Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041388.t1 | XP_003609494.2 | 67.1 | 140 | 46 | 0 | 30 | 169 | 241 | 380 | 3.20E-48 | 201.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041388.t1 | G7JGN1 | 67.1 | 140 | 46 | 0 | 30 | 169 | 241 | 380 | 2.3e-48 | 201.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041388.t1 | MTR_4g116330 | 67.143 | 140 | 46 | 0 | 30 | 169 | 241 | 380 | 1.01e-61 | 195 |
MS.gene041388.t1 | MTR_4g116320 | 68.841 | 138 | 41 | 1 | 30 | 167 | 121 | 256 | 8.07e-58 | 181 |
MS.gene041388.t1 | MTR_4g116330 | 69.912 | 113 | 34 | 0 | 57 | 169 | 229 | 341 | 1.12e-50 | 166 |
MS.gene041388.t1 | MTR_3g103020 | 58.394 | 137 | 55 | 1 | 33 | 169 | 244 | 378 | 6.87e-45 | 152 |
MS.gene041388.t1 | MTR_8g040935 | 54.286 | 140 | 64 | 0 | 30 | 169 | 69 | 208 | 5.96e-44 | 144 |
MS.gene041388.t1 | MTR_4g109270 | 55.172 | 145 | 62 | 2 | 26 | 169 | 222 | 364 | 4.95e-43 | 146 |
MS.gene041388.t1 | MTR_4g109280 | 55.474 | 137 | 58 | 2 | 33 | 169 | 226 | 359 | 3.67e-42 | 144 |
MS.gene041388.t1 | MTR_4g117720 | 56.204 | 137 | 54 | 4 | 37 | 169 | 244 | 378 | 1.07e-41 | 143 |
MS.gene041388.t1 | MTR_6g060650 | 54.676 | 139 | 59 | 2 | 30 | 168 | 238 | 372 | 4.79e-40 | 139 |
MS.gene041388.t1 | MTR_3g034180 | 59.091 | 132 | 49 | 3 | 37 | 168 | 362 | 488 | 2.28e-38 | 136 |
MS.gene041388.t1 | MTR_4g117850 | 55.385 | 130 | 56 | 2 | 37 | 166 | 249 | 376 | 2.92e-38 | 134 |
MS.gene041388.t1 | MTR_4g118360 | 54.615 | 130 | 53 | 3 | 42 | 169 | 1 | 126 | 2.98e-38 | 127 |
MS.gene041388.t1 | MTR_4g117870 | 56.589 | 129 | 52 | 3 | 41 | 169 | 143 | 267 | 4.36e-38 | 131 |
MS.gene041388.t1 | MTR_4g021785 | 52.740 | 146 | 61 | 4 | 26 | 169 | 216 | 355 | 1.64e-35 | 127 |
MS.gene041388.t1 | MTR_5g023000 | 60.396 | 101 | 38 | 1 | 69 | 169 | 1 | 99 | 2.43e-34 | 116 |
MS.gene041388.t1 | MTR_8g433040 | 50.327 | 153 | 71 | 2 | 17 | 169 | 217 | 364 | 3.20e-33 | 120 |
MS.gene041388.t1 | MTR_8g032380 | 50.327 | 153 | 71 | 2 | 17 | 169 | 217 | 364 | 3.20e-33 | 120 |
MS.gene041388.t1 | MTR_4g094365 | 51.145 | 131 | 59 | 3 | 40 | 169 | 238 | 364 | 3.55e-33 | 120 |
MS.gene041388.t1 | MTR_3g034130 | 56.303 | 119 | 48 | 2 | 37 | 155 | 248 | 362 | 7.82e-33 | 120 |
MS.gene041388.t1 | MTR_4g023130 | 56.154 | 130 | 52 | 2 | 37 | 166 | 186 | 310 | 1.06e-32 | 118 |
MS.gene041388.t1 | MTR_8g433030 | 48.718 | 156 | 66 | 5 | 13 | 164 | 192 | 337 | 1.19e-32 | 119 |
MS.gene041388.t1 | MTR_3g034160 | 55.303 | 132 | 54 | 2 | 37 | 168 | 248 | 374 | 2.49e-32 | 119 |
MS.gene041388.t1 | MTR_8g032390 | 48.718 | 156 | 66 | 5 | 13 | 164 | 225 | 370 | 3.21e-32 | 118 |
