AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009893


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009893.t1 MTR_5g070080 87.855 387 42 2 1 383 1 386 0.0 660
MS.gene009893.t1 MTR_5g070088 65.375 387 124 6 5 383 2 386 1.14e-163 464
MS.gene009893.t1 MTR_5g070130 62.500 392 114 6 5 383 6 377 6.14e-160 454
MS.gene009893.t1 MTR_3g103020 56.545 382 137 7 9 383 19 378 2.42e-133 387
MS.gene009893.t1 MTR_3g034180 49.624 399 156 10 3 382 116 488 4.10e-111 334
MS.gene009893.t1 MTR_3g034160 50.508 394 151 11 3 377 2 370 1.71e-106 318
MS.gene009893.t1 MTR_4g109270 50.769 390 143 13 10 383 8 364 1.20e-105 315
MS.gene009893.t1 MTR_1g055135 49.746 394 157 11 5 383 8 375 1.99e-105 315
MS.gene009893.t1 MTR_4g109280 50.392 383 152 10 9 383 7 359 3.61e-105 314
MS.gene009893.t1 MTR_3g034130 49.351 385 152 9 3 368 2 362 5.49e-105 314
MS.gene009893.t1 MTR_6g060650 52.062 388 159 12 5 382 2 372 2.48e-104 312
MS.gene009893.t1 MTR_4g023090 47.236 398 161 12 8 382 14 385 6.34e-102 307
MS.gene009893.t1 MTR_4g023080 48.404 376 157 9 9 379 8 351 2.55e-101 304
MS.gene009893.t1 MTR_5g097210 47.927 386 158 14 5 377 3 358 3.53e-99 299
MS.gene009893.t1 MTR_4g117770 49.482 386 158 11 8 383 9 367 6.87e-98 296
MS.gene009893.t1 MTR_4g117810 49.482 386 158 11 8 383 9 367 6.87e-98 296
MS.gene009893.t1 MTR_4g117780 47.927 386 164 10 8 383 9 367 2.94e-97 294
MS.gene009893.t1 MTR_4g117850 49.606 381 151 10 8 375 21 373 7.63e-97 293
MS.gene009893.t1 MTR_4g094365 45.974 385 168 12 4 376 2 358 2.02e-95 289
MS.gene009893.t1 MTR_4g021785 47.781 383 157 12 9 383 8 355 2.59e-95 289
MS.gene009893.t1 MTR_4g117720 46.923 390 131 12 9 383 50 378 8.02e-95 288
MS.gene009893.t1 MTR_4g116330 48.477 394 161 14 3 383 16 380 8.72e-95 288
MS.gene009893.t1 MTR_4g117750 49.482 386 143 11 9 376 2 353 6.84e-94 290
MS.gene009893.t1 MTR_4g117750 53.571 112 51 1 267 377 367 478 8.25e-24 103
MS.gene009893.t1 MTR_4g118380 48.919 370 157 9 4 355 2 357 7.47e-93 283
MS.gene009893.t1 MTR_4g023440 47.368 380 133 14 8 383 16 332 3.89e-90 275
MS.gene009893.t1 MTR_4g023380 46.172 418 147 16 1 383 5 379 4.10e-89 274
MS.gene009893.t1 MTR_4g122850 45.699 372 163 12 21 377 12 359 1.38e-88 272
MS.gene009893.t1 MTR_4g023070 44.949 396 157 14 10 377 3 365 1.03e-86 267
MS.gene009893.t1 MTR_8g433040 44.192 396 168 13 1 383 9 364 6.23e-86 265
MS.gene009893.t1 MTR_8g032380 44.192 396 168 13 1 383 9 364 6.23e-86 265
MS.gene009893.t1 MTR_4g023120 44.221 398 161 13 10 379 3 367 9.67e-85 262
MS.gene009893.t1 MTR_8g032390 43.814 388 161 9 1 378 31 371 3.02e-84 261
MS.gene009893.t1 MTR_4g023190 44.961 387 170 12 1 377 1 354 1.79e-82 256
MS.gene009893.t1 MTR_8g013010 49.819 277 116 5 9 282 53 309 4.02e-82 254
MS.gene009893.t1 MTR_4g023150 44.444 387 173 12 1 377 1 355 6.54e-82 254
MS.gene009893.t1 MTR_1g055165 41.795 390 148 10 1 383 1 318 1.94e-81 252
MS.gene009893.t1 MTR_4g116330 45.385 390 140 15 3 383 16 341 7.04e-80 249
MS.gene009893.t1 MTR_4g023200 44.231 364 161 11 24 377 24 355 1.60e-79 248
MS.gene009893.t1 MTR_4g023130 41.885 382 144 10 3 379 2 310 2.29e-77 241
MS.gene009893.t1 MTR_4g121580 44.588 388 147 18 3 372 2 339 2.29e-73 234
MS.gene009893.t1 MTR_1g055195 46.519 316 136 10 77 376 174 472 1.49e-71 232
MS.gene009893.t1 MTR_7g079370 40.934 364 164 15 39 378 16 352 1.64e-60 199
MS.gene009893.t1 MTR_2g048580 36.340 388 182 19 9 383 7 342 3.82e-59 195
MS.gene009893.t1 MTR_4g117870 40.446 314 125 9 69 377 6 262 8.17e-58 189
MS.gene009893.t1 MTR_4g118400 43.617 282 125 8 103 376 39 294 1.33e-57 190
MS.gene009893.t1 MTR_8g102520 37.275 389 157 16 9 383 7 322 2.75e-57 190
MS.gene009893.t1 MTR_4g118370 45.565 248 100 8 140 377 33 255 8.75e-56 184
MS.gene009893.t1 MTR_7g079400 40.498 321 157 11 77 378 28 333 3.48e-53 179
MS.gene009893.t1 MTR_4g116320 51.643 213 91 6 173 376 43 252 7.49e-53 176
MS.gene009893.t1 MTR_4g116340 42.629 251 101 7 8 252 34 247 4.17e-52 174
MS.gene009893.t1 MTR_8g433030 49.083 218 99 6 169 378 125 338 7.38e-52 176
MS.gene009893.t1 MTR_8g433030 56.977 86 36 1 1 86 31 115 3.68e-19 87.8
MS.gene009893.t1 MTR_6g463430 47.115 208 96 5 184 383 1 202 2.45e-46 157
MS.gene009893.t1 MTR_4g117530 44.954 218 82 6 167 383 73 253 1.65e-44 154
MS.gene009893.t1 MTR_1g055175 47.208 197 92 7 196 383 8 201 2.36e-44 152
MS.gene009893.t1 MTR_1g055250 44.762 210 97 8 162 356 37 242 7.01e-44 155
MS.gene009893.t1 MTR_4g117430 49.689 161 66 5 128 283 3 153 5.51e-39 137
MS.gene009893.t1 MTR_8g040935 44.976 209 105 5 184 383 1 208 1.36e-38 137
MS.gene009893.t1 MTR_7g079420 37.584 298 126 13 107 383 886 1144 4.02e-37 143
MS.gene009893.t1 MTR_7g117720 41.096 219 80 8 1 211 1 178 2.58e-35 130
MS.gene009893.t1 MTR_7g117720 52.336 107 43 3 279 377 166 272 4.03e-21 92.4
MS.gene009893.t1 MTR_4g114700 40.154 259 100 11 124 373 6 218 1.12e-33 125
MS.gene009893.t1 MTR_4g109290 42.308 182 47 5 8 184 7 135 1.08e-31 119
MS.gene009893.t1 MTR_1g097330 29.653 317 184 8 5 312 11 297 1.68e-30 121
MS.gene009893.t1 MTR_5g022420 29.450 309 177 13 8 310 25 298 2.64e-30 120
MS.gene009893.t1 MTR_5g069120 39.698 199 85 7 20 205 1 177 1.45e-29 112
MS.gene009893.t1 MTR_1g097490 28.760 379 219 15 10 374 49 390 1.75e-29 117
MS.gene009893.t1 MTR_3g036290 31.962 316 166 14 7 313 19 294 1.20e-28 115
MS.gene009893.t1 MTR_5g023000 61.458 96 35 2 289 383 5 99 1.70e-28 107
MS.gene009893.t1 MTR_2g021150 28.125 320 192 12 8 314 12 306 1.12e-27 112
