AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87586


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87586.t1 MTR_4g023080 71.987 307 70 7 1 306 62 353 7.71e-148 419
MS.gene87586.t1 MTR_4g023380 68.769 333 56 6 1 307 69 379 1.08e-147 420
MS.gene87586.t1 MTR_4g023090 68.615 325 77 6 1 307 69 386 7.03e-147 418
MS.gene87586.t1 MTR_4g023440 67.752 307 53 4 1 307 72 332 5.84e-137 391
MS.gene87586.t1 MTR_4g021785 68.730 307 83 5 1 307 62 355 6.07e-137 392
MS.gene87586.t1 MTR_4g023130 66.667 285 80 6 23 306 42 312 2.38e-122 353
MS.gene87586.t1 MTR_4g023070 58.750 320 112 6 1 306 56 369 1.52e-119 348
MS.gene87586.t1 MTR_4g023120 57.944 321 115 6 1 307 56 370 5.77e-117 342
MS.gene87586.t1 MTR_4g023190 59.740 308 108 7 1 305 63 357 1.65e-115 337
MS.gene87586.t1 MTR_4g023200 59.740 308 109 7 1 305 63 358 9.91e-112 328
MS.gene87586.t1 MTR_4g023150 59.091 308 111 7 1 305 63 358 1.71e-111 327
MS.gene87586.t1 MTR_3g103020 58.065 310 117 8 5 307 75 378 1.45e-109 323
MS.gene87586.t1 MTR_4g109270 55.591 313 119 9 3 307 64 364 7.84e-104 308
MS.gene87586.t1 MTR_4g122850 56.918 318 119 11 1 307 54 364 1.06e-103 308
MS.gene87586.t1 MTR_4g117720 54.574 317 124 9 3 307 70 378 1.15e-99 298
MS.gene87586.t1 MTR_3g034160 55.031 318 122 8 3 306 64 374 3.60e-99 296
MS.gene87586.t1 MTR_3g034180 53.125 320 127 9 3 307 178 489 5.97e-97 295
MS.gene87586.t1 MTR_4g109280 52.751 309 133 6 3 307 60 359 5.53e-95 285
MS.gene87586.t1 MTR_4g094365 52.564 312 131 9 3 307 63 364 4.99e-94 283
MS.gene87586.t1 MTR_4g117770 54.902 306 120 8 11 307 71 367 1.16e-92 280
MS.gene87586.t1 MTR_4g117810 54.902 306 120 8 11 307 71 367 1.16e-92 280
MS.gene87586.t1 MTR_6g060650 52.564 312 127 8 9 306 68 372 2.98e-92 279
MS.gene87586.t1 MTR_4g116330 56.343 268 105 6 44 307 121 380 3.28e-92 279
MS.gene87586.t1 MTR_8g433040 53.420 307 112 9 11 307 79 364 1.03e-90 275
MS.gene87586.t1 MTR_8g032380 53.420 307 112 9 11 307 79 364 1.03e-90 275
MS.gene87586.t1 MTR_4g117780 53.922 306 123 8 11 307 71 367 1.74e-89 271
MS.gene87586.t1 MTR_3g034130 52.013 298 125 7 3 288 64 355 8.43e-89 270
MS.gene87586.t1 MTR_4g117870 49.351 308 112 7 3 307 1 267 1.17e-88 266
MS.gene87586.t1 MTR_4g117850 53.420 307 117 12 9 304 85 376 4.65e-87 265
MS.gene87586.t1 MTR_5g070130 48.089 314 149 7 5 307 67 377 5.28e-85 261
MS.gene87586.t1 MTR_4g118380 50.000 302 123 7 3 282 62 357 3.12e-83 255
MS.gene87586.t1 MTR_8g032390 49.667 300 117 9 9 302 99 370 5.53e-82 252
MS.gene87586.t1 MTR_5g097210 49.355 310 139 10 1 304 63 360 2.18e-80 248