MS.gene041388.t1 | MTR_4g023080 | 54.615 | 130 | 54 | 2 | 37 | 166 | 227 | 351 | 4.27e-32 | 117 |
MS.gene041388.t1 | MTR_5g070130 | 51.111 | 135 | 62 | 3 | 37 | 169 | 245 | 377 | 5.42e-32 | 118 |
MS.gene041388.t1 | MTR_5g097210 | 46.479 | 142 | 69 | 4 | 28 | 167 | 225 | 361 | 8.85e-32 | 117 |
MS.gene041388.t1 | MTR_4g117780 | 53.782 | 119 | 45 | 2 | 55 | 169 | 255 | 367 | 3.81e-31 | 115 |
MS.gene041388.t1 | MTR_4g117770 | 53.782 | 119 | 45 | 2 | 55 | 169 | 255 | 367 | 4.74e-31 | 115 |
MS.gene041388.t1 | MTR_4g117810 | 53.782 | 119 | 45 | 2 | 55 | 169 | 255 | 367 | 4.74e-31 | 115 |
MS.gene041388.t1 | MTR_4g118370 | 51.587 | 126 | 53 | 4 | 42 | 166 | 139 | 257 | 5.51e-31 | 112 |
MS.gene041388.t1 | MTR_4g023090 | 47.973 | 148 | 57 | 4 | 37 | 168 | 242 | 385 | 1.16e-30 | 114 |
MS.gene041388.t1 | MTR_4g117750 | 55.455 | 110 | 47 | 1 | 57 | 166 | 373 | 480 | 1.16e-30 | 115 |
MS.gene041388.t1 | MTR_4g117750 | 54.545 | 110 | 44 | 3 | 56 | 165 | 252 | 355 | 6.17e-29 | 111 |
MS.gene041388.t1 | MTR_5g070080 | 51.493 | 134 | 61 | 3 | 37 | 169 | 256 | 386 | 1.27e-30 | 114 |
MS.gene041388.t1 | MTR_4g023380 | 46.584 | 161 | 58 | 4 | 33 | 169 | 223 | 379 | 1.28e-30 | 114 |
MS.gene041388.t1 | MTR_1g055175 | 45.985 | 137 | 71 | 3 | 33 | 169 | 68 | 201 | 1.40e-30 | 110 |
MS.gene041388.t1 | MTR_4g023440 | 60.215 | 93 | 33 | 1 | 77 | 169 | 244 | 332 | 8.73e-30 | 111 |
MS.gene041388.t1 | MTR_4g118380 | 59.574 | 94 | 36 | 1 | 45 | 138 | 264 | 355 | 1.25e-29 | 111 |
MS.gene041388.t1 | MTR_4g023070 | 48.201 | 139 | 55 | 3 | 41 | 166 | 233 | 367 | 2.41e-29 | 110 |
MS.gene041388.t1 | MTR_1g055165 | 45.985 | 137 | 71 | 3 | 33 | 169 | 185 | 318 | 4.37e-29 | 109 |
MS.gene041388.t1 | MTR_4g117530 | 52.941 | 102 | 43 | 1 | 68 | 169 | 157 | 253 | 6.47e-29 | 107 |
MS.gene041388.t1 | MTR_4g023120 | 47.482 | 139 | 56 | 3 | 41 | 166 | 233 | 367 | 8.91e-29 | 109 |
MS.gene041388.t1 | MTR_6g463430 | 48.855 | 131 | 59 | 3 | 37 | 166 | 76 | 199 | 1.39e-28 | 105 |
MS.gene041388.t1 | MTR_1g055195 | 46.667 | 135 | 64 | 4 | 37 | 169 | 350 | 478 | 4.91e-28 | 108 |
MS.gene041388.t1 | MTR_4g114700 | 52.066 | 121 | 53 | 4 | 44 | 160 | 99 | 218 | 8.86e-28 | 103 |
MS.gene041388.t1 | MTR_4g122860 | 45.736 | 129 | 61 | 3 | 45 | 169 | 197 | 320 | 1.65e-27 | 105 |
MS.gene041388.t1 | MTR_4g122850 | 47.794 | 136 | 63 | 6 | 37 | 169 | 234 | 364 | 2.12e-27 | 105 |
MS.gene041388.t1 | MTR_4g118400 | 59.091 | 88 | 34 | 1 | 76 | 163 | 209 | 294 | 6.04e-27 | 103 |
MS.gene041388.t1 | MTR_1g055135 | 42.466 | 146 | 74 | 5 | 30 | 169 | 234 | 375 | 6.52e-27 | 104 |
