AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84698

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84698.t1 MTR_2g024110 53.409 264 99 7 1 242 1 262 5.27e-82 250
MS.gene84698.t1 MTR_5g083940 66.990 206 38 5 1 206 1 176 1.91e-79 242
MS.gene84698.t1 MTR_2g028110 50.735 272 103 8 1 242 1 271 3.60e-76 235
MS.gene84698.t1 MTR_2g031680 53.435 262 98 6 4 242 6 266 5.00e-75 233
MS.gene84698.t1 MTR_1g068875 50.936 267 103 8 1 242 1 264 5.85e-75 232
MS.gene84698.t1 MTR_2g031640 53.008 266 97 8 4 242 6 270 3.20e-74 231
MS.gene84698.t1 MTR_2g031720 51.471 272 101 9 1 242 1 271 4.10e-73 228
MS.gene84698.t1 MTR_2g031700 54.585 229 88 4 4 217 6 233 1.56e-71 221
MS.gene84698.t1 MTR_4g006270 51.938 258 87 8 1 239 1 240 1.58e-71 224
MS.gene84698.t1 MTR_1g068835 48.689 267 110 8 1 242 1 265 6.26e-70 219
MS.gene84698.t1 MTR_1g068860 49.814 269 106 8 1 242 1 267 7.51e-70 219
MS.gene84698.t1 MTR_2g026010 50.916 273 101 8 1 242 1 271 9.51e-70 219
MS.gene84698.t1 MTR_2g028130 47.203 286 103 8 2 240 3 287 2.17e-69 219
MS.gene84698.t1 MTR_0667s0010 47.101 276 108 8 4 242 6 280 3.87e-68 216
MS.gene84698.t1 MTR_3g086970 63.158 190 49 4 1 189 1 170 5.99e-68 207
MS.gene84698.t1 MTR_2g426090 47.292 277 104 8 7 242 9 284 3.60e-67 213
MS.gene84698.t1 MTR_2g425980 45.965 285 109 10 2 242 3 286 6.24e-65 207
MS.gene84698.t1 MTR_2g021050 48.669 263 107 9 2 242 3 259 2.05e-64 205
MS.gene84698.t1 MTR_8g099460 47.426 272 107 10 3 240 4 273 6.23e-64 204
MS.gene84698.t1 MTR_2g426060 45.775 284 108 12 4 242 6 288 2.85e-62 201
MS.gene84698.t1 MTR_2g025420 43.151 292 112 10 4 242 6 296 5.74e-61 197
MS.gene84698.t1 MTR_2g426020 43.165 278 117 8 4 242 6 281 4.09e-60 195
MS.gene84698.t1 MTR_2g024100 46.591 264 100 9 19 242 22 284 1.88e-59 193
MS.gene84698.t1 MTR_3g083010 43.771 297 109 11 1 242 1 294 5.32e-59 192
MS.gene84698.t1 MTR_2g426070 44.251 287 109 11 2 240 3 286 2.95e-57 187
MS.gene84698.t1 MTR_2g028140 42.268 291 114 10 2 239 3 292 6.92e-56 184
MS.gene84698.t1 MTR_2g028160 40.972 288 120 8 2 240 3 289 1.32e-55 184
MS.gene84698.t1 MTR_1g068905 45.643 241 94 7 1 222 1 223 2.84e-54 177
MS.gene84698.t1 MTR_4g070550 41.608 286 119 10 2 240 3 287 8.75e-53 176
MS.gene84698.t1 MTR_4g133170 38.433 268 142 6 1 246 1 267 1.05e-52 175
MS.gene84698.t1 MTR_2g022170 68.595 121 34 2 1 117 1 121 3.74e-51 163
MS.gene84698.t1 MTR_2g025960 42.105 190 75 7 85 242 3 189 1.04e-34 126
MS.gene84698.t1 MTR_2g040050 42.289 201 72 8 64 242 15 193 6.56e-34 122
MS.gene84698.t1 MTR_7g110360 45.833 168 64 4 1 141 36 203 9.92e-32 119
MS.gene84698.t1 MTR_3g014540 25.564 266 172 7 4 243 29 294 5.24e-25 102
MS.gene84698.t1 MTR_4g061340 29.630 270 148 12 4 237 26 289 4.17e-24 99.8
MS.gene84698.t1 MTR_4g031770 27.863 262 165 9 1 239 1 261 1.50e-23 97.8
MS.gene84698.t1 MTR_2g021155 27.586 261 161 9 7 242 39 296 2.57e-23 99.0
MS.gene84698.t1 MTR_3g014570 25.564 266 172 7 4 243 29 294 9.91e-22 93.2
MS.gene84698.t1 MTR_3g007330 28.244 262 156 9 4 239 48 303 1.01e-21 93.2
MS.gene84698.t1 MTR_2g021190 27.925 265 157 12 4 239 21 280 1.96e-21 92.0
MS.gene84698.t1 MTR_6g065980 25.969 258 162 8 4 243 16 262 3.29e-21 91.3
MS.gene84698.t1 MTR_3g013770 26.022 269 166 10 4 240 33 300 7.52e-21 90.5
MS.gene84698.t1 MTR_3g006670 28.571 266 158 10 4 239 49 312 2.36e-20 89.4
MS.gene84698.t1 MTR_2g021150 27.925 265 159 11 4 239 14 275 3.03e-20 89.0
MS.gene84698.t1 MTR_3g009240 27.969 261 159 12 4 239 36 292 3.39e-20 89.0