MS.gene009893.t1 MTR_2g055970 28.065 367 215 13 9 364 210 538 9.12e-27 112
MS.gene009893.t1 MTR_1g094210 27.945 365 207 17 4 351 51 376 1.02e-26 110
MS.gene009893.t1 MTR_1g094210 27.778 324 183 14 4 315 51 335 1.19e-26 110
MS.gene009893.t1 MTR_4g118360 54.464 112 44 4 268 376 13 120 1.19e-26 103
MS.gene009893.t1 MTR_2g021190 26.943 386 231 15 8 374 19 372 1.87e-26 109
MS.gene009893.t1 MTR_5g011200 28.115 313 187 11 10 310 17 303 3.41e-26 108
MS.gene009893.t1 MTR_2g028140 28.490 351 187 14 10 320 5 331 6.79e-26 108
MS.gene009893.t1 MTR_7g070830 29.167 360 171 13 10 314 21 351 8.29e-26 108
MS.gene009893.t1 MTR_1g097560 30.745 322 175 14 1 312 27 310 1.08e-25 107
MS.gene009893.t1 MTR_8g098830 39.506 162 85 4 199 351 37 194 2.11e-25 103
MS.gene009893.t1 MTR_2g024110 27.077 325 172 13 10 308 4 289 2.15e-25 106
MS.gene009893.t1 MTR_2g028160 29.769 346 193 15 10 324 5 331 2.80e-25 106
MS.gene009893.t1 MTR_4g061340 27.941 340 166 13 8 314 24 317 3.14e-25 105
MS.gene009893.t1 MTR_4g133170 27.554 323 177 11 10 312 4 289 3.16e-25 105
MS.gene009893.t1 MTR_4g023430 59.574 94 35 2 1 93 32 123 4.72e-25 102
MS.gene009893.t1 MTR_4g023430 53.012 83 34 3 305 383 141 222 3.72e-15 74.3
MS.gene009893.t1 MTR_2g021155 29.213 356 202 15 8 345 34 357 5.07e-25 107
MS.gene009893.t1 MTR_1g050542 28.049 328 191 13 5 320 53 347 8.49e-25 105
MS.gene009893.t1 MTR_1g054725 27.949 390 224 19 9 374 19 375 9.12e-25 104
MS.gene009893.t1 MTR_8g467140 29.712 313 185 10 9 312 31 317 1.11e-24 103
MS.gene009893.t1 MTR_5g057790 27.523 327 189 14 10 322 46 338 1.12e-24 104
MS.gene009893.t1 MTR_3g030250 29.841 315 172 13 8 312 35 310 1.50e-24 103
MS.gene009893.t1 MTR_7g070880 28.099 363 177 14 10 317 21 354 1.69e-24 104
MS.gene009893.t1 MTR_2g046920 28.086 324 190 12 6 317 20 312 2.07e-24 103
MS.gene009893.t1 MTR_2g046900 29.448 326 191 13 6 317 24 324 2.32e-24 103
MS.gene009893.t1 MTR_3g009310 27.011 348 216 9 8 347 40 357 2.35e-24 103
MS.gene009893.t1 MTR_2g078900 29.299 314 174 15 8 308 31 309 2.89e-24 102
MS.gene009893.t1 MTR_4g108820 28.846 312 152 12 8 312 40 288 3.04e-24 102
MS.gene009893.t1 MTR_5g057710 28.221 326 186 15 10 321 46 337 3.38e-24 103
MS.gene009893.t1 MTR_3g007410 29.070 344 195 15 13 341 55 364 3.65e-24 103
MS.gene009893.t1 MTR_3g010390 27.964 329 199 12 4 313 27 336 8.79e-24 102
MS.gene009893.t1 MTR_4g107820 27.673 318 179 11 10 312 36 317 1.08e-23 101
MS.gene009893.t1 MTR_4g107780 27.673 318 179 11 10 312 36 317 1.08e-23 101
MS.gene009893.t1 MTR_4g107780 27.673 318 179 11 10 312 36 317 1.17e-23 102
MS.gene009893.t1 MTR_4g107820 27.673 318 179 11 10 312 36 317 1.25e-23 101
MS.gene009893.t1 MTR_3g007330 28.440 327 179 13 8 318 46 333 2.31e-23 100
MS.gene009893.t1 MTR_3g083010 28.698 338 176 13 10 308 6 317 2.32e-23 100
MS.gene009893.t1 MTR_2g426090 29.226 349 188 16 7 324 4 324 2.34e-23 100
MS.gene009893.t1 MTR_3g007360 28.529 333 190 14 13 330 55 354 3.16e-23 100
MS.gene009893.t1 MTR_1g056710 27.990 393 219 18 10 375 34 389 3.59e-23 100
MS.gene009893.t1 MTR_6g065980 28.664 307 175 14 8 308 14 282 4.07e-23 99.8
MS.gene009893.t1 MTR_4g129190 28.696 345 180 14 10 319 6 319 4.50e-23 100
MS.gene009893.t1 MTR_3g014570 28.182 330 189 14 8 321 27 324 7.82e-23 99.0
MS.gene009893.t1 MTR_3g006670 27.019 359 203 14 8 346 47 366 8.52e-23 99.4
MS.gene009893.t1 MTR_3g006500 28.616 318 182 12 8 312 15 300 1.09e-22 98.6
MS.gene009893.t1 MTR_3g009240 28.349 321 180 11 8 314 34 318 1.10e-22 98.6
MS.gene009893.t1 MTR_2g046830 29.630 324 185 16 6 317 21 313 1.29e-22 98.6
MS.gene009893.t1 MTR_2g025420 28.378 370 184 15 10 331 6 342 1.75e-22 98.6
MS.gene009893.t1 MTR_7g079450 45.390 141 68 6 247 383 2 137 1.98e-22 92.4
MS.gene009893.t1 MTR_2g047832 29.586 338 187 15 6 317 25 337 2.07e-22 98.2
MS.gene009893.t1 MTR_5g046300 25.840 387 229 16 8 374 2 350 2.29e-22 97.4
MS.gene009893.t1 MTR_5g046290 25.840 387 229 16 8 374 2 350 2.29e-22 97.4
MS.gene009893.t1 MTR_3g014540 28.969 359 193 18 8 345 27 344 2.33e-22 97.8
MS.gene009893.t1 MTR_2g426070 28.011 357 178 14 11 324 7 327 3.38e-22 97.4
MS.gene009893.t1 MTR_2g029990 25.729 377 241 15 11 374 52 402 3.79e-22 97.4
MS.gene009893.t1 MTR_1g068835 26.625 323 184 13 10 313 4 292 3.89e-22 97.1
MS.gene009893.t1 MTR_7g007300 26.935 323 177 13 10 316 103 382 4.54e-22 97.8
MS.gene009893.t1 MTR_4g070550 28.614 332 179 12 10 308 5 311 5.06e-22 97.1
MS.gene009893.t1 MTR_3g083640 25.066 379 243 11 8 374 53 402 5.15e-22 97.1
MS.gene009893.t1 MTR_0064s0160 25.758 396 254 13 9 378 41 422 5.46e-22 97.4
MS.gene009893.t1 MTR_2g031720 25.693 397 244 13 6 379 2 370 6.15e-22 96.7
MS.gene009893.t1 MTR_4g055060 29.118 340 172 16 3 313 23 322 6.51e-22 96.7
MS.gene009893.t1 MTR_2g028130 28.532 361 189 17 10 331 5 335 7.03e-22 96.7
MS.gene009893.t1 MTR_8g101580 25.556 360 217 10 2 344 37 362 7.17e-22 96.7
MS.gene009893.t1 MTR_0667s0010 25.852 352 177 13 10 320 6 314 9.48e-22 96.3
MS.gene009893.t1 MTR_7g067680 27.184 309 173 12 8 308 47 311 1.04e-21 95.9
MS.gene009893.t1 MTR_5g057690 26.935 323 186 13 10 322 46 328 1.26e-21 95.9
MS.gene009893.t1 MTR_4g028510 26.024 415 224 19 13 377 19 400 1.32e-21 96.3
MS.gene009893.t1 MTR_1g115160 27.974 311 179 14 9 310 21 295 1.52e-21 95.1
MS.gene009893.t1 MTR_3g036335 25.823 395 226 16 8 374 39 394 1.65e-21 95.5
MS.gene009893.t1 MTR_3g011100 24.937 397 240 12 8 374 233 601 2.05e-21 96.3
