Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87562.t1 | XP_003605032.1 | 85.7 | 280 | 39 | 1 | 5 | 283 | 75 | 354 | 1.00E-139 | 506.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87562.t1 | Q8GXC7 | 29.8 | 299 | 171 | 14 | 6 | 275 | 131 | 419 | 2.2e-18 | 94.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87562.t1 | G7JVS7 | 85.7 | 280 | 39 | 1 | 5 | 283 | 75 | 354 | 7.4e-140 | 506.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87562.t1 | MTR_4g023080 | 85.714 | 280 | 39 | 1 | 5 | 283 | 75 | 354 | 5.89e-178 | 494 |
MS.gene87562.t1 | MTR_4g021785 | 81.429 | 280 | 50 | 1 | 5 | 282 | 75 | 354 | 3.48e-168 | 470 |
MS.gene87562.t1 | MTR_4g023130 | 80.505 | 277 | 52 | 2 | 8 | 283 | 38 | 313 | 2.73e-162 | 453 |
MS.gene87562.t1 | MTR_4g023090 | 66.445 | 301 | 77 | 5 | 6 | 282 | 83 | 383 | 9.42e-136 | 389 |
MS.gene87562.t1 | MTR_4g023380 | 66.450 | 307 | 62 | 6 | 6 | 282 | 83 | 378 | 1.61e-133 | 383 |
MS.gene87562.t1 | MTR_4g023070 | 61.258 | 302 | 94 | 3 | 5 | 283 | 69 | 370 | 3.39e-127 | 367 |
MS.gene87562.t1 | MTR_4g023120 | 60.133 | 301 | 97 | 4 | 5 | 282 | 69 | 369 | 1.62e-121 | 352 |
MS.gene87562.t1 | MTR_4g023200 | 62.898 | 283 | 99 | 4 | 5 | 281 | 76 | 358 | 2.87e-117 | 341 |
MS.gene87562.t1 | MTR_4g023150 | 62.191 | 283 | 101 | 4 | 5 | 281 | 76 | 358 | 4.29e-115 | 335 |
MS.gene87562.t1 | MTR_4g023190 | 62.191 | 283 | 100 | 5 | 5 | 281 | 76 | 357 | 7.57e-115 | 335 |
MS.gene87562.t1 | MTR_4g023440 | 62.191 | 283 | 66 | 3 | 5 | 282 | 85 | 331 | 5.89e-114 | 332 |
MS.gene87562.t1 | MTR_3g103020 | 55.782 | 294 | 114 | 7 | 5 | 282 | 84 | 377 | 4.31e-98 | 293 |
MS.gene87562.t1 | MTR_4g109270 | 53.979 | 289 | 122 | 6 | 5 | 282 | 75 | 363 | 1.18e-94 | 283 |
MS.gene87562.t1 | MTR_4g117720 | 52.862 | 297 | 117 | 8 | 5 | 280 | 81 | 375 | 3.16e-92 | 278 |
MS.gene87562.t1 | MTR_4g094365 | 52.649 | 302 | 115 | 9 | 1 | 282 | 70 | 363 | 4.86e-90 | 272 |
MS.gene87562.t1 | MTR_6g060650 | 49.835 | 303 | 126 | 7 | 5 | 283 | 73 | 373 | 4.62e-89 | 270 |
MS.gene87562.t1 | MTR_4g122850 | 54.515 | 299 | 112 | 12 | 5 | 282 | 68 | 363 | 9.68e-89 | 269 |
MS.gene87562.t1 | MTR_4g117770 | 52.560 | 293 | 124 | 6 | 5 | 282 | 74 | 366 | 7.29e-88 | 266 |
MS.gene87562.t1 | MTR_4g117810 | 52.560 | 293 | 124 | 6 | 5 | 282 | 74 | 366 | 7.29e-88 | 266 |
MS.gene87562.t1 | MTR_4g109280 | 51.712 | 292 | 123 | 7 | 5 | 282 | 71 | 358 | 1.84e-87 | 265 |
MS.gene87562.t1 | MTR_8g433040 | 51.877 | 293 | 115 | 6 | 5 | 282 | 82 | 363 | 2.01e-87 | 265 |
MS.gene87562.t1 | MTR_8g032380 | 51.877 | 293 | 115 | 6 | 5 | 282 | 82 | 363 | 2.01e-87 | 265 |
MS.gene87562.t1 | MTR_4g116330 | 54.475 | 257 | 107 | 4 | 34 | 280 | 121 | 377 | 8.17e-86 | 261 |
MS.gene87562.t1 | MTR_3g034180 | 52.475 | 303 | 116 | 9 | 5 | 282 | 189 | 488 | 5.59e-84 | 260 |
MS.gene87562.t1 | MTR_4g117780 | 51.195 | 293 | 128 | 7 | 5 | 282 | 74 | 366 | 1.20e-82 | 253 |
MS.gene87562.t1 | MTR_4g117870 | 50.871 | 287 | 94 | 9 | 5 | 279 | 12 | 263 | 2.48e-80 | 244 |
MS.gene87562.t1 | MTR_3g034130 | 51.786 | 280 | 110 | 7 | 5 | 261 | 75 | 352 | 3.39e-80 | 247 |
MS.gene87562.t1 | MTR_3g034160 | 51.333 | 300 | 120 | 8 | 5 | 280 | 75 | 372 | 7.35e-80 | 246 |
MS.gene87562.t1 | MTR_8g032390 | 54.406 | 261 | 99 | 9 | 35 | 278 | 113 | 370 | 5.26e-79 | 244 |
MS.gene87562.t1 | MTR_4g117850 | 49.829 | 293 | 124 | 9 | 5 | 280 | 90 | 376 | 1.30e-77 | 240 |
MS.gene87562.t1 | MTR_5g070130 | 46.259 | 294 | 136 | 8 | 5 | 276 | 76 | 369 | 1.06e-76 | 238 |
MS.gene87562.t1 | MTR_5g070088 | 47.826 | 276 | 123 | 6 | 24 | 281 | 111 | 383 | 1.89e-75 | 235 |
MS.gene87562.t1 | MTR_4g118380 | 47.350 | 283 | 114 | 6 | 5 | 254 | 73 | 353 | 2.83e-73 | 229 |
MS.gene87562.t1 | MTR_4g116320 | 57.674 | 215 | 75 | 5 | 80 | 280 | 43 | 255 | 6.08e-72 | 222 |
MS.gene87562.t1 | MTR_5g097210 | 49.645 | 282 | 120 | 10 | 15 | 280 | 85 | 360 | 2.44e-71 | 224 |
MS.gene87562.t1 | MTR_5g070080 | 48.708 | 271 | 119 | 8 | 26 | 280 | 116 | 382 | 3.44e-71 | 224 |
MS.gene87562.t1 | MTR_1g055195 | 48.029 | 279 | 119 | 11 | 14 | 276 | 203 | 471 | 1.35e-68 | 220 |
MS.gene87562.t1 | MTR_8g433030 | 56.019 | 216 | 79 | 8 | 76 | 278 | 125 | 337 | 1.99e-66 | 211 |
MS.gene87562.t1 | MTR_4g121580 | 46.619 | 281 | 100 | 11 | 23 | 283 | 99 | 349 | 1.21e-65 | 210 |
MS.gene87562.t1 | MTR_1g055135 | 45.051 | 293 | 130 | 10 | 14 | 282 | 89 | 374 | 2.65e-65 | 209 |
MS.gene87562.t1 | MTR_4g116330 | 46.875 | 256 | 89 | 4 | 34 | 280 | 121 | 338 | 2.67e-64 | 205 |
MS.gene87562.t1 | MTR_4g118400 | 45.455 | 253 | 115 | 5 | 27 | 276 | 61 | 293 | 1.23e-62 | 199 |