MS.gene84698.t1 MTR_2g029990 26.515 264 160 12 5 239 52 310 3.81e-19 85.9
MS.gene84698.t1 MTR_2g046900 26.545 275 167 10 4 247 28 298 4.57e-19 85.5
MS.gene84698.t1 MTR_3g007360 28.333 240 145 9 7 220 55 293 6.58e-19 85.1
MS.gene84698.t1 MTR_3g034180 25.818 275 169 11 4 244 123 396 1.10e-18 85.1
MS.gene84698.t1 MTR_3g007410 27.917 240 146 9 7 220 55 293 1.46e-18 84.3
MS.gene84698.t1 MTR_5g011200 25.091 275 165 9 4 245 17 283 1.58e-18 84.0
MS.gene84698.t1 MTR_0760s0010 28.854 253 146 11 10 239 53 294 2.15e-18 83.6
MS.gene84698.t1 MTR_3g010390 27.174 276 158 9 4 240 33 304 2.43e-18 83.6
MS.gene84698.t1 MTR_0044s0300 24.907 269 154 9 4 239 38 291 3.08e-18 83.2
MS.gene84698.t1 MTR_3g007430 26.360 239 150 7 7 220 46 283 3.78e-18 83.2
MS.gene84698.t1 MTR_7g017130 28.014 282 130 13 3 225 17 284 6.47e-18 82.4
MS.gene84698.t1 MTR_7g017170 28.014 282 130 13 3 225 17 284 7.70e-18 82.4
MS.gene84698.t1 MTR_2g078900 26.996 263 155 13 4 239 33 285 8.26e-18 81.6
MS.gene84698.t1 MTR_3g013740 25.899 278 163 11 4 240 44 319 9.47e-18 82.0
MS.gene84698.t1 MTR_3g036290 27.519 258 154 11 4 239 22 268 1.08e-17 81.6
MS.gene84698.t1 MTR_2g046830 27.509 269 158 10 7 247 28 287 1.29e-17 81.6
MS.gene84698.t1 MTR_8g467140 24.521 261 169 8 4 240 32 288 1.90e-17 80.5
MS.gene84698.t1 MTR_7g013590 26.820 261 160 11 7 239 39 296 3.62e-17 80.5
MS.gene84698.t1 MTR_1g056710 26.800 250 149 10 1 222 31 274 4.17e-17 80.1
MS.gene84698.t1 MTR_3g036430 25.600 250 154 7 1 239 17 245 4.38e-17 79.7
MS.gene84698.t1 MTR_1g054725 25.818 275 171 12 1 245 17 288 4.85e-17 79.7
MS.gene84698.t1 MTR_1g055070 27.027 259 149 10 1 220 46 303 8.12e-17 79.3
MS.gene84698.t1 MTR_1g097560 26.515 264 155 12 2 240 34 283 1.44e-16 78.6
MS.gene84698.t1 MTR_5g046300 23.954 263 168 10 1 239 1 255 1.45e-16 78.2
MS.gene84698.t1 MTR_5g046290 23.954 263 168 10 1 239 1 255 1.45e-16 78.2
MS.gene84698.t1 MTR_2g046920 26.259 278 156 12 4 247 24 286 1.69e-16 78.2
MS.gene84698.t1 MTR_2g047832 24.579 297 157 10 4 247 29 311 1.75e-16 78.6
MS.gene84698.t1 MTR_2g055970 24.903 257 173 7 4 240 211 467 1.82e-16 78.6
MS.gene84698.t1 MTR_1g094210 27.407 270 142 12 4 239 57 306 1.87e-16 78.2
MS.gene84698.t1 MTR_1g094210 27.407 270 142 12 4 239 57 306 2.07e-16 78.2
MS.gene84698.t1 MTR_3g006570 25.660 265 166 9 4 242 21 280 2.96e-16 77.4
MS.gene84698.t1 MTR_8g101580 27.170 265 161 13 1 239 42 300 3.01e-16 77.8
MS.gene84698.t1 MTR_2g437190 48.980 98 43 3 46 136 56 153 3.48e-16 74.3
MS.gene84698.t1 MTR_1g097330 27.311 238 150 10 4 223 16 248 3.66e-16 77.4
MS.gene84698.t1 MTR_3g103020 26.984 252 136 8 4 221 20 257 4.05e-16 77.0
MS.gene84698.t1 MTR_1g088120 27.682 289 150 12 7 240 13 297 5.45e-16 77.0
MS.gene84698.t1 MTR_3g034160 24.324 259 162 9 4 229 9 266 6.16e-16 76.6
MS.gene84698.t1 MTR_5g022420 28.511 235 142 8 4 221 27 252 6.69e-16 76.6
MS.gene84698.t1 MTR_4g023120 27.309 249 152 8 3 227 2 245 7.21e-16 76.3
MS.gene84698.t1 MTR_4g055060 25.275 273 169 11 4 242 30 301 7.75e-16 76.3
MS.gene84698.t1 MTR_1g054575 25.468 267 170 10 4 248 52 311 8.37e-16 76.6
MS.gene84698.t1 MTR_4g107820 25.197 254 138 8 2 221 34 269 1.09e-15 75.9
MS.gene84698.t1 MTR_4g107780 25.197 254 138 8 2 221 34 269 1.09e-15 75.9
MS.gene84698.t1 MTR_4g107820 25.197 254 138 8 2 221 34 269 1.15e-15 75.9
MS.gene84698.t1 MTR_3g011060 22.826 276 169 8 4 239 28 299 1.36e-15 75.9
MS.gene84698.t1 MTR_4g107780 25.197 254 138 8 2 221 34 269 1.45e-15 75.9
MS.gene84698.t1 MTR_5g007610 24.621 264 166 6 4 234 41 304 1.76e-15 75.5
