AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43790.t1 MTR_5g070088 92.049 327 26 0 1 327 60 386 0.0 585
MS.gene43790.t1 MTR_5g070080 67.683 328 101 4 1 327 63 386 5.69e-140 401
MS.gene43790.t1 MTR_5g070130 61.377 334 102 4 1 327 64 377 1.01e-134 388
MS.gene43790.t1 MTR_3g103020 52.012 323 132 4 1 321 72 373 8.94e-98 294
MS.gene43790.t1 MTR_4g117720 49.699 332 132 9 4 326 72 377 5.36e-92 279
MS.gene43790.t1 MTR_5g097210 49.226 323 132 8 1 320 64 357 5.94e-89 271
MS.gene43790.t1 MTR_3g034160 48.036 331 136 10 7 326 69 374 1.31e-79 247
MS.gene43790.t1 MTR_3g034180 46.269 335 144 10 4 327 180 489 2.59e-79 250
MS.gene43790.t1 MTR_4g023080 44.795 317 133 7 11 323 73 351 2.01e-77 241
MS.gene43790.t1 MTR_1g055135 49.822 281 121 8 52 321 99 370 1.68e-76 239
MS.gene43790.t1 MTR_4g117750 46.988 332 129 9 1 320 57 353 7.33e-76 241
MS.gene43790.t1 MTR_4g117750 43.411 129 66 1 200 321 350 478 1.52e-19 89.4
MS.gene43790.t1 MTR_1g055195 45.289 329 138 10 15 326 174 477 2.87e-75 239
MS.gene43790.t1 MTR_4g109270 45.171 321 132 8 11 321 73 359 2.10e-74 233
MS.gene43790.t1 MTR_6g060650 44.479 326 148 7 5 320 65 367 8.92e-74 232
MS.gene43790.t1 MTR_4g023090 43.574 319 142 9 30 327 85 386 1.04e-72 230
MS.gene43790.t1 MTR_4g094365 46.644 298 140 8 33 320 70 358 4.83e-72 227
MS.gene43790.t1 MTR_3g034130 44.062 320 145 8 4 312 66 362 2.27e-71 226
MS.gene43790.t1 MTR_4g023130 48.327 269 117 6 60 324 61 311 2.60e-71 224
MS.gene43790.t1 MTR_4g109280 47.040 321 141 8 1 319 59 352 1.60e-70 223
MS.gene43790.t1 MTR_4g117850 46.497 314 135 8 11 319 88 373 6.23e-70 222
MS.gene43790.t1 MTR_4g122850 43.344 323 150 10 7 321 62 359 9.21e-68 217
MS.gene43790.t1 MTR_4g023120 41.590 327 153 7 11 324 67 368 6.04e-67 214
MS.gene43790.t1 MTR_4g023070 41.358 324 152 6 11 321 67 365 6.77e-67 214
MS.gene43790.t1 MTR_4g023190 42.453 318 139 10 11 321 74 354 8.22e-67 214
MS.gene43790.t1 MTR_8g433040 42.638 326 149 10 5 327 74 364 1.17e-66 213
MS.gene43790.t1 MTR_8g032380 42.638 326 149 10 5 327 74 364 1.17e-66 213
MS.gene43790.t1 MTR_4g118380 43.322 307 148 7 5 299 65 357 2.26e-66 213
MS.gene43790.t1 MTR_4g021785 41.693 319 143 8 11 324 73 353 1.30e-65 211
MS.gene43790.t1 MTR_7g079400 42.500 320 143 10 15 322 43 333 1.65e-65 210
MS.gene43790.t1 MTR_4g023150 41.905 315 146 9 11 321 74 355 3.76e-65 209
MS.gene43790.t1 MTR_4g117870 40.432 324 134 8 4 327 3 267 1.25e-64 205
MS.gene43790.t1 MTR_4g023200 41.066 319 143 10 11 321 74 355 1.55e-64 208
MS.gene43790.t1 MTR_4g117780 43.478 322 151 8 11 327 72 367 1.67e-64 208
MS.gene43790.t1 MTR_4g117770 43.963 323 148 9 11 327 72 367 2.23e-64 207
MS.gene43790.t1 MTR_4g117810 43.963 323 148 9 11 327 72 367 2.23e-64 207