MS.gene041388.t1 | MTR_4g023190 | 47.183 | 142 | 65 | 5 | 30 | 166 | 220 | 356 | 2.14e-26 | 102 |
MS.gene041388.t1 | MTR_8g102520 | 43.046 | 151 | 78 | 5 | 22 | 169 | 177 | 322 | 1.47e-25 | 100 |
MS.gene041388.t1 | MTR_4g023150 | 45.775 | 142 | 67 | 5 | 30 | 166 | 221 | 357 | 3.33e-25 | 99.8 |
MS.gene041388.t1 | MTR_5g070088 | 44.275 | 131 | 70 | 2 | 37 | 166 | 254 | 382 | 3.42e-25 | 100 |
MS.gene041388.t1 | MTR_7g079450 | 50.000 | 114 | 52 | 3 | 56 | 169 | 29 | 137 | 5.46e-25 | 94.0 |
MS.gene041388.t1 | MTR_4g121580 | 48.780 | 123 | 49 | 5 | 38 | 159 | 230 | 339 | 1.58e-24 | 98.2 |
MS.gene041388.t1 | MTR_4g023200 | 45.775 | 142 | 67 | 5 | 30 | 166 | 221 | 357 | 2.08e-24 | 97.4 |
MS.gene041388.t1 | MTR_1g055250 | 39.568 | 139 | 79 | 3 | 26 | 162 | 128 | 263 | 8.31e-23 | 92.8 |
MS.gene041388.t1 | MTR_7g079400 | 43.704 | 135 | 65 | 5 | 41 | 169 | 208 | 337 | 5.25e-22 | 90.9 |
MS.gene041388.t1 | MTR_4g023430 | 45.192 | 104 | 56 | 1 | 67 | 169 | 119 | 222 | 1.19e-21 | 87.8 |
MS.gene041388.t1 | MTR_7g117720 | 40.260 | 154 | 67 | 5 | 31 | 164 | 124 | 272 | 2.14e-20 | 85.5 |
MS.gene041388.t1 | MTR_7g079370 | 47.222 | 108 | 52 | 3 | 56 | 163 | 248 | 350 | 1.59e-19 | 84.3 |
MS.gene041388.t1 | MTR_8g013005 | 63.934 | 61 | 20 | 1 | 109 | 169 | 1 | 59 | 4.90e-19 | 76.6 |
MS.gene041388.t1 | MTR_7g079420 | 40.299 | 134 | 68 | 6 | 41 | 169 | 1018 | 1144 | 1.02e-17 | 80.1 |
MS.gene041388.t1 | MTR_4g122840 | 41.221 | 131 | 39 | 4 | 40 | 169 | 171 | 264 | 1.30e-16 | 75.1 |
MS.gene041388.t1 | MTR_8g098830 | 41.379 | 116 | 58 | 6 | 25 | 136 | 85 | 194 | 2.25e-15 | 71.2 |
MS.gene041388.t1 | MTR_4g023100 | 58.621 | 58 | 20 | 1 | 111 | 168 | 65 | 118 | 6.85e-14 | 65.1 |
MS.gene041388.t1 | MTR_4g109290 | 61.818 | 55 | 19 | 1 | 115 | 169 | 136 | 188 | 9.86e-13 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 36 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTAGAGCATGACTTATTT+TGG | 0.118608 | 8.2:+12776746 | MS.gene041388:CDS |
GCTCTTGTTCTTCCTGCTTA+TGG | 0.218116 | 8.2:+12776619 | MS.gene041388:CDS |
TTAATAGCAGAGCTGAAATA+TGG | 0.265866 | 8.2:+12776557 | MS.gene041388:CDS |
TTCGAGAATCTCTTAGTCTA+TGG | 0.273308 | 8.2:+12776521 | MS.gene041388:CDS |
ACCATCAAATCACAATATTC+AGG | 0.337237 | 8.2:-12776496 | None:intergenic |
ATTGCAACAAATGGTGAAAC+TGG | 0.353425 | 8.2:+12776694 | MS.gene041388:CDS |
ACCTGAATATTGTGATTTGA+TGG | 0.382722 | 8.2:+12776495 | MS.gene041388:CDS |
TTGTCATACCATTGCTTGAT+TGG | 0.394009 | 8.2:+12775580 | MS.gene041388:CDS |
AGTGCATTCGTCTTGGACTA+AGG | 0.432723 | 8.2:+12776597 | MS.gene041388:CDS |
