AlfalfaGEDB | MS.gene50301

M. sativa cultivar XinJiangDaYe / MS.gene50301

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50301.t1	XP_003605032.1	74.5	145	37	0	1	145	208	352	1.20E-54	222.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50301.t1	G7JVS7	74.5	145	37	0	1	145	208	352	8.5e-55	222.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene51191	MS.gene50301	PPI
MS.gene064086	MS.gene50301	PPI
MS.gene033430	MS.gene50301	PPI
MS.gene034677	MS.gene50301	PPI
MS.gene50298	MS.gene50301	PPI
MS.gene67687	MS.gene50301	PPI
MS.gene036583	MS.gene50301	PPI
MS.gene50301	MS.gene50305	PPI
MS.gene055694	MS.gene50301	PPI
MS.gene50301	MS.gene032969	PPI
MS.gene58314	MS.gene50301	PPI
MS.gene71159	MS.gene50301	PPI
MS.gene96448	MS.gene50301	PPI
MS.gene50301	MS.gene42445	PPI
MS.gene77858	MS.gene50301	PPI
MS.gene058692	MS.gene50301	PPI
MS.gene041392	MS.gene50301	PPI
MS.gene50301	MS.gene22715	PPI
MS.gene033083	MS.gene50301	PPI
MS.gene69309	MS.gene50301	PPI
MS.gene63658	MS.gene50301	PPI
MS.gene033081	MS.gene50301	PPI
MS.gene50301	MS.gene63657	PPI
MS.gene50301	MS.gene023996	PPI
MS.gene031591	MS.gene50301	PPI
MS.gene035263	MS.gene50301	PPI
MS.gene035262	MS.gene50301	PPI
MS.gene070461	MS.gene50301	PPI
MS.gene50301	MS.gene061240	PPI
MS.gene51199	MS.gene50301	PPI
MS.gene064108	MS.gene50301	PPI
MS.gene58315	MS.gene50301	PPI
MS.gene87557	MS.gene50301	PPI
MS.gene030114	MS.gene50301	PPI
MS.gene87559	MS.gene50301	PPI
MS.gene50301	MS.gene035234	PPI
MS.gene041473	MS.gene50301	PPI
MS.gene036663	MS.gene50301	PPI
MS.gene033431	MS.gene50301	PPI
MS.gene041475	MS.gene50301	PPI
MS.gene50301	MS.gene024979	PPI
MS.gene033441	MS.gene50301	PPI
MS.gene063474	MS.gene50301	PPI
MS.gene063826	MS.gene50301	PPI
MS.gene060367	MS.gene50301	PPI
MS.gene50301	MS.gene044425	PPI
MS.gene44892	MS.gene50301	PPI
MS.gene44428	MS.gene50301	PPI
MS.gene036664	MS.gene50301	PPI
MS.gene58239	MS.gene50301	PPI
MS.gene024011	MS.gene50301	PPI
MS.gene57531	MS.gene50301	PPI
MS.gene064111	MS.gene50301	PPI
MS.gene87584	MS.gene50301	PPI
MS.gene50301	MS.gene27022	PPI
MS.gene26829	MS.gene50301	PPI
MS.gene39262	MS.gene50301	PPI
MS.gene58241	MS.gene50301	PPI
MS.gene053256	MS.gene50301	PPI
MS.gene045474	MS.gene50301	PPI
MS.gene75875	MS.gene50301	PPI
MS.gene058694	MS.gene50301	PPI
MS.gene064090	MS.gene50301	PPI
MS.gene50301	MS.gene024009	PPI
MS.gene50301	MS.gene036599	PPI
MS.gene54049	MS.gene50301	PPI
MS.gene43789	MS.gene50301	PPI
MS.gene50301	MS.gene006705	PPI
MS.gene006710	MS.gene50301	PPI
MS.gene072177	MS.gene50301	PPI
MS.gene58722	MS.gene50301	PPI
MS.gene87554	MS.gene50301	PPI
MS.gene033079	MS.gene50301	PPI
MS.gene061241	MS.gene50301	PPI
MS.gene24213	MS.gene50301	PPI
MS.gene64001	MS.gene50301	PPI