MS.gene009893.t1 MTR_0115s0020 24.146 410 249 16 10 378 10 398 2.24e-21 95.1
MS.gene009893.t1 MTR_3g023930 29.126 309 169 14 6 308 30 294 2.38e-21 94.7
MS.gene009893.t1 MTR_0044s0300 28.308 325 164 13 8 308 36 315 3.84e-21 94.4
MS.gene009893.t1 MTR_6g021880 27.245 323 191 11 21 324 31 328 4.00e-21 94.4
MS.gene009893.t1 MTR_8g073550 30.189 212 116 6 8 211 28 215 4.68e-21 91.3
MS.gene009893.t1 MTR_6g053240 26.582 316 192 13 8 308 26 316 5.27e-21 94.0
MS.gene009893.t1 MTR_1g055070 28.058 278 157 12 10 266 49 304 6.38e-21 93.6
MS.gene009893.t1 MTR_4g028660 24.460 417 229 20 9 375 15 395 6.80e-21 93.6
MS.gene009893.t1 MTR_4g027450 24.460 417 229 20 9 375 15 395 6.80e-21 93.6
MS.gene009893.t1 MTR_3g072470 27.595 395 198 18 13 366 22 369 9.98e-21 93.6
MS.gene009893.t1 MTR_6g027910 26.316 399 227 17 10 374 9 374 1.09e-20 92.8
MS.gene009893.t1 MTR_3g013740 26.606 327 204 10 10 320 44 350 1.12e-20 93.2
MS.gene009893.t1 MTR_3g007270 25.382 327 196 13 8 313 45 344 1.31e-20 93.2
MS.gene009893.t1 MTR_4g013180 27.485 342 194 9 9 321 10 326 1.78e-20 93.2
MS.gene009893.t1 MTR_5g007610 26.331 357 210 14 8 343 39 363 1.79e-20 92.4
MS.gene009893.t1 MTR_7g077970 27.778 342 208 11 8 321 5 335 2.09e-20 92.4
MS.gene009893.t1 MTR_5g069760 26.023 342 197 11 9 326 5 314 2.16e-20 92.0
MS.gene009893.t1 MTR_5g057020 26.154 325 181 13 10 322 46 323 2.34e-20 91.7
MS.gene009893.t1 MTR_3g036430 25.330 379 217 14 8 374 18 342 2.75e-20 91.3
MS.gene009893.t1 MTR_2g046800 27.893 337 209 13 8 322 12 336 2.82e-20 92.0
MS.gene009893.t1 MTR_1g114700 26.801 347 217 13 8 344 27 346 3.26e-20 91.7
MS.gene009893.t1 MTR_7g078860 28.035 346 191 14 9 321 8 328 4.13e-20 91.3
MS.gene009893.t1 MTR_3g030330 30.218 321 162 16 6 308 16 292 6.36e-20 90.5
MS.gene009893.t1 MTR_3g030350 26.302 384 240 12 8 374 33 390 6.65e-20 90.9
MS.gene009893.t1 MTR_7g060940 29.191 346 162 15 10 314 22 325 6.88e-20 90.9
MS.gene009893.t1 MTR_3g011060 30.556 360 192 19 8 343 26 351 8.78e-20 90.5
MS.gene009893.t1 MTR_3g010430 25.510 392 234 15 8 374 34 392 8.82e-20 90.5
MS.gene009893.t1 MTR_0760s0010 28.333 300 178 11 15 309 52 319 9.09e-20 90.5
MS.gene009893.t1 MTR_6g053260 26.498 317 198 13 2 308 329 620 9.94e-20 91.7
MS.gene009893.t1 MTR_0464s0020 28.286 350 187 16 13 321 26 352 1.06e-19 90.5
MS.gene009893.t1 MTR_1g068875 26.708 322 184 14 10 313 4 291 1.09e-19 90.1
MS.gene009893.t1 MTR_0128s0020 27.566 341 188 13 10 321 18 328 1.18e-19 90.1
MS.gene009893.t1 MTR_8g099460 27.928 333 174 14 10 312 5 301 1.20e-19 90.1
MS.gene009893.t1 MTR_4g031770 26.235 324 188 12 10 316 4 293 1.24e-19 89.7
MS.gene009893.t1 MTR_2g426060 27.841 352 186 14 10 324 6 326 1.27e-19 90.1
MS.gene009893.t1 MTR_2g026010 27.907 344 183 13 10 324 4 311 1.85e-19 89.7
MS.gene009893.t1 MTR_5g046260 24.324 333 181 11 8 331 2 272 2.15e-19 88.2
MS.gene009893.t1 MTR_5g022040 27.123 365 200 16 10 315 40 397 2.31e-19 89.7
MS.gene009893.t1 MTR_7g056390 28.895 353 174 16 13 321 21 340 2.50e-19 89.4
MS.gene009893.t1 MTR_7g056290 28.613 346 184 16 13 321 25 344 2.59e-19 89.4
MS.gene009893.t1 MTR_3g013770 28.704 324 181 14 8 312 31 323 2.70e-19 89.0
MS.gene009893.t1 MTR_2g021210 24.869 382 239 14 5 374 79 424 2.95e-19 89.4
MS.gene009893.t1 MTR_7g055870 26.966 356 195 14 13 321 16 353 3.23e-19 89.0
MS.gene009893.t1 MTR_5g048160 25.899 417 232 18 10 378 4 391 3.55e-19 88.6
MS.gene009893.t1 MTR_2g426020 27.729 339 172 14 10 312 6 307 3.68e-19 88.6
MS.gene009893.t1 MTR_8g046310 25.526 380 250 13 13 379 19 378 4.02e-19 88.2
MS.gene009893.t1 MTR_7g017130 25.845 414 233 18 10 382 18 398 4.66e-19 88.2
MS.gene009893.t1 MTR_3g024110 24.603 378 245 12 8 374 99 447 5.14e-19 88.6
MS.gene009893.t1 MTR_1g055200 51.190 84 36 2 124 205 5 85 5.55e-19 82.0
MS.gene009893.t1 MTR_0054s0090 23.415 410 252 13 9 377 16 404 5.62e-19 88.2
MS.gene009893.t1 MTR_2g024100 27.190 331 170 12 14 308 11 306 5.81e-19 88.2
MS.gene009893.t1 MTR_1g068860 26.006 323 188 12 10 313 4 294 7.95e-19 87.4
MS.gene009893.t1 MTR_3g007430 27.019 322 174 15 13 312 46 328 8.76e-19 87.4
MS.gene009893.t1 MTR_4g122840 41.538 130 37 2 254 378 165 260 8.84e-19 85.5
MS.gene009893.t1 MTR_3g030310 26.433 314 192 10 8 308 19 306 1.05e-18 87.4
MS.gene009893.t1 MTR_4g030830 26.446 363 187 14 3 323 2 326 1.05e-18 87.4
MS.gene009893.t1 MTR_7g070440 27.746 346 192 13 5 323 2 316 1.32e-18 86.7
MS.gene009893.t1 MTR_7g066850 25.182 413 236 16 10 377 23 407 1.32e-18 87.4
MS.gene009893.t1 MTR_3g011020 28.399 331 180 13 8 322 26 315 1.45e-18 86.7
MS.gene009893.t1 MTR_2g021050 27.964 329 163 15 10 312 5 285 1.46e-18 86.7
MS.gene009893.t1 MTR_7g050480 28.963 328 169 12 9 308 21 312 1.46e-18 87.0
MS.gene009893.t1 MTR_1g088120 26.225 347 193 11 13 321 13 334 1.54e-18 87.0
MS.gene009893.t1 MTR_4g019990 26.406 409 231 16 9 373 5 387 1.74e-18 86.7
MS.gene009893.t1 MTR_7g017170 26.757 370 207 16 10 346 18 356 2.27e-18 86.3
MS.gene009893.t1 MTR_2g031640 26.393 341 188 17 10 324 6 309 2.31e-18 86.3
MS.gene009893.t1 MTR_6g080680 24.938 401 238 16 9 374 18 390 2.49e-18 86.3
MS.gene009893.t1 MTR_2g043410 29.412 340 184 16 13 321 25 339 2.55e-18 86.3
MS.gene009893.t1 MTR_2g425980 26.087 345 176 15 10 312 5 312 3.03e-18 86.3
MS.gene009893.t1 MTR_7g079640 25.401 374 235 13 4 358 7 355 3.13e-18 85.9
MS.gene009893.t1 MTR_0627s0010 24.737 380 228 15 10 356 38 392 3.24e-18 85.9
