AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44887


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44887.t1 MTR_5g070088 82.124 386 69 0 1 386 1 386 0.0 621
MS.gene44887.t1 MTR_5g070080 69.171 386 114 4 2 386 5 386 3.83e-177 498
MS.gene44887.t1 MTR_5g070130 63.776 392 115 3 2 386 6 377 1.89e-170 481
MS.gene44887.t1 MTR_3g103020 55.352 383 146 6 1 380 13 373 1.41e-131 382
MS.gene44887.t1 MTR_5g097210 51.579 380 150 10 6 380 8 358 1.82e-114 338
MS.gene44887.t1 MTR_3g034160 51.263 396 156 11 2 385 4 374 8.38e-112 332
MS.gene44887.t1 MTR_4g023080 48.705 386 155 8 2 382 4 351 2.53e-108 322
MS.gene44887.t1 MTR_3g034180 48.615 397 167 11 2 386 118 489 6.62e-108 326
MS.gene44887.t1 MTR_1g055135 51.554 386 147 11 6 379 12 369 1.34e-106 318
MS.gene44887.t1 MTR_4g109270 48.101 395 158 10 1 382 1 361 1.87e-104 313
MS.gene44887.t1 MTR_3g034130 48.571 385 161 10 1 371 1 362 7.63e-104 311
MS.gene44887.t1 MTR_4g117750 51.804 388 139 10 6 380 2 354 1.07e-103 315
MS.gene44887.t1 MTR_4g117750 45.385 130 62 2 259 380 350 478 2.14e-22 99.0
MS.gene44887.t1 MTR_4g023090 46.040 404 171 10 2 386 11 386 9.75e-103 309
MS.gene44887.t1 MTR_4g117850 49.737 380 156 10 6 378 22 373 4.68e-101 304
MS.gene44887.t1 MTR_4g021785 46.667 390 162 11 1 382 1 352 1.05e-100 303
MS.gene44887.t1 MTR_4g094365 47.368 380 166 9 6 379 7 358 1.44e-99 300
MS.gene44887.t1 MTR_4g109280 49.202 376 158 9 6 378 7 352 2.78e-97 294
MS.gene44887.t1 MTR_4g117770 48.571 385 167 8 6 386 10 367 6.23e-97 293
MS.gene44887.t1 MTR_4g117810 48.571 385 167 8 6 386 10 367 6.23e-97 293
MS.gene44887.t1 MTR_4g117780 49.227 388 158 13 7 386 11 367 1.12e-96 293
MS.gene44887.t1 MTR_6g060650 48.964 386 160 10 6 379 7 367 4.25e-96 291
MS.gene44887.t1 MTR_4g116330 46.373 386 176 10 2 382 18 377 7.12e-95 288
MS.gene44887.t1 MTR_4g117720 45.641 390 142 10 6 386 50 378 5.85e-93 284
MS.gene44887.t1 MTR_4g023070 44.133 392 176 8 7 382 3 367 1.13e-92 283
MS.gene44887.t1 MTR_4g023120 44.133 392 176 9 7 382 3 367 2.37e-91 279
MS.gene44887.t1 MTR_8g433040 44.898 392 171 12 1 386 12 364 5.34e-91 278
MS.gene44887.t1 MTR_8g032380 44.898 392 171 12 1 386 12 364 5.34e-91 278
MS.gene44887.t1 MTR_4g122850 46.113 373 166 11 18 380 12 359 1.42e-90 278
MS.gene44887.t1 MTR_4g023380 44.660 412 158 11 2 386 11 379 5.86e-90 276
MS.gene44887.t1 MTR_8g032390 45.220 387 157 10 1 381 34 371 4.21e-89 273
MS.gene44887.t1 MTR_4g023150 45.478 387 171 11 2 382 5 357 1.80e-88 271
MS.gene44887.t1 MTR_4g023190 45.478 387 170 10 2 382 5 356 1.90e-88 271
MS.gene44887.t1 MTR_4g023440 45.619 388 138 12 3 386 14 332 2.34e-87 268
MS.gene44887.t1 MTR_4g118380 48.219 365 163 9 6 358 7 357 2.84e-87 268
MS.gene44887.t1 MTR_4g023200 44.293 368 165 10 21 382 24 357 6.23e-85 262
MS.gene44887.t1 MTR_4g116330 42.487 386 152 10 2 382 18 338 5.06e-79 246
MS.gene44887.t1 MTR_1g055165 41.775 383 141 12 6 382 9 315 8.75e-78 243
MS.gene44887.t1 MTR_8g013010 49.470 283 113 7 6 284 53 309 2.23e-77 241
MS.gene44887.t1 MTR_1g055195 48.592 284 120 8 111 386 213 478 1.19e-74 240
MS.gene44887.t1 MTR_4g121580 42.711 391 156 16 2 378 6 342 6.59e-73 233
MS.gene44887.t1 MTR_4g023130 48.134 268 117 6 119 382 61 310 3.18e-71 226
MS.gene44887.t1 MTR_4g023130 75.862 58 14 0 2 59 4 61 6.49e-21 92.8
MS.gene44887.t1 MTR_7g079370 40.055 362 176 11 36 381 16 352 9.66e-66 213
MS.gene44887.t1 MTR_2g048580 37.436 390 180 15 2 381 3 338 6.05e-63 205
MS.gene44887.t1 MTR_4g118370 48.193 249 97 7 137 380 34 255 1.06e-61 199
MS.gene44887.t1 MTR_4g117870 39.506 324 137 8 63 386 3 267 1.67e-61 199
MS.gene44887.t1 MTR_7g079400 44.755 286 135 9 108 381 59 333 1.35e-60 199
MS.gene44887.t1 MTR_4g118400 40.206 291 135 8 96 379 36 294 2.85e-56 186
MS.gene44887.t1 MTR_8g102520 36.340 388 167 15 2 381 3 318 2.35e-54 182
MS.gene44887.t1 MTR_4g116320 50.233 215 99 5 168 379 43 252 7.18e-54 179
MS.gene44887.t1 MTR_8g433030 49.321 221 102 7 164 381 125 338 1.23e-51 176
MS.gene44887.t1 MTR_8g433030 57.831 83 34 1 1 83 34 115 8.18e-20 89.7
MS.gene44887.t1 MTR_1g055250 50.000 202 90 6 163 360 49 243 2.74e-51 174
MS.gene44887.t1 MTR_4g116340 40.637 251 104 6 6 249 35 247 6.04e-47 160
MS.gene44887.t1 MTR_6g463430 43.902 205 108 2 179 382 1 199 4.16e-46 157
MS.gene44887.t1 MTR_1g055175 47.917 192 91 6 193 379 8 195 4.69e-46 157
MS.gene44887.t1 MTR_8g040935 43.689 206 109 4 179 380 1 203 3.30e-41 144
MS.gene44887.t1 MTR_4g117530 39.130 253 106 6 133 380 39 248 1.93e-40 144
MS.gene44887.t1 MTR_7g117720 42.593 216 81 6 2 212 5 182 3.79e-39 141
MS.gene44887.t1 MTR_7g117720 57.471 87 33 2 298 380 186 272 2.13e-21 93.2
MS.gene44887.t1 MTR_7g079420 38.462 273 117 11 123 381 905 1140 5.67e-38 145
MS.gene44887.t1 MTR_4g117430 49.324 148 53 4 124 265 3 134 6.59e-38 134
MS.gene44887.t1 MTR_4g114700 37.500 264 100 7 124 376 9 218 1.52e-32 122
MS.gene44887.t1 MTR_5g069120 40.102 197 87 6 17 202 1 177 3.71e-32 119
MS.gene44887.t1 MTR_1g097490 29.319 382 219 13 7 377 49 390 6.69e-31 122
MS.gene44887.t1 MTR_4g109290 42.077 183 54 5 1 179 1 135 8.95e-30 114