MS.gene84698.t1 MTR_1g442850 27.483 302 147 13 1 248 2 285 1.79e-15 75.1
MS.gene84698.t1 MTR_6g053260 25.271 277 155 11 1 239 334 596 1.83e-15 75.9
MS.gene84698.t1 MTR_1g055375 24.638 276 175 11 1 245 1 274 2.35e-15 74.7
MS.gene84698.t1 MTR_7g077990 26.923 286 146 14 4 240 17 288 2.88e-15 74.7
MS.gene84698.t1 MTR_3g024040 26.459 257 163 11 10 248 37 285 3.13e-15 74.7
MS.gene84698.t1 MTR_4g023080 25.210 238 146 8 4 220 9 235 4.18e-15 73.9
MS.gene84698.t1 MTR_4g116330 28.862 246 136 10 4 221 23 257 4.19e-15 74.3
MS.gene84698.t1 MTR_3g086960 92.105 38 3 0 203 240 9 46 4.23e-15 70.9
MS.gene84698.t1 MTR_4g023070 26.236 263 162 8 3 242 2 255 4.97e-15 73.9
MS.gene84698.t1 MTR_4g019990 25.597 293 166 14 4 247 6 295 5.14e-15 73.9
MS.gene84698.t1 MTR_2g021210 27.652 264 160 10 4 245 84 338 6.59e-15 73.9
MS.gene84698.t1 MTR_8g013010 26.971 241 134 9 4 212 54 284 7.47e-15 73.2
MS.gene84698.t1 MTR_1g055135 27.092 251 153 11 4 228 13 259 1.03e-14 73.2
MS.gene84698.t1 MTR_3g006530 24.818 274 158 12 4 240 40 302 1.03e-14 73.2
MS.gene84698.t1 MTR_3g058440 25.641 273 156 11 1 232 32 298 1.20e-14 72.4
MS.gene84698.t1 MTR_4g108820 24.454 229 139 9 4 223 42 245 1.20e-14 72.4
MS.gene84698.t1 MTR_4g094365 26.007 273 165 10 4 247 8 272 1.63e-14 72.4
MS.gene84698.t1 MTR_4g023090 24.900 249 141 8 4 220 16 250 1.79e-14 72.4
MS.gene84698.t1 MTR_3g007300 27.273 231 136 10 1 219 46 256 1.86e-14 72.4
MS.gene84698.t1 MTR_3g011100 25.912 274 164 10 4 242 235 504 1.89e-14 72.8
MS.gene84698.t1 MTR_2g047892 24.832 298 155 10 4 247 22 304 1.99e-14 72.4
MS.gene84698.t1 MTR_3g007270 23.913 276 167 9 4 239 47 319 2.19e-14 72.4
MS.gene84698.t1 MTR_1g097490 27.799 259 158 10 4 239 49 301 2.20e-14 72.0
MS.gene84698.t1 MTR_6g004660 25.632 277 165 9 4 242 16 289 2.52e-14 72.0
MS.gene84698.t1 MTR_7g070440 25.410 244 153 9 4 220 7 248 2.76e-14 72.0
MS.gene84698.t1 MTR_5g057710 23.985 271 159 9 4 238 46 305 3.22e-14 71.6
MS.gene84698.t1 MTR_3g058470 28.713 202 107 8 1 168 34 232 3.42e-14 71.6
MS.gene84698.t1 MTR_5g096710 28.352 261 137 12 4 221 23 276 3.47e-14 71.6
MS.gene84698.t1 MTR_4g102410 26.022 269 146 11 4 220 61 328 3.66e-14 71.6
MS.gene84698.t1 MTR_3g009310 24.254 268 164 8 4 239 42 302 3.73e-14 71.6
MS.gene84698.t1 MTR_2g461450 24.815 270 172 10 1 248 15 275 4.27e-14 71.2
MS.gene84698.t1 MTR_3g034130 24.088 274 173 12 4 243 9 281 4.44e-14 71.2
MS.gene84698.t1 MTR_3g010590 24.904 261 154 12 4 239 39 282 5.19e-14 71.2
MS.gene84698.t1 MTR_7g061060 24.242 297 158 9 4 248 13 294 6.68e-14 70.9
MS.gene84698.t1 MTR_7g056570 29.592 294 139 13 4 248 18 292 7.70e-14 70.9
MS.gene84698.t1 MTR_3g058480 27.917 240 126 10 1 197 36 271 8.54e-14 70.1
MS.gene84698.t1 MTR_7g079160 26.480 321 138 15 7 240 11 320 9.45e-14 70.5
MS.gene84698.t1 MTR_4g030830 26.056 284 159 12 2 238 7 286 9.99e-14 70.5
MS.gene84698.t1 MTR_6g007135 24.898 245 150 9 7 220 29 270 1.08e-13 70.1
MS.gene84698.t1 MTR_8g073550 28.571 189 109 7 4 169 30 215 1.12e-13 68.6
MS.gene84698.t1 MTR_4g122850 27.160 243 131 12 15 221 12 244 1.14e-13 70.1
MS.gene84698.t1 MTR_4g023440 30.233 215 116 11 4 193 18 223 1.51e-13 69.3
MS.gene84698.t1 MTR_2g078850 22.692 260 175 10 7 243 33 289 1.77e-13 69.3
MS.gene84698.t1 MTR_3g009300 27.481 262 129 12 7 240 37 265 2.61e-13 68.9
MS.gene84698.t1 MTR_5g057790 24.907 269 159 9 4 238 46 305 2.73e-13 68.9
MS.gene84698.t1 MTR_7g061050 26.906 223 124 6 4 196 13 226 2.88e-13 68.9