MS.gene009893.t1 MTR_2g461450 29.503 322 168 15 10 314 18 297 3.63e-18 85.5
MS.gene009893.t1 MTR_8g046200 24.408 422 258 13 7 379 13 422 3.65e-18 85.9
MS.gene009893.t1 MTR_7g055930 25.698 358 197 13 13 321 16 353 3.80e-18 85.9
MS.gene009893.t1 MTR_2g043400 28.698 338 189 15 13 321 26 340 4.36e-18 85.5
MS.gene009893.t1 MTR_7g061090 26.000 350 188 16 9 317 21 340 4.63e-18 85.5
MS.gene009893.t1 MTR_1g112930 26.710 307 188 13 8 307 23 299 4.96e-18 85.1
MS.gene009893.t1 MTR_4g122860 36.111 180 90 3 201 376 156 314 5.10e-18 84.7
MS.gene009893.t1 MTR_4g122860 55.000 80 33 2 8 86 68 145 2.86e-14 73.6
MS.gene009893.t1 MTR_2g078850 27.124 306 184 11 13 308 33 309 5.40e-18 85.1
MS.gene009893.t1 MTR_5g021880 25.215 349 202 10 10 308 39 378 5.78e-18 85.9
MS.gene009893.t1 MTR_5g021880 25.215 349 202 10 10 308 39 378 6.39e-18 85.5
MS.gene009893.t1 MTR_5g021880 25.215 349 202 10 10 308 39 378 7.06e-18 85.5
MS.gene009893.t1 MTR_7g062060 26.705 352 200 15 9 322 11 342 7.38e-18 84.7
MS.gene009893.t1 MTR_6g086825 24.940 417 238 17 9 377 69 458 7.84e-18 85.1
MS.gene009893.t1 MTR_7g013590 26.176 340 202 15 3 322 24 334 8.89e-18 84.7
MS.gene009893.t1 MTR_5g022090 28.135 327 166 15 4 309 25 303 1.04e-17 84.3
MS.gene009893.t1 MTR_5g027330 23.641 368 223 13 14 357 44 377 1.06e-17 84.7
MS.gene009893.t1 MTR_7g066000 25.641 351 188 15 9 320 24 340 1.10e-17 84.3
MS.gene009893.t1 MTR_5g027370 23.641 368 223 13 14 357 33 366 1.20e-17 84.3
MS.gene009893.t1 MTR_1g054575 26.567 335 193 16 5 325 47 342 1.35e-17 85.1
MS.gene009893.t1 MTR_4g013175 27.208 419 223 16 13 368 13 412 1.51e-17 84.0
MS.gene009893.t1 MTR_7g050520 28.354 328 171 12 9 308 21 312 1.60e-17 84.0
MS.gene009893.t1 MTR_7g052150 28.614 339 182 16 10 321 22 327 1.72e-17 84.0
MS.gene009893.t1 MTR_5g008530 71.930 57 14 1 10 66 18 72 1.76e-17 76.6
MS.gene009893.t1 MTR_2g031680 24.085 328 183 11 10 312 6 292 1.94e-17 83.6
MS.gene009893.t1 MTR_3g024040 25.321 312 190 12 17 321 38 313 2.20e-17 83.2
MS.gene009893.t1 MTR_3g024150 26.282 312 177 14 13 308 38 312 2.69e-17 83.2
MS.gene009893.t1 MTR_1g058190 25.617 324 177 11 9 316 34 309 3.11e-17 82.8
MS.gene009893.t1 MTR_5g059430 24.155 414 255 17 9 377 25 424 3.41e-17 83.2
MS.gene009893.t1 MTR_3g437520 28.000 350 191 15 13 321 26 355 4.67e-17 82.8
MS.gene009893.t1 MTR_1g055375 24.412 340 208 13 13 332 7 317 5.43e-17 82.0
MS.gene009893.t1 MTR_2g021800 25.908 413 245 19 9 375 15 412 5.81e-17 82.4
MS.gene009893.t1 MTR_1g442850 26.190 336 190 14 13 320 8 313 6.55e-17 82.0
MS.gene009893.t1 MTR_4g014370 23.716 409 261 14 9 377 10 407 6.67e-17 82.0
MS.gene009893.t1 MTR_3g023940 25.868 317 187 9 8 308 32 316 6.74e-17 82.0
MS.gene009893.t1 MTR_7g016930 25.595 336 183 15 9 317 15 310 6.84e-17 81.3
MS.gene009893.t1 MTR_7g057270 25.937 347 189 14 10 317 26 343 7.20e-17 82.0
MS.gene009893.t1 MTR_3g007300 27.692 325 164 15 8 322 47 310 1.05e-16 81.3
MS.gene009893.t1 MTR_4g117550 25.945 397 225 17 9 377 16 371 1.20e-16 80.9
MS.gene009893.t1 MTR_7g056003 28.125 352 172 16 13 321 18 331 1.29e-16 81.3
MS.gene009893.t1 MTR_4g055820 23.988 346 213 11 3 312 7 338 1.30e-16 80.9
MS.gene009893.t1 MTR_1g055145 50.562 89 44 0 13 101 36 124 1.39e-16 79.7
MS.gene009893.t1 MTR_0054s0100 22.619 420 245 13 9 377 16 406 1.49e-16 80.9
MS.gene009893.t1 MTR_4g130330 24.697 413 246 18 5 377 2 389 1.59e-16 80.9
MS.gene009893.t1 MTR_6g055210 26.039 361 203 14 8 331 20 353 1.68e-16 81.3
MS.gene009893.t1 MTR_0242s0060 25.287 348 203 13 9 321 8 333 1.76e-16 80.9
MS.gene009893.t1 MTR_0242s0040 25.287 348 203 13 9 321 8 333 1.76e-16 80.9
MS.gene009893.t1 MTR_0128s0070 26.239 343 195 13 7 321 19 331 1.78e-16 80.9
MS.gene009893.t1 MTR_6g090180 23.786 412 256 12 4 375 41 434 2.10e-16 80.9
MS.gene009893.t1 MTR_4g028750 27.405 343 192 18 2 308 8 329 2.21e-16 80.5
MS.gene009893.t1 MTR_7g079160 28.969 359 193 18 13 321 11 357 2.23e-16 80.9
MS.gene009893.t1 MTR_3g010970 25.620 363 208 16 13 366 51 360 2.71e-16 80.1
MS.gene009893.t1 MTR_7g078840 27.606 355 204 15 9 321 9 352 3.35e-16 80.1
MS.gene009893.t1 MTR_4g013185 28.011 357 186 15 13 321 13 346 3.75e-16 80.1
MS.gene009893.t1 MTR_1g061330 23.393 389 247 13 10 379 4 360 3.90e-16 79.7
MS.gene009893.t1 MTR_5g069930 25.872 344 182 11 9 317 5 310 4.02e-16 79.3
MS.gene009893.t1 MTR_7g445890 25.000 384 197 13 10 351 16 350 4.21e-16 79.3
MS.gene009893.t1 MTR_6g013270 26.479 355 194 14 8 334 27 342 4.68e-16 79.3
MS.gene009893.t1 MTR_6g034720 40.833 120 63 4 151 264 53 170 5.72e-16 76.6
MS.gene009893.t1 MTR_3g010520 26.837 313 168 13 8 308 23 286 6.20e-16 79.0
MS.gene009893.t1 MTR_4g024890 26.471 340 201 11 1 317 1 314 6.41e-16 79.0
MS.gene009893.t1 MTR_3g009260 26.250 320 185 11 8 314 39 320 7.21e-16 79.0
MS.gene009893.t1 MTR_6g048120 27.273 319 194 14 5 308 31 326 8.54e-16 79.0
MS.gene009893.t1 MTR_2g104340 22.881 354 215 11 1 318 5 336 9.45e-16 78.6
MS.gene009893.t1 MTR_7g066100 25.899 417 229 17 9 376 10 395 1.10e-15 78.2
MS.gene009893.t1 MTR_7g078900 26.124 356 188 14 13 321 15 342 1.41e-15 78.2
MS.gene009893.t1 MTR_7g052670 25.408 429 233 18 9 374 20 424 1.67e-15 78.2
MS.gene009893.t1 MTR_7g017040 25.659 417 235 20 9 382 15 399 1.82e-15 77.8
MS.gene009893.t1 MTR_5g096900 29.044 272 164 9 9 265 11 268 1.85e-15 77.0
MS.gene009893.t1 MTR_2g025960 29.954 217 117 9 125 312 5 215 1.91e-15 76.6
MS.gene009893.t1 MTR_5g096710 26.822 343 188 14 10 321 23 333 2.10e-15 77.4