MS.gene44887.t1 MTR_2g021150 30.000 320 189 12 6 316 13 306 2.13e-28 114
MS.gene44887.t1 MTR_7g079450 45.652 138 67 4 245 381 3 133 1.14e-27 106
MS.gene44887.t1 MTR_5g011200 30.721 319 180 15 5 312 15 303 2.04e-27 112
MS.gene44887.t1 MTR_5g057790 29.245 318 186 10 7 316 46 332 2.23e-27 112
MS.gene44887.t1 MTR_8g467140 29.846 325 184 10 6 319 31 322 3.34e-27 110
MS.gene44887.t1 MTR_5g057710 29.245 318 186 11 7 316 46 332 3.38e-27 111
MS.gene44887.t1 MTR_4g107820 28.385 384 228 16 7 377 36 385 3.85e-27 111
MS.gene44887.t1 MTR_4g107780 28.385 384 228 16 7 377 36 385 3.85e-27 111
MS.gene44887.t1 MTR_4g107820 28.385 384 228 16 7 377 36 385 4.50e-27 111
MS.gene44887.t1 MTR_4g107780 28.385 384 228 16 7 377 36 385 5.59e-27 111
MS.gene44887.t1 MTR_3g014570 28.963 328 188 11 7 322 29 323 7.84e-27 110
MS.gene44887.t1 MTR_5g022420 27.348 362 206 14 6 351 26 346 1.37e-26 109
MS.gene44887.t1 MTR_3g007360 28.371 356 201 15 10 347 55 374 1.70e-26 109
MS.gene44887.t1 MTR_6g053240 29.968 317 181 13 7 310 28 316 7.12e-26 108
MS.gene44887.t1 MTR_3g030250 29.712 313 176 13 7 314 37 310 7.26e-26 107
MS.gene44887.t1 MTR_4g118360 47.581 124 58 5 259 379 1 120 7.47e-26 101
MS.gene44887.t1 MTR_3g007410 28.652 356 200 15 10 347 55 374 9.66e-26 107
MS.gene44887.t1 MTR_2g021190 27.937 383 233 17 7 377 21 372 1.01e-25 107
MS.gene44887.t1 MTR_6g053260 29.677 310 186 9 7 310 337 620 1.85e-25 108
MS.gene44887.t1 MTR_3g014540 29.787 329 184 13 7 322 29 323 1.93e-25 106
MS.gene44887.t1 MTR_5g023000 55.789 95 40 1 286 380 2 94 2.23e-25 99.4
MS.gene44887.t1 MTR_7g407070 31.832 333 187 16 7 320 32 343 2.96e-25 106
MS.gene44887.t1 MTR_1g054725 28.354 328 190 13 5 318 18 314 3.20e-25 105
MS.gene44887.t1 MTR_4g061340 29.697 330 174 15 7 316 26 317 6.86e-25 105
MS.gene44887.t1 MTR_2g055970 28.829 333 177 13 6 319 210 501 6.96e-25 106
MS.gene44887.t1 MTR_4g133170 29.023 348 191 13 7 336 4 313 8.28e-25 105
MS.gene44887.t1 MTR_2g028130 27.851 377 212 15 7 350 5 354 1.16e-24 104
MS.gene44887.t1 MTR_2g028160 29.379 354 209 14 7 336 5 341 1.26e-24 104
MS.gene44887.t1 MTR_2g028140 29.118 340 195 13 7 317 5 327 1.38e-24 104
MS.gene44887.t1 MTR_1g097330 27.222 360 208 11 2 346 11 331 1.55e-24 104
MS.gene44887.t1 MTR_1g094210 27.049 366 211 12 2 353 52 375 1.73e-24 104
MS.gene44887.t1 MTR_8g098830 40.244 164 89 5 194 353 35 193 1.79e-24 100
MS.gene44887.t1 MTR_7g056390 28.074 431 214 18 10 378 21 417 2.47e-24 103
MS.gene44887.t1 MTR_1g094210 26.923 390 228 13 2 377 52 398 3.65e-24 103
MS.gene44887.t1 MTR_7g070880 28.042 378 205 15 5 336 19 375 4.46e-24 103
MS.gene44887.t1 MTR_7g070830 29.014 355 201 12 5 323 19 358 6.56e-24 102
MS.gene44887.t1 MTR_3g009310 28.438 320 184 11 7 315 42 327 6.68e-24 102
MS.gene44887.t1 MTR_3g013770 27.139 339 201 12 7 332 33 338 8.10e-24 102
MS.gene44887.t1 MTR_8g101580 27.525 396 216 15 7 377 45 394 1.22e-23 101
MS.gene44887.t1 MTR_0242s0060 27.378 347 200 11 3 319 5 329 1.41e-23 101
MS.gene44887.t1 MTR_0242s0040 27.378 347 200 11 3 319 5 329 1.41e-23 101
MS.gene44887.t1 MTR_4g108820 29.338 317 157 11 6 319 41 293 1.60e-23 100
MS.gene44887.t1 MTR_3g083640 26.735 389 226 14 7 377 55 402 1.61e-23 101
MS.gene44887.t1 MTR_3g036290 30.094 319 167 14 7 315 22 294 1.71e-23 100
MS.gene44887.t1 MTR_3g006500 28.840 319 181 11 7 314 17 300 2.82e-23 100
MS.gene44887.t1 MTR_4g122860 35.676 185 88 4 199 379 157 314 3.09e-23 99.8
MS.gene44887.t1 MTR_4g122860 49.383 81 40 1 3 83 66 145 9.31e-13 68.9
MS.gene44887.t1 MTR_4g023430 61.798 89 31 2 6 92 40 127 3.76e-23 97.1
MS.gene44887.t1 MTR_4g023430 54.878 82 33 2 308 386 142 222 1.88e-19 86.7
MS.gene44887.t1 MTR_1g097560 29.330 358 201 18 7 353 36 352 4.38e-23 99.8
MS.gene44887.t1 MTR_7g056290 30.548 347 173 14 10 319 25 340 4.63e-23 100
MS.gene44887.t1 MTR_2g426090 27.174 368 202 13 1 336 1 334 6.71e-23 99.8
MS.gene44887.t1 MTR_4g055060 28.882 322 187 14 7 315 30 322 8.11e-23 99.4
MS.gene44887.t1 MTR_4g013180 28.446 341 189 12 6 319 10 322 8.98e-23 100
MS.gene44887.t1 MTR_2g043400 31.105 344 170 15 10 319 26 336 1.06e-22 99.4
MS.gene44887.t1 MTR_8g073550 34.597 211 106 9 6 208 29 215 1.30e-22 95.9
MS.gene44887.t1 MTR_1g114700 28.267 329 202 12 7 328 29 330 1.69e-22 98.2
MS.gene44887.t1 MTR_6g021880 26.829 328 207 10 18 334 31 336 1.78e-22 98.2
MS.gene44887.t1 MTR_3g007330 28.875 329 180 13 7 322 48 335 1.96e-22 98.2
MS.gene44887.t1 MTR_7g007300 26.852 324 187 11 4 318 100 382 1.99e-22 98.6
MS.gene44887.t1 MTR_1g088120 27.988 343 189 10 10 319 13 330 2.29e-22 98.2
MS.gene44887.t1 MTR_6g007135 27.273 319 195 10 10 316 29 322 2.44e-22 97.8
MS.gene44887.t1 MTR_3g010390 27.523 327 196 11 7 315 33 336 2.69e-22 97.8
MS.gene44887.t1 MTR_2g029990 27.487 382 234 18 8 377 52 402 2.90e-22 97.8
MS.gene44887.t1 MTR_3g083010 25.558 403 247 11 7 381 6 383 3.01e-22 97.8
MS.gene44887.t1 MTR_0667s0010 27.463 335 182 13 7 314 6 306 3.47e-22 97.8
MS.gene44887.t1 MTR_2g021155 29.063 320 181 11 7 314 36 321 3.64e-22 99.0
MS.gene44887.t1 MTR_2g021155 26.293 232 148 10 137 354 711 933 2.10e-12 69.3
