MS.gene041393:CDS
TAACGGGGCTATTCATTGGT+TGG 0.464357 8.2:+12739010 MS.gene041393:CDS
TTCTAGAGCATGAATCATAC+TGG 0.464757 8.2:+12739381 MS.gene041393:CDS
ATTTCTCAGTCTATGGGCTA+TGG 0.476940 8.2:+12739163 MS.gene041393:CDS
TGGAGAATTTCTCAGTCTAT+GGG 0.490268 8.2:+12739157 MS.gene041393:CDS
AATTGAAAATTGTGAGTTGT+GGG 0.501266 8.2:+12739130 MS.gene041393:CDS
ATGAACTAAGGTTGGATCAC+AGG 0.505275 8.2:-12738874 None:intergenic
TCTCATTAAGAGATAATACC+TGG 0.506333 8.2:+12738919 MS.gene041393:CDS
TAGGCTTGCCCATTTCCACC+AGG 0.508269 8.2:-12739464 None:intergenic
AATACAAAGTGAATTCGTCT+TGG 0.512787 8.2:+12739225 MS.gene041393:CDS
TAATCGTAGTGTTGAAATAT+GGG 0.526395 8.2:+12739193 MS.gene041393:CDS
CTATTGATGGCACTCCCTCT+CGG 0.533309 8.2:+12739267 MS.gene041393:CDS
TGGCCAGAACCATCTAGAAA+AGG 0.536983 8.2:-12739104 None:intergenic
GAATAACAATGAACTAAGGT+TGG 0.549338 8.2:-12738882 None:intergenic
TTGCATTTGATTTAACGGAA+AGG 0.556026 8.2:+12739066 MS.gene041393:CDS
AAATTGAAAATTGTGAGTTG+TGG 0.556611 8.2:+12739129 MS.gene041393:CDS
ACGCGAATAACAATGAACTA+AGG 0.568240 8.2:-12738886 None:intergenic
AAGCATAGATTCTGTATACA+TGG 0.573608 8.2:-12739435 None:intergenic
TGATAGTTCAAATTCTGCTG+AGG 0.593840 8.2:+12738393 MS.gene041393:CDS
AGGCTTGCCCATTTCCACCA+GGG 0.597050 8.2:-12739463 None:intergenic
ATTCTGTATACATGGTCACT+AGG 0.605990 8.2:-12739427 None:intergenic
GAGCATGAATCATACTGGTA+CGG 0.607451 8.2:+12739386 MS.gene041393:CDS
TAATACCTGGAAAGAACTAG+AGG 0.621681 8.2:+12738932 MS.gene041393:CDS
AATTCAAGAGCCAAATAAGA+CGG 0.621727 8.2:-12738371 None:intergenic
TCAAGAGCCAAATAAGACGG+TGG 0.671598 8.2:-12738368 None:intergenic
TCTATGCTTTCTCTCCCTGG+TGG 0.673024 8.2:+12739449 MS.gene041393:CDS
AATACCTGGAAAGAACTAGA+GGG 0.680024 8.2:+12738933 MS.gene041393:CDS
TTGTTGAAGTATAATGACGA+AGG 0.694892 8.2:+12739353 MS.gene041393:CDS
ACTATGATGATCCTAGAACA+GGG 0.697348 8.2:+12738979 MS.gene041393:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGGGATTTATAAAACTA+GGG - chr8.2:12738632-12738651 None:intergenic 20.0%
!! GTCTTTCAATAATAGTATTA+TGG - chr8.2:12738605-12738624 None:intergenic 20.0%
!!! TATGATTGCTTTTATCTATA+TGG + chr8.2:12738804-12738823 MS.gene041393:intron 20.0%
!!! TATTCTTGCATTTGATTTAA+CGG + chr8.2:12739061-12739080 MS.gene041393:CDS 20.0%
! AAATTGAAAATTGTGAGTTG+TGG + chr8.2:12739129-12739148 MS.gene041393:CDS 25.0%
! AATTGAAAATTGTGAGTTGT+GGG + chr8.2:12739130-12739149 MS.gene041393:CDS 25.0%
! CATCATAGTCATTCATATAA+GGG - chr8.2:12738968-12738987 None:intergenic 25.0%
! GATAAGGGATTTATAAAACT+AGG - chr8.2:12738633-12738652 None:intergenic 25.0%
! TCATCATAGTCATTCATATA+AGG - chr8.2:12738969-12738988 None:intergenic 25.0%
! TTTAATTCAATAGGAGACAA+AGG - chr8.2:12738765-12738784 None:intergenic 25.0%