MS.gene50301	MS.gene38220	PPI
MS.gene58312	MS.gene50301	PPI
MS.gene36704	MS.gene50301	PPI
MS.gene032970	MS.gene50301	PPI
MS.gene77856	MS.gene50301	PPI
MS.gene24826	MS.gene50301	PPI
MS.gene50301	MS.gene058696	PPI
MS.gene036556	MS.gene50301	PPI
MS.gene50301	MS.gene009893	PPI
MS.gene58313	MS.gene50301	PPI
MS.gene066622	MS.gene50301	PPI
MS.gene44887	MS.gene50301	PPI
MS.gene85043	MS.gene50301	PPI
MS.gene39265	MS.gene50301	PPI
MS.gene51188	MS.gene50301	PPI
MS.gene63655	MS.gene50301	PPI
MS.gene44883	MS.gene50301	PPI
MS.gene88780	MS.gene50301	PPI
MS.gene41046	MS.gene50301	PPI
MS.gene063472	MS.gene50301	PPI
MS.gene87588	MS.gene50301	PPI
MS.gene017412	MS.gene50301	PPI
MS.gene80884	MS.gene50301	PPI
MS.gene51192	MS.gene50301	PPI
MS.gene87585	MS.gene50301	PPI
MS.gene009883	MS.gene50301	PPI
MS.gene58317	MS.gene50301	PPI
MS.gene044563	MS.gene50301	PPI
MS.gene069075	MS.gene50301	PPI
MS.gene033427	MS.gene50301	PPI
MS.gene40985	MS.gene50301	PPI
MS.gene041474	MS.gene50301	PPI
MS.gene50301	MS.gene045473	PPI
MS.gene27020	MS.gene50301	PPI
MS.gene58321	MS.gene50301	PPI
MS.gene86273	MS.gene50301	PPI
MS.gene041388	MS.gene50301	PPI
MS.gene062698	MS.gene50301	PPI
MS.gene57536	MS.gene50301	PPI
MS.gene96126	MS.gene50301	PPI
MS.gene019503	MS.gene50301	PPI
MS.gene50301	MS.gene40984	PPI
MS.gene51208	MS.gene50301	PPI
MS.gene016524	MS.gene50301	PPI
MS.gene50304	MS.gene50301	PPI
MS.gene045475	MS.gene50301	PPI
MS.gene50336	MS.gene50301	PPI
MS.gene59943	MS.gene50301	PPI
MS.gene90744	MS.gene50301	PPI
MS.gene51204	MS.gene50301	PPI
MS.gene58783	MS.gene50301	PPI
MS.gene31587	MS.gene50301	PPI
MS.gene036557	MS.gene50301	PPI
MS.gene041393	MS.gene50301	PPI
MS.gene048193	MS.gene50301	PPI
MS.gene50301	MS.gene58240	PPI
MS.gene50301	MS.gene27284	PPI
MS.gene50301	MS.gene034680	PPI
MS.gene84698	MS.gene50301	PPI
MS.gene009891	MS.gene50301	PPI
MS.gene066641	MS.gene50301	PPI
MS.gene82082	MS.gene50301	PPI
MS.gene000038	MS.gene50301	PPI
MS.gene67501	MS.gene50301	PPI
MS.gene50301	MS.gene51190	PPI
MS.gene90742	MS.gene50301	PPI
MS.gene57535	MS.gene50301	PPI
MS.gene025887	MS.gene50301	PPI
MS.gene019507	MS.gene50301	PPI
MS.gene041470	MS.gene50301	PPI
MS.gene024979	MS.gene50301	PPI
MS.gene87200	MS.gene50301	PPI
MS.gene058701	MS.gene50301	PPI
MS.gene58319	MS.gene50301	PPI
MS.gene26830	MS.gene50301	PPI
MS.gene015089	MS.gene50301	PPI
MS.gene90743	MS.gene50301	PPI
MS.gene44885	MS.gene50301	PPI
MS.gene011679	MS.gene50301	PPI
MS.gene060370	MS.gene50301	PPI
MS.gene066635	MS.gene50301	PPI
MS.gene50301	MS.gene041489	PPI
MS.gene57533	MS.gene50301	PPI
MS.gene51190	MS.gene50301	PPI
MS.gene96406	MS.gene50301	PPI
MS.gene87586	MS.gene50301	PPI
MS.gene57532	MS.gene50301	PPI
