Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030114.t1 | RHN64404.1 | 85.1 | 148 | 22 | 0 | 1 | 148 | 59 | 206 | 7.70E-67 | 263.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030114.t1 | G7JPY9 | 85.1 | 148 | 22 | 0 | 1 | 148 | 223 | 370 | 5.5e-67 | 263.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030114.t1 | MTR_4g122850 | 83.871 | 155 | 25 | 0 | 1 | 155 | 223 | 377 | 4.55e-90 | 271 |
| MS.gene030114.t1 | MTR_4g094365 | 65.972 | 144 | 46 | 3 | 1 | 142 | 222 | 364 | 1.39e-55 | 182 |
| MS.gene030114.t1 | MTR_6g060650 | 63.889 | 144 | 44 | 6 | 1 | 141 | 234 | 372 | 2.68e-49 | 166 |
| MS.gene030114.t1 | MTR_3g034180 | 63.636 | 143 | 47 | 5 | 1 | 142 | 351 | 489 | 8.98e-48 | 164 |
| MS.gene030114.t1 | MTR_8g433040 | 64.539 | 141 | 45 | 4 | 3 | 142 | 228 | 364 | 2.03e-45 | 155 |
| MS.gene030114.t1 | MTR_8g032380 | 64.539 | 141 | 45 | 4 | 3 | 142 | 228 | 364 | 2.03e-45 | 155 |
| MS.gene030114.t1 | MTR_3g103020 | 63.194 | 144 | 47 | 5 | 1 | 141 | 237 | 377 | 2.93e-45 | 155 |
| MS.gene030114.t1 | MTR_4g116320 | 60.714 | 140 | 49 | 5 | 3 | 139 | 119 | 255 | 2.27e-44 | 150 |
| MS.gene030114.t1 | MTR_4g117720 | 61.644 | 146 | 46 | 7 | 3 | 141 | 235 | 377 | 9.49e-44 | 151 |
| MS.gene030114.t1 | MTR_8g433030 | 63.504 | 137 | 44 | 5 | 3 | 137 | 205 | 337 | 1.40e-43 | 150 |
| MS.gene030114.t1 | MTR_4g116330 | 58.741 | 143 | 53 | 5 | 3 | 141 | 239 | 379 | 2.26e-43 | 150 |
| MS.gene030114.t1 | MTR_8g032390 | 63.504 | 137 | 44 | 5 | 3 | 137 | 238 | 370 | 4.09e-43 | 150 |
| MS.gene030114.t1 | MTR_8g040935 | 58.741 | 143 | 53 | 5 | 3 | 141 | 67 | 207 | 1.52e-42 | 144 |
| MS.gene030114.t1 | MTR_4g109280 | 61.111 | 144 | 49 | 6 | 1 | 141 | 219 | 358 | 2.20e-42 | 147 |
| MS.gene030114.t1 | MTR_4g109270 | 59.859 | 142 | 51 | 5 | 3 | 141 | 225 | 363 | 8.37e-42 | 146 |
| MS.gene030114.t1 | MTR_5g097210 | 54.305 | 151 | 66 | 3 | 3 | 153 | 227 | 374 | 4.06e-41 | 144 |
| MS.gene030114.t1 | MTR_1g055175 | 52.817 | 142 | 62 | 4 | 2 | 141 | 62 | 200 | 1.89e-40 | 138 |
| MS.gene030114.t1 | MTR_4g117870 | 54.348 | 138 | 56 | 2 | 5 | 142 | 137 | 267 | 5.06e-40 | 139 |
| MS.gene030114.t1 | MTR_1g055165 | 52.817 | 142 | 62 | 4 | 2 | 141 | 179 | 317 | 4.68e-39 | 138 |
| MS.gene030114.t1 | MTR_3g034130 | 58.140 | 129 | 50 | 4 | 1 | 128 | 237 | 362 | 5.72e-38 | 136 |
| MS.gene030114.t1 | MTR_4g117770 | 54.861 | 144 | 60 | 4 | 3 | 142 | 225 | 367 | 3.04e-36 | 132 |
| MS.gene030114.t1 | MTR_4g117810 | 54.861 | 144 | 60 | 4 | 3 | 142 | 225 | 367 | 3.04e-36 | 132 |
| MS.gene030114.t1 | MTR_1g055195 | 52.027 | 148 | 65 | 5 | 3 | 148 | 341 | 484 | 3.23e-36 | 134 |
| MS.gene030114.t1 | MTR_3g034160 | 59.574 | 141 | 52 | 5 | 3 | 142 | 239 | 375 | 4.38e-36 | 131 |
| MS.gene030114.t1 | MTR_4g117780 | 54.167 | 144 | 61 | 4 | 3 | 142 | 225 | 367 | 5.76e-36 | 131 |
| MS.gene030114.t1 | MTR_4g023380 | 49.701 | 167 | 52 | 8 | 3 | 142 | 218 | 379 | 1.57e-34 | 127 |
| MS.gene030114.t1 | MTR_4g118360 | 58.772 | 114 | 42 | 4 | 30 | 141 | 15 | 125 | 2.47e-34 | 120 |
| MS.gene030114.t1 | MTR_4g023130 | 57.746 | 142 | 51 | 7 | 3 | 141 | 177 | 312 | 4.69e-34 | 124 |
| MS.gene030114.t1 | MTR_6g463430 | 51.389 | 144 | 62 | 5 | 1 | 142 | 65 | 202 | 1.36e-33 | 120 |
| MS.gene030114.t1 | MTR_4g023090 | 50.314 | 159 | 55 | 9 | 3 | 142 | 233 | 386 | 1.55e-33 | 125 |
| MS.gene030114.t1 | MTR_4g117850 | 56.204 | 137 | 53 | 6 | 3 | 135 | 240 | 373 | 2.53e-33 | 124 |
| MS.gene030114.t1 | MTR_4g122860 | 52.518 | 139 | 56 | 5 | 20 | 152 | 196 | 330 | 2.78e-33 | 123 |
| MS.gene030114.t1 | MTR_4g122860 | 77.551 | 49 | 8 | 1 | 164 | 212 | 8 | 53 | 8.61e-17 | 78.6 |