MS.gene87562.t1 | MTR_6g463430 | 57.592 | 191 | 70 | 5 | 97 | 281 | 15 | 200 | 1.18e-61 | 194 |
MS.gene87562.t1 | MTR_4g117750 | 44.631 | 298 | 131 | 10 | 5 | 279 | 69 | 355 | 3.25e-60 | 199 |
MS.gene87562.t1 | MTR_4g117750 | 55.046 | 109 | 47 | 1 | 175 | 281 | 373 | 481 | 1.61e-29 | 116 |
MS.gene87562.t1 | MTR_8g040935 | 53.571 | 196 | 82 | 4 | 96 | 282 | 12 | 207 | 1.50e-58 | 186 |
MS.gene87562.t1 | MTR_7g079370 | 40.727 | 275 | 130 | 9 | 31 | 276 | 79 | 349 | 4.17e-58 | 190 |
MS.gene87562.t1 | MTR_7g079400 | 43.617 | 282 | 132 | 9 | 23 | 282 | 60 | 336 | 1.23e-57 | 188 |
MS.gene87562.t1 | MTR_4g117530 | 44.068 | 236 | 95 | 4 | 54 | 282 | 47 | 252 | 3.96e-53 | 174 |
MS.gene87562.t1 | MTR_4g118370 | 44.355 | 248 | 99 | 10 | 49 | 280 | 33 | 257 | 1.12e-52 | 172 |
MS.gene87562.t1 | MTR_1g055165 | 38.790 | 281 | 122 | 8 | 9 | 282 | 80 | 317 | 6.46e-52 | 172 |
MS.gene87562.t1 | MTR_8g102520 | 41.634 | 257 | 122 | 7 | 47 | 282 | 72 | 321 | 2.03e-51 | 171 |
MS.gene87562.t1 | MTR_1g055250 | 42.991 | 214 | 105 | 7 | 70 | 270 | 44 | 253 | 3.39e-48 | 163 |
MS.gene87562.t1 | MTR_4g114700 | 40.000 | 260 | 90 | 7 | 33 | 273 | 5 | 217 | 1.34e-45 | 154 |
MS.gene87562.t1 | MTR_4g117430 | 54.605 | 152 | 67 | 2 | 37 | 186 | 3 | 154 | 7.17e-44 | 147 |
MS.gene87562.t1 | MTR_1g055175 | 44.444 | 198 | 93 | 9 | 97 | 282 | 8 | 200 | 2.06e-42 | 144 |
MS.gene87562.t1 | MTR_8g013010 | 45.455 | 198 | 92 | 5 | 5 | 189 | 120 | 314 | 4.22e-42 | 147 |
MS.gene87562.t1 | MTR_2g048580 | 37.736 | 265 | 132 | 11 | 24 | 276 | 92 | 335 | 7.84e-42 | 147 |
MS.gene87562.t1 | MTR_7g079420 | 38.521 | 257 | 116 | 12 | 36 | 275 | 905 | 1136 | 7.11e-37 | 139 |
MS.gene87562.t1 | MTR_5g023000 | 64.948 | 97 | 32 | 1 | 188 | 282 | 2 | 98 | 1.47e-35 | 123 |
MS.gene87562.t1 | MTR_4g118360 | 60.000 | 110 | 36 | 3 | 175 | 280 | 18 | 123 | 3.80e-33 | 118 |
MS.gene87562.t1 | MTR_7g117720 | 51.908 | 131 | 49 | 4 | 5 | 121 | 57 | 187 | 5.52e-32 | 119 |
MS.gene87562.t1 | MTR_7g117720 | 57.000 | 100 | 36 | 3 | 183 | 276 | 172 | 270 | 2.24e-25 | 102 |
MS.gene87562.t1 | MTR_4g116340 | 49.324 | 148 | 61 | 3 | 18 | 151 | 100 | 247 | 1.26e-31 | 118 |
MS.gene87562.t1 | MTR_8g098830 | 40.000 | 195 | 85 | 8 | 69 | 254 | 23 | 194 | 6.39e-31 | 115 |
MS.gene87562.t1 | MTR_4g023430 | 70.000 | 80 | 19 | 1 | 208 | 282 | 142 | 221 | 4.23e-29 | 110 |
MS.gene87562.t1 | MTR_7g079450 | 43.972 | 141 | 71 | 4 | 145 | 282 | 1 | 136 | 4.01e-27 | 102 |
MS.gene87562.t1 | MTR_6g034720 | 39.474 | 152 | 71 | 4 | 25 | 162 | 25 | 169 | 5.75e-26 | 102 |
MS.gene87562.t1 | MTR_4g122860 | 40.741 | 189 | 77 | 7 | 103 | 282 | 157 | 319 | 6.21e-26 | 105 |
MS.gene87562.t1 | MTR_5g097330 | 27.500 | 280 | 161 | 8 | 30 | 276 | 129 | 399 | 2.65e-22 | 95.9 |
MS.gene87562.t1 | MTR_1g097560 | 29.779 | 272 | 157 | 16 | 20 | 275 | 120 | 373 | 1.02e-21 | 94.0 |
MS.gene87562.t1 | MTR_4g117550 | 29.032 | 279 | 132 | 11 | 38 | 281 | 127 | 374 | 3.88e-21 | 92.0 |
MS.gene87562.t1 | MTR_4g133170 | 26.316 | 247 | 148 | 9 | 30 | 248 | 86 | 326 | 7.21e-21 | 91.7 |
MS.gene87562.t1 | MTR_1g094210 | 29.741 | 232 | 145 | 9 | 34 | 255 | 154 | 377 | 1.01e-20 | 91.3 |
MS.gene87562.t1 | MTR_1g050542 | 27.155 | 232 | 147 | 10 | 34 | 248 | 148 | 374 | 1.77e-20 | 90.5 |
MS.gene87562.t1 | MTR_3g036290 | 31.349 | 252 | 149 | 10 | 34 | 275 | 119 | 356 | 1.89e-20 | 90.1 |
MS.gene87562.t1 | MTR_1g097490 | 29.455 | 275 | 158 | 13 | 20 | 275 | 133 | 390 | 2.04e-20 | 90.5 |
MS.gene87562.t1 | MTR_0129s0050 | 27.517 | 298 | 152 | 9 | 38 | 280 | 120 | 408 | 3.56e-20 | 89.7 |
MS.gene87562.t1 | MTR_2g026010 | 28.214 | 280 | 167 | 10 | 34 | 280 | 90 | 368 | 1.29e-19 | 88.2 |
MS.gene87562.t1 | MTR_4g023100 | 75.926 | 54 | 13 | 0 | 229 | 282 | 65 | 118 | 1.64e-19 | 82.4 |
MS.gene87562.t1 | MTR_1g094210 | 28.627 | 255 | 163 | 10 | 34 | 277 | 154 | 400 | 1.78e-19 | 87.8 |
MS.gene87562.t1 | MTR_2g425980 | 29.181 | 281 | 156 | 10 | 34 | 274 | 98 | 375 | 3.48e-19 | 87.0 |
MS.gene87562.t1 | MTR_2g426070 | 30.040 | 253 | 138 | 11 | 34 | 251 | 105 | 353 | 5.47e-19 | 86.3 |
MS.gene87562.t1 | MTR_2g028130 | 29.630 | 243 | 132 | 10 | 34 | 240 | 106 | 345 | 1.05e-18 | 85.5 |
MS.gene87562.t1 | MTR_2g021770 | 28.159 | 277 | 141 | 10 | 51 | 280 | 142 | 407 | 1.68e-18 | 85.1 |
MS.gene87562.t1 | MTR_2g021800 | 27.622 | 286 | 159 | 10 | 35 | 276 | 131 | 412 | 2.95e-18 | 84.3 |
MS.gene87562.t1 | MTR_2g022000 | 28.014 | 282 | 155 | 10 | 35 | 272 | 130 | 407 | 3.57e-18 | 84.3 |
MS.gene87562.t1 | MTR_3g007330 | 30.000 | 230 | 129 | 10 | 9 | 215 | 108 | 328 | 4.67e-18 | 83.6 |