MS.gene43790.t1 MTR_4g023380 39.496 357 140 11 1 327 69 379 6.38e-64 207
MS.gene43790.t1 MTR_4g118370 50.000 246 95 6 78 320 34 254 9.49e-64 202
MS.gene43790.t1 MTR_8g032390 48.302 265 126 7 63 322 113 371 9.86e-64 206
MS.gene43790.t1 MTR_4g116330 47.148 263 130 5 63 323 122 377 3.38e-63 205
MS.gene43790.t1 MTR_7g079370 41.337 329 155 8 8 322 48 352 1.48e-61 200
MS.gene43790.t1 MTR_4g023440 41.824 318 116 12 11 327 83 332 7.09e-60 195
MS.gene43790.t1 MTR_8g102520 46.215 251 122 8 78 322 75 318 1.01e-55 184
MS.gene43790.t1 MTR_4g118400 40.000 305 143 10 23 320 23 294 2.03e-55 182
MS.gene43790.t1 MTR_1g055250 51.185 211 89 8 104 308 49 251 1.76e-53 178
MS.gene43790.t1 MTR_8g433030 49.545 220 103 6 105 322 125 338 1.15e-51 174
MS.gene43790.t1 MTR_4g116320 50.000 214 101 4 109 320 43 252 1.84e-51 171
MS.gene43790.t1 MTR_8g013010 46.053 228 94 6 1 225 108 309 2.01e-51 172
MS.gene43790.t1 MTR_4g121580 39.550 311 145 10 17 319 67 342 1.16e-50 173
MS.gene43790.t1 MTR_1g055165 39.416 274 111 6 52 324 97 316 3.20e-49 167
MS.gene43790.t1 MTR_1g055175 48.168 191 92 5 134 320 8 195 1.98e-48 161
MS.gene43790.t1 MTR_4g116330 42.205 263 104 7 63 323 122 338 2.44e-47 163
MS.gene43790.t1 MTR_6g463430 45.098 204 107 1 120 323 1 199 1.23e-46 157
MS.gene43790.t1 MTR_2g048580 37.908 306 147 14 24 322 69 338 2.16e-43 152
MS.gene43790.t1 MTR_8g040935 44.444 207 106 6 120 321 1 203 2.12e-41 143
MS.gene43790.t1 MTR_7g079420 39.130 276 111 12 64 322 905 1140 2.51e-40 150
MS.gene43790.t1 MTR_4g117530 37.549 253 110 6 74 321 39 248 9.62e-38 135
MS.gene43790.t1 MTR_4g117430 45.399 163 74 5 65 225 3 152 1.97e-37 131
MS.gene43790.t1 MTR_4g114700 37.931 261 103 7 65 317 9 218 2.82e-37 134
MS.gene43790.t1 MTR_7g079450 49.286 140 63 4 184 322 1 133 7.09e-34 121
MS.gene43790.t1 MTR_7g117720 46.622 148 54 5 11 153 55 182 2.94e-29 113
MS.gene43790.t1 MTR_7g117720 51.000 100 44 3 225 320 173 271 1.38e-19 87.4
MS.gene43790.t1 MTR_8g098830 38.947 190 103 6 135 320 35 215 2.27e-28 110
MS.gene43790.t1 MTR_4g116340 45.185 135 65 3 62 190 116 247 9.31e-27 106
MS.gene43790.t1 MTR_4g118360 49.194 124 56 4 200 320 1 120 1.28e-26 102
MS.gene43790.t1 MTR_5g023000 56.818 88 38 0 234 321 7 94 3.58e-24 95.1
MS.gene43790.t1 MTR_4g133170 29.832 238 141 11 57 277 85 313 7.63e-20 89.7
MS.gene43790.t1 MTR_4g122860 32.796 186 94 4 139 320 156 314 8.01e-20 89.0
MS.gene43790.t1 MTR_6g034720 34.973 183 105 4 29 207 1 173 2.67e-19 85.1
MS.gene43790.t1 MTR_1g055200 50.602 83 39 1 61 143 5 85 3.42e-19 81.6
MS.gene43790.t1 MTR_2g026010 30.126 239 147 10 57 277 85 321 3.47e-19 87.8
MS.gene43790.t1 MTR_5g069120 38.514 148 61 4 6 143 50 177 7.02e-19 83.2