MS.gene68890	MS.gene50301	PPI
MS.gene50301	MS.gene035238	PPI
MS.gene40887	MS.gene50301	PPI
MS.gene50339	MS.gene50301	PPI
MS.gene046958	MS.gene50301	PPI
MS.gene034688	MS.gene50301	PPI
MS.gene060366	MS.gene50301	PPI
MS.gene047279	MS.gene50301	PPI
MS.gene48221	MS.gene50301	PPI
MS.gene50301	MS.gene80610	PPI
MS.gene57529	MS.gene50301	PPI
MS.gene041395	MS.gene50301	PPI
MS.gene40886	MS.gene50301	PPI
MS.gene40902	MS.gene50301	PPI
MS.gene50301	MS.gene041391	PPI
MS.gene03060	MS.gene50301	PPI
MS.gene27051	MS.gene50301	PPI
MS.gene021553	MS.gene50301	PPI
MS.gene26957	MS.gene50301	PPI
MS.gene060368	MS.gene50301	PPI
MS.gene033875	MS.gene50301	PPI
MS.gene77704	MS.gene50301	PPI
MS.gene036582	MS.gene50301	PPI
MS.gene27021	MS.gene50301	PPI
MS.gene066620	MS.gene50301	PPI
MS.gene035236	MS.gene50301	PPI
MS.gene50301	MS.gene87554	PPI
MS.gene041394	MS.gene50301	PPI
MS.gene50301	MS.gene064083	PPI
MS.gene059157	MS.gene50301	PPI
MS.gene58781	MS.gene50301	PPI
MS.gene57717	MS.gene50301	PPI
MS.gene57525	MS.gene50301	PPI
MS.gene028390	MS.gene50301	PPI
MS.gene011106	MS.gene50301	PPI
MS.gene033440	MS.gene50301	PPI
MS.gene62398	MS.gene50301	PPI
MS.gene60027	MS.gene50301	PPI
MS.gene44886	MS.gene50301	PPI
MS.gene50301	MS.gene016220	PPI
MS.gene50301	MS.gene024008	PPI
MS.gene038756	MS.gene50301	PPI
MS.gene88776	MS.gene50301	PPI
MS.gene35068	MS.gene50301	PPI
MS.gene041390	MS.gene50301	PPI
MS.gene24286	MS.gene50301	PPI
MS.gene058693	MS.gene50301	PPI
MS.gene92376	MS.gene50301	PPI
MS.gene000035	MS.gene50301	PPI
MS.gene50329	MS.gene50301	PPI
MS.gene070462	MS.gene50301	PPI
MS.gene50301	MS.gene28758	PPI
MS.gene31637	MS.gene50301	PPI
MS.gene87573	MS.gene50301	PPI
MS.gene57537	MS.gene50301	PPI
MS.gene42447	MS.gene50301	PPI
MS.gene019504	MS.gene50301	PPI
MS.gene034762	MS.gene50301	PPI
MS.gene064114	MS.gene50301	PPI
MS.gene059156	MS.gene50301	PPI
MS.gene58716	MS.gene50301	PPI
MS.gene68580	MS.gene50301	PPI
MS.gene033444	MS.gene50301	PPI
MS.gene019505	MS.gene50301	PPI
MS.gene50306	MS.gene50301	PPI
MS.gene58785	MS.gene50301	PPI
MS.gene58316	MS.gene50301	PPI
MS.gene066639	MS.gene50301	PPI
MS.gene26949	MS.gene50301	PPI
MS.gene044426	MS.gene50301	PPI
MS.gene012215	MS.gene50301	PPI
MS.gene036558	MS.gene50301	PPI
MS.gene50309	MS.gene50301	PPI
MS.gene036760	MS.gene50301	PPI
MS.gene50301	MS.gene033442	PPI
MS.gene58311	MS.gene50301	PPI
MS.gene058669	MS.gene50301	PPI
MS.gene57527	MS.gene50301	PPI
MS.gene59637	MS.gene50301	PPI
MS.gene033432	MS.gene50301	PPI
MS.gene50301	MS.gene44428	PPI
MS.gene033426	MS.gene50301	PPI
MS.gene035237	MS.gene50301	PPI
MS.gene59639	MS.gene50301	PPI
MS.gene034681	MS.gene50301	PPI
MS.gene031590	MS.gene50301	PPI
MS.gene036584	MS.gene50301	PPI