MS.gene009893.t1 MTR_5g057643 27.935 247 145 10 10 249 46 266 2.22e-15 75.9
MS.gene009893.t1 MTR_3g096250 26.266 316 157 12 8 314 45 293 2.52e-15 77.0
MS.gene009893.t1 MTR_2g022000 25.064 391 233 18 9 353 15 391 3.13e-15 77.0
MS.gene009893.t1 MTR_0097s0030 25.153 326 191 10 13 314 17 313 3.44e-15 76.6
MS.gene009893.t1 MTR_2g047240 25.153 326 191 10 13 314 17 313 3.44e-15 76.6
MS.gene009893.t1 MTR_5g009060 27.059 340 185 15 8 308 23 338 3.50e-15 77.0
MS.gene009893.t1 MTR_2g021252 23.529 374 237 11 13 375 50 385 4.49e-15 76.3
MS.gene009893.t1 MTR_7g077070 25.600 375 223 15 10 343 16 375 4.56e-15 76.6
MS.gene009893.t1 MTR_7g061050 25.806 372 207 11 9 343 12 351 7.50e-15 75.9
MS.gene009893.t1 MTR_5g096630 23.341 437 230 16 10 380 18 415 7.90e-15 75.9
MS.gene009893.t1 MTR_6g048140 22.727 374 236 13 8 368 37 370 8.13e-15 75.9
MS.gene009893.t1 MTR_4g028680 24.396 414 238 19 9 377 15 398 8.59e-15 75.9
MS.gene009893.t1 MTR_8g066440 25.060 415 243 18 2 375 15 402 9.77e-15 75.5
MS.gene009893.t1 MTR_7g022600 25.070 355 193 13 13 320 26 354 1.01e-14 75.5
MS.gene009893.t1 MTR_6g046320 25.723 346 200 13 10 309 39 373 1.30e-14 75.5
MS.gene009893.t1 MTR_6g007135 25.836 329 184 13 13 315 29 323 1.32e-14 75.1
MS.gene009893.t1 MTR_7g061010 28.358 335 173 17 10 314 22 319 1.42e-14 75.1
MS.gene009893.t1 MTR_2g078870 27.979 193 109 8 127 308 59 232 1.57e-14 73.9
MS.gene009893.t1 MTR_5g043160 26.211 351 194 16 13 317 53 384 1.86e-14 75.1
MS.gene009893.t1 MTR_1g029650 26.190 336 196 15 13 321 11 321 1.87e-14 74.7
MS.gene009893.t1 MTR_2g047200 26.099 364 183 18 10 322 20 348 2.01e-14 74.7
MS.gene009893.t1 MTR_7g078040 26.361 349 209 12 10 321 9 346 2.29e-14 74.7
MS.gene009893.t1 MTR_3g058480 27.007 274 158 10 8 266 37 283 2.62e-14 73.6
MS.gene009893.t1 MTR_7g056260 25.904 332 185 11 13 314 17 317 3.41e-14 73.2
MS.gene009893.t1 MTR_5g056020 25.173 433 231 18 8 374 15 420 4.67e-14 73.9
MS.gene009893.t1 MTR_7g028660 25.000 348 196 11 9 320 10 328 5.03e-14 73.2
MS.gene009893.t1 MTR_0267s0050 23.947 380 223 16 13 352 9 362 5.07e-14 73.2
MS.gene009893.t1 MTR_7g066030 24.789 355 200 12 2 317 13 339 6.51e-14 73.2
MS.gene009893.t1 MTR_5g037680 23.415 410 227 17 13 374 11 381 8.84e-14 72.8
MS.gene009893.t1 MTR_7g055987 28.779 344 163 17 13 321 23 319 9.26e-14 72.4
MS.gene009893.t1 MTR_2g104280 26.062 353 198 14 9 318 13 345 1.02e-13 72.4
MS.gene009893.t1 MTR_7g069550 24.079 353 205 11 1 312 5 335 1.04e-13 72.4
MS.gene009893.t1 MTR_0129s0070 23.515 404 247 16 13 381 20 396 1.36e-13 72.0
MS.gene009893.t1 MTR_2g021770 23.892 406 253 14 13 377 15 405 1.37e-13 72.0
MS.gene009893.t1 MTR_6g017280 25.664 339 199 13 10 321 9 321 1.49e-13 72.0
MS.gene009893.t1 MTR_5g057040 29.665 209 116 9 10 211 46 230 1.51e-13 72.8
MS.gene009893.t1 MTR_5g023570 43.478 92 48 3 9 100 36 123 1.52e-13 67.8
MS.gene009893.t1 MTR_5g010660 25.325 308 191 10 10 308 34 311 1.69e-13 72.0
MS.gene009893.t1 MTR_4g033495 25.072 347 189 16 10 319 27 339 1.77e-13 72.0
MS.gene009893.t1 MTR_6g016285 23.502 434 226 14 10 374 21 417 1.80e-13 72.0
MS.gene009893.t1 MTR_3g010440 25.625 320 153 11 8 322 24 263 1.97e-13 71.2
MS.gene009893.t1 MTR_7g056170 23.370 368 198 10 1 321 66 396 2.01e-13 71.6
MS.gene009893.t1 MTR_2g437110 24.490 392 248 14 10 374 22 392 2.10e-13 71.6
MS.gene009893.t1 MTR_7g056737 27.647 340 182 12 9 320 21 324 2.36e-13 71.2
MS.gene009893.t1 MTR_4g102410 23.301 412 250 15 9 377 60 448 3.34e-13 71.2
MS.gene009893.t1 MTR_7g091640 24.484 339 195 13 9 314 34 344 3.95e-13 70.5
MS.gene009893.t1 MTR_7g055977 24.332 337 195 13 9 317 6 310 5.13e-13 70.1
MS.gene009893.t1 MTR_7g056797 25.490 408 235 17 9 374 22 402 5.23e-13 70.1
MS.gene009893.t1 MTR_7g062100 26.254 339 193 13 10 321 24 332 5.34e-13 70.1
MS.gene009893.t1 MTR_0707s0020 22.989 435 254 17 9 376 25 445 5.52e-13 70.5
MS.gene009893.t1 MTR_2g064950 24.227 388 213 14 13 354 13 365 5.62e-13 70.1
MS.gene009893.t1 MTR_3g011650 26.360 239 140 9 8 241 77 284 7.84e-13 68.6
MS.gene009893.t1 MTR_0649s0020 25.659 417 218 19 10 374 11 387 1.00e-12 69.3
MS.gene009893.t1 MTR_4g030110 24.776 335 178 12 10 314 30 320 1.05e-12 69.3
MS.gene009893.t1 MTR_7g055850 30.928 194 102 7 13 183 16 200 1.12e-12 68.2
MS.gene009893.t1 MTR_4g037465 25.434 346 202 15 8 326 19 335 1.52e-12 68.9
MS.gene009893.t1 MTR_1g115185 26.646 319 200 13 8 316 37 331 1.57e-12 68.9
MS.gene009893.t1 MTR_7g077990 25.150 334 199 13 10 319 17 323 1.98e-12 68.6
MS.gene009893.t1 MTR_3g009250 27.197 239 137 8 8 241 39 245 2.08e-12 67.0
MS.gene009893.t1 MTR_8g101940 27.129 317 185 13 10 308 2 290 3.01e-12 67.8
MS.gene009893.t1 MTR_4g006350 25.816 337 199 13 10 318 494 807 3.71e-12 68.6
MS.gene009893.t1 MTR_6g017305 26.702 191 125 5 138 314 14 203 3.90e-12 66.6
MS.gene009893.t1 MTR_7g035295 26.209 393 193 19 10 359 16 354 4.36e-12 67.4
MS.gene009893.t1 MTR_8g039500 26.284 331 180 14 9 308 11 308 4.50e-12 67.0
MS.gene009893.t1 MTR_4g031020 25.843 356 198 16 10 314 15 355 4.87e-12 67.4
MS.gene009893.t1 MTR_3g058440 25.869 259 150 10 10 254 35 265 5.57e-12 66.6
MS.gene009893.t1 MTR_5g097330 24.010 404 253 14 13 380 19 404 6.59e-12 67.0
MS.gene009893.t1 MTR_6g086920 22.940 449 251 18 9 376 37 471 1.05e-11 66.6
MS.gene009893.t1 MTR_5g043605 28.030 264 152 14 77 308 14 271 1.10e-11 65.9
MS.gene009893.t1 MTR_2g021950 25.378 331 193 14 13 308 19 330 1.32e-11 65.9