MS.gene43790.t1 MTR_2g028130 29.719 249 137 12 57 277 101 339 5.19e-18 84.3
MS.gene43790.t1 MTR_2g024110 26.423 246 162 7 62 294 93 332 6.34e-18 84.0
MS.gene43790.t1 MTR_2g028140 28.889 270 151 13 20 258 68 327 9.35e-18 84.0
MS.gene43790.t1 MTR_4g023430 51.807 83 36 2 248 327 141 222 9.54e-18 81.3
MS.gene43790.t1 MTR_3g083010 29.508 244 138 9 62 277 108 345 6.00e-17 81.3
MS.gene43790.t1 MTR_2g028160 30.833 240 138 11 62 277 106 341 1.06e-16 80.9
MS.gene43790.t1 MTR_2g025960 32.420 219 115 12 62 255 5 215 1.42e-16 79.3
MS.gene43790.t1 MTR_4g070550 30.000 250 139 11 58 277 97 340 4.08e-16 79.0
MS.gene43790.t1 MTR_1g068875 27.074 229 149 7 62 277 91 314 4.79e-16 78.6
MS.gene43790.t1 MTR_2g031640 29.310 232 144 8 62 277 92 319 5.73e-16 78.2
MS.gene43790.t1 MTR_1g097490 27.715 267 169 11 59 318 141 390 6.56e-16 78.2
MS.gene43790.t1 MTR_1g068835 27.236 246 150 9 32 256 55 292 9.14e-16 77.8
MS.gene43790.t1 MTR_2g024100 29.864 221 124 9 57 251 91 306 1.10e-15 77.8
MS.gene43790.t1 MTR_2g426070 28.452 239 142 7 62 277 105 337 3.74e-15 75.9
MS.gene43790.t1 MTR_0667s0010 27.755 245 140 11 62 277 94 330 4.70e-15 75.9
MS.gene43790.t1 MTR_2g021050 28.279 244 127 11 58 277 91 310 4.82e-15 75.5
MS.gene43790.t1 MTR_6g090180 25.091 275 168 8 74 319 169 434 5.98e-15 75.5
MS.gene43790.t1 MTR_4g028510 27.341 267 166 8 78 321 139 400 7.38e-15 75.5
MS.gene43790.t1 MTR_2g025420 27.915 283 161 12 33 277 69 346 3.22e-14 73.2
MS.gene43790.t1 MTR_7g078860 28.365 208 129 4 62 257 122 321 4.58e-14 72.8
MS.gene43790.t1 MTR_7g056760 23.724 333 206 10 20 318 86 404 1.08e-13 71.6
MS.gene43790.t1 MTR_2g426090 28.216 241 142 10 62 277 100 334 1.21e-13 71.6
MS.gene43790.t1 MTR_1g068860 26.291 213 140 7 57 256 86 294 2.36e-13 70.5
MS.gene43790.t1 MTR_2g426060 28.829 222 122 11 62 255 99 312 2.61e-13 70.5
MS.gene43790.t1 MTR_3g030250 27.556 225 129 10 40 255 111 310 2.98e-13 70.1
MS.gene43790.t1 MTR_4g013175 27.660 235 113 8 62 257 123 339 4.01e-13 70.1
MS.gene43790.t1 MTR_7g056260 27.698 278 133 10 13 257 75 317 8.99e-13 68.6
MS.gene43790.t1 MTR_2g021150 26.407 231 152 9 39 261 90 310 9.87e-13 68.6
MS.gene43790.t1 MTR_7g056390 28.959 221 113 9 62 257 132 333 9.87e-13 68.9
MS.gene43790.t1 MTR_2g021190 27.500 240 152 10 62 291 118 345 1.21e-12 68.6
MS.gene43790.t1 MTR_7g077910 29.224 219 119 7 62 257 44 249 1.33e-12 68.2
MS.gene43790.t1 MTR_3g007430 26.587 252 137 12 24 255 105 328 2.22e-12 67.8
MS.gene43790.t1 MTR_4g013185 26.349 315 164 14 62 319 123 426 2.33e-12 67.8
MS.gene43790.t1 MTR_2g031720 27.536 207 134 8 62 255 96 299 3.05e-12 67.4
MS.gene43790.t1 MTR_3g009310 27.723 202 129 6 60 256 138 327 3.28e-12 67.0
MS.gene43790.t1 MTR_0054s0100 22.630 327 213 10 28 321 87 406 4.29e-12 67.0