MS.gene84698.t1 MTR_7g056003 26.160 237 114 9 7 197 18 239 2.90e-13 68.9
MS.gene84698.t1 MTR_7g061090 26.710 307 150 14 4 248 22 315 4.21e-13 68.6
MS.gene84698.t1 MTR_4g030090 26.804 291 160 14 5 248 15 299 5.31e-13 68.2
MS.gene84698.t1 MTR_8g464770 27.863 262 133 15 4 219 12 263 5.56e-13 68.2
MS.gene84698.t1 MTR_3g024150 27.206 272 138 14 7 239 38 288 7.44e-13 67.8
MS.gene84698.t1 MTR_4g116330 29.680 219 116 9 4 194 23 231 7.83e-13 67.4
MS.gene84698.t1 MTR_2g021252 24.621 264 159 11 7 245 50 298 1.08e-12 67.4
MS.gene84698.t1 MTR_3g010870 24.427 262 161 8 4 239 37 287 1.17e-12 67.0
MS.gene84698.t1 MTR_7g066850 26.335 281 147 13 4 238 23 289 1.22e-12 67.4
MS.gene84698.t1 MTR_7g055987 25.623 281 157 11 7 248 23 290 1.22e-12 67.0
MS.gene84698.t1 MTR_3g083640 26.792 265 158 12 1 239 52 306 1.44e-12 67.0
MS.gene84698.t1 MTR_4g117550 23.636 275 158 12 4 230 17 287 1.45e-12 67.0
MS.gene84698.t1 MTR_2g022000 25.466 322 158 14 4 248 16 332 1.56e-12 67.0
MS.gene84698.t1 MTR_3g464470 26.606 218 132 10 4 198 7 219 1.73e-12 66.6
MS.gene84698.t1 MTR_7g007300 26.515 264 148 11 4 239 103 348 1.73e-12 66.6
MS.gene84698.t1 MTR_4g023130 25.221 226 120 7 4 220 9 194 2.04e-12 65.9
MS.gene84698.t1 MTR_6g027910 25.806 279 157 16 7 239 12 286 2.21e-12 66.2
MS.gene84698.t1 MTR_2g025995 70.455 44 13 0 4 47 6 49 2.38e-12 65.1
MS.gene84698.t1 MTR_4g117780 27.542 236 138 10 1 212 8 234 2.45e-12 66.2
MS.gene84698.t1 MTR_7g060940 28.507 221 115 9 4 196 22 227 3.10e-12 65.9
MS.gene84698.t1 MTR_3g010430 25.000 280 151 11 4 242 36 297 3.50e-12 65.9
MS.gene84698.t1 MTR_5g046260 23.922 255 148 9 1 239 1 225 4.00e-12 65.1
MS.gene84698.t1 MTR_7g066840 24.000 300 154 12 4 246 23 305 4.58e-12 65.5
MS.gene84698.t1 MTR_1g007410 26.471 272 140 13 4 220 22 288 4.96e-12 65.5
MS.gene84698.t1 MTR_8g046310 27.132 258 150 10 1 225 13 265 5.08e-12 65.1
MS.gene84698.t1 MTR_2g048580 26.160 237 142 10 4 221 8 230 5.80e-12 65.1
MS.gene84698.t1 MTR_4g021785 25.641 273 155 11 4 246 9 263 5.93e-12 65.1
MS.gene84698.t1 MTR_0129s0070 24.719 267 144 13 4 220 17 276 6.04e-12 65.1
MS.gene84698.t1 MTR_3g010520 24.514 257 158 9 4 241 25 264 7.15e-12 64.7
MS.gene84698.t1 MTR_6g048120 24.823 282 151 13 4 239 36 302 7.67e-12 64.7
MS.gene84698.t1 MTR_3g010970 24.427 262 149 13 7 239 51 292 8.42e-12 64.7
MS.gene84698.t1 MTR_3g010920 25.391 256 154 10 4 239 44 282 8.86e-12 64.7
MS.gene84698.t1 MTR_5g070130 29.891 184 95 6 7 165 14 188 9.08e-12 64.7
MS.gene84698.t1 MTR_3g464500 25.455 220 135 9 4 198 27 242 9.58e-12 64.3
MS.gene84698.t1 MTR_6g053240 23.571 280 161 12 1 239 25 292 1.15e-11 64.3
MS.gene84698.t1 MTR_4g109270 31.383 188 95 9 3 166 7 184 1.25e-11 63.9
MS.gene84698.t1 MTR_0242s0060 24.916 297 150 12 4 238 9 294 1.60e-11 63.9
MS.gene84698.t1 MTR_0242s0040 24.916 297 150 12 4 238 9 294 1.60e-11 63.9
MS.gene84698.t1 MTR_4g116340 27.670 206 120 10 7 193 39 234 1.72e-11 62.8
MS.gene84698.t1 MTR_7g078840 25.817 306 156 14 5 240 11 315 1.94e-11 63.5
MS.gene84698.t1 MTR_7g091630 24.830 294 158 13 4 242 32 317 1.95e-11 63.5
MS.gene84698.t1 MTR_1g022200 23.200 250 168 5 1 226 12 261 2.32e-11 63.2
MS.gene84698.t1 MTR_1g115160 25.194 258 159 13 4 239 22 267 2.47e-11 63.2
MS.gene84698.t1 MTR_3g011120 28.623 276 139 15 4 233 14 277 2.68e-11 63.2
MS.gene84698.t1 MTR_2g078870 24.339 189 118 11 60 239 36 208 2.95e-11 62.8
MS.gene84698.t1 MTR_6g060650 27.888 251 144 9 4 221 8 254 3.08e-11 62.8
MS.gene84698.t1 MTR_5g037680 24.742 291 159 13 1 242 5 284 3.09e-11 63.2