| MS.gene030114.t1 | MTR_4g023080 | 55.634 | 142 | 54 | 7 | 3 | 141 | 218 | 353 | 1.70e-32 | 121 |
| MS.gene030114.t1 | MTR_4g118380 | 58.400 | 125 | 39 | 6 | 1 | 115 | 236 | 357 | 6.64e-32 | 120 |
| MS.gene030114.t1 | MTR_4g118400 | 55.072 | 138 | 44 | 7 | 1 | 136 | 173 | 294 | 2.76e-31 | 117 |
| MS.gene030114.t1 | MTR_1g055135 | 48.966 | 145 | 66 | 5 | 2 | 141 | 233 | 374 | 2.84e-31 | 119 |
| MS.gene030114.t1 | MTR_4g023190 | 53.425 | 146 | 54 | 9 | 3 | 140 | 218 | 357 | 1.23e-30 | 116 |
| MS.gene030114.t1 | MTR_5g023000 | 62.637 | 91 | 32 | 2 | 52 | 141 | 9 | 98 | 1.67e-30 | 109 |
| MS.gene030114.t1 | MTR_4g023070 | 49.032 | 155 | 58 | 7 | 3 | 141 | 220 | 369 | 1.98e-30 | 116 |
| MS.gene030114.t1 | MTR_4g021785 | 54.930 | 142 | 55 | 7 | 3 | 141 | 219 | 354 | 2.38e-30 | 115 |
| MS.gene030114.t1 | MTR_4g023150 | 53.425 | 146 | 54 | 9 | 3 | 140 | 219 | 358 | 1.06e-29 | 114 |
| MS.gene030114.t1 | MTR_4g118370 | 48.872 | 133 | 64 | 4 | 6 | 138 | 128 | 256 | 2.80e-29 | 110 |
| MS.gene030114.t1 | MTR_4g117750 | 58.182 | 110 | 43 | 3 | 33 | 140 | 373 | 481 | 3.63e-29 | 114 |
| MS.gene030114.t1 | MTR_4g117750 | 45.946 | 148 | 71 | 4 | 1 | 142 | 215 | 359 | 1.28e-24 | 102 |
| MS.gene030114.t1 | MTR_4g023200 | 52.055 | 146 | 56 | 9 | 3 | 140 | 219 | 358 | 5.67e-29 | 112 |
| MS.gene030114.t1 | MTR_4g023120 | 48.077 | 156 | 60 | 7 | 3 | 142 | 220 | 370 | 5.93e-29 | 112 |
| MS.gene030114.t1 | MTR_1g055250 | 42.857 | 154 | 83 | 5 | 2 | 155 | 131 | 279 | 3.03e-27 | 107 |
| MS.gene030114.t1 | MTR_5g070130 | 48.980 | 147 | 67 | 7 | 3 | 144 | 236 | 379 | 7.91e-26 | 104 |
| MS.gene030114.t1 | MTR_5g070080 | 51.079 | 139 | 63 | 5 | 1 | 137 | 245 | 380 | 1.35e-25 | 103 |
| MS.gene030114.t1 | MTR_4g116330 | 53.097 | 113 | 48 | 4 | 33 | 141 | 229 | 340 | 4.49e-25 | 101 |
| MS.gene030114.t1 | MTR_5g070088 | 47.857 | 140 | 68 | 5 | 1 | 137 | 243 | 380 | 6.09e-25 | 102 |
| MS.gene030114.t1 | MTR_8g102520 | 42.958 | 142 | 74 | 6 | 3 | 141 | 184 | 321 | 6.01e-24 | 98.2 |
| MS.gene030114.t1 | MTR_7g079450 | 44.366 | 142 | 72 | 7 | 1 | 141 | 1 | 136 | 8.83e-24 | 93.2 |
| MS.gene030114.t1 | MTR_4g023440 | 55.670 | 97 | 37 | 4 | 48 | 142 | 240 | 332 | 8.91e-23 | 95.1 |
| MS.gene030114.t1 | MTR_7g079400 | 41.781 | 146 | 74 | 6 | 3 | 141 | 195 | 336 | 1.42e-20 | 89.4 |
| MS.gene030114.t1 | MTR_4g117530 | 52.632 | 95 | 38 | 4 | 49 | 141 | 163 | 252 | 8.78e-20 | 85.5 |
| MS.gene030114.t1 | MTR_7g117720 | 56.044 | 91 | 34 | 3 | 51 | 136 | 182 | 271 | 6.50e-19 | 83.6 |
| MS.gene030114.t1 | MTR_4g122840 | 43.066 | 137 | 40 | 6 | 8 | 142 | 164 | 264 | 7.86e-18 | 80.5 |
| MS.gene030114.t1 | MTR_8g013005 | 66.102 | 59 | 19 | 1 | 83 | 141 | 1 | 58 | 1.04e-17 | 75.1 |
| MS.gene030114.t1 | MTR_8g098830 | 44.348 | 115 | 57 | 6 | 3 | 115 | 89 | 198 | 1.88e-17 | 79.0 |
| MS.gene030114.t1 | MTR_7g079370 | 42.754 | 138 | 73 | 6 | 1 | 136 | 217 | 350 | 3.12e-17 | 80.1 |
| MS.gene030114.t1 | MTR_4g121580 | 44.068 | 118 | 49 | 7 | 19 | 132 | 235 | 339 | 1.34e-14 | 72.8 |
| MS.gene030114.t1 | MTR_4g114700 | 53.571 | 84 | 32 | 4 | 55 | 133 | 137 | 218 | 1.21e-13 | 68.6 |
| MS.gene030114.t1 | MTR_4g023430 | 53.012 | 83 | 32 | 4 | 65 | 142 | 142 | 222 | 1.73e-13 | 67.8 |
| MS.gene030114.t1 | MTR_4g109290 | 64.151 | 53 | 18 | 1 | 89 | 141 | 136 | 187 | 5.66e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAGAATTTCTCAGTCTT+TGG | 0.205269 | 8.1:-8201247 | MS.gene030114:CDS |
| TATTGCGGTTTGTGGGTATT+TGG | 0.223766 | 8.1:-8201266 | MS.gene030114:CDS |
| CACTCTTTGTAGAGCATATA+GGG | 0.234683 | 8.1:+8201111 | None:intergenic |
| AATTGTTGCCTTTGATTTGA+TGG | 0.277898 | 8.1:-8201345 | MS.gene030114:CDS |
| ACAAAGAGTGGTGACATTAT+TGG | 0.289112 | 8.1:-8201098 | MS.gene030114:CDS |