MS.gene44887.t1 MTR_3g007430 29.012 324 170 15 10 314 46 328 6.27e-22 96.7
MS.gene44887.t1 MTR_2g046900 27.523 327 205 13 1 319 22 324 6.83e-22 96.7
MS.gene44887.t1 MTR_2g031640 26.984 378 212 13 7 361 6 342 7.23e-22 96.3
MS.gene44887.t1 MTR_7g070440 27.451 357 206 12 1 334 1 327 8.12e-22 96.3
MS.gene44887.t1 MTR_1g068875 26.239 343 208 9 7 336 4 314 8.33e-22 96.3
MS.gene44887.t1 MTR_3g030330 27.492 331 189 14 7 325 20 311 8.76e-22 95.9
MS.gene44887.t1 MTR_3g072470 30.199 351 168 14 10 319 22 336 8.84e-22 96.7
MS.gene44887.t1 MTR_2g043410 30.029 343 175 13 10 319 25 335 9.20e-22 96.7
MS.gene44887.t1 MTR_5g057690 28.205 312 187 10 7 316 46 322 1.23e-21 95.9
MS.gene44887.t1 MTR_1g068835 29.060 351 193 14 5 336 2 315 1.56e-21 95.5
MS.gene44887.t1 MTR_2g046920 28.571 336 182 15 1 319 18 312 1.76e-21 95.1
MS.gene44887.t1 MTR_7g078860 26.590 346 201 9 2 319 4 324 2.12e-21 95.1
MS.gene44887.t1 MTR_7g056503 26.420 405 238 18 6 377 20 397 2.90e-21 94.7
MS.gene44887.t1 MTR_3g013740 27.457 346 192 16 1 321 38 349 2.96e-21 95.1
MS.gene44887.t1 MTR_7g055987 29.240 342 161 16 10 319 23 315 3.06e-21 94.4
MS.gene44887.t1 MTR_7g062060 26.667 345 212 11 2 319 7 337 3.31e-21 94.7
MS.gene44887.t1 MTR_3g023930 29.508 305 170 12 7 310 34 294 4.12e-21 94.0
MS.gene44887.t1 MTR_5g057020 28.190 337 184 14 7 337 46 330 6.03e-21 93.2
MS.gene44887.t1 MTR_3g006670 26.190 336 192 15 7 324 49 346 6.72e-21 94.0
MS.gene44887.t1 MTR_6g048120 29.114 316 187 10 7 310 36 326 6.81e-21 94.0
MS.gene44887.t1 MTR_3g436150 29.204 339 182 16 7 320 32 337 6.99e-21 93.6
MS.gene44887.t1 MTR_2g047200 26.225 408 230 16 7 377 20 393 7.20e-21 93.6
MS.gene44887.t1 MTR_2g047832 28.161 348 188 15 1 319 23 337 7.50e-21 94.0
MS.gene44887.t1 MTR_2g426070 28.045 353 208 11 8 336 7 337 7.50e-21 93.6
MS.gene44887.t1 MTR_1g055070 28.990 307 173 13 2 286 44 327 8.56e-21 93.6
MS.gene44887.t1 MTR_6g065980 27.244 312 174 13 7 310 16 282 9.44e-21 92.8
MS.gene44887.t1 MTR_2g031720 26.486 370 213 14 7 352 6 340 1.23e-20 93.2
MS.gene44887.t1 MTR_7g056760 25.187 401 255 11 5 377 21 404 1.23e-20 93.2
MS.gene44887.t1 MTR_3g010590 27.848 316 168 12 7 310 39 306 1.57e-20 92.4
MS.gene44887.t1 MTR_3g024040 28.939 311 179 13 14 320 38 310 2.19e-20 92.0
MS.gene44887.t1 MTR_0464s0020 31.858 339 186 14 10 319 26 348 2.61e-20 92.4
MS.gene44887.t1 MTR_7g066850 26.844 339 196 13 7 323 23 331 2.63e-20 92.8
MS.gene44887.t1 MTR_7g060940 30.347 346 169 12 7 319 22 328 2.78e-20 92.0
MS.gene44887.t1 MTR_4g031770 28.571 329 183 15 5 318 2 293 2.78e-20 91.7
MS.gene44887.t1 MTR_6g004660 28.571 329 188 14 7 316 16 316 3.18e-20 91.7
MS.gene44887.t1 MTR_4g013185 28.818 347 193 14 10 319 13 342 3.21e-20 92.0
MS.gene44887.t1 MTR_2g024110 28.107 338 199 13 7 330 4 311 3.25e-20 91.7
MS.gene44887.t1 MTR_1g115160 25.806 310 192 9 6 312 21 295 4.12e-20 91.3
MS.gene44887.t1 MTR_6g048140 30.284 317 176 14 7 310 39 323 4.66e-20 91.3
MS.gene44887.t1 MTR_7g013590 28.972 321 183 13 9 316 38 326 4.94e-20 91.3
MS.gene44887.t1 MTR_4g070550 27.114 343 202 13 7 322 5 326 5.54e-20 91.3
MS.gene44887.t1 MTR_2g078900 25.949 316 183 11 7 310 33 309 5.67e-20 90.5
MS.gene44887.t1 MTR_0044s0300 28.710 310 183 11 7 310 38 315 6.88e-20 90.9
MS.gene44887.t1 MTR_2g021252 24.533 375 218 13 10 373 50 370 7.39e-20 90.5
MS.gene44887.t1 MTR_0707s0020 25.000 436 250 16 6 379 25 445 8.82e-20 90.9
MS.gene44887.t1 MTR_7g056260 27.976 336 178 11 10 316 17 317 9.82e-20 89.4
MS.gene44887.t1 MTR_2g021210 28.213 319 184 14 7 318 84 364 1.22e-19 90.5
MS.gene44887.t1 MTR_6g034720 41.406 128 62 4 147 267 53 174 1.84e-19 86.7
MS.gene44887.t1 MTR_3g011060 28.213 319 200 14 7 316 28 326 1.96e-19 89.4
MS.gene44887.t1 MTR_3g058440 31.076 251 127 10 7 240 35 256 2.18e-19 88.2
MS.gene44887.t1 MTR_7g078040 27.874 348 210 11 3 319 5 342 2.50e-19 89.4
MS.gene44887.t1 MTR_1g050542 24.416 385 239 11 7 377 58 404 2.77e-19 89.4
MS.gene44887.t1 MTR_2g026010 28.242 347 203 13 7 336 4 321 3.04e-19 89.0
MS.gene44887.t1 MTR_6g086920 25.111 450 246 18 6 379 37 471 3.38e-19 89.4
MS.gene44887.t1 MTR_1g068860 26.586 331 197 10 7 322 4 303 4.00e-19 88.6
MS.gene44887.t1 MTR_5g057643 28.455 246 145 6 7 246 46 266 4.06e-19 86.7
MS.gene44887.t1 MTR_5g043160 28.024 339 208 13 10 319 53 384 4.60e-19 89.0
MS.gene44887.t1 MTR_2g426020 25.185 405 237 18 7 386 6 369 5.19e-19 88.2
MS.gene44887.t1 MTR_3g024110 26.791 321 182 10 7 316 101 379 6.90e-19 88.2
MS.gene44887.t1 MTR_3g009240 28.616 318 184 12 7 316 36 318 7.60e-19 87.8
MS.gene44887.t1 MTR_7g060960 29.799 349 165 16 7 334 32 321 8.99e-19 87.4
MS.gene44887.t1 MTR_4g129190 27.920 351 176 14 7 319 6 317 9.26e-19 87.4
MS.gene44887.t1 MTR_7g061010 29.134 381 205 16 7 357 22 367 1.49e-18 87.0
MS.gene44887.t1 MTR_3g036430 25.000 384 214 14 7 377 20 342 1.56e-18 86.3
MS.gene44887.t1 MTR_2g024100 27.326 344 189 12 11 328 11 319 2.01e-18 86.7
MS.gene44887.t1 MTR_1g055200 51.807 83 38 1 120 202 5 85 2.03e-18 80.5
MS.gene44887.t1 MTR_5g009060 28.443 334 189 15 7 310 25 338 2.25e-18 86.3
MS.gene44887.t1 MTR_5g046260 26.198 313 171 13 7 318 4 257 2.59e-18 85.1