GGTTCAAGTTCAAAACCATC+TGG | 0.434669 | 8.2:-12776475 | None:intergenic |
ACTTGAGATCCCATTGGAAA+TGG | 0.436798 | 8.2:-12776775 | None:intergenic |
GTCAATCTCTGAAACCGGAT+TGG | 0.443562 | 8.2:-12775710 | None:intergenic |
TCAATCTCTGAAACCGGATT+GGG | 0.443641 | 8.2:-12775709 | None:intergenic |
ATCTTGTCAATCTCTGAAAC+CGG | 0.452826 | 8.2:-12775715 | None:intergenic |
AGCCCCTTTGGATCCCAATC+CGG | 0.453365 | 8.2:+12775696 | MS.gene041388:intron |
ATCTCTTAGTCTATGGGCTA+TGG | 0.479127 | 8.2:+12776528 | MS.gene041388:CDS |
TAAGAAGGTTTGCCATAAGC+AGG | 0.489268 | 8.2:-12776631 | None:intergenic |
AATACAAAGTGCATTCGTCT+TGG | 0.497447 | 8.2:+12776590 | MS.gene041388:CDS |
AGTTCAAAACCATCTGGAAA+AGG | 0.498145 | 8.2:-12776469 | None:intergenic |
TCGAGAATCTCTTAGTCTAT+GGG | 0.505807 | 8.2:+12776522 | MS.gene041388:CDS |
GAGTCTCTGCTCTCACTCCC+TGG | 0.514393 | 8.2:+12776811 | MS.gene041388:CDS |
TTGGGACGGTCCATTTCCAA+TGG | 0.517083 | 8.2:+12776765 | MS.gene041388:CDS |
TAATAGCAGAGCTGAAATAT+GGG | 0.518359 | 8.2:+12776558 | MS.gene041388:CDS |
GGTGACATTATTGCAACAAA+TGG | 0.525830 | 8.2:+12776685 | MS.gene041388:CDS |
TGGGACGGTCCATTTCCAAT+GGG | 0.531153 | 8.2:+12776766 | MS.gene041388:CDS |
AAACCGGATTGGGATCCAAA+GGG | 0.538419 | 8.2:-12775699 | None:intergenic |
TAGGCTTGCACATTATCACC+AGG | 0.541081 | 8.2:-12776829 | None:intergenic |
GAAACCGGATTGGGATCCAA+AGG | 0.594056 | 8.2:-12775700 | None:intergenic |
ATTTCCAATGGGATCTCAAG+TGG | 0.609221 | 8.2:+12776777 | MS.gene041388:CDS |
ACGGCCACTTGAGATCCCAT+TGG | 0.616312 | 8.2:-12776781 | None:intergenic |
AATACTCACCAATCAAGCAA+TGG | 0.628770 | 8.2:-12775588 | None:intergenic |
GAGCAGAGACTCTATATACA+CGG | 0.665346 | 8.2:-12776800 | None:intergenic |
TTGTTGAAGTATAATGACAA+AGG | 0.680872 | 8.2:+12776718 | MS.gene041388:CDS |
AACCGGATTGGGATCCAAAG+GGG | 0.683868 | 8.2:-12775698 | None:intergenic |
AGGCTTGCACATTATCACCA+GGG | 0.695078 | 8.2:-12776828 | None:intergenic |
AATGGACATCAATAACGTCG+AGG | 0.726352 | 8.2:+12775552 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTGTTCAACATTTTTT+TGG | + | chr8.2:12776173-12776192 | MS.gene041388:intron | 15.0% |
!! | ACCTAAAAAGAATTAAAAAG+AGG | - | chr8.2:12776005-12776024 | None:intergenic | 20.0% |
!! | ATCTAATATCTTATAAGCTA+AGG | - | chr8.2:12776289-12776308 | None:intergenic | 20.0% |
!! | ATGTTGAACAAAAATTAAAG+AGG | - | chr8.2:12776168-12776187 | None:intergenic | 20.0% |
!! | TATTAAGTATAAGACTTACA+TGG | + | chr8.2:12775753-12775772 | MS.gene041388:intron | 20.0% |
!! | TGTTGAACAAAAATTAAAGA+GGG | - | chr8.2:12776167-12776186 | None:intergenic | 20.0% |