MS.gene43790.t1 MTR_2g426020 25.874 286 175 13 33 291 68 343 4.58e-12 66.6
MS.gene43790.t1 MTR_3g072470 28.571 224 110 8 62 257 132 333 6.06e-12 66.6
MS.gene43790.t1 MTR_8g467140 28.000 200 128 6 62 255 128 317 8.08e-12 65.5
MS.gene43790.t1 MTR_4g023100 56.140 57 22 2 271 327 66 119 8.44e-12 62.0
MS.gene43790.t1 MTR_2g078870 27.320 194 117 8 63 251 58 232 8.78e-12 65.5
MS.gene43790.t1 MTR_2g021155 26.909 275 163 10 39 289 97 357 1.02e-11 66.2
MS.gene43790.t1 MTR_7g070440 28.516 256 144 11 30 259 67 309 1.10e-11 65.5
MS.gene43790.t1 MTR_5g097680 26.148 283 164 10 73 321 154 425 1.77e-11 65.1
MS.gene43790.t1 MTR_4g109290 59.574 47 19 0 74 120 89 135 1.88e-11 62.8
MS.gene43790.t1 MTR_5g011200 26.291 213 134 9 62 265 117 315 2.16e-11 64.7
MS.gene43790.t1 MTR_6g048120 27.103 214 134 7 48 251 125 326 2.62e-11 64.3
MS.gene43790.t1 MTR_1g055145 45.977 87 43 3 153 239 117 199 2.70e-11 63.5
MS.gene43790.t1 MTR_2g043400 30.137 219 114 10 62 259 135 335 2.78e-11 64.3
MS.gene43790.t1 MTR_2g055970 27.586 203 125 8 62 255 307 496 3.07e-11 64.7
MS.gene43790.t1 MTR_8g041270 25.145 346 198 13 21 321 75 404 4.92e-11 63.5
MS.gene43790.t1 MTR_4g034860 25.475 263 140 9 26 257 102 339 6.56e-11 63.2
MS.gene43790.t1 MTR_2g047200 26.042 288 167 12 62 318 121 393 6.68e-11 63.2
MS.gene43790.t1 MTR_8g013005 56.863 51 22 0 271 321 4 54 6.75e-11 57.4
MS.gene43790.t1 MTR_2g046860 27.358 212 128 11 59 258 6 203 6.85e-11 62.8
MS.gene43790.t1 MTR_3g013770 25.564 266 159 12 23 273 97 338 7.46e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43790.t1 AT4G12560 31.707 246 135 10 33 256 70 304 7.60e-18 84.0
MS.gene43790.t1 AT4G12560 31.707 246 135 10 33 256 70 304 7.60e-18 84.0
MS.gene43790.t1 AT4G12560 31.707 246 135 10 33 256 70 304 7.60e-18 84.0

Find 63 sgRNAs with CRISPR-Local

Find 75 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATTATTTCTATGGTTT+TGG 0.146874 5.1:+54520639 MS.gene43790:CDS
ATAGAGTTACATTTGAAATA+TGG 0.209026 5.1:+54521033 MS.gene43790:CDS
CCAGATGCAAATTATTTCTA+TGG 0.244716 5.1:+54520633 MS.gene43790:CDS
GCAATCCTGCTCACTCCTTT+TGG 0.280755 5.1:+54521117 MS.gene43790:CDS
CTAGCAGGGCGTATGATTTA+TGG 0.282269 5.1:+54520970 MS.gene43790:CDS
TACATTTGAAATATGGGTTA+TGG 0.283926 5.1:+54521040 MS.gene43790:CDS
AAAAGACTGTTCTGCGAATA+AGG 0.287100 5.1:-54520804 None:intergenic
GTTATTCAAGCCTCCGTATA+TGG 0.289005 5.1:+54520556 MS.gene43790:CDS
GAATCTCTGCTTTCAATTCC+TGG 0.293988 5.1:+54521281 MS.gene43790:CDS
TTGGAATCAATTGTAGTAAA+AGG 0.296434 5.1:-54520609 None:intergenic
CTGTCCTTTGTCATTATACT+TGG 0.343254 5.1:-54521198 None:intergenic
ATTGATAGAGCTTTGAGATA+TGG 0.347203 5.1:-54520354 None:intergenic
GGACCATTGATTATATCATT+TGG 0.357863 5.1:-54520948 None:intergenic