MS.gene44887.t1 MTR_1g442850 29.080 337 178 15 10 319 8 310 2.93e-18 85.9
MS.gene44887.t1 MTR_8g062660 24.582 419 218 18 2 377 17 380 3.08e-18 87.0
MS.gene44887.t1 MTR_5g027330 25.610 328 213 12 11 324 44 354 3.40e-18 86.3
MS.gene44887.t1 MTR_5g027370 25.610 328 213 12 11 324 33 343 3.42e-18 86.3
MS.gene44887.t1 MTR_2g426060 27.019 359 205 14 7 336 6 336 3.52e-18 85.9
MS.gene44887.t1 MTR_7g078900 27.119 354 205 11 1 319 3 338 3.53e-18 85.9
MS.gene44887.t1 MTR_3g011020 28.487 337 169 17 7 322 28 313 3.60e-18 85.5
MS.gene44887.t1 MTR_4g013175 27.933 358 182 13 10 319 13 342 3.76e-18 85.9
MS.gene44887.t1 MTR_3g010520 29.316 307 169 14 7 310 25 286 4.00e-18 85.1
MS.gene44887.t1 MTR_0267s0050 27.248 367 210 16 1 336 1 341 5.44e-18 85.1
MS.gene44887.t1 MTR_7g067680 27.493 371 198 17 7 369 49 356 5.99e-18 85.1
MS.gene44887.t1 MTR_2g028110 27.273 330 182 11 7 314 4 297 6.24e-18 85.1
MS.gene44887.t1 MTR_7g056003 28.571 343 179 11 10 319 18 327 7.99e-18 84.7
MS.gene44887.t1 MTR_2g021050 25.627 359 185 11 7 336 5 310 8.72e-18 84.3
MS.gene44887.t1 MTR_4g033495 25.948 343 192 13 7 319 27 337 8.90e-18 85.1
MS.gene44887.t1 MTR_4g037465 26.131 398 215 15 7 363 21 380 1.19e-17 84.3
MS.gene44887.t1 MTR_5g096710 27.119 354 198 13 7 336 23 340 1.23e-17 84.3
MS.gene44887.t1 MTR_0054s0090 23.741 417 256 14 2 380 12 404 1.26e-17 84.3
MS.gene44887.t1 MTR_2g025420 26.902 368 204 12 7 336 6 346 1.32e-17 84.3
MS.gene44887.t1 MTR_3g011100 26.911 327 188 15 7 316 235 527 1.34e-17 85.1
MS.gene44887.t1 MTR_5g056020 28.074 431 223 20 7 377 17 420 1.47e-17 84.7
MS.gene44887.t1 MTR_4g028510 26.250 400 248 15 10 380 19 400 1.67e-17 84.3
MS.gene44887.t1 MTR_3g058480 30.627 271 148 13 7 263 39 283 2.21e-17 82.8
MS.gene44887.t1 MTR_7g077070 28.116 345 196 14 7 316 16 343 2.59e-17 83.6
MS.gene44887.t1 MTR_6g090180 24.939 409 259 13 2 378 42 434 2.60e-17 83.6
MS.gene44887.t1 MTR_5g010660 27.795 331 191 10 7 323 34 330 2.83e-17 83.6
MS.gene44887.t1 MTR_5g068040 27.761 335 172 14 10 319 19 308 3.37e-17 82.8
MS.gene44887.t1 MTR_8g066440 25.355 422 231 13 3 378 19 402 3.55e-17 82.8
MS.gene44887.t1 MTR_2g047892 26.901 342 194 14 7 323 22 332 3.71e-17 82.8
MS.gene44887.t1 MTR_3g010920 28.065 310 170 15 7 310 44 306 3.73e-17 82.8
MS.gene44887.t1 MTR_5g008530 68.852 61 17 1 3 63 14 72 4.44e-17 75.5
MS.gene44887.t1 MTR_7g016930 27.697 343 180 14 2 319 11 310 4.68e-17 82.0
MS.gene44887.t1 MTR_3g007270 25.000 320 207 10 7 315 47 344 4.93e-17 82.4
MS.gene44887.t1 MTR_1g115185 28.254 315 190 13 6 312 38 324 4.98e-17 82.4
MS.gene44887.t1 MTR_5g069930 26.744 344 184 13 6 319 5 310 5.52e-17 82.0
MS.gene44887.t1 MTR_5g059430 22.857 420 267 13 2 380 21 424 6.34e-17 82.4
MS.gene44887.t1 MTR_7g077970 28.402 338 200 14 10 320 10 332 6.51e-17 82.4
MS.gene44887.t1 MTR_7g050520 27.410 332 174 13 6 310 21 312 7.26e-17 82.0
MS.gene44887.t1 MTR_4g030830 25.907 386 221 15 4 350 6 365 7.72e-17 81.6
MS.gene44887.t1 MTR_1g055375 27.327 333 189 19 5 318 2 300 8.59e-17 81.3
MS.gene44887.t1 MTR_2g046800 30.395 329 193 17 7 314 14 327 8.63e-17 81.6
MS.gene44887.t1 MTR_6g016285 25.459 436 229 14 3 377 17 417 8.75e-17 82.0
MS.gene44887.t1 MTR_5g097680 25.576 434 248 15 2 380 12 425 9.73e-17 81.6
MS.gene44887.t1 MTR_0064s0160 24.570 407 251 16 6 381 41 422 1.40e-16 81.3
MS.gene44887.t1 MTR_6g027910 25.610 328 190 13 7 310 9 306 1.45e-16 80.9
MS.gene44887.t1 MTR_0115s0020 23.684 418 247 18 7 381 10 398 1.57e-16 80.9
MS.gene44887.t1 MTR_4g028660 24.570 407 249 15 5 378 14 395 1.61e-16 80.9
MS.gene44887.t1 MTR_4g027450 24.570 407 249 15 5 378 14 395 1.61e-16 80.9
MS.gene44887.t1 MTR_7g050480 27.711 332 173 13 6 310 21 312 1.63e-16 80.9
MS.gene44887.t1 MTR_1g055145 63.636 66 24 0 17 82 43 108 1.67e-16 79.3
MS.gene44887.t1 MTR_5g037680 25.959 339 201 10 2 314 3 317 1.93e-16 80.9
MS.gene44887.t1 MTR_1g054575 26.667 330 188 13 7 323 52 340 2.06e-16 81.3
MS.gene44887.t1 MTR_2g461450 27.414 321 175 10 10 316 21 297 2.33e-16 80.1
MS.gene44887.t1 MTR_7g062100 26.866 402 234 16 7 377 24 396 2.46e-16 80.5
MS.gene44887.t1 MTR_0097s0030 25.414 362 214 11 10 350 17 343 2.49e-16 80.1
MS.gene44887.t1 MTR_2g047240 25.414 362 214 11 10 350 17 343 2.49e-16 80.1
MS.gene44887.t1 MTR_4g008790 26.747 415 211 19 10 362 42 425 2.73e-16 80.5
MS.gene44887.t1 MTR_7g017040 24.450 409 252 14 2 378 11 394 2.87e-16 80.1
MS.gene44887.t1 MTR_7g028660 24.719 356 212 9 5 334 9 334 3.05e-16 80.1
MS.gene44887.t1 MTR_5g057040 30.288 208 116 6 7 208 46 230 3.16e-16 81.3
MS.gene44887.t1 MTR_2g031680 25.071 351 196 13 7 333 6 313 3.61e-16 79.7
MS.gene44887.t1 MTR_3g023940 27.245 323 176 14 7 310 34 316 3.63e-16 79.7
MS.gene44887.t1 MTR_4g019990 25.816 337 209 9 5 319 4 321 3.83e-16 79.7
MS.gene44887.t1 MTR_2g104340 27.143 350 192 13 2 314 9 332 6.17e-16 79.3
MS.gene44887.t1 MTR_0128s0070 27.566 341 184 14 7 319 22 327 6.61e-16 79.0
MS.gene44887.t1 MTR_3g010970 26.774 310 174 13 10 310 51 316 6.95e-16 79.0
MS.gene44887.t1 MTR_4g014370 25.408 429 243 16 2 380 6 407 7.36e-16 79.0