| ATTGGAACAGATGGTGGTTC+TGG | 0.314767 | 8.1:-8201080 | MS.gene030114:CDS |
| TGGAGAATTTCTCAGTCTTT+GGG | 0.343451 | 8.1:-8201246 | MS.gene030114:CDS |
| TAGGACAAGGTTTACAGTTC+AGG | 0.354801 | 8.1:-8199132 | MS.gene030114:intron |
| CCACTCTTTGTAGAGCATAT+AGG | 0.395958 | 8.1:+8201110 | None:intergenic |
| AACCGCAATATGTAGTTTGA+TGG | 0.396935 | 8.1:+8201279 | None:intergenic |
| ATTCCAAGTTGCATTCATCT+TGG | 0.407888 | 8.1:-8201181 | MS.gene030114:CDS |
| TCTCAGTCTTTGGGCTATGA+AGG | 0.418139 | 8.1:-8201237 | MS.gene030114:CDS |
| AAACTACATATTGCGGTTTG+TGG | 0.437699 | 8.1:-8201274 | MS.gene030114:CDS |
| GGATTGGTGAAATATTCTAA+TGG | 0.442441 | 8.1:-8201059 | MS.gene030114:CDS |
| CTCTGTATACATAGCCACTT+TGG | 0.447885 | 8.1:+8200986 | None:intergenic |
| TTGATGGAAAGGAAACTGTT+AGG | 0.456333 | 8.1:-8201329 | MS.gene030114:CDS |
| CTCAGTCTTTGGGCTATGAA+GGG | 0.456919 | 8.1:-8201236 | MS.gene030114:CDS |
| AACTACATATTGCGGTTTGT+GGG | 0.473166 | 8.1:-8201273 | MS.gene030114:CDS |
| GACGATGATGGAGGAGAAGA+TGG | 0.477751 | 8.1:-8199372 | MS.gene030114:CDS |
| GAGCATATAGGGGAAAAGTT+AGG | 0.478841 | 8.1:+8201122 | None:intergenic |
| TTTCCTTTCCATCAAATCAA+AGG | 0.490696 | 8.1:+8201337 | None:intergenic |
| TGAATTTGCTCATGGTCACC+AGG | 0.491110 | 8.1:+8200948 | None:intergenic |
| CATCTTTATGAATTTGCTCA+TGG | 0.492372 | 8.1:+8200940 | None:intergenic |
| GTCTAACCACAGTTGGATGC+TGG | 0.499144 | 8.1:-8198357 | MS.gene030114:CDS |
| TCCAACTGAATTGTTATAGT+AGG | 0.504691 | 8.1:+8201010 | None:intergenic |
| GTTTGATGGATAAAATCATC+AGG | 0.513173 | 8.1:+8201293 | None:intergenic |
| CATGATTCAGATGACGATGA+TGG | 0.518842 | 8.1:-8199384 | MS.gene030114:CDS |
| GGCGTAACATATTTCAAATG+TGG | 0.531690 | 8.1:-8201214 | MS.gene030114:CDS |
| TCCTACTATAACAATTCAGT+TGG | 0.538812 | 8.1:-8201011 | MS.gene030114:CDS |
| GAGTCTCTACTTTCACTCCC+TGG | 0.547203 | 8.1:-8200966 | MS.gene030114:CDS |
| GATGAATGTGAGGAAATTGA+AGG | 0.547568 | 8.1:-8199468 | MS.gene030114:CDS |
| GGACTAAGACTCTTGATCTA+CGG | 0.550298 | 8.1:-8201160 | MS.gene030114:CDS |
| ATCCATCAAACTACATATTG+CGG | 0.552718 | 8.1:-8201281 | MS.gene030114:CDS |
| TACCATCGTCTAACCACAGT+TGG | 0.554551 | 8.1:-8198364 | MS.gene030114:CDS |
| AACAGATGGTGGTTCTGGAT+TGG | 0.556410 | 8.1:-8201075 | MS.gene030114:CDS |
| TCAGTCTTTGGGCTATGAAG+GGG | 0.560298 | 8.1:-8201235 | MS.gene030114:CDS |
| TTGCCTTTGATTTGATGGAA+AGG | 0.562152 | 8.1:-8201340 | MS.gene030114:CDS |
| AGTCCAAGATGAATGCAACT+TGG | 0.565089 | 8.1:+8201178 | None:intergenic |
| TGGATAAAATCATCAGGAAG+AGG | 0.569512 | 8.1:+8201299 | None:intergenic |
| CCTATATGCTCTACAAAGAG+TGG | 0.572496 | 8.1:-8201110 | MS.gene030114:CDS |
| GCGTAACATATTTCAAATGT+GGG | 0.575536 | 8.1:-8201213 | MS.gene030114:CDS |
| CTGAATTGTTATAGTAGGAG+TGG | 0.580575 | 8.1:+8201015 | None:intergenic |
| ATGTTTATCAGGTAAGTGCA+AGG | 0.618376 | 8.1:-8199169 | MS.gene030114:intron |
| GGTGACATTATTGGAACAGA+TGG | 0.620913 | 8.1:-8201089 | MS.gene030114:CDS |
| GTAGGAGGAAGATGAATGTG+AGG | 0.621010 | 8.1:-8199478 | MS.gene030114:intron |
| GACATTATTGGAACAGATGG+TGG | 0.626070 | 8.1:-8201086 | MS.gene030114:CDS |
| GTTGGATGCTGGAACGTCGT+AGG | 0.635412 | 8.1:-8198346 | MS.gene030114:CDS |
| ATAAAATCATCAGGAAGAGG+AGG | 0.640290 | 8.1:+8201302 | None:intergenic |
| CAATTCAGTTGGATCCAAAG+TGG | 0.644141 | 8.1:-8201000 | MS.gene030114:CDS |
| GATTCAGATGACGATGATGG+AGG | 0.644307 | 8.1:-8199381 | MS.gene030114:CDS |
| ACTCTTTGTAGAGCATATAG+GGG | 0.650669 | 8.1:+8201112 | None:intergenic |
| GAATTTGCTCATGGTCACCA+GGG | 0.661249 | 8.1:+8200949 | None:intergenic |
| CAATGATGATGACAATGAGA+AGG | 0.673231 | 8.1:-8199442 | MS.gene030114:CDS |