CGTTTGTGAAATCCGGTAGA+TGG 0.360277 5.1:-54520582 None:intergenic
TAGAGTTACATTTGAAATAT+GGG 0.361693 5.1:+54521034 MS.gene43790:CDS
AAATGAAAGGCAACAATAAC+AGG 0.367546 5.1:-54520894 None:intergenic
ATAGAGGATGTCTCGCTCTA+TGG 0.367959 5.1:+54520997 MS.gene43790:CDS
CGGTAGATGGATTCCATATA+CGG 0.378320 5.1:-54520569 None:intergenic
CCATAGAAATAATTTGCATC+TGG 0.394587 5.1:-54520633 None:intergenic
GAAATAATTTGCATCTGGAT+TGG 0.426106 5.1:-54520628 None:intergenic
TTAGTAGAGTCGATCTCAAA+TGG 0.430961 5.1:+54520831 MS.gene43790:CDS
AGGTATTCGTTTGTGAAATC+CGG 0.432435 5.1:-54520589 None:intergenic
TAGCAGGGCGTATGATTTAT+GGG 0.440191 5.1:+54520971 MS.gene43790:CDS
TTGCCTTTCATTTAATTGAA+AGG 0.455366 5.1:+54520904 MS.gene43790:CDS
TAGTAGAGTCGATCTCAAAT+GGG 0.462940 5.1:+54520832 MS.gene43790:CDS
TCTCAAATGGGGCTATTCAC+TGG 0.466499 5.1:+54520844 MS.gene43790:CDS
TATGATTTATGGGTGTATAG+AGG 0.477400 5.1:+54520981 MS.gene43790:CDS
CGAGTCAACAGATGATTACT+TGG 0.478220 5.1:+54520668 MS.gene43790:CDS
TTTCCTTTCAATTAAATGAA+AGG 0.478785 5.1:-54520907 None:intergenic
ATATAATCAATGGTCCTAGC+AGG 0.484409 5.1:+54520955 MS.gene43790:CDS
AATACAATGTGCAATCGTCT+TGG 0.487961 5.1:+54521066 MS.gene43790:CDS
TTGCCAAATGATATAATCAA+TGG 0.496144 5.1:+54520945 MS.gene43790:CDS
AAATGGGGCTATTCACTGGT+TGG 0.496742 5.1:+54520848 MS.gene43790:CDS
AGATGGTATGCTATCTCACT+TGG 0.498942 5.1:+54520725 MS.gene43790:CDS
TTTGGCCAAAAGGAGTGAGC+AGG 0.511619 5.1:-54521122 None:intergenic
TAGAGGATGTCTCGCTCTAT+GGG 0.527354 5.1:+54520998 MS.gene43790:CDS
TGAGCTAGGAGTCTGTTCAT+AGG 0.528637 5.1:-54520703 None:intergenic
TAATGTGTGGAGCGCAATTG+AGG 0.536865 5.1:+54520767 MS.gene43790:CDS
TGTTCTGCGAATAAGGCAAA+AGG 0.540223 5.1:-54520797 None:intergenic
TCAATTCCTGGTGGTGACAG+TGG 0.541479 5.1:+54521293 MS.gene43790:CDS
AAGAAACATGCGTGGTGCAT+TGG 0.549642 5.1:+54521175 MS.gene43790:CDS
CAGGATTGCCATCAAAAGAC+AGG 0.556670 5.1:-54521103 None:intergenic
CATAAATCATACGCCCTGCT+AGG 0.560538 5.1:-54520969 None:intergenic
CGTATATGGAATCCATCTAC+CGG 0.563507 5.1:+54520570 MS.gene43790:CDS
TGATAGTGCTTCATATCCAA+TGG 0.566505 5.1:+54520401 MS.gene43790:CDS
TAGTTCTTCTTCATCTGACA+TGG 0.567167 5.1:+54520458 MS.gene43790:CDS
GAACAGACTCCTAGCTCAGA+TGG 0.582036 5.1:+54520708 MS.gene43790:CDS
TCTCATTGAGAGCTAATGTG+TGG 0.589751 5.1:+54520754 MS.gene43790:CDS
ACTTGACCACTGTCACCACC+AGG 0.596131 5.1:-54521299 None:intergenic
GATAGCATACCATCTGAGCT+AGG 0.602731 5.1:-54520717 None:intergenic
AATGTGTGGAGCGCAATTGA+GGG 0.603196 5.1:+54520768 MS.gene43790:CDS
TACATATGCATTGTCACAGT+AGG 0.609801 5.1:-54521237 None:intergenic
ATTCTGTATACATAACCACT+AGG 0.630116 5.1:-54521262 None:intergenic
GATGGTATGCTATCTCACTT+GGG 0.633795 5.1:+54520726 MS.gene43790:CDS