MS.gene44887.t1 MTR_7g077990 26.706 337 199 12 3 319 13 321 7.70e-16 79.0
MS.gene44887.t1 MTR_5g069760 26.393 341 186 13 5 319 4 305 8.75e-16 78.6
MS.gene44887.t1 MTR_5g010550 27.401 354 196 13 7 317 44 379 8.89e-16 79.0
MS.gene44887.t1 MTR_5g010550 27.401 354 196 13 7 317 58 393 9.74e-16 79.0
MS.gene44887.t1 MTR_8g046310 26.115 314 203 11 10 314 19 312 1.22e-15 78.2
MS.gene44887.t1 MTR_0054s0100 23.206 418 259 13 2 380 12 406 1.26e-15 78.2
MS.gene44887.t1 MTR_4g028750 27.381 336 198 16 3 310 12 329 1.35e-15 78.2
MS.gene44887.t1 MTR_0649s0020 24.939 409 237 14 7 377 11 387 1.37e-15 78.2
MS.gene44887.t1 MTR_6g086825 26.253 419 238 18 5 380 68 458 1.73e-15 78.2
MS.gene44887.t1 MTR_5g010610 27.326 344 192 13 7 309 34 360 2.55e-15 77.8
MS.gene44887.t1 MTR_5g010560 27.826 345 190 13 7 309 44 371 3.29e-15 77.4
MS.gene44887.t1 MTR_3g024150 27.778 324 162 17 10 310 38 312 3.60e-15 76.6
MS.gene44887.t1 MTR_0627s0010 27.246 345 186 16 7 311 38 357 3.65e-15 77.0
MS.gene44887.t1 MTR_7g022600 27.324 355 184 16 10 319 26 351 4.25e-15 76.6
MS.gene44887.t1 MTR_7g056737 26.844 339 185 12 6 319 21 321 4.41e-15 76.6
MS.gene44887.t1 MTR_8g099460 26.444 329 189 11 7 314 5 301 6.16e-15 76.3
MS.gene44887.t1 MTR_3g096250 27.586 319 150 15 7 316 47 293 6.53e-15 75.5
MS.gene44887.t1 MTR_4g130330 25.666 413 227 17 1 373 1 373 8.20e-15 75.9
MS.gene44887.t1 MTR_6g017280 28.614 339 186 16 7 319 9 317 9.35e-15 75.5
MS.gene44887.t1 MTR_3g010870 26.415 318 177 14 7 310 37 311 9.50e-15 75.5
MS.gene44887.t1 MTR_3g009260 27.950 322 178 14 7 316 41 320 9.69e-15 75.5
MS.gene44887.t1 MTR_7g079160 27.397 365 198 14 5 319 6 353 1.21e-14 75.5
MS.gene44887.t1 MTR_3g030350 28.037 321 187 13 7 318 35 320 1.26e-14 75.1
MS.gene44887.t1 MTR_1g007410 25.714 350 207 15 2 320 17 344 1.44e-14 75.1
MS.gene44887.t1 MTR_3g464500 26.344 372 201 16 1 334 21 357 1.76e-14 74.7
MS.gene44887.t1 MTR_2g025960 30.734 218 120 10 121 314 5 215 1.80e-14 73.9
MS.gene44887.t1 MTR_6g080680 25.743 404 237 16 5 376 17 389 1.81e-14 74.7
MS.gene44887.t1 MTR_7g056797 30.769 221 113 8 5 208 21 218 2.19e-14 74.3
MS.gene44887.t1 MTR_8g041270 23.981 417 257 13 2 380 10 404 2.28e-14 74.3
MS.gene44887.t1 MTR_7g056717 26.786 336 177 13 12 319 27 321 2.30e-14 74.3
MS.gene44887.t1 MTR_2g078850 25.633 316 181 12 10 310 33 309 2.47e-14 73.9
MS.gene44887.t1 MTR_3g011650 30.962 239 121 11 9 238 81 284 2.57e-14 73.2
MS.gene44887.t1 MTR_1g029650 25.532 423 234 20 10 379 11 405 2.74e-14 74.3
MS.gene44887.t1 MTR_6g046320 27.171 357 186 17 7 311 39 373 2.76e-14 74.3
MS.gene44887.t1 MTR_7g055870 25.210 357 199 13 10 320 16 350 3.03e-14 74.3
MS.gene44887.t1 MTR_7g078840 27.222 360 198 12 5 319 8 348 3.22e-14 74.3
MS.gene44887.t1 MTR_7g035295 25.926 324 188 12 7 316 16 301 6.20e-14 73.2
MS.gene44887.t1 MTR_5g096900 29.577 284 165 12 1 266 6 272 6.42e-14 72.4
MS.gene44887.t1 MTR_5g022045 26.866 335 191 12 7 311 35 345 8.83e-14 72.8
MS.gene44887.t1 MTR_4g080200 26.562 320 171 11 10 310 6 280 1.16e-13 72.0
MS.gene44887.t1 MTR_4g129160 26.420 352 208 19 1 319 1 334 1.97e-13 71.2
MS.gene44887.t1 MTR_7g055930 24.930 357 200 13 10 320 16 350 2.19e-13 71.6
MS.gene44887.t1 MTR_2g437110 26.667 345 184 17 7 319 22 329 2.22e-13 71.6
MS.gene44887.t1 MTR_7g052150 26.393 341 181 14 7 317 22 322 2.75e-13 71.2
MS.gene44887.t1 MTR_5g048160 23.753 421 242 19 7 381 4 391 3.70e-13 70.9
MS.gene44887.t1 MTR_7g017170 26.409 337 197 16 7 314 18 332 4.01e-13 70.9
MS.gene44887.t1 MTR_7g017130 26.409 337 197 16 7 314 18 332 4.27e-13 70.5
MS.gene44887.t1 MTR_4g011660 24.823 423 242 18 7 377 19 417 5.74e-13 70.1
MS.gene44887.t1 MTR_3g010620 25.243 309 183 11 7 310 36 301 6.24e-13 70.1
MS.gene44887.t1 MTR_1g112930 24.051 316 186 13 7 309 25 299 9.47e-13 69.3
MS.gene44887.t1 MTR_5g022090 26.019 319 173 11 7 311 34 303 9.92e-13 69.3
MS.gene44887.t1 MTR_8g064890 25.680 331 196 14 5 310 14 319 1.17e-12 69.3
MS.gene44887.t1 MTR_4g134560 25.806 372 218 16 7 335 31 387 1.48e-12 69.3
MS.gene44887.t1 MTR_7g052670 25.882 425 242 19 6 377 20 424 1.96e-12 68.6
MS.gene44887.t1 MTR_7g079640 25.287 348 211 17 6 335 12 328 2.09e-12 68.2
MS.gene44887.t1 MTR_5g023570 36.508 126 55 4 6 130 36 137 2.24e-12 64.7
MS.gene44887.t1 MTR_2g021950 25.356 351 173 17 10 310 19 330 2.39e-12 68.2
MS.gene44887.t1 MTR_8g013005 60.784 51 20 0 330 380 4 54 2.59e-12 62.0
MS.gene44887.t1 MTR_7g056570 25.926 351 173 14 6 319 17 317 3.18e-12 68.2
MS.gene44887.t1 MTR_1g071010 26.453 344 187 15 7 319 15 323 3.31e-12 67.8
MS.gene44887.t1 MTR_6g004210 25.672 335 183 15 18 316 36 340 3.34e-12 67.8
MS.gene44887.t1 MTR_7g050490 30.876 217 100 8 6 207 7 188 4.28e-12 65.1
MS.gene44887.t1 MTR_4g030110 25.287 348 179 14 3 319 26 323 4.61e-12 67.4
MS.gene44887.t1 MTR_4g023100 56.140 57 22 2 330 386 66 119 6.43e-12 62.8
MS.gene44887.t1 MTR_4g055820 25.073 343 214 10 2 314 9 338 7.20e-12 66.6
MS.gene44887.t1 MTR_6g017270 24.224 322 164 12 10 319 12 265 7.60e-12 66.2
MS.gene44887.t1 MTR_4g028680 25.223 337 216 13 3 315 12 336 1.40e-11 65.9
MS.gene44887.t1 MTR_3g009250 29.876 241 124 11 7 238 41 245 1.55e-11 64.3