MS.gene87562.t1 | MTR_2g025960 | 30.342 | 234 | 127 | 9 | 34 | 233 | 5 | 236 | 5.13e-18 | 82.8 |
MS.gene87562.t1 | MTR_7g070880 | 27.273 | 308 | 147 | 15 | 16 | 256 | 101 | 398 | 5.22e-18 | 83.6 |
MS.gene87562.t1 | MTR_0128s0020 | 28.623 | 276 | 159 | 11 | 34 | 274 | 120 | 392 | 7.35e-18 | 83.2 |
MS.gene87562.t1 | MTR_0129s0070 | 26.761 | 284 | 148 | 11 | 38 | 276 | 124 | 392 | 1.18e-17 | 82.4 |
MS.gene87562.t1 | MTR_2g025420 | 27.835 | 291 | 157 | 12 | 34 | 275 | 106 | 392 | 1.89e-17 | 82.0 |
MS.gene87562.t1 | MTR_4g070550 | 28.448 | 232 | 125 | 10 | 17 | 210 | 83 | 311 | 3.69e-17 | 81.3 |
MS.gene87562.t1 | MTR_8g012090 | 28.936 | 235 | 127 | 9 | 30 | 248 | 121 | 331 | 4.65e-17 | 80.1 |
MS.gene87562.t1 | MTR_0667s0010 | 27.500 | 240 | 134 | 9 | 18 | 222 | 80 | 314 | 4.73e-17 | 80.9 |
MS.gene87562.t1 | MTR_2g055970 | 27.652 | 264 | 171 | 12 | 28 | 275 | 301 | 560 | 5.76e-17 | 80.9 |
MS.gene87562.t1 | MTR_4g030830 | 26.370 | 292 | 165 | 10 | 29 | 275 | 107 | 393 | 5.95e-17 | 80.5 |
MS.gene87562.t1 | MTR_2g078870 | 32.973 | 185 | 105 | 11 | 35 | 210 | 58 | 232 | 7.76e-17 | 79.3 |
MS.gene87562.t1 | MTR_1g097330 | 28.311 | 219 | 139 | 9 | 34 | 238 | 109 | 323 | 8.47e-17 | 80.1 |
MS.gene87562.t1 | MTR_5g037680 | 27.206 | 272 | 168 | 12 | 26 | 275 | 118 | 381 | 1.08e-16 | 80.1 |
MS.gene87562.t1 | MTR_2g426020 | 26.071 | 280 | 164 | 11 | 34 | 274 | 100 | 375 | 1.38e-16 | 79.3 |
MS.gene87562.t1 | MTR_1g068835 | 27.711 | 249 | 151 | 10 | 30 | 252 | 87 | 332 | 1.71e-16 | 79.0 |
MS.gene87562.t1 | MTR_4g028510 | 26.761 | 284 | 166 | 10 | 34 | 278 | 120 | 400 | 2.22e-16 | 79.0 |
MS.gene87562.t1 | MTR_3g013740 | 28.326 | 233 | 133 | 8 | 8 | 222 | 134 | 350 | 2.99e-16 | 78.6 |
MS.gene87562.t1 | MTR_4g122840 | 42.963 | 135 | 38 | 5 | 152 | 282 | 164 | 263 | 3.10e-16 | 77.0 |
MS.gene87562.t1 | MTR_2g024100 | 29.508 | 244 | 128 | 10 | 18 | 223 | 82 | 319 | 3.24e-16 | 78.6 |
MS.gene87562.t1 | MTR_2g028140 | 26.721 | 247 | 142 | 9 | 30 | 238 | 103 | 348 | 4.66e-16 | 77.8 |
MS.gene87562.t1 | MTR_7g070440 | 30.876 | 217 | 116 | 8 | 34 | 219 | 97 | 310 | 8.38e-16 | 77.0 |
MS.gene87562.t1 | MTR_4g107820 | 27.037 | 270 | 153 | 12 | 34 | 275 | 132 | 385 | 8.39e-16 | 77.0 |
MS.gene87562.t1 | MTR_4g107780 | 27.037 | 270 | 153 | 12 | 34 | 275 | 132 | 385 | 8.39e-16 | 77.0 |
MS.gene87562.t1 | MTR_4g107820 | 27.037 | 270 | 153 | 12 | 34 | 275 | 132 | 385 | 1.09e-15 | 77.0 |
MS.gene87562.t1 | MTR_4g107780 | 27.037 | 270 | 153 | 12 | 34 | 275 | 132 | 385 | 1.22e-15 | 76.6 |
MS.gene87562.t1 | MTR_7g079640 | 29.032 | 217 | 126 | 8 | 50 | 248 | 136 | 342 | 1.31e-15 | 76.6 |
MS.gene87562.t1 | MTR_1g055200 | 50.000 | 80 | 31 | 2 | 33 | 104 | 5 | 83 | 1.80e-15 | 71.2 |
MS.gene87562.t1 | MTR_2g028160 | 28.814 | 236 | 129 | 11 | 34 | 233 | 106 | 338 | 2.17e-15 | 75.9 |
MS.gene87562.t1 | MTR_2g021150 | 31.193 | 218 | 131 | 11 | 34 | 236 | 115 | 328 | 2.67e-15 | 75.5 |
MS.gene87562.t1 | MTR_7g407070 | 27.757 | 263 | 143 | 12 | 6 | 236 | 114 | 361 | 3.13e-15 | 75.5 |
MS.gene87562.t1 | MTR_5g069390 | 26.690 | 281 | 164 | 11 | 34 | 280 | 145 | 417 | 3.22e-15 | 75.9 |
MS.gene87562.t1 | MTR_6g090180 | 24.306 | 288 | 168 | 8 | 34 | 276 | 152 | 434 | 5.05e-15 | 75.1 |
MS.gene87562.t1 | MTR_5g057790 | 32.692 | 208 | 112 | 12 | 34 | 224 | 142 | 338 | 5.11e-15 | 74.7 |
MS.gene87562.t1 | MTR_5g059430 | 23.792 | 269 | 162 | 9 | 47 | 280 | 166 | 426 | 5.11e-15 | 75.1 |
MS.gene87562.t1 | MTR_3g014540 | 31.863 | 204 | 111 | 9 | 31 | 214 | 120 | 315 | 7.89e-15 | 74.3 |
MS.gene87562.t1 | MTR_7g070830 | 27.208 | 283 | 136 | 13 | 16 | 236 | 101 | 375 | 8.61e-15 | 74.3 |
MS.gene87562.t1 | MTR_2g021155 | 28.216 | 241 | 140 | 12 | 31 | 248 | 127 | 357 | 1.89e-14 | 73.9 |
MS.gene87562.t1 | MTR_2g031720 | 25.667 | 300 | 188 | 11 | 12 | 282 | 79 | 372 | 1.91e-14 | 73.2 |
MS.gene87562.t1 | MTR_2g047832 | 26.953 | 256 | 147 | 11 | 34 | 253 | 126 | 377 | 1.95e-14 | 73.2 |
MS.gene87562.t1 | MTR_7g066850 | 25.753 | 299 | 169 | 13 | 34 | 283 | 122 | 416 | 1.97e-14 | 73.2 |
MS.gene87562.t1 | MTR_1g068875 | 27.984 | 243 | 146 | 11 | 18 | 236 | 77 | 314 | 2.01e-14 | 73.2 |
MS.gene87562.t1 | MTR_5g097350 | 25.600 | 250 | 153 | 8 | 48 | 276 | 146 | 383 | 2.27e-14 | 72.8 |
MS.gene87562.t1 | MTR_5g022850 | 26.148 | 283 | 172 | 8 | 34 | 281 | 74 | 354 | 2.31e-14 | 72.8 |
MS.gene87562.t1 | MTR_7g111700 | 27.799 | 259 | 161 | 9 | 30 | 276 | 117 | 361 | 2.63e-14 | 72.4 |
MS.gene87562.t1 | MTR_8g099460 | 27.778 | 216 | 122 | 8 | 30 | 214 | 89 | 301 | 3.41e-14 | 72.4 |