MS.gene87586.t1 MTR_4g116320 60.274 219 76 6 91 304 43 255 4.95e-77 236
MS.gene87586.t1 MTR_5g070080 46.273 322 145 9 9 307 70 386 3.85e-76 238
MS.gene87586.t1 MTR_5g070088 43.478 322 157 6 9 307 67 386 7.56e-75 234
MS.gene87586.t1 MTR_1g055195 46.000 300 134 9 18 307 197 478 5.62e-71 228
MS.gene87586.t1 MTR_1g055135 44.025 318 144 10 9 307 73 375 5.74e-70 222
MS.gene87586.t1 MTR_8g433030 55.708 219 88 7 87 302 125 337 7.86e-69 218
MS.gene87586.t1 MTR_6g463430 58.333 204 74 5 107 307 7 202 1.54e-68 212
MS.gene87586.t1 MTR_4g118400 45.645 287 113 8 25 301 41 294 7.09e-68 214
MS.gene87586.t1 MTR_4g116330 47.761 268 89 6 44 307 121 341 7.28e-68 215
MS.gene87586.t1 MTR_4g117750 46.452 310 139 10 9 306 64 358 8.28e-68 219
MS.gene87586.t1 MTR_4g117750 58.036 112 41 3 197 305 373 481 6.14e-28 113
MS.gene87586.t1 MTR_4g121580 46.488 299 118 12 8 297 74 339 1.61e-66 213
MS.gene87586.t1 MTR_8g040935 53.774 212 88 5 102 307 1 208 6.12e-64 201
MS.gene87586.t1 MTR_7g079370 41.346 312 155 9 9 301 48 350 1.72e-62 202
MS.gene87586.t1 MTR_7g079400 44.000 325 146 14 6 307 26 337 3.03e-60 195
MS.gene87586.t1 MTR_1g055165 39.159 309 126 9 5 307 66 318 4.11e-57 187
MS.gene87586.t1 MTR_4g117530 44.578 249 91 6 64 307 47 253 1.21e-54 178
MS.gene87586.t1 MTR_8g013010 51.923 208 89 6 3 206 109 309 1.59e-54 180
MS.gene87586.t1 MTR_4g118370 44.444 252 107 10 59 304 33 257 2.81e-54 177
MS.gene87586.t1 MTR_8g102520 39.048 315 148 12 3 307 42 322 3.29e-51 172
MS.gene87586.t1 MTR_4g114700 39.245 265 101 4 43 298 5 218 1.63e-47 159
MS.gene87586.t1 MTR_4g117430 56.667 150 53 4 58 206 14 152 1.66e-46 154
MS.gene87586.t1 MTR_1g055175 45.226 199 96 7 115 306 8 200 5.88e-44 149
MS.gene87586.t1 MTR_2g048580 35.690 297 151 13 20 307 77 342 3.22e-41 146
MS.gene87586.t1 MTR_1g055250 39.810 211 115 7 88 294 51 253 5.21e-40 142
MS.gene87586.t1 MTR_7g117720 55.474 137 54 4 9 139 52 187 2.22e-39 139
MS.gene87586.t1 MTR_7g117720 59.302 86 29 2 222 301 186 271 3.28e-19 85.9
MS.gene87586.t1 MTR_7g079420 36.201 279 122 9 46 307 905 1144 9.24e-39 145
MS.gene87586.t1 MTR_4g116340 48.235 170 79 4 9 171 80 247 4.90e-37 132
MS.gene87586.t1 MTR_5g023000 65.347 101 31 2 209 307 1 99 3.55e-35 123
MS.gene87586.t1 MTR_4g118360 58.120 117 39 3 194 306 15 125 2.09e-34 122
MS.gene87586.t1 MTR_4g122860 38.785 214 93 9 101 307 138 320 2.13e-32 122
MS.gene87586.t1 MTR_8g098830 38.571 210 113 9 98 301 16 215 1.42e-30 115
MS.gene87586.t1 MTR_4g023430 71.605 81 18 1 232 307 142 222 2.38e-30 114
MS.gene87586.t1 MTR_7g079450 42.361 144 71 5 167 307 3 137 3.13e-24 95.9