MS.gene50301	MS.gene058703	PPI
MS.gene035261	MS.gene50301	PPI
MS.gene50301	MS.gene024000	PPI
MS.gene010758	MS.gene50301	PPI
MS.gene063670	MS.gene50301	PPI
MS.gene57530	MS.gene50301	PPI
MS.gene066626	MS.gene50301	PPI
MS.gene019506	MS.gene50301	PPI
MS.gene50326	MS.gene50301	PPI
MS.gene42451	MS.gene50301	PPI
MS.gene51200	MS.gene50301	PPI
MS.gene54541	MS.gene50301	PPI
MS.gene024002	MS.gene50301	PPI
MS.gene036581	MS.gene50301	PPI
MS.gene87564	MS.gene50301	PPI
MS.gene88774	MS.gene50301	PPI
MS.gene50301	MS.gene36595	PPI
MS.gene034686	MS.gene50301	PPI
MS.gene40982	MS.gene50301	PPI
MS.gene42452	MS.gene50301	PPI
MS.gene003076	MS.gene50301	PPI
MS.gene40986	MS.gene50301	PPI
MS.gene063414	MS.gene50301	PPI
MS.gene50301	MS.gene50311	PPI
MS.gene69307	MS.gene50301	PPI
MS.gene009892	MS.gene50301	PPI
MS.gene50301	MS.gene058989	PPI
MS.gene50327	MS.gene50301	PPI
MS.gene036662	MS.gene50301	PPI
MS.gene50301	MS.gene57538	PPI
MS.gene87563	MS.gene50301	PPI
MS.gene50301	MS.gene041468	PPI
MS.gene57526	MS.gene50301	PPI
MS.gene064109	MS.gene50301	PPI
MS.gene50301	MS.gene27319	PPI
MS.gene24212	MS.gene50301	PPI
MS.gene051820	MS.gene50301	PPI
MS.gene97996	MS.gene50301	PPI
MS.gene035235	MS.gene50301	PPI
MS.gene40988	MS.gene50301	PPI
MS.gene58320	MS.gene50301	PPI
MS.gene81242	MS.gene50301	PPI
MS.gene26101	MS.gene50301	PPI
MS.gene066120	MS.gene50301	PPI
MS.gene27283	MS.gene50301	PPI
MS.gene64203	MS.gene50301	PPI
MS.gene045140	MS.gene50301	PPI
MS.gene053299	MS.gene50301	PPI
MS.gene024004	MS.gene50301	PPI
MS.gene42444	MS.gene50301	PPI
MS.gene51202	MS.gene50301	PPI
MS.gene059101	MS.gene50301	PPI
MS.gene87562	MS.gene50301	PPI
MS.gene066623	MS.gene50301	PPI
MS.gene40904	MS.gene50301	PPI
MS.gene50301	MS.gene24173	PPI
MS.gene024420	MS.gene50301	PPI
MS.gene87569	MS.gene50301	PPI
MS.gene064104	MS.gene50301	PPI
MS.gene40878	MS.gene50301	PPI
MS.gene041491	MS.gene50301	PPI
MS.gene51201	MS.gene50301	PPI
MS.gene88416	MS.gene50301	PPI
MS.gene50301	MS.gene023999	PPI
MS.gene033443	MS.gene50301	PPI
MS.gene51207	MS.gene50301	PPI
MS.gene50337	MS.gene50301	PPI
MS.gene059096	MS.gene50301	PPI
MS.gene57528	MS.gene50301	PPI
MS.gene50297	MS.gene50301	PPI
MS.gene006711	MS.gene50301	PPI
MS.gene50332	MS.gene50301	PPI
MS.gene27285	MS.gene50301	PPI
MS.gene064091	MS.gene50301	PPI
MS.gene064112	MS.gene50301	PPI
MS.gene053257	MS.gene50301	PPI
MS.gene045476	MS.gene50301	PPI
MS.gene24208	MS.gene50301	PPI
MS.gene50301	MS.gene000036	PPI
MS.gene50307	MS.gene50301	PPI
MS.gene43796	MS.gene50301	PPI
MS.gene034690	MS.gene50301	PPI
MS.gene50301	MS.gene50320	PPI
MS.gene044429	MS.gene50301	PPI
MS.gene51189	MS.gene50301	PPI
MS.gene85454	MS.gene50301	PPI
MS.gene96407	MS.gene50301	PPI
MS.gene77857	MS.gene50301	PPI