TATAATCAATGGTCCTAGCA+GGG 0.644894 5.1:+54520956 MS.gene43790:CDS
TTCTGTATACATAACCACTA+GGG 0.647948 5.1:-54521261 None:intergenic
CAATGCATATGTATCCCTAG+TGG 0.670534 5.1:+54521247 MS.gene43790:CDS
TTGGCCAAGTATAATGACAA+AGG 0.670777 5.1:+54521194 MS.gene43790:CDS
AGTAGAGTCGATCTCAAATG+GGG 0.672893 5.1:+54520833 MS.gene43790:CDS
TCTCTGCTTTCAATTCCTGG+TGG 0.696103 5.1:+54521284 MS.gene43790:CDS
TAGATGGATTCCATATACGG+AGG 0.723482 5.1:-54520566 None:intergenic
GTGTGGAGCGCAATTGAGGG+TGG 0.724694 5.1:+54520771 MS.gene43790:CDS
ATCGTTGGAAGAAACATGCG+TGG 0.741909 5.1:+54521167 MS.gene43790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAACTTGATTTTAA+AGG + chr5.1:54520504-54520523 MS.gene43790:CDS 10.0%
!! ATCAAGTTTAAAAAAAGATT+TGG - chr5.1:54520499-54520518 None:intergenic 15.0%
!! TCAAGTTTAAAAAAAGATTT+GGG - chr5.1:54520498-54520517 None:intergenic 15.0%
!! TTTCCTTTCAATTAAATGAA+AGG - chr5.1:54520910-54520929 None:intergenic 20.0%
!!! ATAGAGTTACATTTGAAATA+TGG + chr5.1:54521033-54521052 MS.gene43790:CDS 20.0%
!!! CAAATTATTTCTATGGTTTT+GGG + chr5.1:54520640-54520659 MS.gene43790:CDS 20.0%
!!! TAGAGTTACATTTGAAATAT+GGG + chr5.1:54521034-54521053 MS.gene43790:CDS 20.0%
! AGTTTAAAAAAAGATTTGGG+AGG - chr5.1:54520495-54520514 None:intergenic 25.0%
! ATCAAAAAACTAATGTCCAT+TGG - chr5.1:54520420-54520439 None:intergenic 25.0%
! CCAAAATACTATACAAAAAG+TGG + chr5.1:54521140-54521159 MS.gene43790:CDS 25.0%
! TTGCCAAATGATATAATCAA+TGG + chr5.1:54520945-54520964 MS.gene43790:CDS 25.0%
! TTGCCTTTCATTTAATTGAA+AGG + chr5.1:54520904-54520923 MS.gene43790:CDS 25.0%
! TTGGAATCAATTGTAGTAAA+AGG - chr5.1:54520612-54520631 None:intergenic 25.0%
!! TACATTTGAAATATGGGTTA+TGG + chr5.1:54521040-54521059 MS.gene43790:CDS 25.0%
!!! CCACTTTTTGTATAGTATTT+TGG - chr5.1:54521143-54521162 None:intergenic 25.0%
!!! GCAAATTATTTCTATGGTTT+TGG + chr5.1:54520639-54520658 MS.gene43790:CDS 25.0%
AAATGAAAGGCAACAATAAC+AGG - chr5.1:54520897-54520916 None:intergenic 30.0%
ATTCTGTATACATAACCACT+AGG - chr5.1:54521265-54521284 None:intergenic 30.0%
TATGATTTATGGGTGTATAG+AGG + chr5.1:54520981-54521000 MS.gene43790:CDS 30.0%
TTCTGTATACATAACCACTA+GGG - chr5.1:54521264-54521283 None:intergenic 30.0%
! CCATAGAAATAATTTGCATC+TGG - chr5.1:54520636-54520655 None:intergenic 30.0%
! GAAATAATTTGCATCTGGAT+TGG - chr5.1:54520631-54520650 None:intergenic 30.0%
! GGACCATTGATTATATCATT+TGG - chr5.1:54520951-54520970 None:intergenic 30.0%
!! ATTGATAGAGCTTTGAGATA+TGG - chr5.1:54520357-54520376 None:intergenic 30.0%
!! CCAGATGCAAATTATTTCTA+TGG + chr5.1:54520633-54520652 MS.gene43790:CDS 30.0%
!!! TGTATAGTATTTTGGCCAAA+AGG - chr5.1:54521135-54521154 None:intergenic 30.0%
AAAAGACTGTTCTGCGAATA+AGG - chr5.1:54520807-54520826 None:intergenic 35.0%