MS.gene87562.t1 | MTR_6g021880 | 26.718 | 262 | 169 | 8 | 35 | 275 | 122 | 381 | 4.28e-14 | 72.0 |
MS.gene87562.t1 | MTR_3g083010 | 27.004 | 237 | 134 | 8 | 34 | 233 | 108 | 342 | 5.23e-14 | 72.0 |
MS.gene87562.t1 | MTR_7g055930 | 25.253 | 297 | 145 | 11 | 23 | 248 | 105 | 395 | 8.78e-14 | 71.2 |
MS.gene87562.t1 | MTR_0054s0090 | 23.183 | 289 | 173 | 8 | 34 | 278 | 121 | 404 | 9.60e-14 | 71.2 |
MS.gene87562.t1 | MTR_1004s0010 | 32.778 | 180 | 109 | 8 | 35 | 211 | 119 | 289 | 1.11e-13 | 70.9 |
MS.gene87562.t1 | MTR_0760s0010 | 32.778 | 180 | 109 | 8 | 35 | 211 | 149 | 319 | 1.15e-13 | 70.9 |
MS.gene87562.t1 | MTR_1g068860 | 27.600 | 250 | 152 | 10 | 34 | 256 | 91 | 338 | 1.27e-13 | 70.5 |
MS.gene87562.t1 | MTR_8g101580 | 24.314 | 255 | 172 | 9 | 38 | 275 | 144 | 394 | 1.50e-13 | 70.5 |
MS.gene87562.t1 | MTR_5g064700 | 22.909 | 275 | 164 | 7 | 50 | 280 | 98 | 368 | 1.94e-13 | 70.1 |
MS.gene87562.t1 | MTR_2g021050 | 27.372 | 274 | 134 | 14 | 20 | 252 | 78 | 327 | 2.12e-13 | 70.1 |
MS.gene87562.t1 | MTR_8g464770 | 27.138 | 269 | 161 | 10 | 34 | 276 | 117 | 376 | 2.62e-13 | 69.7 |
MS.gene87562.t1 | MTR_3g010390 | 29.242 | 277 | 150 | 17 | 32 | 275 | 134 | 397 | 2.66e-13 | 69.7 |
MS.gene87562.t1 | MTR_4g130330 | 24.042 | 287 | 173 | 11 | 34 | 278 | 106 | 389 | 2.74e-13 | 69.7 |
MS.gene87562.t1 | MTR_8g013005 | 60.714 | 56 | 20 | 1 | 229 | 282 | 3 | 58 | 3.03e-13 | 63.5 |
MS.gene87562.t1 | MTR_4g028680 | 24.113 | 282 | 174 | 8 | 34 | 278 | 120 | 398 | 3.87e-13 | 69.3 |
MS.gene87562.t1 | MTR_0128s0070 | 27.309 | 249 | 153 | 9 | 51 | 274 | 150 | 395 | 3.91e-13 | 69.3 |
MS.gene87562.t1 | MTR_6g086825 | 24.601 | 313 | 184 | 9 | 12 | 281 | 158 | 461 | 4.02e-13 | 69.3 |
MS.gene87562.t1 | MTR_5g096630 | 24.597 | 248 | 142 | 9 | 48 | 254 | 143 | 386 | 4.09e-13 | 69.3 |
MS.gene87562.t1 | MTR_2g104280 | 25.000 | 288 | 166 | 10 | 38 | 281 | 125 | 406 | 5.14e-13 | 68.9 |
MS.gene87562.t1 | MTR_3g011100 | 27.703 | 296 | 163 | 13 | 17 | 275 | 320 | 601 | 5.32e-13 | 69.3 |
MS.gene87562.t1 | MTR_5g097680 | 22.628 | 274 | 166 | 7 | 50 | 281 | 159 | 428 | 6.71e-13 | 68.6 |
MS.gene87562.t1 | MTR_7g069550 | 26.172 | 256 | 131 | 10 | 34 | 245 | 123 | 364 | 8.35e-13 | 68.2 |
MS.gene87562.t1 | MTR_8g064890 | 25.820 | 244 | 138 | 9 | 23 | 235 | 110 | 341 | 1.03e-12 | 68.2 |
MS.gene87562.t1 | MTR_0054s0100 | 23.024 | 291 | 173 | 8 | 34 | 278 | 121 | 406 | 1.11e-12 | 67.8 |
MS.gene87562.t1 | MTR_7g056503 | 25.874 | 286 | 161 | 14 | 34 | 275 | 119 | 397 | 1.17e-12 | 67.8 |
MS.gene87562.t1 | MTR_3g011060 | 29.798 | 198 | 107 | 8 | 34 | 214 | 142 | 324 | 1.24e-12 | 67.8 |
MS.gene87562.t1 | MTR_8g041270 | 24.567 | 289 | 163 | 9 | 38 | 280 | 127 | 406 | 1.42e-12 | 67.8 |
MS.gene87562.t1 | MTR_8g039500 | 26.217 | 267 | 160 | 9 | 7 | 245 | 83 | 340 | 1.78e-12 | 67.0 |
MS.gene87562.t1 | MTR_3g006670 | 30.097 | 206 | 96 | 10 | 34 | 210 | 146 | 332 | 1.82e-12 | 67.4 |
MS.gene87562.t1 | MTR_2g031680 | 24.400 | 250 | 159 | 9 | 30 | 252 | 87 | 333 | 1.91e-12 | 67.0 |
MS.gene87562.t1 | MTR_1g112010 | 23.810 | 231 | 147 | 8 | 34 | 248 | 78 | 295 | 2.34e-12 | 66.6 |
MS.gene87562.t1 | MTR_8g063370 | 27.602 | 221 | 132 | 8 | 38 | 235 | 127 | 342 | 2.90e-12 | 66.6 |
MS.gene87562.t1 | MTR_5g057690 | 31.373 | 204 | 110 | 9 | 34 | 224 | 142 | 328 | 3.16e-12 | 66.6 |
MS.gene87562.t1 | MTR_2g066170 | 27.876 | 226 | 126 | 9 | 48 | 245 | 133 | 349 | 3.35e-12 | 66.6 |
MS.gene87562.t1 | MTR_7g078860 | 30.769 | 208 | 109 | 10 | 34 | 215 | 122 | 320 | 3.38e-12 | 66.6 |
MS.gene87562.t1 | MTR_5g096710 | 27.190 | 331 | 170 | 18 | 6 | 275 | 78 | 398 | 3.38e-12 | 66.6 |
MS.gene87562.t1 | MTR_3g011120 | 26.126 | 222 | 132 | 7 | 48 | 248 | 136 | 346 | 3.45e-12 | 66.2 |
MS.gene87562.t1 | MTR_7g017040 | 23.151 | 311 | 186 | 13 | 12 | 281 | 101 | 399 | 4.13e-12 | 66.2 |
MS.gene87562.t1 | MTR_5g086590 | 25.532 | 235 | 142 | 10 | 43 | 255 | 9 | 232 | 6.52e-12 | 64.3 |
MS.gene87562.t1 | MTR_0128s0010 | 27.778 | 288 | 161 | 14 | 30 | 275 | 115 | 397 | 7.77e-12 | 65.5 |
MS.gene87562.t1 | MTR_2g029990 | 27.376 | 263 | 160 | 13 | 34 | 275 | 150 | 402 | 1.10e-11 | 65.1 |
MS.gene87562.t1 | MTR_2g010900 | 30.263 | 228 | 118 | 11 | 34 | 223 | 79 | 303 | 1.29e-11 | 64.7 |
MS.gene87562.t1 | MTR_3g023930 | 27.381 | 252 | 158 | 11 | 35 | 275 | 130 | 367 | 1.72e-11 | 64.3 |
MS.gene87562.t1 | MTR_4g055820 | 25.630 | 238 | 132 | 7 | 38 | 235 | 124 | 356 | 1.83e-11 | 64.3 |
MS.gene87562.t1 | MTR_2g078900 | 30.435 | 184 | 113 | 9 | 35 | 210 | 133 | 309 | 1.85e-11 | 64.3 |