MS.gene84698.t1 MTR_4g013180 24.739 287 156 13 5 240 12 289 3.14e-11 63.2
MS.gene84698.t1 MTR_6g021880 25.098 255 155 12 15 236 31 282 3.39e-11 62.8
MS.gene84698.t1 MTR_7g028660 27.660 282 151 13 4 238 11 286 4.68e-11 62.4
MS.gene84698.t1 MTR_7g017040 28.936 235 111 14 4 191 16 241 5.45e-11 62.4
MS.gene84698.t1 MTR_7g066010 22.814 263 157 7 4 220 21 283 6.01e-11 62.0
MS.gene84698.t1 MTR_7g067680 25.651 269 142 10 1 239 46 286 6.98e-11 62.0
MS.gene84698.t1 MTR_5g069760 29.500 200 99 9 4 173 6 193 7.12e-11 62.0
MS.gene84698.t1 MTR_8g033110 25.952 289 142 13 4 228 14 294 7.43e-11 62.0
MS.gene84698.t1 MTR_8g066440 23.920 301 163 11 5 247 24 316 7.69e-11 62.0
MS.gene84698.t1 MTR_3g010870 27.179 195 107 6 4 173 37 221 8.55e-11 61.2
MS.gene84698.t1 MTR_7g070830 23.843 281 153 11 2 221 19 299 9.21e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84698.t1 AT4G12560 29.137 278 160 12 1 242 1 277 1.49e-23 98.6
MS.gene84698.t1 AT4G12560 29.137 278 160 12 1 242 1 277 1.49e-23 98.6
MS.gene84698.t1 AT4G12560 29.137 278 160 12 1 242 1 277 1.49e-23 98.6
MS.gene84698.t1 AT3G06240 27.240 279 134 9 4 221 36 306 1.28e-20 90.5
MS.gene84698.t1 AT2G27520 31.466 232 124 9 3 220 5 215 3.29e-16 77.4
MS.gene84698.t1 AT3G17530 26.939 245 147 10 1 220 3 240 1.47e-15 75.5
MS.gene84698.t1 AT4G22390 27.679 224 129 9 1 193 1 222 2.71e-15 75.1
MS.gene84698.t1 AT4G22390 27.679 224 129 9 1 193 1 222 2.93e-15 74.7
MS.gene84698.t1 AT3G21170 26.182 275 159 10 3 239 6 274 7.09e-15 73.6
MS.gene84698.t1 AT3G22730 26.378 254 161 7 1 234 3 250 2.78e-13 68.9
MS.gene84698.t1 AT4G10190 27.197 239 149 10 3 220 8 242 2.84e-13 68.9
MS.gene84698.t1 AT2G04920 28.099 242 146 10 1 220 1 236 3.61e-13 68.6
MS.gene84698.t1 AT3G10430 27.273 231 149 8 2 217 3 229 4.62e-13 68.2
MS.gene84698.t1 AT3G22700 25.506 247 155 9 1 223 2 243 5.70e-13 67.8
MS.gene84698.t1 AT1G12870 25.758 264 137 10 2 222 31 278 7.92e-13 67.8
MS.gene84698.t1 AT1G32600 27.807 187 105 9 47 220 3 172 1.05e-12 66.6
MS.gene84698.t1 AT3G08750 26.316 228 151 9 1 217 9 230 4.99e-12 65.5
MS.gene84698.t1 AT3G16210 24.893 233 144 9 4 220 5 222 7.42e-12 64.7
MS.gene84698.t1 AT3G52320 25.000 240 157 7 1 220 24 260 1.10e-11 64.3
MS.gene84698.t1 AT3G17480 25.306 245 141 8 1 214 9 242 2.16e-11 63.5
MS.gene84698.t1 AT1G47390 30.508 177 104 7 2 166 5 174 2.60e-11 63.2

Find 60 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCTCTTGTATCTATTTC+AGG 0.179554 3.4:+80928833 None:intergenic
ACGGCCTTGATATCGCTTTC+TGG 0.193114 3.4:-80929201 MS.gene84698:CDS
GATTAAATGTGTTTCGCTTT+TGG 0.248289 3.4:-80928813 MS.gene84698:CDS
GAGTGATGATTACGGGTGTT+AGG 0.301404 3.4:+80929175 None:intergenic
CGAATTGCGGTGGTTAGGTT+AGG 0.301996 3.4:+80929292 None:intergenic
TCAGCTTCAAAACTAATTCA+TGG 0.306441 3.4:-80929018 MS.gene84698:CDS
GAAATCGAGTTGGTAGAAAT+TGG 0.311149 3.4:+80929315 None:intergenic
GAAGTTGTGGGAATCGATTA+TGG 0.340616 3.4:+80929393 None:intergenic
TGAAATCCTCTCCCGCTTAC+CGG 0.365871 3.4:-80929461 MS.gene84698:CDS
TAATTCATGGAAAGTACTTT+CGG 0.397495 3.4:-80929005 MS.gene84698:CDS
CACTCCATCCCTCACATAAT+CGG 0.411999 3.4:-80929157 MS.gene84698:CDS
TTCGAATCAACTATCCTTTG+AGG 0.428442 3.4:-80929273 MS.gene84698:CDS
TATTTCGTCACCTGAAACCA+TGG 0.432119 3.4:-80928969 MS.gene84698:CDS
TACAAACTTCTCAGAATCTC+TGG 0.436159 3.4:-80929091 MS.gene84698:CDS
AGGGATGACATCTATCTCCT+TGG 0.438636 3.4:-80929253 MS.gene84698:CDS
AAGGATGAGGTTGAAGTTGA+AGG 0.441671 3.4:+80929348 None:intergenic