AATACAATGTGCAATCGTCT+TGG + chr5.1:54521066-54521085 MS.gene43790:CDS 35.0%
ACAAAAAGTGGTGATATCGT+TGG + chr5.1:54521152-54521171 MS.gene43790:CDS 35.0%
AGGTATTCGTTTGTGAAATC+CGG - chr5.1:54520592-54520611 None:intergenic 35.0%
ATATAATCAATGGTCCTAGC+AGG + chr5.1:54520955-54520974 MS.gene43790:CDS 35.0%
CTGTCCTTTGTCATTATACT+TGG - chr5.1:54521201-54521220 None:intergenic 35.0%
TACATATGCATTGTCACAGT+AGG - chr5.1:54521240-54521259 None:intergenic 35.0%
TAGTAGAGTCGATCTCAAAT+GGG + chr5.1:54520832-54520851 MS.gene43790:CDS 35.0%
TAGTTCTTCTTCATCTGACA+TGG + chr5.1:54520458-54520477 MS.gene43790:CDS 35.0%
TATAATCAATGGTCCTAGCA+GGG + chr5.1:54520956-54520975 MS.gene43790:CDS 35.0%
TTAGTAGAGTCGATCTCAAA+TGG + chr5.1:54520831-54520850 MS.gene43790:CDS 35.0%
TTGGCCAAGTATAATGACAA+AGG + chr5.1:54521194-54521213 MS.gene43790:CDS 35.0%
! TGATAGTGCTTCATATCCAA+TGG + chr5.1:54520401-54520420 MS.gene43790:CDS 35.0%
!! GATTTTAAAGGTTCATGCAG+AGG + chr5.1:54520516-54520535 MS.gene43790:CDS 35.0%
AGATGGTATGCTATCTCACT+TGG + chr5.1:54520725-54520744 MS.gene43790:CDS 40.0%
AGTAGAGTCGATCTCAAATG+GGG + chr5.1:54520833-54520852 MS.gene43790:CDS 40.0%
CAATGCATATGTATCCCTAG+TGG + chr5.1:54521247-54521266 MS.gene43790:CDS 40.0%
CGAGTCAACAGATGATTACT+TGG + chr5.1:54520668-54520687 MS.gene43790:CDS 40.0%
CGTATATGGAATCCATCTAC+CGG + chr5.1:54520570-54520589 MS.gene43790:CDS 40.0%
GAATCTCTGCTTTCAATTCC+TGG + chr5.1:54521281-54521300 MS.gene43790:CDS 40.0%
GATGGTATGCTATCTCACTT+GGG + chr5.1:54520726-54520745 MS.gene43790:CDS 40.0%
GTTATTCAAGCCTCCGTATA+TGG + chr5.1:54520556-54520575 MS.gene43790:CDS 40.0%
TAGCAGGGCGTATGATTTAT+GGG + chr5.1:54520971-54520990 MS.gene43790:CDS 40.0%
TCTCATTGAGAGCTAATGTG+TGG + chr5.1:54520754-54520773 MS.gene43790:CDS 40.0%
TGTTCTGCGAATAAGGCAAA+AGG - chr5.1:54520800-54520819 None:intergenic 40.0%
! ACTCTTGTCCTGTCTTTTGA+TGG + chr5.1:54521095-54521114 MS.gene43790:CDS 40.0%
! CGGTAGATGGATTCCATATA+CGG - chr5.1:54520572-54520591 None:intergenic 40.0%
! TAGATGGATTCCATATACGG+AGG - chr5.1:54520569-54520588 None:intergenic 40.0%
AAATGGGGCTATTCACTGGT+TGG + chr5.1:54520848-54520867 MS.gene43790:CDS 45.0%
AAGAAACATGCGTGGTGCAT+TGG + chr5.1:54521175-54521194 MS.gene43790:CDS 45.0%
AATGTGTGGAGCGCAATTGA+GGG + chr5.1:54520768-54520787 MS.gene43790:CDS 45.0%
ATAGAGGATGTCTCGCTCTA+TGG + chr5.1:54520997-54521016 MS.gene43790:CDS 45.0%
ATCGTTGGAAGAAACATGCG+TGG + chr5.1:54521167-54521186 MS.gene43790:CDS 45.0%
CAGGATTGCCATCAAAAGAC+AGG - chr5.1:54521106-54521125 None:intergenic 45.0%
CATAAATCATACGCCCTGCT+AGG - chr5.1:54520972-54520991 None:intergenic 45.0%
CGTTTGTGAAATCCGGTAGA+TGG - chr5.1:54520585-54520604 None:intergenic 45.0%