MS.gene009893.t1 MTR_7g056200 25.434 346 166 16 9 317 22 312 2.64e-11 65.1
MS.gene009893.t1 MTR_3g006300 62.791 43 16 0 8 50 28 70 2.65e-11 60.1
MS.gene009893.t1 MTR_2g047892 24.211 380 221 17 10 351 22 372 2.84e-11 65.1
MS.gene009893.t1 MTR_4g030090 26.627 338 173 14 10 308 14 315 2.94e-11 65.1
MS.gene009893.t1 MTR_5g072060 24.923 325 201 10 9 312 5 307 4.16e-11 65.1
MS.gene009893.t1 MTR_8g013005 59.649 57 21 2 328 383 4 59 5.75e-11 58.2
MS.gene009893.t1 MTR_7g066080 26.301 346 193 15 10 320 16 334 6.38e-11 63.9
MS.gene009893.t1 MTR_0831s0010 24.118 340 200 15 9 318 49 360 7.03e-11 63.9
MS.gene009893.t1 MTR_7g050490 30.189 212 108 8 9 210 7 188 7.55e-11 61.2
MS.gene009893.t1 MTR_8g063310 24.852 338 206 14 3 313 15 331 8.09e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009893.t1 AT3G23880 30.514 331 177 13 1 310 1 299 1.35e-26 109
MS.gene009893.t1 AT3G06240 26.901 342 198 12 6 311 32 357 1.79e-23 101
MS.gene009893.t1 AT4G12560 27.273 330 185 12 10 313 4 304 6.65e-21 94.0
MS.gene009893.t1 AT4G12560 27.273 330 185 12 10 313 4 304 6.65e-21 94.0
MS.gene009893.t1 AT4G12560 27.273 330 185 12 10 313 4 304 6.65e-21 94.0
MS.gene009893.t1 AT2G40925 26.667 330 191 14 4 312 21 320 1.44e-18 87.0
MS.gene009893.t1 AT2G40910 26.006 323 195 11 10 313 69 366 3.46e-18 86.3
MS.gene009893.t1 AT2G40910 26.006 323 195 11 10 313 62 359 4.27e-18 85.9
MS.gene009893.t1 AT2G16810 28.464 267 155 10 9 267 40 278 4.50e-17 81.3
MS.gene009893.t1 AT3G10240 26.645 304 184 12 10 305 27 299 2.81e-15 77.0
MS.gene009893.t1 AT3G21120 24.151 265 169 9 9 265 2 242 3.07e-15 77.0
MS.gene009893.t1 AT5G62510 26.462 325 201 12 8 320 42 340 1.97e-14 74.7
MS.gene009893.t1 AT3G52320 27.762 353 205 17 8 351 25 336 2.10e-14 74.3
MS.gene009893.t1 AT2G40920 26.168 321 191 16 15 313 59 355 2.62e-14 74.3
MS.gene009893.t1 AT3G16210 24.451 319 181 13 9 316 4 273 5.65e-14 73.2
MS.gene009893.t1 AT2G40920 26.250 320 190 16 16 313 1 296 8.83e-14 72.4
MS.gene009893.t1 AT5G62660 25.836 329 187 13 8 313 39 333 1.00e-12 69.3
MS.gene009893.t1 AT3G17490 25.559 313 188 13 8 307 4 284 1.06e-12 69.3
MS.gene009893.t1 AT3G47150 54.545 55 25 0 9 63 11 65 1.08e-12 68.9
MS.gene009893.t1 AT1G30790 26.523 279 166 12 3 266 2 256 2.63e-12 68.2
MS.gene009893.t1 AT1G50870 23.129 294 193 9 11 298 32 298 6.19e-12 67.0
MS.gene009893.t1 AT1G33530 26.994 326 183 16 10 324 97 378 7.97e-12 67.0
MS.gene009893.t1 AT2G04920 23.457 324 212 11 10 324 4 300 9.33e-12 66.2
MS.gene009893.t1 AT5G42430 24.611 321 201 11 1 310 1 291 1.14e-11 66.2
MS.gene009893.t1 AT1G47790 24.497 298 183 12 10 298 25 289 1.56e-11 65.9
MS.gene009893.t1 AT4G19940 26.198 313 181 12 8 298 33 317 1.66e-11 65.9
MS.gene009893.t1 AT4G21240 24.688 320 191 14 10 314 36 320 7.73e-11 63.5
MS.gene009893.t1 AT1G32420 24.830 294 181 11 10 298 37 295 7.98e-11 63.2
MS.gene009893.t1 AT1G60370 30.256 195 110 8 1 191 1 173 9.93e-11 62.4

Find 71 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATTATTTCTATGGTTT+TGG 0.152964 5.3:+55842844 MS.gene009893:CDS
AAGACTCTTGTTCTTTCTTT+TGG 0.207374 5.3:+55843276 MS.gene009893:CDS
GTCCTAGAGTGTATGATTTA+TGG 0.242282 5.3:+55843154 MS.gene009893:CDS
GAATCTTTGCTTTCACTTCC+TGG 0.245425 5.3:+55843462 MS.gene009893:CDS
GTTATTCAAGCCTTTATCTA+TGG 0.251337 5.3:+55842758 MS.gene009893:CDS
TTAGAAGCAAATTATTTCTA+TGG 0.288587 5.3:+55842838 MS.gene009893:CDS
AATACAACGTGCAATCTTCT+TGG 0.293336 5.3:+55843250 MS.gene009893:CDS
ATTAATTCAATAGGTAGATA+TGG 0.309314 5.3:-55842376 None:intergenic
ATAATGGTATAGTTGAAATA+TGG 0.314057 5.3:+55843217 MS.gene009893:CDS
GGATTTATGAACAAAATTCT+AGG 0.331838 5.3:-55842532 None:intergenic
TATGATTTATGGCTATTTAG+AGG 0.334732 5.3:+55843165 MS.gene009893:CDS
TAGATAAAGGCTTGAATAAC+CGG 0.360813 5.3:-55842755 None:intergenic
GAAATAATTTGCTTCTAAAT+CGG 0.363111 5.3:-55842833 None:intergenic
ATAGAGTTGCCTTTGCCTAA+TGG 0.368828 5.3:+55843132 MS.gene009893:CDS
ACTTGACTGGTAACCTTAGT+AGG 0.371984 5.3:-55842408 None:intergenic
AGAGTAGATACGCTCTTAAA+TGG 0.374090 5.3:+55843030 MS.gene009893:CDS
TTGGCCAAGTATAATGATAA+AGG 0.374960 5.3:+55843375 MS.gene009893:CDS
TCTGATATGTACATTGATAA+TGG 0.380566 5.3:+55843201 MS.gene009893:CDS
GTGGTTTGTTATCTCACTTT+GGG 0.388159 5.3:+55842926 MS.gene009893:CDS
AGATCAACGAATGTTATTGT+TGG 0.399345 5.3:+55843084 MS.gene009893:CDS
CTGTCCTTTATCATTATACT+TGG 0.401300 5.3:-55843379 None:intergenic
GGTGGTTTGTTATCTCACTT+TGG 0.409078 5.3:+55842925 MS.gene009893:CDS
ATTTGAATGATTAATTCAAT+AGG 0.412441 5.3:-55842385 None:intergenic
ATAGATAGAGATTCAAGATC+TGG 0.413938 5.3:-55842553 None:intergenic
TCAAGTGTGTTTGTAAGTCT+TGG 0.419446 5.3:+55842443 MS.gene009893:CDS
TCTTAAATGGTGTTATTCAC+TGG 0.426216 5.3:+55843043 MS.gene009893:CDS
TGGATGGATTCCATAGATAA+AGG 0.434024 5.3:-55842768 None:intergenic
TTGGATTTCATTTAACAGAA+AGG 0.439356 5.3:+55843103 MS.gene009893:CDS
TAATCATTCAAATCCTACTA+AGG 0.443687 5.3:+55842395 MS.gene009893:CDS
TCCTGGTGGTGACACTGATC+AGG 0.446710 5.3:+55843479 MS.gene009893:CDS
TTCTTCTTCTTCGTTGGACA+TGG 0.448943 5.3:+55842660 MS.gene009893:CDS
AAATGGTGTTATTCACTGGT+TGG 0.457182 5.3:+55843047 MS.gene009893:CDS
TGATAGTTCTTCTTCTTCGT+TGG 0.464322 5.3:+55842654 MS.gene009893:CDS
TCTAGGAGTGTGTGCGTTGG+CGG 0.479262 5.3:-55842515 None:intergenic
GGAATCATGAACAGTAGTAA+AGG 0.490153 5.3:-55842812 None:intergenic
GAATCATGAACAGTAGTAAA+GGG 0.494070 5.3:-55842811 None:intergenic