GAGGGATTGCACCGGTAAGC+GGG 0.445609 3.4:+80929450 None:intergenic
AGGGATGGAGTGATGATTAC+GGG 0.451460 3.4:+80929168 None:intergenic
GAATTGCGGTGGTTAGGTTA+GGG 0.463201 3.4:+80929293 None:intergenic
TGATTCGAATTGCGGTGGTT+AGG 0.471462 3.4:+80929287 None:intergenic
AGTGATGATTACGGGTGTTA+GGG 0.480544 3.4:+80929176 None:intergenic
CTTGTATCTATTTCAGGAAG+AGG 0.483511 3.4:+80928839 None:intergenic
TCGAATCAACTATCCTTTGA+GGG 0.487096 3.4:-80929272 MS.gene84698:CDS
GAGGGATGGAGTGATGATTA+CGG 0.495477 3.4:+80929167 None:intergenic
AAGTTGATCGGAATCGGAGG+AGG 0.503234 3.4:+80929431 None:intergenic
ATTGCACCGGTAAGCGGGAG+AGG 0.515069 3.4:+80929455 None:intergenic
GGTTCCAGAAAGCGATATCA+AGG 0.517991 3.4:+80929197 None:intergenic
GTAGCGAAAGTGTGGTGCTT+TGG 0.520871 3.4:+80929055 None:intergenic
CACATAATCGGTGGTGTCAG+TGG 0.547213 3.4:-80929145 MS.gene84698:CDS
ATTTCGTCACCTGAAACCAT+GGG 0.553433 3.4:-80928968 MS.gene84698:CDS
AGGATAGTTGATTCGAATTG+CGG 0.555790 3.4:+80929279 None:intergenic
TATCTCCTTGGTTCATGCAA+CGG 0.556612 3.4:-80929241 MS.gene84698:CDS
GGAGGGATTGCACCGGTAAG+CGG 0.565081 3.4:+80929449 None:intergenic
CTTGTGTTATGTTAAACGCA+AGG 0.568358 3.4:+80928879 None:intergenic
AGTGAAGGTTAGTGAAGTTG+TGG 0.573595 3.4:+80929380 None:intergenic
CAAGGCCGTTAGAGATGCAT+AGG 0.574361 3.4:+80929215 None:intergenic
AGAAATTGGAGTGGTGGAGA+AGG 0.582510 3.4:+80929329 None:intergenic
GGCCGTTAGAGATGCATAGG+AGG 0.585610 3.4:+80929218 None:intergenic
GTTGGTAGAAATTGGAGTGG+TGG 0.596367 3.4:+80929323 None:intergenic
TTAGGTTAGGGAAATCGAGT+TGG 0.599385 3.4:+80929305 None:intergenic
AGATAGATGTCATCCCTCAA+AGG 0.607610 3.4:+80929259 None:intergenic
TTGAAGTTGATCGGAATCGG+AGG 0.611579 3.4:+80929428 None:intergenic
GTGAAGGTTAGTGAAGTTGT+GGG 0.611975 3.4:+80929381 None:intergenic
TGGAGTGGTGGAGAAGGATG+AGG 0.615741 3.4:+80929335 None:intergenic
AGTTGATCGGAATCGGAGGA+GGG 0.616474 3.4:+80929432 None:intergenic
ACCACCGATTATGTGAGGGA+TGG 0.632773 3.4:+80929153 None:intergenic
TCAGGTGACGAAATAACATA+CGG 0.634301 3.4:+80928977 None:intergenic
ATTTCAGTGAATAAATCTGA+CGG 0.643833 3.4:+80929478 None:intergenic
ATAGTTGATTCGAATTGCGG+TGG 0.645324 3.4:+80929282 None:intergenic
TCCATCCCTCACATAATCGG+TGG 0.663170 3.4:-80929154 MS.gene84698:CDS
TTTCGTCACCTGAAACCATG+GGG 0.665249 3.4:-80928967 MS.gene84698:CDS
CTGACACCACCGATTATGTG+AGG 0.667554 3.4:+80929148 None:intergenic
TGACACCACCGATTATGTGA+GGG 0.668003 3.4:+80929149 None:intergenic
CGAGTTGGTAGAAATTGGAG+TGG 0.671959 3.4:+80929320 None:intergenic
GGCCTCCTATGCATCTCTAA+CGG 0.672081 3.4:-80929220 MS.gene84698:CDS
TCACTTGCGTAGCGAAAGTG+TGG 0.674991 3.4:+80929047 None:intergenic
AACACAAGAGATATTCAATG+AGG 0.684796 3.4:-80928864 MS.gene84698:CDS
GGAGGCCGTTGCATGAACCA+AGG 0.689413 3.4:+80929236 None:intergenic
AATCGGAGGAGGGATTGCAC+CGG 0.690273 3.4:+80929442 None:intergenic
TTCGTCACCTGAAACCATGG+GGG 0.706521 3.4:-80928966 MS.gene84698:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTAATAAGTTTGATGTT+TGG - chr3.4:80929408-80929427 MS.gene84698:CDS 20.0%
!! AACTAATAAGTTTGATGTTT+GGG - chr3.4:80929409-80929428 MS.gene84698:CDS 20.0%
!!! GTAAATTGTTTACTTTTGTA+GGG - chr3.4:80929465-80929484 MS.gene84698:CDS 20.0%
!!! TGTAAATTGTTTACTTTTGT+AGG - chr3.4:80929464-80929483 MS.gene84698:CDS 20.0%
! AATATGGATTTAGAGATAGT+TGG - chr3.4:80929441-80929460 MS.gene84698:CDS 25.0%
! ATTTCAGTGAATAAATCTGA+CGG + chr3.4:80928687-80928706 None:intergenic 25.0%
!!! ATTAAATGTGTTTCGCTTTT+GGG - chr3.4:80929350-80929369 MS.gene84698:CDS 25.0%