! TTTATAAATCCCTTATCTGA+TGG + chr8.2:12738636-12738655 MS.gene041393:intron 25.0%
!! AACTTTTTGTAGAGCATATT+GGG - chr8.2:12739301-12739320 None:intergenic 25.0%
!! AAGGTATTTGTTTATGAACT+CGG - chr8.2:12738746-12738765 None:intergenic 25.0%
!! ACTCACAATTTTCAATTTCA+TGG - chr8.2:12739127-12739146 None:intergenic 25.0%
!! ATAATCGTAGTGTTGAAATA+TGG + chr8.2:12739192-12739211 MS.gene041393:CDS 25.0%
!! GCTTTTATCTATATGGTTTT+GGG + chr8.2:12738811-12738830 MS.gene041393:intron 25.0%
!! TAATCGTAGTGTTGAAATAT+GGG + chr8.2:12739193-12739212 MS.gene041393:CDS 25.0%
!! TGCTTTTATCTATATGGTTT+TGG + chr8.2:12738810-12738829 MS.gene041393:intron 25.0%
AAGCATAGATTCTGTATACA+TGG - chr8.2:12739438-12739457 None:intergenic 30.0%
AATACAAAGTGAATTCGTCT+TGG + chr8.2:12739225-12739244 MS.gene041393:CDS 30.0%
AATTCAAGAGCCAAATAAGA+CGG - chr8.2:12738374-12738393 None:intergenic 30.0%
ACACTCGTAAAATTGGAAAA+AGG + chr8.2:12738324-12738343 MS.gene041393:CDS 30.0%
AGGTATTTGTTTATGAACTC+GGG - chr8.2:12738745-12738764 None:intergenic 30.0%
ATAATTCAAGCTTCTACCTA+TGG + chr8.2:12738709-12738728 MS.gene041393:intron 30.0%
CAAAAATATAAAGCCTCTAC+AGG - chr8.2:12738682-12738701 None:intergenic 30.0%
GAATAACAATGAACTAAGGT+TGG - chr8.2:12738885-12738904 None:intergenic 30.0%
GCATCTGCATTTAATTCAAT+AGG - chr8.2:12738774-12738793 None:intergenic 30.0%
GGATTTATAAAACTAGGGTT+GGG - chr8.2:12738627-12738646 None:intergenic 30.0%
GTTAAGAGATGATAACTTAG+TGG + chr8.2:12738842-12738861 MS.gene041393:intron 30.0%
TCAATAAGACCATCAGATAA+GGG - chr8.2:12738648-12738667 None:intergenic 30.0%
TCTCATTAAGAGATAATACC+TGG + chr8.2:12738919-12738938 MS.gene041393:CDS 30.0%
TGTGATATTGTTGCAACAAA+TGG + chr8.2:12739320-12739339 MS.gene041393:CDS 30.0%
TTCAATAAGACCATCAGATA+AGG - chr8.2:12738649-12738668 None:intergenic 30.0%
TTGTTGAAGTATAATGACGA+AGG + chr8.2:12739353-12739372 MS.gene041393:CDS 30.0%
! AATTTTACTAGTGTGTGTTG+AGG - chr8.2:12738522-12738541 None:intergenic 30.0%
! ACTTTTTGTAGAGCATATTG+GGG - chr8.2:12739300-12739319 None:intergenic 30.0%
! CAACTTTTTGTAGAGCATAT+TGG - chr8.2:12739302-12739321 None:intergenic 30.0%
! TTGCATTTGATTTAACGGAA+AGG + chr8.2:12739066-12739085 MS.gene041393:CDS 30.0%
AAATGCGAATTTGCAAAGTG+AGG - chr8.2:12738488-12738507 None:intergenic 35.0%
AATACCTGGAAAGAACTAGA+GGG + chr8.2:12738933-12738952 MS.gene041393:CDS 35.0%
AATTGTGAGTTGTGGGTATT+TGG + chr8.2:12739137-12739156 MS.gene041393:CDS 35.0%
ACGCGAATAACAATGAACTA+AGG - chr8.2:12738889-12738908 None:intergenic 35.0%
ACTACACACACTCGTAAAAT+TGG + chr8.2:12738317-12738336 MS.gene041393:CDS 35.0%
ACTATGATGATCCTAGAACA+GGG + chr8.2:12738979-12738998 MS.gene041393:CDS 35.0%
ACTCTTGTTCTTCCTATTGA+TGG + chr8.2:12739254-12739273 MS.gene041393:CDS 35.0%