MS.gene87586.t1 MTR_4g023100 80.702 57 11 0 251 307 63 119 1.14e-23 94.0
MS.gene87586.t1 MTR_6g034720 44.167 120 61 3 68 182 51 169 8.40e-21 89.0
MS.gene87586.t1 MTR_7g070880 27.273 286 152 10 42 276 114 394 2.95e-20 90.9
MS.gene87586.t1 MTR_4g133170 28.235 255 147 12 40 272 86 326 8.68e-20 89.0
MS.gene87586.t1 MTR_2g021800 27.778 288 170 10 45 300 131 412 1.25e-19 89.0
MS.gene87586.t1 MTR_7g056503 26.370 292 172 10 41 299 116 397 2.64e-19 87.8
MS.gene87586.t1 MTR_2g022000 26.502 283 172 8 45 296 130 407 3.08e-18 85.1
MS.gene87586.t1 MTR_7g070830 26.198 313 172 11 42 300 114 421 3.09e-18 84.7
MS.gene87586.t1 MTR_1g097560 25.649 308 195 12 1 299 91 373 3.96e-18 84.3
MS.gene87586.t1 MTR_4g117550 28.269 283 143 12 48 305 127 374 2.52e-17 82.0
MS.gene87586.t1 MTR_1g097490 27.036 307 196 11 1 299 104 390 5.41e-17 80.9
MS.gene87586.t1 MTR_1g055200 51.220 82 35 3 43 122 5 83 7.69e-17 75.1
MS.gene87586.t1 MTR_7g062060 26.132 287 175 11 41 300 124 400 8.49e-17 80.5
MS.gene87586.t1 MTR_2g046920 24.638 276 183 7 12 277 92 352 4.35e-16 78.2
MS.gene87586.t1 MTR_1g097330 27.698 278 173 14 8 272 74 336 5.88e-16 78.2
MS.gene87586.t1 MTR_8g013005 62.500 56 19 1 253 306 3 58 7.16e-16 71.2
MS.gene87586.t1 MTR_4g122840 39.855 138 44 4 172 307 164 264 8.17e-16 76.3
MS.gene87586.t1 MTR_2g021150 24.272 309 212 12 1 299 72 368 8.63e-16 77.4
MS.gene87586.t1 MTR_8g101580 26.295 251 166 9 57 299 155 394 1.62e-15 76.6
MS.gene87586.t1 MTR_2g021770 28.159 277 155 12 61 304 142 407 2.10e-15 76.6
MS.gene87586.t1 MTR_4g070550 27.650 217 125 7 44 234 101 311 5.41e-15 75.1
MS.gene87586.t1 MTR_5g022420 25.806 279 171 15 6 272 87 341 6.07e-15 75.1
MS.gene87586.t1 MTR_5g097680 26.715 277 165 10 60 305 159 428 6.29e-15 75.1
MS.gene87586.t1 MTR_5g069120 42.000 100 49 2 9 100 52 150 6.46e-15 72.0
MS.gene87586.t1 MTR_2g426020 23.810 294 185 10 30 300 87 364 1.71e-14 73.9
MS.gene87586.t1 MTR_2g055970 24.818 274 180 11 38 299 301 560 2.32e-14 73.9
MS.gene87586.t1 MTR_7g079640 26.059 307 183 13 3 295 89 365 2.46e-14 73.2
MS.gene87586.t1 MTR_4g130330 25.952 289 179 10 44 302 106 389 2.71e-14 73.2
MS.gene87586.t1 MTR_5g037680 27.500 280 171 11 36 299 118 381 3.89e-14 72.8
MS.gene87586.t1 MTR_7g078860 26.316 247 141 7 42 260 120 353 4.38e-14 72.4
MS.gene87586.t1 MTR_3g083010 27.526 287 168 13 44 302 108 382 6.28e-14 72.0
MS.gene87586.t1 MTR_2g038680 25.436 287 159 13 56 302 138 409 6.33e-14 72.0
MS.gene87586.t1 MTR_6g086825 25.658 304 183 11 36 305 167 461 7.05e-14 72.0
MS.gene87586.t1 MTR_0667s0010 27.801 241 130 12 28 234 72 302 1.03e-13 71.6