CTAGCAGGGCGTATGATTTA+TGG + chr5.1:54520970-54520989 MS.gene43790:CDS 45.0%
GATAGCATACCATCTGAGCT+AGG - chr5.1:54520720-54520739 None:intergenic 45.0%
TAATGTGTGGAGCGCAATTG+AGG + chr5.1:54520767-54520786 MS.gene43790:CDS 45.0%
TAGAGGATGTCTCGCTCTAT+GGG + chr5.1:54520998-54521017 MS.gene43790:CDS 45.0%
TCTCAAATGGGGCTATTCAC+TGG + chr5.1:54520844-54520863 MS.gene43790:CDS 45.0%
TCTCTGCTTTCAATTCCTGG+TGG + chr5.1:54521284-54521303 MS.gene43790:CDS 45.0%
TGAGCTAGGAGTCTGTTCAT+AGG - chr5.1:54520706-54520725 None:intergenic 45.0%
GAACAGACTCCTAGCTCAGA+TGG + chr5.1:54520708-54520727 MS.gene43790:CDS 50.0%
TTTGGCCAAAAGGAGTGAGC+AGG - chr5.1:54521125-54521144 None:intergenic 50.0%
! GCAATCCTGCTCACTCCTTT+TGG + chr5.1:54521117-54521136 MS.gene43790:CDS 50.0%
! TCAATTCCTGGTGGTGACAG+TGG + chr5.1:54521293-54521312 MS.gene43790:CDS 50.0%
ACTTGACCACTGTCACCACC+AGG - chr5.1:54521302-54521321 None:intergenic 55.0%
GTGTGGAGCGCAATTGAGGG+TGG + chr5.1:54520771-54520790 MS.gene43790:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 54520342 54521325 54520342 ID=MS.gene43790
chr5.1 mRNA 54520342 54521325 54520342 ID=MS.gene43790.t1;Parent=MS.gene43790
chr5.1 exon 54520342 54521325 54520342 ID=MS.gene43790.t1.exon1;Parent=MS.gene43790.t1
chr5.1 CDS 54520342 54521325 54520342 ID=cds.MS.gene43790.t1;Parent=MS.gene43790.t1
Gene Sequence

>MS.gene43790

ATGTTGATAACTCCATATCTCAAAGCTCTATCAATAGATCTTGAATCATCGCTTAACGATGATAGTGCTTCATATCCAATGGACATTAGTTTTTTGATTGACGATGATGATTACTATAGTTCTTCTTCATCTGACATGGATGAATTGTCGCCTCCCAAATCTTTTTTTAAACTTGATTTTAAAGGTTCATGCAGAGGCTTTATACTTTTGAATTGTTATTCAAGCCTCCGTATATGGAATCCATCTACCGGATTTCACAAACGAATACCTTTTACTACAATTGATTCCAATCCAGATGCAAATTATTTCTATGGTTTTGGGTATGACGAGTCAACAGATGATTACTTGGTGCTTTCAATGTCCTATGAACAGACTCCTAGCTCAGATGGTATGCTATCTCACTTGGGAATTTTCTCATTGAGAGCTAATGTGTGGAGCGCAATTGAGGGTGGTAACCTTTTGCCTTATTCGCAGAACAGTCTTTTAAACTTAGTAGAGTCGATCTCAAATGGGGCTATTCACTGGTTGGCTTTTCGTAATGATATATCAATGCCTGTTATTGTTGCCTTTCATTTAATTGAAAGGAAACTTCTAGAGTTGCGTTTGCCAAATGATATAATCAATGGTCCTAGCAGGGCGTATGATTTATGGGTGTATAGAGGATGTCTCGCTCTATGGGATATTTTGTCTGATAGAGTTACATTTGAAATATGGGTTATGGAAAAATACAATGTGCAATCGTCTTGGACTAAGACTCTTGTCCTGTCTTTTGATGGCAATCCTGCTCACTCCTTTTGGCCAAAATACTATACAAAAAGTGGTGATATCGTTGGAAGAAACATGCGTGGTGCATTGGCCAAGTATAATGACAAAGGACAGCTGCAAGAACATCACTCCTACTGTGACAATGCATATGTATCCCTAGTGGTTATGTATACAGAATCTCTGCTTTCAATTCCTGGTGGTGACAGTGGTCAAGTTTAA
Protein sequence

>MS.gene43790.t1

MLITPYLKALSIDLESSLNDDSASYPMDISFLIDDDDYYSSSSSDMDELSPPKSFFKLDFKGSCRGFILLNCYSSLRIWNPSTGFHKRIPFTTIDSNPDANYFYGFGYDESTDDYLVLSMSYEQTPSSDGMLSHLGIFSLRANVWSAIEGGNLLPYSQNSLLNLVESISNGAIHWLAFRNDISMPVIVAFHLIERKLLELRLPNDIINGPSRAYDLWVYRGCLALWDILSDRVTFEIWVMEKYNVQSSWTKTLVLSFDGNPAHSFWPKYYTKSGDIVGRNMRGALAKYNDKGQLQEHHSYCDNAYVSLVVMYTESLLSIPGGDSGQV