MS.gene44887.t1 MTR_4g102410 25.606 289 171 10 5 265 59 331 1.94e-11 65.5
MS.gene44887.t1 MTR_1g023400 24.540 326 183 15 7 310 3 287 2.34e-11 65.1
MS.gene44887.t1 MTR_7g037670 26.316 266 149 10 7 262 23 251 3.04e-11 64.3
MS.gene44887.t1 MTR_5g007940 25.758 264 155 7 14 240 34 293 6.44e-11 63.9
MS.gene44887.t1 MTR_7g066010 22.865 363 162 11 6 322 20 310 6.94e-11 63.5
MS.gene44887.t1 MTR_8g467670 25.000 328 195 14 5 310 12 310 7.78e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44887.t1 AT4G12560 29.755 326 185 10 7 314 4 303 1.56e-27 112
MS.gene44887.t1 AT4G12560 29.755 326 185 10 7 314 4 303 1.56e-27 112
MS.gene44887.t1 AT4G12560 29.755 326 185 10 7 314 4 303 1.56e-27 112
MS.gene44887.t1 AT3G06240 26.914 405 241 16 7 377 36 419 4.76e-21 94.7
MS.gene44887.t1 AT3G23880 29.014 355 202 15 7 348 14 331 6.75e-21 93.6
MS.gene44887.t1 AT2G40925 26.875 320 196 11 7 314 27 320 6.25e-16 79.3
MS.gene44887.t1 AT1G30790 27.414 321 200 14 2 310 4 303 2.12e-14 74.7
MS.gene44887.t1 AT4G21240 26.332 319 192 13 7 316 36 320 9.30e-14 72.8
MS.gene44887.t1 AT1G12870 23.469 392 231 16 1 361 27 380 2.93e-13 71.2
MS.gene44887.t1 AT3G10240 26.048 334 213 12 7 336 27 330 3.16e-13 70.9
MS.gene44887.t1 AT4G19940 27.273 308 185 9 7 300 35 317 5.79e-13 70.1
MS.gene44887.t1 AT4G19930 28.173 323 195 12 6 314 42 341 7.34e-13 70.1
MS.gene44887.t1 AT2G16810 29.057 265 156 11 6 264 40 278 1.40e-12 68.2
MS.gene44887.t1 AT3G47150 31.915 188 103 5 3 183 8 177 1.55e-12 68.6
MS.gene44887.t1 AT3G21120 28.495 186 108 6 6 185 2 168 2.55e-11 65.1

Find 75 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATTATTTCTATGGTTT+TGG 0.146874 5.2:+59338841 MS.gene44887:CDS
AACAAACATGCATAGTTTAT+TGG 0.206624 5.2:+59339377 MS.gene44887:CDS
ACTTGACTGGTAACCTTAAT+AGG 0.238398 5.2:-59338411 None:intergenic
CCAGATGCAAATTATTTCTA+TGG 0.242234 5.2:+59338835 MS.gene44887:CDS
TAATCATTCAAATCCTATTA+AGG 0.261388 5.2:+59338398 MS.gene44887:CDS
GTTATTCAAGCCTCCGTATA+TGG 0.286074 5.2:+59338758 MS.gene44887:CDS
GCCTTCCTACTCGCTGCTTT+TGG 0.288891 5.2:+59339319 MS.gene44887:CDS
AAAATACTGTCCTGCGAATA+AGG 0.289089 5.2:-59339006 None:intergenic
GAATCTCTGCTTTCAATTCC+TGG 0.293988 5.2:+59339483 MS.gene44887:CDS
GTGGAATCAAGTGTAGTAAA+AGG 0.326791 5.2:-59338811 None:intergenic
ATAAAGGTGCAGTTGAAATA+TGG 0.331433 5.2:+59339235 MS.gene44887:CDS
ATAAAGGATGTCTTGCTCTA+TGG 0.333566 5.2:+59339199 MS.gene44887:CDS
CTGTCCTTTGTCATTATACT+TGG 0.343254 5.2:-59339400 None:intergenic
CTAGTAGTGTGTATGAATTA+TGG 0.346010 5.2:+59339172 MS.gene44887:CDS
TCCTACTGTGACAATGAATA+TGG 0.352513 5.2:+59339438 MS.gene44887:CDS
CGGTGGATGGATTCCATATA+CGG 0.362666 5.2:-59338771 None:intergenic
ATTTGAATGATTAACTCAAT+AGG 0.382221 5.2:-59338388 None:intergenic
ATAGATAGAGATTCAAGATA+TGG 0.384509 5.2:-59338556 None:intergenic
AGTTATCAACTGAATTCTAT+TGG 0.384764 5.2:-59338533 None:intergenic
AAATGTGAATTTGCGAAATC+AGG 0.390581 5.2:-59338487 None:intergenic
AGGTATTTGTTTGTGAAATC+CGG 0.393264 5.2:-59338791 None:intergenic
TGGGATCTTTCGTCTGATAA+AGG 0.394653 5.2:+59339219 MS.gene44887:CDS
ATATCAATTCGTGTTATTGT+TGG 0.407133 5.2:+59339087 MS.gene44887:CDS
TAGTAGTGTGTATGAATTAT+GGG 0.419654 5.2:+59339173 MS.gene44887:CDS
TCTCAAATGGTGCTCTTCAC+TGG 0.420308 5.2:+59339046 MS.gene44887:CDS
GGACCATACACTATATCATT+TGG 0.433518 5.2:-59339150 None:intergenic
CATAATTCATACACACTACT+AGG 0.438164 5.2:-59339171 None:intergenic
ATAGTTCTTCTTCGTCGGAC+AGG 0.438426 5.2:+59338659 MS.gene44887:CDS
TAGATCTTGAATCATCGCTT+AGG 0.439460 5.2:+59338578 MS.gene44887:CDS
AAATGGTGCTCTTCACTGGT+TGG 0.443938 5.2:+59339050 MS.gene44887:CDS
TATGAATTATGGGTGTATAA+AGG 0.444879 5.2:+59339183 MS.gene44887:CDS
AGAGCTCGGACTCGGTTCAT+AGG 0.446194 5.2:-59338905 None:intergenic
CCATAGAAATAATTTGCATC+TGG 0.448545 5.2:-59338835 None:intergenic
TAAAGGATGTCTTGCTCTAT+GGG 0.453000 5.2:+59339200 MS.gene44887:CDS
TTGGCTTTCATTTAATTGAA+AGG 0.461881 5.2:+59339106 MS.gene44887:CDS
TCAAATGTGTTTGTAAGTCA+TGG 0.466431 5.2:+59338446 MS.gene44887:CDS
TTATTATAGTTCTTCTTCGT+CGG 0.478050 5.2:+59338654 MS.gene44887:CDS
CGAGTCAACAGATGATTACT+TGG 0.478220 5.2:+59338870 MS.gene44887:CDS
TTGCCAAATGATATAGTGTA+TGG 0.486438 5.2:+59339147 MS.gene44887:CDS
AATACAATGTGCAATCGTCT+TGG 0.487961 5.2:+59339268 MS.gene44887:CDS
TGATGGTATGCTATCTCACT+TGG 0.499072 5.2:+59338927 MS.gene44887:CDS
AGATCTTGAATCATCGCTTA+GGG 0.505697 5.2:+59338579 MS.gene44887:CDS
TTAGTGGAGTCGCTCTCAAA+TGG 0.507369 5.2:+59339033 MS.gene44887:CDS
GAACCGAGTCCGAGCTCTGA+TGG 0.517994 5.2:+59338910 MS.gene44887:CDS
TTCTGTATACATAACCTTGA+GGG 0.520895 5.2:-59339463 None:intergenic
TAATGTGTGGAGCGAAATTG+AGG 0.540435 5.2:+59338969 MS.gene44887:CDS
TCAATTCCTGGTGGTGACAG+TGG 0.541479 5.2:+59339495 MS.gene44887:CDS
TAGTTCTTCTTCGTCGGACA+GGG 0.544528 5.2:+59338660 MS.gene44887:CDS
TAAAGGTGCAGTTGAAATAT+GGG 0.548466 5.2:+59339236 MS.gene44887:CDS
TGATAGCGCTTCTTATTCAC+CGG 0.548688 5.2:+59338603 MS.gene44887:CDS
ATACCATCAGAGCTCGGACT+CGG 0.552731 5.2:-59338913 None:intergenic
GATTTCAAAGGTTCATGTAG+AGG 0.552982 5.2:+59338718 MS.gene44887:CDS