ATTCTGTATACATGGTCACT+AGG - chr8.2:12739430-12739449 None:intergenic 35.0%
GAAATTGTAAGTTCCTGTAG+AGG + chr8.2:12738666-12738685 MS.gene041393:intron 35.0%
GGGATTTATAAAACTAGGGT+TGG - chr8.2:12738628-12738647 None:intergenic 35.0%
GTTGCAACAAATGGAGAAAA+TGG + chr8.2:12739329-12739348 MS.gene041393:CDS 35.0%
TAATACCTGGAAAGAACTAG+AGG + chr8.2:12738932-12738951 MS.gene041393:CDS 35.0%
TATTTGTTTATGAACTCGGG+TGG - chr8.2:12738742-12738761 None:intergenic 35.0%
TCAATTGCGTTTGTAAGTCT+TGG + chr8.2:12738441-12738460 MS.gene041393:intron 35.0%
TGATAGTTCAAATTCTGCTG+AGG + chr8.2:12738393-12738412 MS.gene041393:CDS 35.0%
TGGAGAATTTCTCAGTCTAT+GGG + chr8.2:12739157-12739176 MS.gene041393:CDS 35.0%
TTAAAAAGTGACCCTGTTCT+AGG - chr8.2:12738993-12739012 None:intergenic 35.0%
TTGGAGAATTTCTCAGTCTA+TGG + chr8.2:12739156-12739175 MS.gene041393:CDS 35.0%
! AGTTCATTGTTATTCGCGTT+TGG + chr8.2:12738890-12738909 MS.gene041393:CDS 35.0%
! TTAGAGATGCCTTTTCTAGA+TGG + chr8.2:12739095-12739114 MS.gene041393:CDS 35.0%
! TTTTTAACGGGGCTATTCAT+TGG + chr8.2:12739006-12739025 MS.gene041393:CDS 35.0%
!! TTCTAGAGCATGAATCATAC+TGG + chr8.2:12739381-12739400 MS.gene041393:CDS 35.0%
!!! AGAACAGGGTCACTTTTTAA+CGG + chr8.2:12738993-12739012 MS.gene041393:CDS 35.0%
AAACGTAGAAGAGACTTCAC+CGG - chr8.2:12738422-12738441 None:intergenic 40.0%
ATGAACTAAGGTTGGATCAC+AGG - chr8.2:12738877-12738896 None:intergenic 40.0%
ATTGGGGAAAAATACCGAGA+GGG - chr8.2:12739284-12739303 None:intergenic 40.0%
GACTATGATGATCCTAGAAC+AGG + chr8.2:12738978-12738997 MS.gene041393:CDS 40.0%
GAGCATGAATCATACTGGTA+CGG + chr8.2:12739386-12739405 MS.gene041393:CDS 40.0%
TATTGGGGAAAAATACCGAG+AGG - chr8.2:12739285-12739304 None:intergenic 40.0%
TCAAATTCTGCTGAGGTTAC+CGG + chr8.2:12738400-12738419 MS.gene041393:CDS 40.0%
TTTACTAGTGTGTGTTGAGG+CGG - chr8.2:12738519-12738538 None:intergenic 40.0%
! ATGCCTTTTCTAGATGGTTC+TGG + chr8.2:12739101-12739120 MS.gene041393:CDS 40.0%
! ATTTCTCAGTCTATGGGCTA+TGG + chr8.2:12739163-12739182 MS.gene041393:CDS 40.0%
! GACAAATCCACCGTCTTATT+TGG + chr8.2:12738361-12738380 MS.gene041393:CDS 40.0%
!!! AACAGGGTCACTTTTTAACG+GGG + chr8.2:12738995-12739014 MS.gene041393:CDS 40.0%
!!! GAACAGGGTCACTTTTTAAC+GGG + chr8.2:12738994-12739013 MS.gene041393:CDS 40.0%
GAATCTATGCTTTCTCTCCC+TGG + chr8.2:12739446-12739465 MS.gene041393:CDS 45.0%
TAACGGGGCTATTCATTGGT+TGG + chr8.2:12739010-12739029 MS.gene041393:CDS 45.0%
TCAAGAGCCAAATAAGACGG+TGG - chr8.2:12738371-12738390 None:intergenic 45.0%
TGGCCAGAACCATCTAGAAA+AGG - chr8.2:12739107-12739126 None:intergenic 45.0%
TGGTACGGTCAACTTGAAAC+TGG + chr8.2:12739401-12739420 MS.gene041393:CDS 45.0%
TGTTTATGAACTCGGGTGGA+TGG - chr8.2:12738738-12738757 None:intergenic 45.0%