!!! TAAGTGATTTTGAAGTTGAT+CGG + chr3.4:80928746-80928765 None:intergenic 25.0%
!!! TAATTCATGGAAAGTACTTT+CGG - chr3.4:80929157-80929176 MS.gene84698:CDS 25.0%
AACACAAGAGATATTCAATG+AGG - chr3.4:80929298-80929317 MS.gene84698:CDS 30.0%
ATCTCTCTTGTATCTATTTC+AGG + chr3.4:80929332-80929351 None:intergenic 30.0%
TCAGCTTCAAAACTAATTCA+TGG - chr3.4:80929144-80929163 MS.gene84698:CDS 30.0%
! GATTAAATGTGTTTCGCTTT+TGG - chr3.4:80929349-80929368 MS.gene84698:CDS 30.0%
! TGCTGAGAATTCTTTTCATT+GGG - chr3.4:80929223-80929242 MS.gene84698:CDS 30.0%
!!! ATTTTGAAGTTGATCGGAAT+CGG + chr3.4:80928740-80928759 None:intergenic 30.0%
CTTGTATCTATTTCAGGAAG+AGG + chr3.4:80929326-80929345 None:intergenic 35.0%
CTTGTGTTATGTTAAACGCA+AGG + chr3.4:80929286-80929305 None:intergenic 35.0%
GTTTGGGTGATGAAAGAATA+TGG - chr3.4:80929425-80929444 MS.gene84698:CDS 35.0%
TACAAACTTCTCAGAATCTC+TGG - chr3.4:80929071-80929090 MS.gene84698:CDS 35.0%
TCAGGTGACGAAATAACATA+CGG + chr3.4:80929188-80929207 None:intergenic 35.0%
TCGAATCAACTATCCTTTGA+GGG - chr3.4:80928890-80928909 MS.gene84698:CDS 35.0%
TTCGAATCAACTATCCTTTG+AGG - chr3.4:80928889-80928908 MS.gene84698:CDS 35.0%
! GTGCTGAGAATTCTTTTCAT+TGG - chr3.4:80929222-80929241 MS.gene84698:CDS 35.0%
!! AGGATAGTTGATTCGAATTG+CGG + chr3.4:80928886-80928905 None:intergenic 35.0%
!! GAAATCGAGTTGGTAGAAAT+TGG + chr3.4:80928850-80928869 None:intergenic 35.0%
!! TGTTTACTTTTGTAGGGCAA+TGG - chr3.4:80929471-80929490 MS.gene84698:CDS 35.0%
!!! TGAAGGAGTTTTTGAAGTGA+AGG + chr3.4:80928800-80928819 None:intergenic 35.0%
AAGGATGAGGTTGAAGTTGA+AGG + chr3.4:80928817-80928836 None:intergenic 40.0%
AGATAGATGTCATCCCTCAA+AGG + chr3.4:80928906-80928925 None:intergenic 40.0%
AGTGAAGGTTAGTGAAGTTG+TGG + chr3.4:80928785-80928804 None:intergenic 40.0%
AGTGATGATTACGGGTGTTA+GGG + chr3.4:80928989-80929008 None:intergenic 40.0%
ATTTCGTCACCTGAAACCAT+GGG - chr3.4:80929194-80929213 MS.gene84698:CDS 40.0%
GAAGTTGTGGGAATCGATTA+TGG + chr3.4:80928772-80928791 None:intergenic 40.0%
GTGAAGGTTAGTGAAGTTGT+GGG + chr3.4:80928784-80928803 None:intergenic 40.0%
TATCTCCTTGGTTCATGCAA+CGG - chr3.4:80928921-80928940 MS.gene84698:CDS 40.0%
TATTTCGTCACCTGAAACCA+TGG - chr3.4:80929193-80929212 MS.gene84698:CDS 40.0%
TTAGGTTAGGGAAATCGAGT+TGG + chr3.4:80928860-80928879 None:intergenic 40.0%
!! ATAGTTGATTCGAATTGCGG+TGG + chr3.4:80928883-80928902 None:intergenic 40.0%
!! TTACTTTTGTAGGGCAATGG+TGG - chr3.4:80929474-80929493 MS.gene84698:CDS 40.0%
AGGGATGACATCTATCTCCT+TGG - chr3.4:80928909-80928928 MS.gene84698:CDS 45.0%
AGGGATGGAGTGATGATTAC+GGG + chr3.4:80928997-80929016 None:intergenic 45.0%
CACTCCATCCCTCACATAAT+CGG - chr3.4:80929005-80929024 MS.gene84698:CDS 45.0%
GAATTGCGGTGGTTAGGTTA+GGG + chr3.4:80928872-80928891 None:intergenic 45.0%
GAGGGATGGAGTGATGATTA+CGG + chr3.4:80928998-80929017 None:intergenic 45.0%
GAGTGATGATTACGGGTGTT+AGG + chr3.4:80928990-80929009 None:intergenic 45.0%
GGTTCCAGAAAGCGATATCA+AGG + chr3.4:80928968-80928987 None:intergenic 45.0%
TGATTCGAATTGCGGTGGTT+AGG + chr3.4:80928878-80928897 None:intergenic 45.0%
TTTCGTCACCTGAAACCATG+GGG - chr3.4:80929195-80929214 MS.gene84698:CDS 45.0%
! AGAAATTGGAGTGGTGGAGA+AGG + chr3.4:80928836-80928855 None:intergenic 45.0%
! GTTGGTAGAAATTGGAGTGG+TGG + chr3.4:80928842-80928861 None:intergenic 45.0%
! TGACACCACCGATTATGTGA+GGG + chr3.4:80929016-80929035 None:intergenic 45.0%
! TTGAAGTTGATCGGAATCGG+AGG + chr3.4:80928737-80928756 None:intergenic 45.0%