MS.gene43790	MS.gene50301	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50301.t1	MTR_4g023080	73.973	146	38	0	1	146	208	353	1.59e-72	221
MS.gene50301.t1	MTR_4g023130	72.603	146	40	0	1	146	167	312	6.48e-71	216
MS.gene50301.t1	MTR_4g023090	68.293	164	35	3	1	147	223	386	1.08e-70	217
MS.gene50301.t1	MTR_4g023380	65.698	172	34	3	1	147	208	379	3.02e-69	213
MS.gene50301.t1	MTR_4g021785	68.027	147	47	0	1	147	209	355	1.44e-66	206
MS.gene50301.t1	MTR_4g023070	61.875	160	47	2	1	146	210	369	1.95e-60	191
MS.gene50301.t1	MTR_4g023120	60.870	161	49	2	1	147	210	370	1.28e-59	188
MS.gene50301.t1	MTR_3g103020	62.667	150	53	2	1	147	229	378	2.65e-58	185
MS.gene50301.t1	MTR_8g040935	60.390	154	54	3	1	147	55	208	9.50e-57	176
MS.gene50301.t1	MTR_4g109270	61.333	150	55	2	1	147	215	364	2.14e-56	180
MS.gene50301.t1	MTR_4g023440	86.458	96	13	0	52	147	237	332	2.57e-53	171
MS.gene50301.t1	MTR_4g023150	62.667	150	51	3	1	145	209	358	5.46e-53	171
MS.gene50301.t1	MTR_4g116330	57.237	152	60	2	1	147	229	380	1.54e-52	171
MS.gene50301.t1	MTR_4g023190	62.000	150	52	3	1	145	208	357	2.65e-52	169
MS.gene50301.t1	MTR_4g023200	61.333	150	53	3	1	145	209	358	2.89e-51	167
MS.gene50301.t1	MTR_6g060650	56.376	149	60	3	1	146	226	372	2.39e-50	165
MS.gene50301.t1	MTR_4g116320	59.060	149	54	3	1	144	109	255	1.36e-49	159
MS.gene50301.t1	MTR_8g433040	60.145	138	53	2	11	147	228	364	2.67e-47	157
MS.gene50301.t1	MTR_8g032380	60.145	138	53	2	11	147	228	364	2.67e-47	157
MS.gene50301.t1	MTR_4g109280	55.921	152	59	4	1	147	211	359	3.36e-47	156
MS.gene50301.t1	MTR_4g117780	58.170	153	58	2	1	147	215	367	8.13e-47	155
MS.gene50301.t1	MTR_6g463430	59.603	151	52	4	1	147	57	202	3.47e-46	149
MS.gene50301.t1	MTR_3g034180	57.047	149	58	4	2	147	344	489	6.35e-46	155
MS.gene50301.t1	MTR_4g117770	58.170	153	58	2	1	147	215	367	7.93e-46	153
MS.gene50301.t1	MTR_4g117810	58.170	153	58	2	1	147	215	367	7.93e-46	153
MS.gene50301.t1	MTR_4g117720	56.051	157	57	5	1	147	224	378	1.90e-45	152
MS.gene50301.t1	MTR_4g117850	56.863	153	54	6	1	144	227	376	2.19e-45	152
MS.gene50301.t1	MTR_4g117870	60.465	129	46	4	22	147	141	267	1.40e-44	147
MS.gene50301.t1	MTR_8g433030	59.259	135	50	4	11	142	205	337	4.40e-44	147
MS.gene50301.t1	MTR_8g032390	59.259	135	50	4	11	142	238	370	9.56e-44	147
MS.gene50301.t1	MTR_4g122850	56.579	152	59	6	1	147	215	364	3.03e-43	146
MS.gene50301.t1	MTR_5g097210	57.143	147	55	5	1	143	217	359	2.28e-42	144
MS.gene50301.t1	MTR_3g034160	57.823	147	58	3	2	146	230	374	2.56e-42	144
MS.gene50301.t1	MTR_5g070130	50.000	152	71	3	1	147	226	377	5.32e-42	143
MS.gene50301.t1	MTR_4g094365	54.248	153	62	5	1	147	214	364	7.50e-42	142
MS.gene50301.t1	MTR_5g070080	55.629	151	62	4	1	147	237	386	8.79e-41	140