TTTCTCTCCCTGGTGGAAAT+GGG + chr8.2:12739456-12739475 MS.gene041393:CDS 45.0%
!! AGTACCCTCTAGTTCTTTCC+AGG - chr8.2:12738940-12738959 None:intergenic 45.0%
CTTTCTCTCCCTGGTGGAAA+TGG + chr8.2:12739455-12739474 MS.gene041393:CDS 50.0%
TCTATGCTTTCTCTCCCTGG+TGG + chr8.2:12739449-12739468 MS.gene041393:CDS 50.0%
! CTATTGATGGCACTCCCTCT+CGG + chr8.2:12739267-12739286 MS.gene041393:CDS 50.0%
AGGCTTGCCCATTTCCACCA+GGG - chr8.2:12739466-12739485 None:intergenic 55.0%
TAGGCTTGCCCATTTCCACC+AGG - chr8.2:12739467-12739486 None:intergenic 55.0%
! CTCGGGTGGATGGATTCCAT+AGG - chr8.2:12738728-12738747 None:intergenic 55.0%
!! CGAGAGGGAGTGCCATCAAT+AGG - chr8.2:12739269-12739288 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 12738308 12739487 12738308 ID=MS.gene041393
chr8.2 mRNA 12738308 12739487 12738308 ID=MS.gene041393.t1;Parent=MS.gene041393
chr8.2 exon 12738308 12738421 12738308 ID=MS.gene041393.t1.exon1;Parent=MS.gene041393.t1
chr8.2 CDS 12738308 12738421 12738308 ID=cds.MS.gene041393.t1;Parent=MS.gene041393.t1
chr8.2 exon 12738843 12739487 12738843 ID=MS.gene041393.t1.exon2;Parent=MS.gene041393.t1
chr8.2 CDS 12738843 12739487 12738843 ID=cds.MS.gene041393.t1;Parent=MS.gene041393.t1
Gene Sequence

>MS.gene041393

ATGGAGGAGACTACACACACTCGTAAAATTGGAAAAAGGCGCATGAAGAAGAAGACAAATCCACCGTCTTATTTGGCTCTTGAATTGATAGTTCAAATTCTGCTGAGGTTACCGGTGAAGTCTCTTCTACGTTTCAATTGCGTTTGTAAGTCTTGGTTTTCTCTTATCTCTCATGATCCTCACTTTGCAAATTCGCATTTTCAAATAACCGCCTCAACACACACTAGTAAAATTGTGTTCATAACAAATTCACTCAGTGACACACTATCTTTCGATTTTGAAAGTATCTATTCACCATAATACTATTATTGAAAGACCCAACCCTAGTTTTATAAATCCCTTATCTGATGGTCTTATTGAAATTGTAAGTTCCTGTAGAGGCTTTATATTTTTGCATGATCATAATTCAAGCTTCTACCTATGGAATCCATCCACCCGAGTTCATAAACAAATACCTTTGTCTCCTATTGAATTAAATGCAGATGCTGTAGATGCATATGATTGCTTTTATCTATATGGTTTTGGGTATGATCAGTTAAGAGATGATAACTTAGTGGTTTCAGTGTCCTGTGATCCAACCTTAGTTCATTGTTATTCGCGTTTGGAATTTTTCTCATTAAGAGATAATACCTGGAAAGAACTAGAGGGTACTCGCTTCCCTTATATGAATGACTATGATGATCCTAGAACAGGGTCACTTTTTAACGGGGCTATTCATTGGTTGGCTTATCATCATGATTTAGTGAATAATGCTATTCTTGCATTTGATTTAACGGAAAGGAAACTTTTAGAGATGCCTTTTCTAGATGGTTCTGGCCATGAAATTGAAAATTGTGAGTTGTGGGTATTTGGAGAATTTCTCAGTCTATGGGCTATGGATTATGATAATCGTAGTGTTGAAATATGGGTGATGAAAGAATACAAAGTGAATTCGTCTTGGACTAAAACTCTTGTTCTTCCTATTGATGGCACTCCCTCTCGGTATTTTTCCCCAATATGCTCTACAAAAAGTTGTGATATTGTTGCAACAAATGGAGAAAATGGATTGTTGAAGTATAATGACGAAGGACAGCTTCTAGAGCATGAATCATACTGGTACGGTCAACTTGAAACTGGATTCCTAGTGACCATGTATACAGAATCTATGCTTTCTCTCCCTGGTGGAAATGGGCAAGCCTAA
Protein sequence

>MS.gene041393.t1

MEETTHTRKIGKRRMKKKTNPPSYLALELIVQILLRLPLRDDNLVVSVSCDPTLVHCYSRLEFFSLRDNTWKELEGTRFPYMNDYDDPRTGSLFNGAIHWLAYHHDLVNNAILAFDLTERKLLEMPFLDGSGHEIENCELWVFGEFLSLWAMDYDNRSVEIWVMKEYKVNSSWTKTLVLPIDGTPSRYFSPICSTKSCDIVATNGENGLLKYNDEGQLLEHESYWYGQLETGFLVTMYTESMLSLPGGNGQA