MS.gene87586.t1 MTR_7g062100 27.099 262 148 9 42 272 119 368 1.20e-13 71.2
MS.gene87586.t1 MTR_7g055930 24.038 312 151 14 40 283 116 409 2.42e-13 70.5
MS.gene87586.t1 MTR_2g047832 24.252 301 193 8 2 277 87 377 2.68e-13 70.1
MS.gene87586.t1 MTR_3g036290 29.557 203 113 9 42 239 117 294 3.98e-13 69.3
MS.gene87586.t1 MTR_2g024110 27.273 286 175 14 44 304 93 370 4.50e-13 69.3
MS.gene87586.t1 MTR_2g025420 25.321 312 177 12 24 297 84 377 4.56e-13 69.7
MS.gene87586.t1 MTR_7g407070 27.698 278 165 15 44 299 135 398 4.56e-13 69.3
MS.gene87586.t1 MTR_1g055145 50.649 77 33 2 149 225 131 202 5.50e-13 68.6
MS.gene87586.t1 MTR_0129s0070 25.862 290 171 12 48 307 124 399 5.63e-13 69.3
MS.gene87586.t1 MTR_2g021950 25.869 259 167 9 60 300 142 393 5.71e-13 69.3
MS.gene87586.t1 MTR_0054s0090 25.085 295 174 12 44 302 121 404 6.13e-13 69.3
MS.gene87586.t1 MTR_4g028660 26.481 287 171 10 44 300 119 395 7.57e-13 68.9
MS.gene87586.t1 MTR_4g027450 26.481 287 171 10 44 300 119 395 7.57e-13 68.9
MS.gene87586.t1 MTR_5g057790 29.259 270 159 14 44 299 142 393 8.20e-13 68.6
MS.gene87586.t1 MTR_4g107820 27.755 245 148 11 40 272 128 355 8.84e-13 68.6
MS.gene87586.t1 MTR_4g107780 27.755 245 148 11 40 272 128 355 8.84e-13 68.6
MS.gene87586.t1 MTR_2g064960 73.171 41 9 1 268 306 18 58 9.08e-13 62.8
MS.gene87586.t1 MTR_4g107780 27.755 245 148 11 40 272 128 355 9.53e-13 68.6
MS.gene87586.t1 MTR_4g107820 27.755 245 148 11 40 272 128 355 1.03e-12 68.6
MS.gene87586.t1 MTR_6g016285 23.718 312 177 12 41 299 114 417 1.17e-12 68.6
MS.gene87586.t1 MTR_0128s0070 26.180 233 133 9 88 298 180 395 1.24e-12 68.2
MS.gene87586.t1 MTR_5g069390 27.931 290 163 14 44 304 145 417 1.28e-12 68.6
MS.gene87586.t1 MTR_1g068875 26.087 276 163 12 8 260 57 314 1.40e-12 67.8
MS.gene87586.t1 MTR_7g055870 24.430 307 162 14 37 283 113 409 1.48e-12 68.2
MS.gene87586.t1 MTR_5g097330 27.660 282 172 12 40 300 129 399 1.62e-12 67.8
MS.gene87586.t1 MTR_5g022850 27.211 294 169 13 44 305 74 354 1.72e-12 67.4
MS.gene87586.t1 MTR_8g063440 30.075 266 131 15 40 270 111 356 1.99e-12 67.4
MS.gene87586.t1 MTR_7g077910 28.000 225 117 10 42 239 42 248 2.08e-12 67.0
MS.gene87586.t1 MTR_2g426090 25.941 239 145 9 44 257 100 331 2.18e-12 67.4
MS.gene87586.t1 MTR_4g061340 29.412 238 117 13 40 252 115 326 2.36e-12 67.4
MS.gene87586.t1 MTR_5g057710 28.736 261 151 13 44 294 142 377 2.52e-12 67.4
MS.gene87586.t1 MTR_4g055820 26.446 242 139 6 48 259 124 356 2.69e-12 67.0
MS.gene87586.t1 MTR_4g109290 62.264 53 18 1 257 307 136 188 2.70e-12 64.7