MS.gene87562.t1 | MTR_7g066100 | 25.862 | 290 | 166 | 14 | 34 | 276 | 107 | 394 | 2.27e-11 | 63.9 |
MS.gene87562.t1 | MTR_7g009265 | 25.000 | 292 | 158 | 13 | 16 | 250 | 9 | 296 | 2.43e-11 | 63.5 |
MS.gene87562.t1 | MTR_3g083640 | 26.241 | 282 | 169 | 17 | 13 | 275 | 141 | 402 | 2.53e-11 | 63.9 |
MS.gene87562.t1 | MTR_3g013770 | 25.573 | 262 | 167 | 9 | 18 | 259 | 121 | 374 | 2.82e-11 | 63.5 |
MS.gene87562.t1 | MTR_0649s0020 | 26.736 | 288 | 164 | 13 | 32 | 275 | 103 | 387 | 2.95e-11 | 63.5 |
MS.gene87562.t1 | MTR_2g078850 | 29.630 | 189 | 111 | 9 | 35 | 210 | 130 | 309 | 3.02e-11 | 63.5 |
MS.gene87562.t1 | MTR_5g074800 | 25.623 | 281 | 157 | 11 | 34 | 272 | 66 | 336 | 3.24e-11 | 63.2 |
MS.gene87562.t1 | MTR_5g022420 | 24.123 | 228 | 152 | 9 | 34 | 248 | 122 | 341 | 3.35e-11 | 63.5 |
MS.gene87562.t1 | MTR_2g046900 | 24.800 | 250 | 148 | 12 | 34 | 253 | 125 | 364 | 3.35e-11 | 63.5 |
MS.gene87562.t1 | MTR_3g009300 | 25.182 | 274 | 167 | 14 | 28 | 275 | 91 | 352 | 3.83e-11 | 63.2 |
MS.gene87562.t1 | MTR_2g021190 | 28.033 | 239 | 139 | 13 | 34 | 250 | 118 | 345 | 3.97e-11 | 63.2 |
MS.gene87562.t1 | MTR_2g021950 | 25.769 | 260 | 152 | 9 | 50 | 276 | 142 | 393 | 4.92e-11 | 63.2 |
MS.gene87562.t1 | MTR_2g461450 | 25.726 | 241 | 149 | 8 | 21 | 236 | 95 | 330 | 5.23e-11 | 62.8 |
MS.gene87562.t1 | MTR_5g046280 | 30.286 | 175 | 108 | 7 | 48 | 215 | 20 | 187 | 5.68e-11 | 62.0 |
MS.gene87562.t1 | MTR_5g069760 | 25.828 | 302 | 155 | 15 | 26 | 276 | 87 | 370 | 5.90e-11 | 62.8 |
MS.gene87562.t1 | MTR_4g037465 | 27.174 | 276 | 156 | 14 | 26 | 263 | 112 | 380 | 6.46e-11 | 62.8 |
MS.gene87562.t1 | MTR_7g066030 | 26.190 | 294 | 160 | 16 | 34 | 276 | 116 | 403 | 6.53e-11 | 62.8 |
MS.gene87562.t1 | MTR_4g014370 | 23.630 | 292 | 163 | 13 | 36 | 278 | 127 | 407 | 7.66e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87562.t1 | AT3G06240 | 30.435 | 276 | 143 | 13 | 30 | 275 | 163 | 419 | 4.95e-20 | 89.7 |
MS.gene87562.t1 | AT3G23880 | 26.778 | 239 | 150 | 13 | 23 | 248 | 105 | 331 | 8.42e-12 | 65.1 |
Find 63 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTGTTGCGTTTGATTTAA+TGG | 0.053312 | 4.1:-75233797 | MS.gene87562:CDS |
AGAAGAGGGTTTCTATTTAA+TGG | 0.205084 | 4.1:-75233865 | MS.gene87562:CDS |
ATTTATAGTTTGTGGGTATT+TGG | 0.229145 | 4.1:-75233724 | MS.gene87562:CDS |
CCTCCAAATGTGATGAATAA+TGG | 0.261297 | 4.1:+75233962 | None:intergenic |
TTGGAGAATTTCTCAGTCTA+TGG | 0.267319 | 4.1:-75233705 | MS.gene87562:CDS |
TTCAACCGGAAAATAAGATT+TGG | 0.283708 | 4.1:+75234167 | None:intergenic |
GAAGAGGGTTTCTATTTAAT+GGG | 0.288223 | 4.1:-75233864 | MS.gene87562:CDS |
AATGATAAAGGACAGCTATT+AGG | 0.296978 | 4.1:-75233496 | MS.gene87562:CDS |
ATGACAACGTGCTACTGATT+TGG | 0.309667 | 4.1:+75234035 | None:intergenic |
ATAATGATACAATTGTAATA+TGG | 0.317748 | 4.1:-75233669 | MS.gene87562:CDS |
ATGATAAAGGACAGCTATTA+GGG | 0.324057 | 4.1:-75233495 | MS.gene87562:CDS |
TATTTAATGGGGTTATTCAT+TGG | 0.326421 | 4.1:-75233852 | MS.gene87562:CDS |
TTCCCATTATTCATCACATT+TGG | 0.328932 | 4.1:-75233965 | MS.gene87562:CDS |
CTCCAAATGTGATGAATAAT+GGG | 0.343815 | 4.1:+75233963 | None:intergenic |
AGTACCATCAATTTCTTTCC+AGG | 0.345615 | 4.1:+75233918 | None:intergenic |
ACAAACTATAAATAAATCTA+TGG | 0.347175 | 4.1:+75233734 | None:intergenic |
GTAGCACGTTGTCATGGTTT+TGG | 0.348579 | 4.1:-75234027 | MS.gene87562:CDS |
TGCGTTTGATTTAATGGAAA+AGG | 0.373025 | 4.1:-75233791 | MS.gene87562:CDS |
GGATTCCATATGTAGATGTT+TGG | 0.378467 | 4.1:+75234102 | None:intergenic |
TTATCGCAGTGTATTGGATT+TGG | 0.379478 | 4.1:-75233824 | MS.gene87562:CDS |
ATAGATTTATTTATAGTTTG+TGG | 0.394686 | 4.1:-75233732 | MS.gene87562:CDS |
GAGTCTCTGCTTTCACTACT+TGG | 0.396116 | 4.1:-75233427 | MS.gene87562:CDS |
TCAACCGGAAAATAAGATTT+GGG | 0.405876 | 4.1:+75234168 | None:intergenic |
TAATGGGGTTATTCATTGGC+TGG | 0.411512 | 4.1:-75233848 | MS.gene87562:CDS |
GCTGGCTTATCGCAGTGTAT+TGG | 0.416135 | 4.1:-75233830 | MS.gene87562:CDS |
CCATTATTCATCACATTTGG+AGG | 0.425358 | 4.1:-75233962 | MS.gene87562:CDS |
TCCTTACCTTGATTCCCCAT+TGG | 0.438117 | 4.1:+75235012 | None:intergenic |
TTGGTTAAGTATAATGATAA+AGG | 0.441235 | 4.1:-75233508 | MS.gene87562:CDS |
ACGAAATCATGGTAATAGAT+TGG | 0.441244 | 4.1:-75233527 | MS.gene87562:CDS |
TAGATTTATTTATAGTTTGT+GGG | 0.445723 | 4.1:-75233731 | MS.gene87562:CDS |
CATGAACCTCTAAATTCAAC+CGG | 0.449781 | 4.1:+75234153 | None:intergenic |
AACTTCCAAACATCTACATA+TGG | 0.472709 | 4.1:-75234107 | MS.gene87562:CDS |
TACATATGGAATCCATCTAC+TGG | 0.475293 | 4.1:-75234093 | MS.gene87562:CDS |
TGGTTAAAATCACTTGGAAC+AGG | 0.477567 | 4.1:+75233754 | None:intergenic |