CGATAGTGCTTCTTATTCAC+CGG 0.504441 5.3:+55842600 MS.gene009893:CDS
TCCTACTCGGACCATGATGA+TGG 0.505877 5.3:+55843417 MS.gene009893:CDS
TTAATTCAATAGGTAGATAT+GGG 0.519095 5.3:-55842375 None:intergenic
TCATACACTCTAGGACCATT+AGG 0.527398 5.3:-55843147 None:intergenic
TGGAACTGACGATAGTGTAT+TGG 0.529716 5.3:+55843356 MS.gene009893:CDS
TAATGGTATAGTTGAAATAT+GGG 0.533072 5.3:+55843218 MS.gene009893:CDS
TAATACGTGGAAGGAAATTG+AGG 0.533898 5.3:+55842966 MS.gene009893:CDS
GCCTGATCAGTGTCACCACC+AGG 0.539835 5.3:-55843480 None:intergenic
CATAGCACATTGAAAGAACC+AGG 0.552532 5.3:-55842891 None:intergenic
TGGCTATTTAGAGGATGTCT+CGG 0.559992 5.3:+55843174 MS.gene009893:CDS
TTTGGGCAAAAGTAGTGCAT+GGG 0.560044 5.3:-55843306 None:intergenic
TATCTATGGAATCCATCCAC+TGG 0.565657 5.3:+55842772 MS.gene009893:CDS
GATAACAAACCACCCGCACT+CGG 0.580473 5.3:-55842916 None:intergenic
ATGTGCTATGATCCGAGTGC+GGG 0.591052 5.3:+55842904 MS.gene009893:CDS
AATACGTGGAAGGAAATTGA+GGG 0.594846 5.3:+55842967 MS.gene009893:CDS
AAGCGTATAAGAGACTTGAC+TGG 0.597638 5.3:-55842421 None:intergenic
ATTGAGAGCTAATACGTGGA+AGG 0.605761 5.3:+55842957 MS.gene009893:CDS
TGAGTCTACTGATGATTACC+TGG 0.607214 5.3:+55842873 MS.gene009893:CDS
TGTCTGTGAACTCCAGTGGA+TGG 0.608402 5.3:-55842784 None:intergenic
GATGTTAGAGGTGAATGTAG+AGG 0.609473 5.3:+55842718 MS.gene009893:CDS
TTCTGTATACATTACCACTA+GGG 0.610947 5.3:-55843442 None:intergenic
AGCCATAAATCATACACTCT+AGG 0.618217 5.3:-55843156 None:intergenic
CCACTAGGGATCCATCATCA+TGG 0.620597 5.3:-55843428 None:intergenic
GCTAGAGCATCACTCCTACT+CGG 0.623312 5.3:+55843404 MS.gene009893:CDS
TGCTATGATCCGAGTGCGGG+TGG 0.623842 5.3:+55842907 MS.gene009893:CDS
TCTTTGCTTTCACTTCCTGG+TGG 0.625428 5.3:+55843465 MS.gene009893:CDS
ATTCTGTATACATTACCACT+AGG 0.630116 5.3:-55843443 None:intergenic
AATTCTAGGAGTGTGTGCGT+TGG 0.632309 5.3:-55842518 None:intergenic
ACGTGGAAGGAAATTGAGGG+TGG 0.636923 5.3:+55842970 MS.gene009893:CDS
TATTTGTCTGTGAACTCCAG+TGG 0.657723 5.3:-55842788 None:intergenic
AATGTGCTATGATCCGAGTG+CGG 0.661055 5.3:+55842903 MS.gene009893:CDS
TCCATCATCATGGTCCGAGT+AGG 0.664813 5.3:-55843418 None:intergenic
ACTCTAGGACCATTAGGCAA+AGG 0.668741 5.3:-55843141 None:intergenic
CCATGATGATGGATCCCTAG+TGG 0.673107 5.3:+55843428 MS.gene009893:CDS
TCTCATTGAGAGCTAATACG+TGG 0.692239 5.3:+55842953 MS.gene009893:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGAATGATTAATTCAAT+AGG - chr5.3:55842388-55842407 None:intergenic 15.0%
!! TCAAATAAAAAATTAATGTC+CGG - chr5.3:55842622-55842641 None:intergenic 15.0%
!! ACATCAAGATCTAAAAAATA+TGG - chr5.3:55842703-55842722 None:intergenic 20.0%
!! ATAATGGTATAGTTGAAATA+TGG + chr5.3:55843217-55843236 MS.gene009893:CDS 20.0%
!! ATTAATTCAATAGGTAGATA+TGG - chr5.3:55842379-55842398 None:intergenic 20.0%
!! CATCAAGATCTAAAAAATAT+GGG - chr5.3:55842702-55842721 None:intergenic 20.0%
!! TAATGGTATAGTTGAAATAT+GGG + chr5.3:55843218-55843237 MS.gene009893:CDS 20.0%
!! TTAATTCAATAGGTAGATAT+GGG - chr5.3:55842378-55842397 None:intergenic 20.0%
!!! CAAATTATTTCTATGGTTTT+GGG + chr5.3:55842845-55842864 MS.gene009893:CDS 20.0%
!!! CACTTTTTGTACAATATTTT+GGG - chr5.3:55843326-55843345 None:intergenic 20.0%
!!! GAAATAATTTGCTTCTAAAT+CGG - chr5.3:55842836-55842855 None:intergenic 20.0%
!!! GGACATTAATTTTTTATTTG+AGG + chr5.3:55842621-55842640 MS.gene009893:CDS 20.0%
!!! TCACTTTTTGTACAATATTT+TGG - chr5.3:55843327-55843346 None:intergenic 20.0%
!!! TTAGAAGCAAATTATTTCTA+TGG + chr5.3:55842838-55842857 MS.gene009893:CDS 20.0%
! GGATTTATGAACAAAATTCT+AGG - chr5.3:55842535-55842554 None:intergenic 25.0%
! TAATCATTCAAATCCTACTA+AGG + chr5.3:55842395-55842414 MS.gene009893:CDS 25.0%
! TATGATTTATGGCTATTTAG+AGG + chr5.3:55843165-55843184 MS.gene009893:CDS 25.0%
! TCTGATATGTACATTGATAA+TGG + chr5.3:55843201-55843220 MS.gene009893:CDS 25.0%
! TTGGATTTCATTTAACAGAA+AGG + chr5.3:55843103-55843122 MS.gene009893:CDS 25.0%
!! TTTTTAGATCTTGATGTTAG+AGG + chr5.3:55842706-55842725 MS.gene009893:CDS 25.0%
!!! GCAAATTATTTCTATGGTTT+TGG + chr5.3:55842844-55842863 MS.gene009893:CDS 25.0%
ACAAAAAGTGATGATATCGT+TGG + chr5.3:55843336-55843355 MS.gene009893:CDS 30.0%
AGATCAACGAATGTTATTGT+TGG + chr5.3:55843084-55843103 MS.gene009893:CDS 30.0%
ATAGATAGAGATTCAAGATC+TGG - chr5.3:55842556-55842575 None:intergenic 30.0%
ATTCTGTATACATTACCACT+AGG - chr5.3:55843446-55843465 None:intergenic 30.0%
CTGTCCTTTATCATTATACT+TGG - chr5.3:55843382-55843401 None:intergenic 30.0%
GAATCATGAACAGTAGTAAA+GGG - chr5.3:55842814-55842833 None:intergenic 30.0%
GTTATTCAAGCCTTTATCTA+TGG + chr5.3:55842758-55842777 MS.gene009893:CDS 30.0%
TAGATAAAGGCTTGAATAAC+CGG - chr5.3:55842758-55842777 None:intergenic 30.0%
TTCTGTATACATTACCACTA+GGG - chr5.3:55843445-55843464 None:intergenic 30.0%
TTGGCCAAGTATAATGATAA+AGG + chr5.3:55843375-55843394 MS.gene009893:CDS 30.0%
! AAGACTCTTGTTCTTTCTTT+TGG + chr5.3:55843276-55843295 MS.gene009893:CDS 30.0%
!! TCTTAAATGGTGTTATTCAC+TGG + chr5.3:55843043-55843062 MS.gene009893:CDS 30.0%
AATACAACGTGCAATCTTCT+TGG + chr5.3:55843250-55843269 MS.gene009893:CDS 35.0%
AATACGTGGAAGGAAATTGA+GGG + chr5.3:55842967-55842986 MS.gene009893:CDS 35.0%
AGAGTAGATACGCTCTTAAA+TGG + chr5.3:55843030-55843049 MS.gene009893:CDS 35.0%
AGCCATAAATCATACACTCT+AGG - chr5.3:55843159-55843178 None:intergenic 35.0%
GGAATCATGAACAGTAGTAA+AGG - chr5.3:55842815-55842834 None:intergenic 35.0%
GTCCTAGAGTGTATGATTTA+TGG + chr5.3:55843154-55843173 MS.gene009893:CDS 35.0%