!! | TTATAGATGGTAGATATATA+TGG | + | chr8.2:12776366-12776385 | MS.gene041388:intron | 20.0% |
!!! | ATATATCGATTCATTATAGA+TGG | + | chr8.2:12776353-12776372 | MS.gene041388:intron | 20.0% |
!!! | TTAATTCTTTTTAGGTTCAT+TGG | + | chr8.2:12776009-12776028 | MS.gene041388:intron | 20.0% |
! | ACATTGAACAAAAATTGAAG+AGG | - | chr8.2:12776232-12776251 | None:intergenic | 25.0% |
! | ATGTTTCAATTGTGTTATGA+TGG | + | chr8.2:12775945-12775964 | MS.gene041388:intron | 25.0% |
! | CATTGAACAAAAATTGAAGA+GGG | - | chr8.2:12776231-12776250 | None:intergenic | 25.0% |
! | TATTATTGCCTTTGATGTAA+TGG | + | chr8.2:12776426-12776445 | MS.gene041388:intron | 25.0% |
! | TTGTTGAAGTATAATGACAA+AGG | + | chr8.2:12776718-12776737 | MS.gene041388:CDS | 25.0% |
!!! | GCCTCTTTTTAATTCTTTTT+AGG | + | chr8.2:12776001-12776020 | MS.gene041388:intron | 25.0% |
AAAACGAAAACTGATTGCAA+AGG | - | chr8.2:12775647-12775666 | None:intergenic | 30.0% | |
AAGGACATATACGTAATGTA+AGG | - | chr8.2:12776270-12776289 | None:intergenic | 30.0% | |
ACCATCAAATCACAATATTC+AGG | - | chr8.2:12776499-12776518 | None:intergenic | 30.0% | |
ACCTGAATATTGTGATTTGA+TGG | + | chr8.2:12776495-12776514 | MS.gene041388:CDS | 30.0% | |
ATAGGGAAAAAGTAGTAAGA+AGG | - | chr8.2:12776649-12776668 | None:intergenic | 30.0% | |
ATTACGTACCTGAATTCATA+AGG | + | chr8.2:12775885-12775904 | MS.gene041388:intron | 30.0% | |
GTTAGAAAATGAAACCTCAA+TGG | - | chr8.2:12775925-12775944 | None:intergenic | 30.0% | |
TAAGTATAAGACTTACATGG+TGG | + | chr8.2:12775756-12775775 | MS.gene041388:intron | 30.0% | |
TAATAGCAGAGCTGAAATAT+GGG | + | chr8.2:12776558-12776577 | MS.gene041388:CDS | 30.0% | |
TCTGTATACATCATCTTTGT+TGG | + | chr8.2:12776040-12776059 | MS.gene041388:intron | 30.0% | |
TGAACATACCTTATGAATTC+AGG | - | chr8.2:12775896-12775915 | None:intergenic | 30.0% | |
TTAATAGCAGAGCTGAAATA+TGG | + | chr8.2:12776557-12776576 | MS.gene041388:CDS | 30.0% | |
TTTCCTTTCCATTACATCAA+AGG | - | chr8.2:12776437-12776456 | None:intergenic | 30.0% | |
!! | CACTTTTTGTAGAGCATATA+GGG | - | chr8.2:12776666-12776685 | None:intergenic | 30.0% |
!! | TCTAGAGCATGACTTATTTT+GGG | + | chr8.2:12776747-12776766 | MS.gene041388:CDS | 30.0% |
!!! | TTCTAGAGCATGACTTATTT+TGG | + | chr8.2:12776746-12776765 | MS.gene041388:CDS | 30.0% |
!!! | TTCTTTTTAGGTTCATTGGA+AGG | + | chr8.2:12776013-12776032 | MS.gene041388:intron | 30.0% |
AATACAAAGTGCATTCGTCT+TGG | + | chr8.2:12776590-12776609 | MS.gene041388:CDS | 35.0% | |
AATACTCACCAATCAAGCAA+TGG | - | chr8.2:12775591-12775610 | None:intergenic | 35.0% | |
AGTTCAAAACCATCTGGAAA+AGG | - | chr8.2:12776472-12776491 | None:intergenic | 35.0% | |