| TGATGACAATGAGAAGGCTG+AGG | 0.682895 | 8.1:-8199436 | MS.gene030114:CDS |
| ATCCAACTGTGGTTAGACGA+TGG | 0.689241 | 8.1:+8198362 | None:intergenic |
| GACGTTCCAGCATCCAACTG+TGG | 0.702524 | 8.1:+8198351 | None:intergenic |
| ACTGCTGCAGAGACTAACAG+AGG | 0.727701 | 8.1:-8198319 | MS.gene030114:CDS |
| TGACACAAACAAGAAGAACG+AGG | 0.756690 | 8.1:-8200919 | MS.gene030114:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATAAATATAAATAAAA+TGG | + | chr8.1:8198780-8198799 | None:intergenic | 0.0% |
| !! | GATAAAATGAAATTAATTTA+AGG | + | chr8.1:8201046-8201065 | None:intergenic | 10.0% |
| !! | AAAGTATAAAATTCTGTAAT+TGG | - | chr8.1:8199796-8199815 | MS.gene030114:intron | 15.0% |
| !! | AAATATAAATAAAATGGTGA+AGG | + | chr8.1:8198774-8198793 | None:intergenic | 15.0% |
| !! | AAGTATAAAATTCTGTAATT+GGG | - | chr8.1:8199797-8199816 | MS.gene030114:intron | 15.0% |
| !! | ATAAAAATATCTACTTAGAA+AGG | + | chr8.1:8200676-8200695 | None:intergenic | 15.0% |
| !! | ATTAAATGCTTATATCAAAA+AGG | + | chr8.1:8200649-8200668 | None:intergenic | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr8.1:8199566-8199585 | MS.gene030114:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | + | chr8.1:8199585-8199566 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr8.1:8199565-8199584 | MS.gene030114:intron | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | + | chr8.1:8199584-8199565 | None:intergenic | 15.0% |
| !!! | ATATTGTATTTTTATCTCTT+GGG | - | chr8.1:8198800-8198819 | MS.gene030114:intron | 15.0% |
| !!! | ATTTAAAAAGCATATGTAAA+TGG | + | chr8.1:8201115-8201134 | None:intergenic | 15.0% |
| !!! | CTTTTTAAATTTCAAATGTA+TGG | - | chr8.1:8201125-8201144 | MS.gene030114:CDS | 15.0% |
| !!! | GAATTTTATACTTTAAAAGA+AGG | + | chr8.1:8199790-8199809 | None:intergenic | 15.0% |
| !!! | TATATTGTATTTTTATCTCT+TGG | - | chr8.1:8198799-8198818 | MS.gene030114:intron | 15.0% |
| !! | GAAAACTAAAATAAACGTAT+GGG | + | chr8.1:8199394-8199413 | None:intergenic | 20.0% |
| !! | TGAAAACTAAAATAAACGTA+TGG | + | chr8.1:8199395-8199414 | None:intergenic | 20.0% |
| !! | TTAAACATTTCACAACATAT+TGG | + | chr8.1:8198898-8198917 | None:intergenic | 20.0% |
| !! | TTAGGAATCAATAGAATAAA+GGG | + | chr8.1:8199887-8199906 | None:intergenic | 20.0% |
| !! | TTGAAACTTTCAAAACATAA+GGG | + | chr8.1:8199365-8199384 | None:intergenic | 20.0% |
| !!! | AAATTAGTTTTTTTTCTTCC+TGG | + | chr8.1:8199064-8199083 | None:intergenic | 20.0% |
| !!! | CATGTTTTTTTTGTCTTATT+TGG | - | chr8.1:8201089-8201108 | MS.gene030114:CDS | 20.0% |
| !!! | GTTGCTATATTGTATTTTTA+TGG | - | chr8.1:8200440-8200459 | MS.gene030114:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+CGG | + | chr8.1:8199357-8199338 | None:intergenic | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | - | chr8.1:8199338-8199357 | MS.gene030114:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr8.1:8199357-8199338 | None:intergenic | 20.0% |
| !!! | TGAAAACTTTTAAAACGTAA+GGG | - | chr8.1:8199656-8199675 | MS.gene030114:intron | 20.0% |
| !!! | TTGAAAACTTTTAAAACGTA+AGG | - | chr8.1:8199655-8199674 | MS.gene030114:intron | 20.0% |
| !!! | TTTGTTTTTCAAAAAGCTAA+AGG | - | chr8.1:8201011-8201030 | MS.gene030114:CDS | 20.0% |
| !!! | TTTTATATGGTAAACTAATC+TGG | - | chr8.1:8198947-8198966 | MS.gene030114:intron | 20.0% |
| ! | AATTTGTATTATGCAAGTCA+TGG | + | chr8.1:8200028-8200047 | None:intergenic | 25.0% |
| ! | ACAAACAATTTGTGAAAGAA+AGG | + | chr8.1:8200157-8200176 | None:intergenic | 25.0% |
| ! | ATAGTTTAATTGCAATATGC+AGG | + | chr8.1:8200979-8200998 | None:intergenic | 25.0% |
| ! | CAAACAATTTGTGAAAGAAA+GGG | + | chr8.1:8200156-8200175 | None:intergenic | 25.0% |