MS.gene50301.t1	MTR_5g070088	50.968	155	65	4	1	147	235	386	8.56e-40	137
MS.gene50301.t1	MTR_1g055195	51.007	149	64	5	1	144	331	475	3.22e-39	138
MS.gene50301.t1	MTR_4g023430	79.012	81	12	1	72	147	142	222	3.45e-39	132
MS.gene50301.t1	MTR_3g034130	52.632	133	60	2	1	132	229	359	1.34e-38	134
MS.gene50301.t1	MTR_1g055175	46.667	150	74	4	1	146	53	200	3.22e-37	126
MS.gene50301.t1	MTR_5g023000	61.616	99	36	1	51	147	1	99	1.93e-36	121
MS.gene50301.t1	MTR_4g118360	55.039	129	47	5	25	146	1	125	2.52e-36	121
MS.gene50301.t1	MTR_4g118380	53.030	132	50	3	1	122	228	357	6.24e-36	127
MS.gene50301.t1	MTR_1g055165	46.358	151	75	4	1	147	170	318	1.06e-35	125
MS.gene50301.t1	MTR_1g055135	45.806	155	73	4	1	147	224	375	3.03e-35	125
MS.gene50301.t1	MTR_4g118400	51.748	143	54	4	1	141	165	294	5.78e-35	123
MS.gene50301.t1	MTR_4g116330	57.658	111	43	1	41	147	231	341	1.97e-34	122
MS.gene50301.t1	MTR_4g117750	50.758	132	54	2	25	145	350	481	8.15e-33	120
MS.gene50301.t1	MTR_4g117750	47.436	156	68	4	1	146	207	358	2.69e-28	108
MS.gene50301.t1	MTR_4g118370	50.388	129	57	4	19	144	133	257	3.02e-31	112
MS.gene50301.t1	MTR_4g117530	42.857	147	54	3	1	147	137	253	1.09e-30	111
MS.gene50301.t1	MTR_1g055250	42.963	135	72	4	1	134	123	253	2.45e-29	109
MS.gene50301.t1	MTR_7g079450	43.262	141	72	4	10	147	2	137	7.75e-29	103
MS.gene50301.t1	MTR_7g079400	44.595	148	68	5	10	147	194	337	7.85e-29	108
MS.gene50301.t1	MTR_7g079370	48.175	137	62	4	10	141	218	350	8.15e-29	108
MS.gene50301.t1	MTR_4g023100	83.636	55	9	0	93	147	65	119	5.96e-26	95.1
MS.gene50301.t1	MTR_8g102520	40.278	144	76	4	10	147	183	322	6.83e-26	100
MS.gene50301.t1	MTR_4g122860	48.438	128	56	5	27	147	196	320	7.63e-26	100
MS.gene50301.t1	MTR_7g117720	61.628	86	27	2	62	141	186	271	9.81e-25	96.3
MS.gene50301.t1	MTR_4g121580	48.739	119	50	4	21	137	230	339	1.30e-23	94.7
MS.gene50301.t1	MTR_4g122840	44.118	136	37	5	16	147	164	264	9.22e-22	88.2
MS.gene50301.t1	MTR_7g079420	39.073	151	77	6	6	147	1000	1144	4.37e-21	88.6
MS.gene50301.t1	MTR_8g098830	40.000	135	71	5	10	141	88	215	5.02e-21	85.5
MS.gene50301.t1	MTR_4g114700	50.515	97	41	2	49	138	122	218	2.58e-20	84.0
MS.gene50301.t1	MTR_2g048580	36.301	146	71	6	10	147	211	342	1.80e-18	80.5
MS.gene50301.t1	MTR_8g013005	62.712	59	20	1	91	147	1	59	1.36e-16	69.7
MS.gene50301.t1	MTR_2g064960	67.442	43	12	1	107	147	17	59	4.18e-12	58.2
MS.gene50301.t1	MTR_4g109290	62.264	53	18	1	97	147	136	188	7.94e-12	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 26 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTAACCATTTACTTAATTC+TGG	0.247939	4.4:-77642691	MS.gene50301:CDS
TTGGAGAATTTCTCAGTCTA+TGG	0.267319	4.4:-77642657	MS.gene50301:CDS