ATACATCATCTTTGTTGGCA+AGG | + | chr8.2:12776045-12776064 | MS.gene041388:intron | 35.0% | |
ATTGCAACAAATGGTGAAAC+TGG | + | chr8.2:12776694-12776713 | MS.gene041388:CDS | 35.0% | |
CACTGTGTATGCAAAAATAC+AGG | - | chr8.2:12775823-12775842 | None:intergenic | 35.0% | |
CCTATATGCTCTACAAAAAG+TGG | + | chr8.2:12776664-12776683 | MS.gene041388:CDS | 35.0% | |
GAGTTTAACGTTGAACATGT+GGG | + | chr8.2:12775778-12775797 | MS.gene041388:intron | 35.0% | |
GGAGTAACACAGATACATAT+AGG | - | chr8.2:12775626-12775645 | None:intergenic | 35.0% | |
GGTGACATTATTGCAACAAA+TGG | + | chr8.2:12776685-12776704 | MS.gene041388:CDS | 35.0% | |
TATGTTCAAGTGTACCATTG+AGG | + | chr8.2:12775908-12775927 | MS.gene041388:intron | 35.0% | |
TCGAGAATCTCTTAGTCTAT+GGG | + | chr8.2:12776522-12776541 | MS.gene041388:CDS | 35.0% | |
TTCGAGAATCTCTTAGTCTA+TGG | + | chr8.2:12776521-12776540 | MS.gene041388:CDS | 35.0% | |
TTGTCATACCATTGCTTGAT+TGG | + | chr8.2:12775580-12775599 | MS.gene041388:CDS | 35.0% | |
! | TCAGTTTTCGTTTTCTGACT+CGG | + | chr8.2:12775653-12775672 | MS.gene041388:intron | 35.0% |
! | TTGCCTTTGATGTAATGGAA+AGG | + | chr8.2:12776431-12776450 | MS.gene041388:intron | 35.0% |
!! | ATCTTGTCAATCTCTGAAAC+CGG | - | chr8.2:12775718-12775737 | None:intergenic | 35.0% |
!!! | CCACTTTTTGTAGAGCATAT+AGG | - | chr8.2:12776667-12776686 | None:intergenic | 35.0% |
ACTTGAGATCCCATTGGAAA+TGG | - | chr8.2:12776778-12776797 | None:intergenic | 40.0% | |
ATTTCCAATGGGATCTCAAG+TGG | + | chr8.2:12776777-12776796 | MS.gene041388:CDS | 40.0% | |
GAGCAGAGACTCTATATACA+CGG | - | chr8.2:12776803-12776822 | None:intergenic | 40.0% | |
GGAGTTTAACGTTGAACATG+TGG | + | chr8.2:12775777-12775796 | MS.gene041388:intron | 40.0% | |
TAAGAAGGTTTGCCATAAGC+AGG | - | chr8.2:12776634-12776653 | None:intergenic | 40.0% | |
! | ATCTCTTAGTCTATGGGCTA+TGG | + | chr8.2:12776528-12776547 | MS.gene041388:CDS | 40.0% |
! | GGTTCAAGTTCAAAACCATC+TGG | - | chr8.2:12776478-12776497 | None:intergenic | 40.0% |
!! | TCAATCTCTGAAACCGGATT+GGG | - | chr8.2:12775712-12775731 | None:intergenic | 40.0% |
!!! | GAGCATGACTTATTTTGGGA+CGG | + | chr8.2:12776751-12776770 | MS.gene041388:CDS | 40.0% |
AGGCTTGCACATTATCACCA+GGG | - | chr8.2:12776831-12776850 | None:intergenic | 45.0% | |
AGTGCATTCGTCTTGGACTA+AGG | + | chr8.2:12776597-12776616 | MS.gene041388:CDS | 45.0% | |
CATGTAGTGCTGTCTTTCCA+TGG | - | chr8.2:12775851-12775870 | None:intergenic | 45.0% | |
GCATACACAGTGATCAACCA+TGG | + | chr8.2:12775831-12775850 | MS.gene041388:intron | 45.0% | |