| ! | CTTGAAACTTTCAAAACATA+AGG | + | chr8.1:8199366-8199385 | None:intergenic | 25.0% |
| ! | GTTAGGAATCAATAGAATAA+AGG | + | chr8.1:8199888-8199907 | None:intergenic | 25.0% |
| ! | TAAATTCAGCAATTCTGTTT+CGG | - | chr8.1:8201167-8201186 | MS.gene030114:CDS | 25.0% |
| ! | TAACTAATAAAGTGATATCG+TGG | - | chr8.1:8200710-8200729 | MS.gene030114:intron | 25.0% |
| ! | TAGGAATCAATAGAATAAAG+GGG | + | chr8.1:8199886-8199905 | None:intergenic | 25.0% |
| ! | TAGTTTAATTGCAATATGCA+GGG | + | chr8.1:8200978-8200997 | None:intergenic | 25.0% |
| ! | TGCAAAGAGAAACAAAAAAT+AGG | - | chr8.1:8200859-8200878 | MS.gene030114:intron | 25.0% |
| ! | TTAGGTTTACTATGTTTATC+AGG | - | chr8.1:8200473-8200492 | MS.gene030114:intron | 25.0% |
| ! | TTCTTTCACAAATTGTTTGT+AGG | - | chr8.1:8200157-8200176 | MS.gene030114:intron | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | - | chr8.1:8199626-8199645 | MS.gene030114:intron | 25.0% |
| !! | ACAGCGAATTTTTCATTATA+AGG | - | chr8.1:8200815-8200834 | MS.gene030114:intron | 25.0% |
| !! | TTTTATGGTGCAGTATTATT+AGG | - | chr8.1:8200455-8200474 | MS.gene030114:intron | 25.0% |
| !!! | AAATTTTAGTGGACTCTTAA+CGG | - | chr8.1:8199011-8199030 | MS.gene030114:intron | 25.0% |
| !!! | ATGTTTTGAAAGTTTCAAGT+TGG | - | chr8.1:8199367-8199386 | MS.gene030114:CDS | 25.0% |
| !!! | CGTTTTAAAAGTTTTCAAGT+TGG | + | chr8.1:8199653-8199672 | None:intergenic | 25.0% |
| !!! | CTGCTTGAAATTGTTTTATA+TGG | - | chr8.1:8198934-8198953 | MS.gene030114:intron | 25.0% |
| !!! | GAATGTTTTTAAAGGACAAA+TGG | + | chr8.1:8200383-8200402 | None:intergenic | 25.0% |
| !!! | GTTTTGTTCTCAAATTTTAG+TGG | - | chr8.1:8199000-8199019 | MS.gene030114:intron | 25.0% |
| AAATTCAGCAATTCTGTTTC+GGG | - | chr8.1:8201168-8201187 | MS.gene030114:CDS | 30.0% | |
| AATCCAAACTATGCCAATAA+AGG | + | chr8.1:8199962-8199981 | None:intergenic | 30.0% | |
| ATCCATCAAACTACATATTG+CGG | - | chr8.1:8198372-8198391 | MS.gene030114:CDS | 30.0% | |
| ATTCCTTTATTGGCATAGTT+TGG | - | chr8.1:8199956-8199975 | MS.gene030114:intron | 30.0% | |
| ATTGCTGAATTTATCTTCGT+CGG | + | chr8.1:8201160-8201179 | None:intergenic | 30.0% | |
| CTTGAAACTTTCAAAACGTA+AGG | - | chr8.1:8199625-8199644 | MS.gene030114:intron | 30.0% | |
| GCGTAACATATTTCAAATGT+GGG | - | chr8.1:8198440-8198459 | MS.gene030114:intron | 30.0% | |
| GGATGTAATTGTAACAAGTT+AGG | + | chr8.1:8199905-8199924 | None:intergenic | 30.0% | |
| GGTTAATTTATGCATGTTGA+AGG | - | chr8.1:8198968-8198987 | MS.gene030114:intron | 30.0% | |
| TCAATTTAATGAGCAATGCT+TGG | - | chr8.1:8199083-8199102 | MS.gene030114:intron | 30.0% | |
| TCCAACTGAATTGTTATAGT+AGG | + | chr8.1:8198646-8198665 | None:intergenic | 30.0% | |
| TCCTACTATAACAATTCAGT+TGG | - | chr8.1:8198642-8198661 | MS.gene030114:intron | 30.0% | |
| TGCAAACTTAAGTAGAGAAA+AGG | + | chr8.1:8199244-8199263 | None:intergenic | 30.0% | |
| TGTGATACTCTAGTAATTCA+TGG | - | chr8.1:8200409-8200428 | MS.gene030114:intron | 30.0% | |
| TTAAGGCTTAATTGCATGTT+TGG | - | chr8.1:8199307-8199326 | MS.gene030114:intron | 30.0% | |
| TTGAAACTTTCAAAGCGTAA+GGG | + | chr8.1:8199425-8199444 | None:intergenic | 30.0% | |
| TTTCACAAATTGTTTGTAGG+AGG | - | chr8.1:8200160-8200179 | MS.gene030114:intron | 30.0% | |
| TTTCCTTTCCATCAAATCAA+AGG | + | chr8.1:8198319-8198338 | None:intergenic | 30.0% | |
| ! | AACCTATGTTTGGGTTAATT+TGG | - | chr8.1:8199836-8199855 | MS.gene030114:intron | 30.0% |
| ! | CATCTTTATGAATTTGCTCA+TGG | + | chr8.1:8198716-8198735 | None:intergenic | 30.0% |
| ! | CTTCATTGAATTAAGAGCAT+CGG | + | chr8.1:8199155-8199174 | None:intergenic | 30.0% |
| ! | GGATTGGTGAAATATTCTAA+TGG | - | chr8.1:8198594-8198613 | MS.gene030114:intron | 30.0% |