GAAATAATTTGCATCTGGAG+TGG 0.573708 5.2:-59338830 None:intergenic
AAACGAATAAGAGACTTGAC+TGG 0.580937 5.2:-59338424 None:intergenic
TGTGTGTCGCGGCAGTAAGT+TGG 0.583141 5.2:-59338510 None:intergenic
TGCAGTTGAAATATGGGTGA+TGG 0.589143 5.2:+59339242 MS.gene44887:CDS
TCTCATTGAGAGCTAATGTG+TGG 0.589751 5.2:+59338956 MS.gene44887:CDS
TCAAACAAAGAACTAGTGTC+CGG 0.590351 5.2:-59338622 None:intergenic
TGTTTGTGAAATCCGGTGGA+TGG 0.595304 5.2:-59338784 None:intergenic
ACTTGACCACTGTCACCACC+AGG 0.596131 5.2:-59339501 None:intergenic
TCCATATTCATTGTCACAGT+AGG 0.596716 5.2:-59339439 None:intergenic
CGTATATGGAATCCATCCAC+CGG 0.597368 5.2:+59338772 MS.gene44887:CDS
GCCAAAAGCAGCGAGTAGGA+AGG 0.602964 5.2:-59339320 None:intergenic
GATGGTATGCTATCTCACTT+GGG 0.616133 5.2:+59338928 MS.gene44887:CDS
CAATGAATATGGATCCCTCA+AGG 0.623502 5.2:+59339449 MS.gene44887:CDS
TTGGCCAAGTATAATGACAA+AGG 0.625260 5.2:+59339396 MS.gene44887:CDS
AATTCTATTGGTGTGTGTCG+CGG 0.629333 5.2:-59338521 None:intergenic
ATTCTGTATACATAACCTTG+AGG 0.635872 5.2:-59339464 None:intergenic
TATTTGTTTGTGAAATCCGG+TGG 0.641042 5.2:-59338788 None:intergenic
GATAGCATACCATCAGAGCT+CGG 0.646205 5.2:-59338919 None:intergenic
TTCGGCCAAAAGCAGCGAGT+AGG 0.672610 5.2:-59339324 None:intergenic
GTGTGGAGCGAAATTGAGGG+TGG 0.690291 5.2:+59338973 MS.gene44887:CDS
TCTCTGCTTTCAATTCCTGG+TGG 0.696103 5.2:+59339486 MS.gene44887:CDS
AATGTGTGGAGCGAAATTGA+GGG 0.700355 5.2:+59338970 MS.gene44887:CDS
TGGATGGATTCCATATACGG+AGG 0.720108 5.2:-59338768 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAAATTGATTTCAA+AGG + chr5.2:59338706-59338725 MS.gene44887:CDS 10.0%
!!! ATTTTAAAAAAATATTTGGG+AGG - chr5.2:59338697-59338716 None:intergenic 15.0%
!! ATTTGAATGATTAACTCAAT+AGG - chr5.2:59338391-59338410 None:intergenic 20.0%
!! TAATCATTCAAATCCTATTA+AGG + chr5.2:59338398-59338417 MS.gene44887:CDS 20.0%
!!! CAAATTATTTCTATGGTTTT+GGG + chr5.2:59338842-59338861 MS.gene44887:CDS 20.0%
! AACAAACATGCATAGTTTAT+TGG + chr5.2:59339377-59339396 MS.gene44887:CDS 25.0%
! AGTTATCAACTGAATTCTAT+TGG - chr5.2:59338536-59338555 None:intergenic 25.0%
! ATAGATAGAGATTCAAGATA+TGG - chr5.2:59338559-59338578 None:intergenic 25.0%
! TAGTAGTGTGTATGAATTAT+GGG + chr5.2:59339173-59339192 MS.gene44887:CDS 25.0%
! TATGAATTATGGGTGTATAA+AGG + chr5.2:59339183-59339202 MS.gene44887:CDS 25.0%
! TTATTATAGTTCTTCTTCGT+CGG + chr5.2:59338654-59338673 MS.gene44887:CDS 25.0%
!! ATATCAATTCGTGTTATTGT+TGG + chr5.2:59339087-59339106 MS.gene44887:CDS 25.0%
!! TTGGCTTTCATTTAATTGAA+AGG + chr5.2:59339106-59339125 MS.gene44887:CDS 25.0%
!!! CCACTTTTTGTATAGTATTT+CGG - chr5.2:59339345-59339364 None:intergenic 25.0%
!!! GCAAATTATTTCTATGGTTT+TGG + chr5.2:59338841-59338860 MS.gene44887:CDS 25.0%
AAATGTGAATTTGCGAAATC+AGG - chr5.2:59338490-59338509 None:intergenic 30.0%
AGGTATTTGTTTGTGAAATC+CGG - chr5.2:59338794-59338813 None:intergenic 30.0%
ATTCTGTATACATAACCTTG+AGG - chr5.2:59339467-59339486 None:intergenic 30.0%
CATAATTCATACACACTACT+AGG - chr5.2:59339174-59339193 None:intergenic 30.0%
CCGAAATACTATACAAAAAG+TGG + chr5.2:59339342-59339361 MS.gene44887:CDS 30.0%
CTAGTAGTGTGTATGAATTA+TGG + chr5.2:59339172-59339191 MS.gene44887:CDS 30.0%
TCAAATGTGTTTGTAAGTCA+TGG + chr5.2:59338446-59338465 MS.gene44887:CDS 30.0%
TTCTGTATACATAACCTTGA+GGG - chr5.2:59339466-59339485 None:intergenic 30.0%
TTGCCAAATGATATAGTGTA+TGG + chr5.2:59339147-59339166 MS.gene44887:CDS 30.0%
! ATAAAGGTGCAGTTGAAATA+TGG + chr5.2:59339235-59339254 MS.gene44887:CDS 30.0%
! CCATAGAAATAATTTGCATC+TGG - chr5.2:59338838-59338857 None:intergenic 30.0%
! TAAAGGTGCAGTTGAAATAT+GGG + chr5.2:59339236-59339255 MS.gene44887:CDS 30.0%
!! CCAGATGCAAATTATTTCTA+TGG + chr5.2:59338835-59338854 MS.gene44887:CDS 30.0%
!! GGACAGTATTTTAAACTTAG+TGG + chr5.2:59339017-59339036 MS.gene44887:CDS 30.0%
AAAATACTGTCCTGCGAATA+AGG - chr5.2:59339009-59339028 None:intergenic 35.0%
AAACGAATAAGAGACTTGAC+TGG - chr5.2:59338427-59338446 None:intergenic 35.0%
AATACAATGTGCAATCGTCT+TGG + chr5.2:59339268-59339287 MS.gene44887:CDS 35.0%
ACAAAAAGTGGTGATATCGT+TGG + chr5.2:59339354-59339373 MS.gene44887:CDS 35.0%
ACTTGACTGGTAACCTTAAT+AGG - chr5.2:59338414-59338433 None:intergenic 35.0%
AGATCTTGAATCATCGCTTA+GGG + chr5.2:59338579-59338598 MS.gene44887:CDS 35.0%
ATAAAGGATGTCTTGCTCTA+TGG + chr5.2:59339199-59339218 MS.gene44887:CDS 35.0%
CTGTCCTTTGTCATTATACT+TGG - chr5.2:59339403-59339422 None:intergenic 35.0%
GATTTCAAAGGTTCATGTAG+AGG + chr5.2:59338718-59338737 MS.gene44887:CDS 35.0%
GGACCATACACTATATCATT+TGG - chr5.2:59339153-59339172 None:intergenic 35.0%
GTGGAATCAAGTGTAGTAAA+AGG - chr5.2:59338814-59338833 None:intergenic 35.0%
TAAAGGATGTCTTGCTCTAT+GGG + chr5.2:59339200-59339219 MS.gene44887:CDS 35.0%
TAGATCTTGAATCATCGCTT+AGG + chr5.2:59338578-59338597 MS.gene44887:CDS 35.0%
TATTTGTTTGTGAAATCCGG+TGG - chr5.2:59338791-59338810 None:intergenic 35.0%
TCAAACAAAGAACTAGTGTC+CGG - chr5.2:59338625-59338644 None:intergenic 35.0%
TCCATATTCATTGTCACAGT+AGG - chr5.2:59339442-59339461 None:intergenic 35.0%
TCCTACTGTGACAATGAATA+TGG + chr5.2:59339438-59339457 MS.gene44887:CDS 35.0%