!! CGAGTTGGTAGAAATTGGAG+TGG + chr3.4:80928845-80928864 None:intergenic 45.0%
ACGGCCTTGATATCGCTTTC+TGG - chr3.4:80928961-80928980 MS.gene84698:CDS 50.0%
AGTTGATCGGAATCGGAGGA+GGG + chr3.4:80928733-80928752 None:intergenic 50.0%
ATTCTCAGCACAAACCCCCA+TGG + chr3.4:80929213-80929232 None:intergenic 50.0%
CAAGGCCGTTAGAGATGCAT+AGG + chr3.4:80928950-80928969 None:intergenic 50.0%
CGAATTGCGGTGGTTAGGTT+AGG + chr3.4:80928873-80928892 None:intergenic 50.0%
GGCCTCCTATGCATCTCTAA+CGG - chr3.4:80928942-80928961 MS.gene84698:CDS 50.0%
TCACTTGCGTAGCGAAAGTG+TGG + chr3.4:80929118-80929137 None:intergenic 50.0%
TCCATCCCTCACATAATCGG+TGG - chr3.4:80929008-80929027 MS.gene84698:CDS 50.0%
TGAAATCCTCTCCCGCTTAC+CGG - chr3.4:80928701-80928720 MS.gene84698:intron 50.0%
TTCGTCACCTGAAACCATGG+GGG - chr3.4:80929196-80929215 MS.gene84698:CDS 50.0%
! AAGTTGATCGGAATCGGAGG+AGG + chr3.4:80928734-80928753 None:intergenic 50.0%
! ACCACCGATTATGTGAGGGA+TGG + chr3.4:80929012-80929031 None:intergenic 50.0%
! CACATAATCGGTGGTGTCAG+TGG - chr3.4:80929017-80929036 MS.gene84698:CDS 50.0%
! CTGACACCACCGATTATGTG+AGG + chr3.4:80929017-80929036 None:intergenic 50.0%
! GTAGCGAAAGTGTGGTGCTT+TGG + chr3.4:80929110-80929129 None:intergenic 50.0%
AATCGGAGGAGGGATTGCAC+CGG + chr3.4:80928723-80928742 None:intergenic 55.0%
GCACAAACCCCCATGGTTTC+AGG + chr3.4:80929206-80929225 None:intergenic 55.0%
GGCCGTTAGAGATGCATAGG+AGG + chr3.4:80928947-80928966 None:intergenic 55.0%
! TGGAGTGGTGGAGAAGGATG+AGG + chr3.4:80928830-80928849 None:intergenic 55.0%
GGAGGCCGTTGCATGAACCA+AGG + chr3.4:80928929-80928948 None:intergenic 60.0%
! ATTGCACCGGTAAGCGGGAG+AGG + chr3.4:80928710-80928729 None:intergenic 60.0%
! GAGGGATTGCACCGGTAAGC+GGG + chr3.4:80928715-80928734 None:intergenic 60.0%
! GGAGGGATTGCACCGGTAAG+CGG + chr3.4:80928716-80928735 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 80928672 80929512 80928672 ID=MS.gene84698
chr3.4 mRNA 80928672 80929512 80928672 ID=MS.gene84698.t1;Parent=MS.gene84698
chr3.4 exon 80928793 80929512 80928793 ID=MS.gene84698.t1.exon1;Parent=MS.gene84698.t1
chr3.4 CDS 80928793 80929512 80928793 ID=cds.MS.gene84698.t1;Parent=MS.gene84698.t1
chr3.4 exon 80928672 80928698 80928672 ID=MS.gene84698.t1.exon2;Parent=MS.gene84698.t1
chr3.4 CDS 80928672 80928698 80928672 ID=cds.MS.gene84698.t1;Parent=MS.gene84698.t1
Gene Sequence

>MS.gene84698

ATGTCTGATATTCCGTCAGATTTATTCACTGAAATCCTCTCCCGCTTACCGGTGCAATCCCTCCTCCGATTCCGATCAACTTCAAAATCACTTAAATCCATAATCGATTCCCACAACTTCACTAACCTTCACTTCAAAAACTCCTTCAACTTCAACCTCATCCTTCTCCACCACTCCAATTTCTACCAACTCGATTTCCCTAACCTAACCACCGCAATTCGAATCAACTATCCTTTGAGGGATGACATCTATCTCCTTGGTTCATGCAACGGCCTCCTATGCATCTCTAACGGCCTTGATATCGCTTTCTGGAACCCTAACACCCGTAATCATCACTCCATCCCTCACATAATCGGTGGTGTCAGTGGCAGCTTTGCTTTCTATCAATTCGCTGACGATTACAAACTTCTCAGAATCTCTGGTTGTTTAATTGATCCAAAGCACCACACTTTCGCTACGCAAGTGACACTCTTCAGCTTCAAAACTAATTCATGGAAAGTACTTTCGGATATACCGTATGTTATTTCGTCACCTGAAACCATGGGGGTTTGTGCTGAGAATTCTTTTCATTGGGTAGTGACTGCGAATCTTTATACTTATACGTGTTTAATCCTTGCGTTTAACATAACACAAGAGATATTCAATGAGGTTCCTCTTCCTGAAATAGATACAAGAGAGATTAAATGTGTTTCGCTTTTGGGAAAGTGTCTTTGCATCACTGTGAGTTATTGTTATCAAACTAATAAGTTTGATGTTTGGGTGATGAAAGAATATGGATTTAGAGATAGTTGGTGTAAATTGTTTACTTTTGTAGGGCAATGGTGGTTCAAATCACCTTTAA
Protein sequence

>MS.gene84698.t1

MSDIPSDLFTEILSRLPVQSLLRFRSTSKSLKSIIDSHNFTNLHFKNSFNFNLILLHHSNFYQLDFPNLTTAIRINYPLRDDIYLLGSCNGLLCISNGLDIAFWNPNTRNHHSIPHIIGGVSGSFAFYQFADDYKLLRISGCLIDPKHHTFATQVTLFSFKTNSWKVLSDIPYVISSPETMGVCAENSFHWVVTANLYTYTCLILAFNITQEIFNEVPLPEIDTREIKCVSLLGKCLCITGNGGSNHL