| ! | GTTTGATGGATAAAATCATC+AGG | + | chr8.1:8198363-8198382 | None:intergenic | 30.0% |
| ! | TATTGAAGTTCTGGTAGAAA+AGG | + | chr8.1:8199926-8199945 | None:intergenic | 30.0% |
| !! | AATTGTTGCCTTTGATTTGA+TGG | - | chr8.1:8198308-8198327 | MS.gene030114:CDS | 30.0% |
| !! | TTCTTGTACTCTGAAATTGT+TGG | - | chr8.1:8200594-8200613 | MS.gene030114:intron | 30.0% |
| !! | TTGTATTTTTATCTCTTGGG+TGG | - | chr8.1:8198803-8198822 | MS.gene030114:intron | 30.0% |
| !!! | ACGTTTTGAAAGTTTCAAGT+TGG | + | chr8.1:8199624-8199643 | None:intergenic | 30.0% |
| !!! | CATCTCTGGAATGTTTTTAA+AGG | + | chr8.1:8200391-8200410 | None:intergenic | 30.0% |
| !!! | CTAGAGGTATCATTCTTTTA+AGG | - | chr8.1:8199290-8199309 | MS.gene030114:intron | 30.0% |
| AAACTACATATTGCGGTTTG+TGG | - | chr8.1:8198379-8198398 | MS.gene030114:CDS | 35.0% | |
| AACCGCAATATGTAGTTTGA+TGG | + | chr8.1:8198377-8198396 | None:intergenic | 35.0% | |
| AACTACATATTGCGGTTTGT+GGG | - | chr8.1:8198380-8198399 | MS.gene030114:CDS | 35.0% | |
| AATTCAGCAATTCTGTTTCG+GGG | - | chr8.1:8201169-8201188 | MS.gene030114:CDS | 35.0% | |
| ACAAAGAGTGGTGACATTAT+TGG | - | chr8.1:8198555-8198574 | MS.gene030114:intron | 35.0% | |
| ACTCTTTGTAGAGCATATAG+GGG | + | chr8.1:8198544-8198563 | None:intergenic | 35.0% | |
| AGAAGGCTTAATTGCATGTT+TGG | + | chr8.1:8199773-8199792 | None:intergenic | 35.0% | |
| AGTCCACTATATTGAAGTTC+TGG | + | chr8.1:8199935-8199954 | None:intergenic | 35.0% | |
| AGTGCAAGGTTAAAAACATG+TGG | - | chr8.1:8200498-8200517 | MS.gene030114:intron | 35.0% | |
| ATAAAATCATCAGGAAGAGG+AGG | + | chr8.1:8198354-8198373 | None:intergenic | 35.0% | |
| ATGTTTATCAGGTAAGTGCA+AGG | - | chr8.1:8200484-8200503 | MS.gene030114:intron | 35.0% | |
| ATTCCAAGTTGCATTCATCT+TGG | - | chr8.1:8198472-8198491 | MS.gene030114:intron | 35.0% | |
| CAAGGTTAAAAACATGTGGT+AGG | - | chr8.1:8200502-8200521 | MS.gene030114:intron | 35.0% | |
| CACTCTTTGTAGAGCATATA+GGG | + | chr8.1:8198545-8198564 | None:intergenic | 35.0% | |
| CATGCAAATACTTCACACTA+AGG | + | chr8.1:8201250-8201269 | None:intergenic | 35.0% | |
| CTACCAGAACTTCAATATAG+TGG | - | chr8.1:8199929-8199948 | MS.gene030114:intron | 35.0% | |
| CTGAATTGTTATAGTAGGAG+TGG | + | chr8.1:8198641-8198660 | None:intergenic | 35.0% | |
| CTTGAAACTTTCAAAGCGTA+AGG | + | chr8.1:8199426-8199445 | None:intergenic | 35.0% | |
| GATGAATGTGAGGAAATTGA+AGG | - | chr8.1:8200185-8200204 | MS.gene030114:intron | 35.0% | |
| GGACAAACTCTATCATTTAG+AGG | + | chr8.1:8200321-8200340 | None:intergenic | 35.0% | |
| GGCGTAACATATTTCAAATG+TGG | - | chr8.1:8198439-8198458 | MS.gene030114:intron | 35.0% | |
| GTATTATGCAAGTCATGGTT+TGG | + | chr8.1:8200023-8200042 | None:intergenic | 35.0% | |
| TAAAAACATGTGGTAGGACA+AGG | - | chr8.1:8200508-8200527 | MS.gene030114:intron | 35.0% | |
| TAACCCAAACATAGGTTCAT+GGG | + | chr8.1:8199833-8199852 | None:intergenic | 35.0% | |
| TGCATGTTGAAGGAAAAAGA+AGG | - | chr8.1:8198978-8198997 | MS.gene030114:intron | 35.0% | |
| TGCCAAATTAACCCAAACAT+AGG | + | chr8.1:8199841-8199860 | None:intergenic | 35.0% | |
| TGGAGAATTTCTCAGTCTTT+GGG | - | chr8.1:8198407-8198426 | MS.gene030114:intron | 35.0% | |
| TGGATAAAATCATCAGGAAG+AGG | + | chr8.1:8198357-8198376 | None:intergenic | 35.0% | |
| TTAACCCAAACATAGGTTCA+TGG | + | chr8.1:8199834-8199853 | None:intergenic | 35.0% | |
| TTATCTTCCACCCATTTCTT+AGG | - | chr8.1:8200547-8200566 | MS.gene030114:intron | 35.0% | |
| TTGATGGAAAGGAAACTGTT+AGG | - | chr8.1:8198324-8198343 | MS.gene030114:CDS | 35.0% | |
| TTGGAGAATTTCTCAGTCTT+TGG | - | chr8.1:8198406-8198425 | MS.gene030114:intron | 35.0% | |
| ! | ATAGGCAAACTTACGTTTTC+TGG | - | chr8.1:8200877-8200896 | MS.gene030114:intron | 35.0% |