CCAGTCAAGAGATGATTACT+TGG | 0.479956 | 4.1:-75233998 | MS.gene87562:CDS |
ATAGGTTGAAAGTAGTGATC+AGG | 0.481665 | 4.1:+75233580 | None:intergenic |
TAATGATACAATTGTAATAT+GGG | 0.482436 | 4.1:-75233668 | MS.gene87562:CDS |
GATATTATTGGACGAAATCA+TGG | 0.484083 | 4.1:-75233538 | MS.gene87562:CDS |
ATATGTAGATGTTTGGAAGT+TGG | 0.487491 | 4.1:+75234109 | None:intergenic |
TGGAGAATTTCTCAGTCTAT+GGG | 0.490268 | 4.1:-75233704 | MS.gene87562:CDS |
TTCAGATTGACTGTTACAAA+AGG | 0.493628 | 4.1:+75233465 | None:intergenic |
AATACAAAATGCATTCGTCT+TGG | 0.493649 | 4.1:-75233636 | MS.gene87562:CDS |
GCATTTCTCAACGATTATCC+TGG | 0.496654 | 4.1:-75234216 | MS.gene87562:CDS |
AATTAACCAATGGGGAATCA+AGG | 0.508996 | 4.1:-75235018 | None:intergenic |
GCTACTGATTTGGAATCAAA+AGG | 0.512087 | 4.1:+75234045 | None:intergenic |
TCTCGTTTAGAGATAATACC+TGG | 0.519088 | 4.1:-75233936 | MS.gene87562:CDS |
AATACCTGGAAAGAAATTGA+TGG | 0.519602 | 4.1:-75233922 | MS.gene87562:CDS |
ATTTCTCAGTCTATGGGCTA+AGG | 0.523215 | 4.1:-75233698 | MS.gene87562:CDS |
AATTTAGAGGTTCATGTAGA+GGG | 0.531145 | 4.1:-75234146 | MS.gene87562:CDS |
AATCTATGGTTAAAATCACT+TGG | 0.556276 | 4.1:+75233748 | None:intergenic |
GAATTTAGAGGTTCATGTAG+AGG | 0.558832 | 4.1:-75234147 | MS.gene87562:CDS |
GTCGTTCCTACTCAGAGAAG+AGG | 0.564410 | 4.1:-75233880 | MS.gene87562:CDS |
GTCAAGAGATGATTACTTGG+TGG | 0.564802 | 4.1:-75233995 | MS.gene87562:CDS |
AGAAACCCTCTTCTCTGAGT+AGG | 0.567682 | 4.1:+75233874 | None:intergenic |
TGAGTAGGAACGACAACACA+AGG | 0.570906 | 4.1:+75233889 | None:intergenic |
AAGAGGGTTTCTATTTAATG+GGG | 0.572135 | 4.1:-75233863 | MS.gene87562:CDS |
CCAAGTAATCATCTCTTGAC+TGG | 0.573666 | 4.1:+75233998 | None:intergenic |
AAATCAGTAGCACGTTGTCA+TGG | 0.578850 | 4.1:-75234033 | MS.gene87562:CDS |
TCGTTCCTACTCAGAGAAGA+GGG | 0.586879 | 4.1:-75233879 | MS.gene87562:CDS |
AAATTATGGTTATGTGAACC+AGG | 0.592068 | 4.1:+75234198 | None:intergenic |
TTGGAATCAAAAGGAGACAC+CGG | 0.632075 | 4.1:+75234054 | None:intergenic |
ATTGACTGTTACAAAAGGTG+TGG | 0.733853 | 4.1:+75233470 | None:intergenic |
GAGTAGGAACGACAACACAA+GGG | 0.739871 | 4.1:+75233890 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATAAAATAAAAGTATAGA+TGG | - | chr4.1:75233530-75233549 | MS.gene87562:CDS | 10.0% |
!! | ACAAACTATAAATAAATCTA+TGG | + | chr4.1:75234686-75234705 | None:intergenic | 15.0% |
!! | ATAATGATACAATTGTAATA+TGG | - | chr4.1:75234748-75234767 | MS.gene87562:intron | 15.0% |
!! | ATAGATTTATTTATAGTTTG+TGG | - | chr4.1:75234685-75234704 | MS.gene87562:intron | 15.0% |
!! | TAATGATACAATTGTAATAT+GGG | - | chr4.1:75234749-75234768 | MS.gene87562:intron | 15.0% |
!! | TCAATAAAATATATAAAGTC+AGG | + | chr4.1:75233680-75233699 | None:intergenic | 15.0% |
!!! | AATAATTTGAGTTTCAATAA+TGG | - | chr4.1:75233503-75233522 | MS.gene87562:CDS | 15.0% |
!!! | ATAATTTGAGTTTCAATAAT+GGG | - | chr4.1:75233504-75233523 | MS.gene87562:CDS | 15.0% |
!!! | TAGATTTATTTATAGTTTGT+GGG | - | chr4.1:75234686-75234705 | MS.gene87562:intron | 15.0% |
!!! | TGTTATATTATAGAGATTTT+AGG | + | chr4.1:75233714-75233733 | None:intergenic | 15.0% |
!! | AATAAGAAGGTTGTAAAATT+AGG | - | chr4.1:75233930-75233949 | MS.gene87562:CDS | 20.0% |
!! | ACAAAAAATGGTGATATTAT+TGG | - | chr4.1:75234867-75234886 | MS.gene87562:intron | 20.0% |
!! | ATAAGAAGGTTGTAAAATTA+GGG | - | chr4.1:75233931-75233950 | MS.gene87562:CDS | 20.0% |
!! | ATTGAAAGAGAATGAAAATT+TGG | + | chr4.1:75233464-75233483 | None:intergenic | 20.0% |
!! | CCTATATATTCTACAAAAAA+TGG | - | chr4.1:75234855-75234874 | MS.gene87562:intron | 20.0% |
!! | TGGATTTAAAAAACAAATAC+CGG | - | chr4.1:75234344-75234363 | MS.gene87562:intron | 20.0% |
!! | TTGGTTAAGTATAATGATAA+AGG | - | chr4.1:75234909-75234928 | MS.gene87562:intron | 20.0% |
!!! | ATAACCGGTTTTTTAAATTA+GGG | - | chr4.1:75233899-75233918 | MS.gene87562:CDS | 20.0% |
!!! | CCATTTTTTGTAGAATATAT+AGG | + | chr4.1:75234858-75234877 | None:intergenic | 20.0% |
!!! | TATAACCGGTTTTTTAAATT+AGG | - | chr4.1:75233898-75233917 | MS.gene87562:CDS | 20.0% |
! | AATCTATGGTTAAAATCACT+TGG | + | chr4.1:75234672-75234691 | None:intergenic | 25.0% |
! | CAAACCCTAATTTAAAAAAC+CGG | + | chr4.1:75233906-75233925 | None:intergenic | 25.0% |
! | TATTTAATGGGGTTATTCAT+TGG | - | chr4.1:75234565-75234584 | MS.gene87562:intron | 25.0% |
! | TGGTTTAATGACATTATAAC+CGG | - | chr4.1:75233884-75233903 | MS.gene87562:CDS | 25.0% |
!! | ATTTATAGTTTGTGGGTATT+TGG | - | chr4.1:75234693-75234712 | MS.gene87562:intron | 25.0% |
!! | CATTGATTAGAAAAGATAGA+CGG | - | chr4.1:75233607-75233626 | MS.gene87562:CDS | 25.0% |