TAATACGTGGAAGGAAATTG+AGG + chr5.3:55842966-55842985 MS.gene009893:CDS 35.0%
TCAAGTGTGTTTGTAAGTCT+TGG + chr5.3:55842443-55842462 MS.gene009893:CDS 35.0%
TGATAGTTCTTCTTCTTCGT+TGG + chr5.3:55842654-55842673 MS.gene009893:CDS 35.0%
! ACTCTTGTTCTTTCTTTTGG+TGG + chr5.3:55843279-55843298 MS.gene009893:CDS 35.0%
! TGGATGGATTCCATAGATAA+AGG - chr5.3:55842771-55842790 None:intergenic 35.0%
!! AAATGGTGTTATTCACTGGT+TGG + chr5.3:55843047-55843066 MS.gene009893:CDS 35.0%
!! AGAGGCTTTATACTTTTCTC+CGG + chr5.3:55842736-55842755 MS.gene009893:CDS 35.0%
!! GTGGTTTGTTATCTCACTTT+GGG + chr5.3:55842926-55842945 MS.gene009893:CDS 35.0%
AAGCGTATAAGAGACTTGAC+TGG - chr5.3:55842424-55842443 None:intergenic 40.0%
ACTTGACTGGTAACCTTAGT+AGG - chr5.3:55842411-55842430 None:intergenic 40.0%
ATAGAGTTGCCTTTGCCTAA+TGG + chr5.3:55843132-55843151 MS.gene009893:CDS 40.0%
ATTGAGAGCTAATACGTGGA+AGG + chr5.3:55842957-55842976 MS.gene009893:CDS 40.0%
CATAGCACATTGAAAGAACC+AGG - chr5.3:55842894-55842913 None:intergenic 40.0%
CGATAGTGCTTCTTATTCAC+CGG + chr5.3:55842600-55842619 MS.gene009893:CDS 40.0%
GAATCTTTGCTTTCACTTCC+TGG + chr5.3:55843462-55843481 MS.gene009893:CDS 40.0%
GATGTTAGAGGTGAATGTAG+AGG + chr5.3:55842718-55842737 MS.gene009893:CDS 40.0%
TATCTATGGAATCCATCCAC+TGG + chr5.3:55842772-55842791 MS.gene009893:CDS 40.0%
TATTTGTCTGTGAACTCCAG+TGG - chr5.3:55842791-55842810 None:intergenic 40.0%
TCTCATTGAGAGCTAATACG+TGG + chr5.3:55842953-55842972 MS.gene009893:CDS 40.0%
TGAGTCTACTGATGATTACC+TGG + chr5.3:55842873-55842892 MS.gene009893:CDS 40.0%
TGGAACTGACGATAGTGTAT+TGG + chr5.3:55843356-55843375 MS.gene009893:CDS 40.0%
TGGCTATTTAGAGGATGTCT+CGG + chr5.3:55843174-55843193 MS.gene009893:CDS 40.0%
TTCTTCTTCTTCGTTGGACA+TGG + chr5.3:55842660-55842679 MS.gene009893:CDS 40.0%
TTTGGGCAAAAGTAGTGCAT+GGG - chr5.3:55843309-55843328 None:intergenic 40.0%
! TTTTGGGCAAAAGTAGTGCA+TGG - chr5.3:55843310-55843329 None:intergenic 40.0%
!! GGTGGTTTGTTATCTCACTT+TGG + chr5.3:55842925-55842944 MS.gene009893:CDS 40.0%
!! TCATACACTCTAGGACCATT+AGG - chr5.3:55843150-55843169 None:intergenic 40.0%
AATGTGCTATGATCCGAGTG+CGG + chr5.3:55842903-55842922 MS.gene009893:CDS 45.0%
TCTTTGCTTTCACTTCCTGG+TGG + chr5.3:55843465-55843484 MS.gene009893:CDS 45.0%
! AATTCTAGGAGTGTGTGCGT+TGG - chr5.3:55842521-55842540 None:intergenic 45.0%
!! ACTCTAGGACCATTAGGCAA+AGG - chr5.3:55843144-55843163 None:intergenic 45.0%
ACGTGGAAGGAAATTGAGGG+TGG + chr5.3:55842970-55842989 MS.gene009893:CDS 50.0%
ATGTGCTATGATCCGAGTGC+GGG + chr5.3:55842904-55842923 MS.gene009893:CDS 50.0%
CCACTAGGGATCCATCATCA+TGG - chr5.3:55843431-55843450 None:intergenic 50.0%
GATAACAAACCACCCGCACT+CGG - chr5.3:55842919-55842938 None:intergenic 50.0%
TCCATCATCATGGTCCGAGT+AGG - chr5.3:55843421-55843440 None:intergenic 50.0%
TCCTACTCGGACCATGATGA+TGG + chr5.3:55843417-55843436 MS.gene009893:CDS 50.0%
TGTCTGTGAACTCCAGTGGA+TGG - chr5.3:55842787-55842806 None:intergenic 50.0%
! GCTAGAGCATCACTCCTACT+CGG + chr5.3:55843404-55843423 MS.gene009893:CDS 50.0%
!! CCATGATGATGGATCCCTAG+TGG + chr5.3:55843428-55843447 MS.gene009893:CDS 50.0%
! TCCTGGTGGTGACACTGATC+AGG + chr5.3:55843479-55843498 MS.gene009893:CDS 55.0%
! TCTAGGAGTGTGTGCGTTGG+CGG - chr5.3:55842518-55842537 None:intergenic 55.0%
GCCTGATCAGTGTCACCACC+AGG - chr5.3:55843483-55843502 None:intergenic 60.0%
TGCTATGATCCGAGTGCGGG+TGG + chr5.3:55842907-55842926 MS.gene009893:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 55842355 55843506 55842355 ID=MS.gene009893
chr5.3 mRNA 55842355 55843506 55842355 ID=MS.gene009893.t1;Parent=MS.gene009893
chr5.3 exon 55842355 55843506 55842355 ID=MS.gene009893.t1.exon1;Parent=MS.gene009893.t1
chr5.3 CDS 55842355 55843506 55842355 ID=cds.MS.gene009893.t1;Parent=MS.gene009893.t1
Gene Sequence

>MS.gene009893

ATGGATGAAGACGAAGAAGACCCATATCTACCTATTGAATTAATCATTCAAATCCTACTAAGGTTACCAGTCAAGTCTCTTATACGCTTCAAGTGTGTTTGTAAGTCTTGGTTTTCTCTCATATCTCAAAATCACTTTGCAAATTCTCATTTTCAACTTACCGCCAACGCACACACTCCTAGAATTTTGTTCATAAATCCAGATCTTGAATCTCTATCTATAGATTTAGAAGCATCTCTTAGCAACGATAGTGCTTCTTATTCACCGGACATTAATTTTTTATTTGAGGAATATGATTATGATAGTTCTTCTTCTTCGTTGGACATGGATTTTTCATCTTCTCACCCATATTTTTTAGATCTTGATGTTAGAGGTGAATGTAGAGGCTTTATACTTTTCTCCGGTTATTCAAGCCTTTATCTATGGAATCCATCCACTGGAGTTCACAGACAAATACCCTTTACTACTGTTCATGATTCCGATTTAGAAGCAAATTATTTCTATGGTTTTGGGTATGATGAGTCTACTGATGATTACCTGGTTCTTTCAATGTGCTATGATCCGAGTGCGGGTGGTTTGTTATCTCACTTTGGGCTTTTCTCATTGAGAGCTAATACGTGGAAGGAAATTGAGGGTGGTGACAATTTGCATTATTCACAGTCGTGTATGTATTCTAGAGTAGATACGCTCTTAAATGGTGTTATTCACTGGTTGGCTTTTCGTAATGATAGATCAACGAATGTTATTGTTGGATTTCATTTAACAGAAAGGAAACTTATAGAGTTGCCTTTGCCTAATGGTCCTAGAGTGTATGATTTATGGCTATTTAGAGGATGTCTCGGTCTATCTGATATGTACATTGATAATGGTATAGTTGAAATATGGGTGATGAAAAAATACAACGTGCAATCTTCTTGGACTAAGACTCTTGTTCTTTCTTTTGGTGGCATTCCCATGCACTACTTTTGCCCAAAATATTGTACAAAAAGTGATGATATCGTTGGAACTGACGATAGTGTATTGGCCAAGTATAATGATAAAGGACAGCTGCTAGAGCATCACTCCTACTCGGACCATGATGATGGATCCCTAGTGGTAATGTATACAGAATCTTTGCTTTCACTTCCTGGTGGTGACACTGATCAGGCTTAA

Protein sequence

>MS.gene009893.t1

MDEDEEDPYLPIELIIQILLRLPVKSLIRFKCVCKSWFSLISQNHFANSHFQLTANAHTPRILFINPDLESLSIDLEASLSNDSASYSPDINFLFEEYDYDSSSSSLDMDFSSSHPYFLDLDVRGECRGFILFSGYSSLYLWNPSTGVHRQIPFTTVHDSDLEANYFYGFGYDESTDDYLVLSMCYDPSAGGLLSHFGLFSLRANTWKEIEGGDNLHYSQSCMYSRVDTLLNGVIHWLAFRNDRSTNVIVGFHLTERKLIELPLPNGPRVYDLWLFRGCLGLSDMYIDNGIVEIWVMKKYNVQSSWTKTLVLSFGGIPMHYFCPKYCTKSDDIVGTDDSVLAKYNDKGQLLEHHSYSDHDDGSLVVMYTESLLSLPGGDTDQA