| ! | CAATGATGATGACAATGAGA+AGG | - | chr8.1:8200211-8200230 | MS.gene030114:intron | 35.0% |
| ! | CTTAGTGTGAAGTATTTGCA+TGG | - | chr8.1:8201248-8201267 | MS.gene030114:CDS | 35.0% |
| ! | TTACTAGAGTATCACATCTC+TGG | + | chr8.1:8200405-8200424 | None:intergenic | 35.0% |
| ! | TTGTCTGACCTCTTTCTTTT+TGG | + | chr8.1:8200248-8200267 | None:intergenic | 35.0% |
| !! | AGGACAAATGGTGTTATGTT+TGG | + | chr8.1:8200371-8200390 | None:intergenic | 35.0% |
| !! | TAGTGGACTCATTCCTTTAT+TGG | - | chr8.1:8199946-8199965 | MS.gene030114:intron | 35.0% |
| !! | TTGCCTTTGATTTGATGGAA+AGG | - | chr8.1:8198313-8198332 | MS.gene030114:CDS | 35.0% |
| ACATATTGGATCAGCTTGTG+TGG | + | chr8.1:8198884-8198903 | None:intergenic | 40.0% | |
| ACATCTACCCACCTAAGAAA+TGG | + | chr8.1:8200561-8200580 | None:intergenic | 40.0% | |
| ACCAGTTCTTCAGCAAAGAA+TGG | + | chr8.1:8200342-8200361 | None:intergenic | 40.0% | |
| AGGTTGCACCAAAAAGAAAG+AGG | - | chr8.1:8200237-8200256 | MS.gene030114:intron | 40.0% | |
| AGTCCAAGATGAATGCAACT+TGG | + | chr8.1:8198478-8198497 | None:intergenic | 40.0% | |
| ATCTGGATGAGACTGTGTAA+CGG | - | chr8.1:8201211-8201230 | MS.gene030114:CDS | 40.0% | |
| ATTCGCTGTTCACTATATGC+TGG | + | chr8.1:8200804-8200823 | None:intergenic | 40.0% | |
| CAAGTCGGTCCAAAACATAA+GGG | + | chr8.1:8199547-8199566 | None:intergenic | 40.0% | |
| CAATTCAGTTGGATCCAAAG+TGG | - | chr8.1:8198653-8198672 | MS.gene030114:intron | 40.0% | |
| CATCTACCCACCTAAGAAAT+GGG | + | chr8.1:8200560-8200579 | None:intergenic | 40.0% | |
| CATGATTCAGATGACGATGA+TGG | - | chr8.1:8200269-8200288 | MS.gene030114:intron | 40.0% | |
| CCACTCTTTGTAGAGCATAT+AGG | + | chr8.1:8198546-8198565 | None:intergenic | 40.0% | |
| CCTATATGCTCTACAAAGAG+TGG | - | chr8.1:8198543-8198562 | MS.gene030114:intron | 40.0% | |
| CTCTGTATACATAGCCACTT+TGG | + | chr8.1:8198670-8198689 | None:intergenic | 40.0% | |
| GACATTATTGGAACAGATGG+TGG | - | chr8.1:8198567-8198586 | MS.gene030114:intron | 40.0% | |
| GAGCATATAGGGGAAAAGTT+AGG | + | chr8.1:8198534-8198553 | None:intergenic | 40.0% | |
| GGACTAAGACTCTTGATCTA+CGG | - | chr8.1:8198493-8198512 | MS.gene030114:intron | 40.0% | |
| GGTGACATTATTGGAACAGA+TGG | - | chr8.1:8198564-8198583 | MS.gene030114:intron | 40.0% | |
| TAGGACAAGGTTTACAGTTC+AGG | - | chr8.1:8200521-8200540 | MS.gene030114:intron | 40.0% | |
| TATTGCGGTTTGTGGGTATT+TGG | - | chr8.1:8198387-8198406 | MS.gene030114:intron | 40.0% | |
| TCAAGTCGGTCCAAAACATA+AGG | + | chr8.1:8199548-8199567 | None:intergenic | 40.0% | |
| TCAGTGAGAAATGCTACTAG+AGG | - | chr8.1:8199274-8199293 | MS.gene030114:intron | 40.0% | |
| TCATTTCTCTGTTGCAAACC+AGG | - | chr8.1:8199043-8199062 | MS.gene030114:intron | 40.0% | |
| TCCATTCTTTGCTGAAGAAC+TGG | - | chr8.1:8200338-8200357 | MS.gene030114:intron | 40.0% | |
| TCGTGGTGCGATTTCATTAA+CGG | - | chr8.1:8200727-8200746 | MS.gene030114:intron | 40.0% | |
| TGACACAAACAAGAAGAACG+AGG | - | chr8.1:8198734-8198753 | MS.gene030114:intron | 40.0% | |
| TGACCCATGAACCTATGTTT+GGG | - | chr8.1:8199827-8199846 | MS.gene030114:intron | 40.0% | |
| ! | GTGAAGTATTTGCATGGTAG+CGG | - | chr8.1:8201254-8201273 | MS.gene030114:CDS | 40.0% |
| ! | TGAAGTATTTGCATGGTAGC+GGG | - | chr8.1:8201255-8201274 | MS.gene030114:CDS | 40.0% |
| !!! | CAAGTTGGTCCCTTATGTTT+TGG | - | chr8.1:8199353-8199372 | MS.gene030114:intron | 40.0% |
| !!! | TTTTAGTGGACTCTTAACGG+TGG | - | chr8.1:8199014-8199033 | MS.gene030114:intron | 40.0% |
| ATCCAACTGTGGTTAGACGA+TGG | + | chr8.1:8201294-8201313 | None:intergenic | 45.0% | |
| CGTGGTGCGATTTCATTAAC+GGG | - | chr8.1:8200728-8200747 | MS.gene030114:intron | 45.0% | |