!!! | TGTTTTTTAAATCCAGTAGA+TGG | + | chr4.1:75234339-75234358 | None:intergenic | 25.0% |
AAACTTATAAGAGACTTCAC+TGG | + | chr4.1:75234036-75234055 | None:intergenic | 30.0% | |
AAATGTGAATTTGCAAAGTG+AGG | + | chr4.1:75234099-75234118 | None:intergenic | 30.0% | |
AAATTATGGTTATGTGAACC+AGG | + | chr4.1:75234222-75234241 | None:intergenic | 30.0% | |
AACTTCCAAACATCTACATA+TGG | - | chr4.1:75234310-75234329 | MS.gene87562:intron | 30.0% | |
AAGAGGGTTTCTATTTAATG+GGG | - | chr4.1:75234554-75234573 | MS.gene87562:intron | 30.0% | |
AATACAAAATGCATTCGTCT+TGG | - | chr4.1:75234781-75234800 | MS.gene87562:intron | 30.0% | |
AATACCTGGAAAGAAATTGA+TGG | - | chr4.1:75234495-75234514 | MS.gene87562:intron | 30.0% | |
AATGATAAAGGACAGCTATT+AGG | - | chr4.1:75234921-75234940 | MS.gene87562:intron | 30.0% | |
AATGTGAATTTGCAAAGTGA+GGG | + | chr4.1:75234098-75234117 | None:intergenic | 30.0% | |
AATTTAGAGGTTCATGTAGA+GGG | - | chr4.1:75234271-75234290 | MS.gene87562:intron | 30.0% | |
ACGAAATCATGGTAATAGAT+TGG | - | chr4.1:75234890-75234909 | MS.gene87562:intron | 30.0% | |
AGAAGAGGGTTTCTATTTAA+TGG | - | chr4.1:75234552-75234571 | MS.gene87562:intron | 30.0% | |
ATATGTAGATGTTTGGAAGT+TGG | + | chr4.1:75234311-75234330 | None:intergenic | 30.0% | |
ATGATAAAGGACAGCTATTA+GGG | - | chr4.1:75234922-75234941 | MS.gene87562:intron | 30.0% | |
ATTTGGGAAGCGAAAAATTA+TGG | + | chr4.1:75234236-75234255 | None:intergenic | 30.0% | |
CTCCAAATGTGATGAATAAT+GGG | + | chr4.1:75234457-75234476 | None:intergenic | 30.0% | |
GAAGAGGGTTTCTATTTAAT+GGG | - | chr4.1:75234553-75234572 | MS.gene87562:intron | 30.0% | |
GATATTATTGGACGAAATCA+TGG | - | chr4.1:75234879-75234898 | MS.gene87562:intron | 30.0% | |
GATCGAATTTCATGAGATAA+AGG | + | chr4.1:75234168-75234187 | None:intergenic | 30.0% | |
TCAAATGCGTTTGTAAGTTA+TGG | - | chr4.1:75234055-75234074 | MS.gene87562:CDS | 30.0% | |
TCAACCGGAAAATAAGATTT+GGG | + | chr4.1:75234252-75234271 | None:intergenic | 30.0% | |
TTCAACCGGAAAATAAGATT+TGG | + | chr4.1:75234253-75234272 | None:intergenic | 30.0% | |
TTCAGATTGACTGTTACAAA+AGG | + | chr4.1:75234955-75234974 | None:intergenic | 30.0% | |
TTCCCATTATTCATCACATT+TGG | - | chr4.1:75234452-75234471 | MS.gene87562:intron | 30.0% | |
! | CATTGTTGCGTTTGATTTAA+TGG | - | chr4.1:75234620-75234639 | MS.gene87562:intron | 30.0% |
! | CGTCTATCTTTTCTAATCAA+TGG | + | chr4.1:75233609-75233628 | None:intergenic | 30.0% |
! | TATTTTCCGGTTGAATTTAG+AGG | - | chr4.1:75234258-75234277 | MS.gene87562:intron | 30.0% |
! | TGCGTTTGATTTAATGGAAA+AGG | - | chr4.1:75234626-75234645 | MS.gene87562:intron | 30.0% |
!! | TGATCATCCAAATTTTGATG+AGG | - | chr4.1:75234007-75234026 | MS.gene87562:CDS | 30.0% |
AAAAATCTACTAGCGTGTGT+TGG | + | chr4.1:75234135-75234154 | None:intergenic | 35.0% | |
AAGGAAAGGATACTGATGAT+TGG | - | chr4.1:75233423-75233442 | MS.gene87562:CDS | 35.0% | |
AATTAGGGTTTGATCAAAGC+AGG | - | chr4.1:75233946-75233965 | MS.gene87562:CDS | 35.0% | |
AGGATACTGATGATTGGATT+TGG | - | chr4.1:75233429-75233448 | MS.gene87562:CDS | 35.0% | |
AGTACCATCAATTTCTTTCC+AGG | + | chr4.1:75234502-75234521 | None:intergenic | 35.0% | |
ATACTGATGATTGGATTTGG+AGG | - | chr4.1:75233432-75233451 | MS.gene87562:CDS | 35.0% | |
ATTGACTGTTACAAAAGGTG+TGG | + | chr4.1:75234950-75234969 | None:intergenic | 35.0% | |
CATGAACCTCTAAATTCAAC+CGG | + | chr4.1:75234267-75234286 | None:intergenic | 35.0% | |
CCATTATTCATCACATTTGG+AGG | - | chr4.1:75234455-75234474 | MS.gene87562:intron | 35.0% | |
CCTCCAAATGTGATGAATAA+TGG | + | chr4.1:75234458-75234477 | None:intergenic | 35.0% | |
GAATTTAGAGGTTCATGTAG+AGG | - | chr4.1:75234270-75234289 | MS.gene87562:intron | 35.0% | |
GGATTCCATATGTAGATGTT+TGG | + | chr4.1:75234318-75234337 | None:intergenic | 35.0% | |
TACATATGGAATCCATCTAC+TGG | - | chr4.1:75234324-75234343 | MS.gene87562:intron | 35.0% | |
TCTCGTTTAGAGATAATACC+TGG | - | chr4.1:75234481-75234500 | MS.gene87562:intron | 35.0% | |
TGGAGAATTTCTCAGTCTAT+GGG | - | chr4.1:75234713-75234732 | MS.gene87562:intron | 35.0% | |
TGGTTAAAATCACTTGGAAC+AGG | + | chr4.1:75234666-75234685 | None:intergenic | 35.0% | |
TTATCGCAGTGTATTGGATT+TGG | - | chr4.1:75234593-75234612 | MS.gene87562:intron | 35.0% | |
TTGGAGAATTTCTCAGTCTA+TGG | - | chr4.1:75234712-75234731 | MS.gene87562:intron | 35.0% | |
! | ATAGGTTGAAAGTAGTGATC+AGG | + | chr4.1:75234840-75234859 | None:intergenic | 35.0% |
!! | GCTACTGATTTGGAATCAAA+AGG | + | chr4.1:75234375-75234394 | None:intergenic | 35.0% |
!!! | GCTTCCCAAATCTTATTTTC+CGG | - | chr4.1:75234245-75234264 | MS.gene87562:intron | 35.0% |