TTGGCCAAGTATAATGACAA+AGG + chr5.2:59339396-59339415 MS.gene44887:CDS 35.0%
! ACTCTTGTTCTGTCTTTTGA+TGG + chr5.2:59339297-59339316 MS.gene44887:CDS 35.0%
! GAAATAATTTGCATCTGGAG+TGG - chr5.2:59338833-59338852 None:intergenic 35.0%
!! TAAACTTTTGCCTTATTCGC+AGG + chr5.2:59338996-59339015 MS.gene44887:CDS 35.0%
AATGTGTGGAGCGAAATTGA+GGG + chr5.2:59338970-59338989 MS.gene44887:CDS 40.0%
AATTCTATTGGTGTGTGTCG+CGG - chr5.2:59338524-59338543 None:intergenic 40.0%
CAATGAATATGGATCCCTCA+AGG + chr5.2:59339449-59339468 MS.gene44887:CDS 40.0%
CGAGTCAACAGATGATTACT+TGG + chr5.2:59338870-59338889 MS.gene44887:CDS 40.0%
GAATCTCTGCTTTCAATTCC+TGG + chr5.2:59339483-59339502 MS.gene44887:CDS 40.0%
GATGGTATGCTATCTCACTT+GGG + chr5.2:59338928-59338947 MS.gene44887:CDS 40.0%
GTTATTCAAGCCTCCGTATA+TGG + chr5.2:59338758-59338777 MS.gene44887:CDS 40.0%
TAATGTGTGGAGCGAAATTG+AGG + chr5.2:59338969-59338988 MS.gene44887:CDS 40.0%
TCTCATTGAGAGCTAATGTG+TGG + chr5.2:59338956-59338975 MS.gene44887:CDS 40.0%
TGATGGTATGCTATCTCACT+TGG + chr5.2:59338927-59338946 MS.gene44887:CDS 40.0%
TGCAGTTGAAATATGGGTGA+TGG + chr5.2:59339242-59339261 MS.gene44887:CDS 40.0%
TGGGATCTTTCGTCTGATAA+AGG + chr5.2:59339219-59339238 MS.gene44887:CDS 40.0%
! TGATAGCGCTTCTTATTCAC+CGG + chr5.2:59338603-59338622 MS.gene44887:CDS 40.0%
AAATGGTGCTCTTCACTGGT+TGG + chr5.2:59339050-59339069 MS.gene44887:CDS 45.0%
ATAGTTCTTCTTCGTCGGAC+AGG + chr5.2:59338659-59338678 MS.gene44887:CDS 45.0%
CGTATATGGAATCCATCCAC+CGG + chr5.2:59338772-59338791 MS.gene44887:CDS 45.0%
GATAGCATACCATCAGAGCT+CGG - chr5.2:59338922-59338941 None:intergenic 45.0%
TAGTTCTTCTTCGTCGGACA+GGG + chr5.2:59338660-59338679 MS.gene44887:CDS 45.0%
TCTCAAATGGTGCTCTTCAC+TGG + chr5.2:59339046-59339065 MS.gene44887:CDS 45.0%
TCTCTGCTTTCAATTCCTGG+TGG + chr5.2:59339486-59339505 MS.gene44887:CDS 45.0%
TGTTTGTGAAATCCGGTGGA+TGG - chr5.2:59338787-59338806 None:intergenic 45.0%
TTAGTGGAGTCGCTCTCAAA+TGG + chr5.2:59339033-59339052 MS.gene44887:CDS 45.0%
! CGGTGGATGGATTCCATATA+CGG - chr5.2:59338774-59338793 None:intergenic 45.0%
! TGGATGGATTCCATATACGG+AGG - chr5.2:59338771-59338790 None:intergenic 45.0%
!!! ATCAATTTTAAAAAAATATT+TGG - chr5.2:59338701-59338720 None:intergenic 5.0%
!!! TCAATTTTAAAAAAATATTT+GGG - chr5.2:59338700-59338719 None:intergenic 5.0%
ATACCATCAGAGCTCGGACT+CGG - chr5.2:59338916-59338935 None:intergenic 50.0%
! TCAATTCCTGGTGGTGACAG+TGG + chr5.2:59339495-59339514 MS.gene44887:CDS 50.0%
ACTTGACCACTGTCACCACC+AGG - chr5.2:59339504-59339523 None:intergenic 55.0%
GCCAAAAGCAGCGAGTAGGA+AGG - chr5.2:59339323-59339342 None:intergenic 55.0%
GTGTGGAGCGAAATTGAGGG+TGG + chr5.2:59338973-59338992 MS.gene44887:CDS 55.0%
TGTGTGTCGCGGCAGTAAGT+TGG - chr5.2:59338513-59338532 None:intergenic 55.0%
TTCGGCCAAAAGCAGCGAGT+AGG - chr5.2:59339327-59339346 None:intergenic 55.0%
! AGAGCTCGGACTCGGTTCAT+AGG - chr5.2:59338908-59338927 None:intergenic 55.0%
!! GCCTTCCTACTCGCTGCTTT+TGG + chr5.2:59339319-59339338 MS.gene44887:CDS 55.0%
! GAACCGAGTCCGAGCTCTGA+TGG + chr5.2:59338910-59338929 MS.gene44887:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 59338367 59339527 59338367 ID=MS.gene44887
chr5.2 mRNA 59338367 59339527 59338367 ID=MS.gene44887.t1;Parent=MS.gene44887
chr5.2 exon 59338367 59339527 59338367 ID=MS.gene44887.t1.exon1;Parent=MS.gene44887.t1
chr5.2 CDS 59338367 59339527 59338367 ID=cds.MS.gene44887.t1;Parent=MS.gene44887.t1
Gene Sequence

>MS.gene44887

ATGCAGACAGAGACATATCTTCCTATTGAGTTAATCATTCAAATCCTATTAAGGTTACCAGTCAAGTCTCTTATTCGTTTCAAATGTGTTTGTAAGTCATGGTTTTCTCTTATCTCTCAACCTGATTTCGCAAATTCACATTTCCAACTTACTGCCGCGACACACACCAATAGAATTCAGTTGATAACTCCATATCTTGAATCTCTATCTATAGATCTTGAATCATCGCTTAGGGATGATAGCGCTTCTTATTCACCGGACACTAGTTCTTTGTTTGACGATGATGATTATTATAGTTCTTCTTCGTCGGACAGGGATGATTTAATGCCTCCCAAATATTTTTTTAAAATTGATTTCAAAGGTTCATGTAGAGGCTTTATACTTTTGAACTGTTATTCAAGCCTCCGTATATGGAATCCATCCACCGGATTTCACAAACAAATACCTTTTACTACACTTGATTCCACTCCAGATGCAAATTATTTCTATGGTTTTGGGTATGACGAGTCAACAGATGATTACTTGGTGCTTTCAATGTCCTATGAACCGAGTCCGAGCTCTGATGGTATGCTATCTCACTTGGGAATTTTCTCATTGAGAGCTAATGTGTGGAGCGAAATTGAGGGTGGTAAACTTTTGCCTTATTCGCAGGACAGTATTTTAAACTTAGTGGAGTCGCTCTCAAATGGTGCTCTTCACTGGTTGGCTTATCGTGATGATATATCAATTCGTGTTATTGTTGGCTTTCATTTAATTGAAAGGAAACTTCTAGAGTTGCGTTTGCCAAATGATATAGTGTATGGTCCTAGTAGTGTGTATGAATTATGGGTGTATAAAGGATGTCTTGCTCTATGGGATCTTTCGTCTGATAAAGGTGCAGTTGAAATATGGGTGATGGAAAAATACAATGTGCAATCGTCTTGGACTAAGACTCTTGTTCTGTCTTTTGATGGCCTTCCTACTCGCTGCTTTTGGCCGAAATACTATACAAAAAGTGGTGATATCGTTGGAACAAACATGCATAGTTTATTGGCCAAGTATAATGACAAAGGACAGCTGCAAGAGCATCGCTCCTACTGTGACAATGAATATGGATCCCTCAAGGTTATGTATACAGAATCTCTGCTTTCAATTCCTGGTGGTGACAGTGGTCAAGTTTAA

Protein sequence

>MS.gene44887.t1

MQTETYLPIELIIQILLRLPVKSLIRFKCVCKSWFSLISQPDFANSHFQLTAATHTNRIQLITPYLESLSIDLESSLRDDSASYSPDTSSLFDDDDYYSSSSSDRDDLMPPKYFFKIDFKGSCRGFILLNCYSSLRIWNPSTGFHKQIPFTTLDSTPDANYFYGFGYDESTDDYLVLSMSYEPSPSSDGMLSHLGIFSLRANVWSEIEGGKLLPYSQDSILNLVESLSNGALHWLAYRDDISIRVIVGFHLIERKLLELRLPNDIVYGPSSVYELWVYKGCLALWDLSSDKGAVEIWVMEKYNVQSSWTKTLVLSFDGLPTRCFWPKYYTKSGDIVGTNMHSLLAKYNDKGQLQEHRSYCDNEYGSLKVMYTESLLSIPGGDSGQV