ATGATAAAGGACAGCTATTA+AGG	0.278962	4.4:-77642447	MS.gene50301:CDS
ATAAGGATACAGTTGAAATA+TGG	0.287555	4.4:-77642621	MS.gene50301:CDS
AATTGTTGCCTTTGATTTAA+CGG	0.294431	4.4:-77642749	MS.gene50301:CDS
TTGTTTGAGATGCCTCTTCC+AGG	0.350585	4.4:-77642718	MS.gene50301:CDS
AGGAAATCTTAATTCTAGAT+TGG	0.414662	4.4:-77642479	MS.gene50301:CDS
CTATTAAGGCATCGCTCCTT+CGG	0.422078	4.4:-77642433	MS.gene50301:CDS
TTGGTCAAGTATAATGATAA+AGG	0.451105	4.4:-77642460	MS.gene50301:CDS
TAAACTTGCTCGTTGTCACC+AGG	0.464044	4.4:+77642361	None:intergenic
TAAGGATACAGTTGAAATAT+GGG	0.473963	4.4:-77642620	MS.gene50301:CDS
TTTCCTTTCCGTTAAATCAA+AGG	0.475134	4.4:+77642741	None:intergenic
TGGAGAATTTCTCAGTCTAT+GGG	0.489976	4.4:-77642656	MS.gene50301:CDS
AATACAAAGTGCATTCGTCT+TGG	0.503299	4.4:-77642588	MS.gene50301:CDS
ATGGGCTGTGGACTATGATA+AGG	0.510847	4.4:-77642638	MS.gene50301:CDS
ATAGGGTGAAAATAGCGATC+AGG	0.512584	4.4:+77642532	None:intergenic
GAGTCTCTACTTTCACTCCC+TGG	0.547203	4.4:-77642379	MS.gene50301:CDS
ATTTCTCAGTCTATGGGCTG+TGG	0.553738	4.4:-77642650	MS.gene50301:CDS
TTGCCTTTGATTTAACGGAA+AGG	0.569675	4.4:-77642744	MS.gene50301:CDS
TGGTTAAAATCACCTGGAAG+AGG	0.570122	4.4:+77642706	None:intergenic
GTGAAAATAGCGATCAGGAA+TGG	0.580924	4.4:+77642537	None:intergenic
AGTAAATGGTTAAAATCACC+TGG	0.587427	4.4:+77642700	None:intergenic
CTATGCGTCGTGATTTACGT+TGG	0.619317	4.4:-77642777	MS.gene50301:CDS
AAACTTGCTCGTTGTCACCA+GGG	0.636630	4.4:+77642362	None:intergenic
ATCGGATTGACTATTACCGA+AGG	0.667712	4.4:+77642417	None:intergenic
CTCTGTATACATGACAACAT+CGG	0.674049	4.4:+77642399	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAAACCAGAATTAAGTAAA+TGG	+	chr4.4:77642458-77642477	None:intergenic	20.0%
!!	ACAAAAAATGGTGATATTAT+CGG	-	chr4.4:77642639-77642658	MS.gene50301:CDS	20.0%
!!	TTTAACCATTTACTTAATTC+TGG	-	chr4.4:77642450-77642469	MS.gene50301:CDS	20.0%
!!!	ATTTACTTAATTCTGGTTTT+TGG	-	chr4.4:77642457-77642476	MS.gene50301:CDS	20.0%
!!!	TTTACTTAATTCTGGTTTTT+GGG	-	chr4.4:77642458-77642477	MS.gene50301:CDS	20.0%
!	AGGAAATCTTAATTCTAGAT+TGG	-	chr4.4:77642662-77642681	MS.gene50301:CDS	25.0%
!	ATAAGGATACAGTTGAAATA+TGG	-	chr4.4:77642520-77642539	MS.gene50301:CDS	25.0%
!	TAAGGATACAGTTGAAATAT+GGG	-	chr4.4:77642521-77642540	MS.gene50301:CDS	25.0%
!	TTGGTCAAGTATAATGATAA+AGG	-	chr4.4:77642681-77642700	MS.gene50301:CDS	25.0%
!!	AATTGTTGCCTTTGATTTAA+CGG	-	chr4.4:77642392-77642411	MS.gene50301:CDS	25.0%
!!!	GATAATATCACCATTTTTTG+TGG	+	chr4.4:77642640-77642659	None:intergenic	25.0%
	AAAAATGGTGATATTATCGG+AGG	-	chr4.4:77642642-77642661	MS.gene50301:CDS	30.0%
	AGTAAATGGTTAAAATCACC+TGG	+	chr4.4:77642444-77642463	None:intergenic	30.0%
	ATGATAAAGGACAGCTATTA+AGG	-	chr4.4:77642694-77642713	MS.gene50301:CDS	30.0%