| CTCAGTCTTTGGGCTATGAA+GGG | - | chr8.1:8198417-8198436 | MS.gene030114:intron | 45.0% | |
| CTTCCACCCATTTCTTAGGT+GGG | - | chr8.1:8200551-8200570 | MS.gene030114:intron | 45.0% | |
| GATGAGACTGTGTAACGGTT+AGG | - | chr8.1:8201216-8201235 | MS.gene030114:CDS | 45.0% | |
| GTAGGAGGAAGATGAATGTG+AGG | - | chr8.1:8200175-8200194 | MS.gene030114:intron | 45.0% | |
| GTGACCCATGAACCTATGTT+TGG | - | chr8.1:8199826-8199845 | MS.gene030114:intron | 45.0% | |
| TACACAGTCTCATCCAGATC+TGG | + | chr8.1:8201210-8201229 | None:intergenic | 45.0% | |
| TACCATCGTCTAACCACAGT+TGG | - | chr8.1:8201289-8201308 | MS.gene030114:CDS | 45.0% | |
| TCAGTCTTTGGGCTATGAAG+GGG | - | chr8.1:8198418-8198437 | MS.gene030114:intron | 45.0% | |
| TCTCAGTCTTTGGGCTATGA+AGG | - | chr8.1:8198416-8198435 | MS.gene030114:intron | 45.0% | |
| TCTTCCACCCATTTCTTAGG+TGG | - | chr8.1:8200550-8200569 | MS.gene030114:intron | 45.0% | |
| TGATGACAATGAGAAGGCTG+AGG | - | chr8.1:8200217-8200236 | MS.gene030114:intron | 45.0% | |
| ! | ATTGGAACAGATGGTGGTTC+TGG | - | chr8.1:8198573-8198592 | MS.gene030114:intron | 45.0% |
| ! | CAAGTCATGGTTTGGAGTTC+TGG | + | chr8.1:8200015-8200034 | None:intergenic | 45.0% |
| ! | GAATTTGCTCATGGTCACCA+GGG | + | chr8.1:8198707-8198726 | None:intergenic | 45.0% |
| ! | GATTCAGATGACGATGATGG+AGG | - | chr8.1:8200272-8200291 | MS.gene030114:intron | 45.0% |
| ! | TCTTGGGTGGCTGCATTTTA+GGG | - | chr8.1:8198816-8198835 | MS.gene030114:intron | 45.0% |
| ! | TGAATTTGCTCATGGTCACC+AGG | + | chr8.1:8198708-8198727 | None:intergenic | 45.0% |
| !! | AACAGATGGTGGTTCTGGAT+TGG | - | chr8.1:8198578-8198597 | MS.gene030114:intron | 45.0% |
| ACTGCTGCAGAGACTAACAG+AGG | - | chr8.1:8201334-8201353 | MS.gene030114:CDS | 50.0% | |
| CTACCCACCTAAGAAATGGG+TGG | + | chr8.1:8200557-8200576 | None:intergenic | 50.0% | |
| GAGTCTCTACTTTCACTCCC+TGG | - | chr8.1:8198687-8198706 | MS.gene030114:intron | 50.0% | |
| GTCTAACCACAGTTGGATGC+TGG | - | chr8.1:8201296-8201315 | MS.gene030114:CDS | 50.0% | |
| ! | CTCTTGGGTGGCTGCATTTT+AGG | - | chr8.1:8198815-8198834 | MS.gene030114:intron | 50.0% |
| !! | GACGATGATGGAGGAGAAGA+TGG | - | chr8.1:8200281-8200300 | MS.gene030114:intron | 50.0% |
| CATCCAGATCTGGACCGACT+CGG | + | chr8.1:8201200-8201219 | None:intergenic | 55.0% | |
| GACGTTCCAGCATCCAACTG+TGG | + | chr8.1:8201305-8201324 | None:intergenic | 55.0% | |
| GTTGGATGCTGGAACGTCGT+AGG | - | chr8.1:8201307-8201326 | MS.gene030114:CDS | 55.0% | |
| GTTTCGGGGATGAACCGAGT+CGG | - | chr8.1:8201183-8201202 | MS.gene030114:CDS | 55.0% | |
| GAACCGAGTCGGTCCAGATC+TGG | - | chr8.1:8201194-8201213 | MS.gene030114:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 8198300 | 8201375 | 8198300 | ID=MS.gene030114 |
| chr8.1 | mRNA | 8198300 | 8201375 | 8198300 | ID=MS.gene030114.t1;Parent=MS.gene030114 |
| chr8.1 | exon | 8200920 | 8201375 | 8200920 | ID=MS.gene030114.t1.exon1;Parent=MS.gene030114.t1 |
| chr8.1 | CDS | 8200920 | 8201375 | 8200920 | ID=cds.MS.gene030114.t1;Parent=MS.gene030114.t1 |
| chr8.1 | exon | 8199365 | 8199496 | 8199365 | ID=MS.gene030114.t1.exon2;Parent=MS.gene030114.t1 |
| chr8.1 | CDS | 8199365 | 8199496 | 8199365 | ID=cds.MS.gene030114.t1;Parent=MS.gene030114.t1 |
| chr8.1 | exon | 8199133 | 8199180 | 8199133 | ID=MS.gene030114.t1.exon3;Parent=MS.gene030114.t1 |
| chr8.1 | CDS | 8199133 | 8199180 | 8199133 | ID=cds.MS.gene030114.t1;Parent=MS.gene030114.t1 |
| chr8.1 | exon | 8198300 | 8198401 | 8198300 | ID=MS.gene030114.t1.exon4;Parent=MS.gene030114.t1 |
| chr8.1 | CDS | 8198300 | 8198401 | 8198300 | ID=cds.MS.gene030114.t1;Parent=MS.gene030114.t1 |
| Gene Sequence |
| Protein sequence |