GCTCTTGTTCTTCCTGCTTA+TGG | + | chr8.2:12776619-12776638 | MS.gene041388:CDS | 45.0% | |
GTAGATATATATGGCCCGTG+CGG | + | chr8.2:12776375-12776394 | MS.gene041388:intron | 45.0% | |
TAGGCTTGCACATTATCACC+AGG | - | chr8.2:12776832-12776851 | None:intergenic | 45.0% | |
! | AAACCGGATTGGGATCCAAA+GGG | - | chr8.2:12775702-12775721 | None:intergenic | 45.0% |
! | GTAGAGATGCCTTTTCCAGA+TGG | + | chr8.2:12776460-12776479 | MS.gene041388:CDS | 45.0% |
!! | GTCAATCTCTGAAACCGGAT+TGG | - | chr8.2:12775713-12775732 | None:intergenic | 45.0% |
TGGGACGGTCCATTTCCAAT+GGG | + | chr8.2:12776766-12776785 | MS.gene041388:CDS | 50.0% | |
TTGGGACGGTCCATTTCCAA+TGG | + | chr8.2:12776765-12776784 | MS.gene041388:CDS | 50.0% | |
! | AACCGGATTGGGATCCAAAG+GGG | - | chr8.2:12775701-12775720 | None:intergenic | 50.0% |
! | CTTTTGTGTACCAGCCCCTT+TGG | + | chr8.2:12775684-12775703 | MS.gene041388:intron | 50.0% |
! | GAAACCGGATTGGGATCCAA+AGG | - | chr8.2:12775703-12775722 | None:intergenic | 50.0% |
ACGGCCACTTGAGATCCCAT+TGG | - | chr8.2:12776784-12776803 | None:intergenic | 55.0% | |
AGCACGGGTAGACGATCTAG+TGG | + | chr8.2:12776399-12776418 | MS.gene041388:intron | 55.0% | |
AGCCCCTTTGGATCCCAATC+CGG | + | chr8.2:12775696-12775715 | MS.gene041388:intron | 55.0% | |
ATATGGCCCGTGCGGTAGCA+CGG | + | chr8.2:12776383-12776402 | MS.gene041388:intron | 60.0% | |
GAGTCTCTGCTCTCACTCCC+TGG | + | chr8.2:12776811-12776830 | MS.gene041388:CDS | 60.0% | |
GGATTGGGATCCAAAGGGGC+TGG | - | chr8.2:12775697-12775716 | None:intergenic | 60.0% | |
CGTCTACCCGTGCTACCGCA+CGG | - | chr8.2:12776393-12776412 | None:intergenic | 65.0% | |
GTCTACCCGTGCTACCGCAC+GGG | - | chr8.2:12776392-12776411 | None:intergenic | 65.0% | |
TATGGCCCGTGCGGTAGCAC+GGG | + | chr8.2:12776384-12776403 | MS.gene041388:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 12775553 | 12776852 | 12775553 | ID=MS.gene041388 |
chr8.2 | mRNA | 12775553 | 12776852 | 12775553 | ID=MS.gene041388.t1;Parent=MS.gene041388 |
chr8.2 | exon | 12775553 | 12775601 | 12775553 | ID=MS.gene041388.t1.exon1;Parent=MS.gene041388.t1 |
chr8.2 | CDS | 12775553 | 12775601 | 12775553 | ID=cds.MS.gene041388.t1;Parent=MS.gene041388.t1 |
chr8.2 | exon | 12775698 | 12775758 | 12775698 | ID=MS.gene041388.t1.exon2;Parent=MS.gene041388.t1 |
chr8.2 | CDS | 12775698 | 12775758 | 12775698 | ID=cds.MS.gene041388.t1;Parent=MS.gene041388.t1 |
chr8.2 | exon | 12776453 | 12776852 | 12776453 | ID=MS.gene041388.t1.exon3;Parent=MS.gene041388.t1 |
chr8.2 | CDS | 12776453 | 12776852 | 12776453 | ID=cds.MS.gene041388.t1;Parent=MS.gene041388.t1 |
Gene Sequence |
Protein sequence |