	TTTCCTTTCCGTTAAATCAA+AGG	+	chr4.4:77642403-77642422	None:intergenic	30.0%
!!!	AATTCTGGTTTTTGGGTATT+TGG	-	chr4.4:77642465-77642484	MS.gene50301:CDS	30.0%
!!!	CATTTTTTGTGGAGTACATA+GGG	+	chr4.4:77642629-77642648	None:intergenic	30.0%
	AATACAAAGTGCATTCGTCT+TGG	-	chr4.4:77642553-77642572	MS.gene50301:CDS	35.0%
	CCTATGTACTCCACAAAAAA+TGG	-	chr4.4:77642627-77642646	MS.gene50301:CDS	35.0%
	CTCTGTATACATGACAACAT+CGG	+	chr4.4:77642745-77642764	None:intergenic	35.0%
	TGGAGAATTTCTCAGTCTAT+GGG	-	chr4.4:77642485-77642504	MS.gene50301:CDS	35.0%
	TTGGAGAATTTCTCAGTCTA+TGG	-	chr4.4:77642484-77642503	MS.gene50301:CDS	35.0%
!	TTGCCTTTGATTTAACGGAA+AGG	-	chr4.4:77642397-77642416	MS.gene50301:CDS	35.0%
!!!	CCATTTTTTGTGGAGTACAT+AGG	+	chr4.4:77642630-77642649	None:intergenic	35.0%
	ATAGGGTGAAAATAGCGATC+AGG	+	chr4.4:77642612-77642631	None:intergenic	40.0%
	ATCGGATTGACTATTACCGA+AGG	+	chr4.4:77642727-77642746	None:intergenic	40.0%
	GTGAAAATAGCGATCAGGAA+TGG	+	chr4.4:77642607-77642626	None:intergenic	40.0%
	TGGTTAAAATCACCTGGAAG+AGG	+	chr4.4:77642438-77642457	None:intergenic	40.0%
	CTATGCGTCGTGATTTACGT+TGG	-	chr4.4:77642364-77642383	MS.gene50301:CDS	45.0%
!	AAACTTGCTCGTTGTCACCA+GGG	+	chr4.4:77642782-77642801	None:intergenic	45.0%
!	ATGGGCTGTGGACTATGATA+AGG	-	chr4.4:77642503-77642522	MS.gene50301:CDS	45.0%
!	ATTTCTCAGTCTATGGGCTG+TGG	-	chr4.4:77642491-77642510	MS.gene50301:CDS	45.0%
!	TAAACTTGCTCGTTGTCACC+AGG	+	chr4.4:77642783-77642802	None:intergenic	45.0%
!	TTGTTTGAGATGCCTCTTCC+AGG	-	chr4.4:77642423-77642442	MS.gene50301:CDS	45.0%
!!	CTATTAAGGCATCGCTCCTT+CGG	-	chr4.4:77642708-77642727	MS.gene50301:CDS	45.0%
	GAGTCTCTACTTTCACTCCC+TGG	-	chr4.4:77642762-77642781	MS.gene50301:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	77642360	77642803	77642360	ID=MS.gene50301
chr4.4	mRNA	77642360	77642803	77642360	ID=MS.gene50301.t1;Parent=MS.gene50301
chr4.4	exon	77642360	77642803	77642360	ID=MS.gene50301.t1.exon1;Parent=MS.gene50301.t1
chr4.4	CDS	77642360	77642803	77642360	ID=cds.MS.gene50301.t1;Parent=MS.gene50301.t1

Gene Sequence

>MS.gene50301

ATGGCTATGCGTCGTGATTTACGTTGGAATGTAATTGTTGCCTTTGATTTAACGGAAAGGAAATTGTTTGAGATGCCTCTTCCAGGTGATTTTAACCATTTACTTAATTCTGGTTTTTGGGTATTTGGAGAATTTCTCAGTCTATGGGCTGTGGACTATGATAAGGATACAGTTGAAATATGGGTGATGAAAGAATACAAAGTGCATTCGTCTTGGAATAAAATTCTTGTTCTTTCTGTTCATGCCATTCCTGATCGCTATTTTCACCCTATGTACTCCACAAAAAATGGTGATATTATCGGAGGAAATCTTAATTCTAGATTGGTCAAGTATAATGATAAAGGACAGCTATTAAGGCATCGCTCCTTCGGTAATAGTCAATCCGATGTTGTCATGTATACAGAGTCTCTACTTTCACTCCCTGGTGACAACGAGCAAGTTTAA

Protein sequence

>MS.gene50301.t1

MAMRRDLRWNVIVAFDLTERKLFEMPLPGDFNHLLNSGFWVFGEFLSLWAVDYDKDTVEIWVMKEYKVHSSWNKILVLSVHAIPDRYFHPMYSTKNGDIIGGNLNSRLVKYNDKGQLLRHRSFGNSQSDVVMYTESLLSLPGDNEQV