!!! | TTCGATGAGTTTTTCTGGTT+CGG | - | chr4.1:75233854-75233873 | MS.gene87562:CDS | 35.0% |
!!! | TTTTCTGGTTCGGATTTTTC+TGG | - | chr4.1:75233864-75233883 | MS.gene87562:CDS | 35.0% |
AAATCAGTAGCACGTTGTCA+TGG | - | chr4.1:75234384-75234403 | MS.gene87562:intron | 40.0% | |
AGAGGGTGAAAACGTTCAAA+AGG | + | chr4.1:75233799-75233818 | None:intergenic | 40.0% | |
AGCAGGATTAAGAACAGAGA+GGG | + | chr4.1:75233816-75233835 | None:intergenic | 40.0% | |
ATTTGGATGATCAGTTCCTG+AGG | + | chr4.1:75234000-75234019 | None:intergenic | 40.0% | |
CAGCTGAAAATAACTTGAGC+AGG | + | chr4.1:75233833-75233852 | None:intergenic | 40.0% | |
CCAAGTAATCATCTCTTGAC+TGG | + | chr4.1:75234422-75234441 | None:intergenic | 40.0% | |
CCAGTCAAGAGATGATTACT+TGG | - | chr4.1:75234419-75234438 | MS.gene87562:intron | 40.0% | |
CTGGCAACCTCATCAAAATT+TGG | + | chr4.1:75234017-75234036 | None:intergenic | 40.0% | |
GAGGGTGAAAACGTTCAAAA+GGG | + | chr4.1:75233798-75233817 | None:intergenic | 40.0% | |
GCATTTCTCAACGATTATCC+TGG | - | chr4.1:75234201-75234220 | MS.gene87562:CDS | 40.0% | |
GTCAAGAGATGATTACTTGG+TGG | - | chr4.1:75234422-75234441 | MS.gene87562:intron | 40.0% | |
TAATGGGGTTATTCATTGGC+TGG | - | chr4.1:75234569-75234588 | MS.gene87562:intron | 40.0% | |
TTGGAATCAAAAGGAGACAC+CGG | + | chr4.1:75234366-75234385 | None:intergenic | 40.0% | |
! | ATGACAACGTGCTACTGATT+TGG | + | chr4.1:75234385-75234404 | None:intergenic | 40.0% |
! | ATTTCTCAGTCTATGGGCTA+AGG | - | chr4.1:75234719-75234738 | MS.gene87562:intron | 40.0% |
! | TAGGGTTTGCTCGAATAAGA+AGG | - | chr4.1:75233917-75233936 | MS.gene87562:CDS | 40.0% |
!! | CTGCTCAAGTTATTTTCAGC+TGG | - | chr4.1:75233831-75233850 | MS.gene87562:CDS | 40.0% |
AAAGATAGACGGCTGCGATT+TGG | - | chr4.1:75233618-75233637 | MS.gene87562:CDS | 45.0% | |
AGAAACCCTCTTCTCTGAGT+AGG | + | chr4.1:75234546-75234565 | None:intergenic | 45.0% | |
GAGCAGGATTAAGAACAGAG+AGG | + | chr4.1:75233817-75233836 | None:intergenic | 45.0% | |
GAGTAGGAACGACAACACAA+GGG | + | chr4.1:75234530-75234549 | None:intergenic | 45.0% | |
GAGTCTCTGCTTTCACTACT+TGG | - | chr4.1:75234990-75235009 | MS.gene87562:intron | 45.0% | |
TCGTTCCTACTCAGAGAAGA+GGG | - | chr4.1:75234538-75234557 | MS.gene87562:intron | 45.0% | |
TGAGTAGGAACGACAACACA+AGG | + | chr4.1:75234531-75234550 | None:intergenic | 45.0% | |
TGGGGAATCAAGGTAAGGAA+AGG | - | chr4.1:75233409-75233428 | MS.gene87562:CDS | 45.0% | |
! | GTAGCACGTTGTCATGGTTT+TGG | - | chr4.1:75234390-75234409 | MS.gene87562:intron | 45.0% |
!!! | GCTGGTTCGATGAGTTTTTC+TGG | - | chr4.1:75233849-75233868 | MS.gene87562:CDS | 45.0% |
GGGTTTGATCAAAGCAGGCA+TGG | - | chr4.1:75233951-75233970 | MS.gene87562:CDS | 50.0% | |
GTCGTTCCTACTCAGAGAAG+AGG | - | chr4.1:75234537-75234556 | MS.gene87562:intron | 50.0% | |
TCAACGAATCCGTTGACACC+TGG | - | chr4.1:75233643-75233662 | MS.gene87562:CDS | 50.0% | |
! | GCTGGCTTATCGCAGTGTAT+TGG | - | chr4.1:75234587-75234606 | MS.gene87562:intron | 50.0% |
! | TACTTGCTGCACAGCGTTGT+CGG | + | chr4.1:75233768-75233787 | None:intergenic | 50.0% |
AGTCAGGATCCGTTGACACC+AGG | + | chr4.1:75233664-75233683 | None:intergenic | 55.0% | |
CCGTTGACACCAGGTGTCAA+CGG | + | chr4.1:75233655-75233674 | None:intergenic | 55.0% | |
CGCACTGTTGTATCTGCCTC+AGG | - | chr4.1:75233981-75234000 | MS.gene87562:CDS | 55.0% | |
! | ACTTGCTGCACAGCGTTGTC+GGG | + | chr4.1:75233767-75233786 | None:intergenic | 55.0% |
! | CCGTTGACACCTGGTGTCAA+CGG | - | chr4.1:75233652-75233671 | MS.gene87562:CDS | 55.0% |
! | CGTGTGTTGGCGAGGTAAGT+TGG | + | chr4.1:75234122-75234141 | None:intergenic | 55.0% |
! | TCTACTAGCGTGTGTTGGCG+AGG | + | chr4.1:75234130-75234149 | None:intergenic | 55.0% |
CTTGCTGCACAGCGTTGTCG+GGG | + | chr4.1:75233766-75233785 | None:intergenic | 60.0% | |
TTGCTGCACAGCGTTGTCGG+GGG | + | chr4.1:75233765-75233784 | None:intergenic | 60.0% | |
CAGCGTTGTCGGGGGATGCA+AGG | + | chr4.1:75233757-75233776 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 75233408 | 75235031 | 75233408 | ID=MS.gene87562 |
chr4.1 | mRNA | 75233408 | 75235031 | 75233408 | ID=MS.gene87562.t1;Parent=MS.gene87562 |
chr4.1 | exon | 75235019 | 75235031 | 75235019 | ID=MS.gene87562.t1.exon1;Parent=MS.gene87562.t1 |
chr4.1 | CDS | 75235019 | 75235031 | 75235019 | ID=cds.MS.gene87562.t1;Parent=MS.gene87562.t1 |
chr4.1 | exon | 75233408 | 75234246 | 75233408 | ID=MS.gene87562.t1.exon2;Parent=MS.gene87562.t1 |
chr4.1 | CDS | 75233408 | 75234246 | 75233408 | ID=cds.MS.gene87562.t1;Parent=MS.gene87562.t1 |
Gene Sequence |
Protein sequence |