MS.gene87586.t1 MTR_5g096710 26.408 284 158 12 28 272 98 369 2.73e-12 67.0
MS.gene87586.t1 MTR_8g066440 24.413 213 142 5 86 282 175 384 2.97e-12 67.0
MS.gene87586.t1 MTR_7g066100 23.411 299 186 10 40 301 103 395 3.06e-12 67.0
MS.gene87586.t1 MTR_3g013740 26.545 275 166 13 44 299 149 406 3.31e-12 67.0
MS.gene87586.t1 MTR_2g021155 26.639 244 148 11 44 272 130 357 3.65e-12 67.4
MS.gene87586.t1 MTR_2g031640 25.685 292 181 11 40 306 88 368 3.88e-12 66.6
MS.gene87586.t1 MTR_8g467140 27.193 228 141 10 15 234 103 313 4.54e-12 66.2
MS.gene87586.t1 MTR_4g037465 25.177 282 166 11 36 286 112 379 4.69e-12 66.6
MS.gene87586.t1 MTR_7g055977 24.345 267 156 9 39 272 99 352 4.80e-12 66.2
MS.gene87586.t1 MTR_6g004450 27.155 232 141 9 86 302 49 267 4.88e-12 65.5
MS.gene87586.t1 MTR_5g011200 29.665 209 126 10 35 236 109 303 5.28e-12 66.2
MS.gene87586.t1 MTR_1g068860 25.926 243 152 11 14 239 63 294 6.00e-12 65.9
MS.gene87586.t1 MTR_2g026010 27.149 221 130 9 40 238 86 297 6.11e-12 66.2
MS.gene87586.t1 MTR_7g445890 24.907 269 162 10 42 272 87 353 6.73e-12 65.9
MS.gene87586.t1 MTR_2g425980 26.019 319 188 12 18 304 81 383 6.81e-12 65.9
MS.gene87586.t1 MTR_7g078040 28.319 226 120 8 44 239 125 338 9.10e-12 65.9
MS.gene87586.t1 MTR_0054s0100 25.253 297 173 12 44 302 121 406 9.26e-12 65.5
MS.gene87586.t1 MTR_5g064700 23.322 283 167 11 60 304 98 368 9.78e-12 65.5
MS.gene87586.t1 MTR_2g031720 24.739 287 194 11 39 307 91 373 9.90e-12 65.5
MS.gene87586.t1 MTR_6g017295 26.316 285 164 14 3 257 1 269 1.00e-11 65.9
MS.gene87586.t1 MTR_3g010390 25.108 231 157 6 44 262 136 362 1.01e-11 65.5
MS.gene87586.t1 MTR_4g028680 25.952 289 174 10 44 302 120 398 1.05e-11 65.5
MS.gene87586.t1 MTR_0707s0020 24.026 308 172 13 41 301 153 445 1.07e-11 65.5
MS.gene87586.t1 MTR_3g010870 26.882 279 158 15 42 299 131 384 1.10e-11 65.5
MS.gene87586.t1 MTR_8g039500 25.670 261 155 12 31 269 97 340 1.15e-11 65.1
MS.gene87586.t1 MTR_1g088120 25.940 266 145 10 44 267 109 364 1.29e-11 65.1
MS.gene87586.t1 MTR_5g057690 27.600 250 150 12 5 248 104 328 1.30e-11 65.1
MS.gene87586.t1 MTR_5g092850 27.174 276 144 15 40 272 105 366 1.43e-11 65.1
MS.gene87586.t1 MTR_4g031770 25.991 227 143 8 39 255 95 306 1.57e-11 64.7
MS.gene87586.t1 MTR_2g426070 26.897 290 177 12 44 306 105 386 1.62e-11 64.7
MS.gene87586.t1 MTR_5g072060 27.160 243 144 11 44 269 110 336 2.27e-11 64.7
MS.gene87586.t1 MTR_6g017305 26.357 258 153 11 48 275 5 255 2.31e-11 63.5
MS.gene87586.t1 MTR_2g024100 25.676 222 131 8 40 234 92 306 2.40e-11 64.3
MS.gene87586.t1 MTR_2g066200 25.292 257 171 8 60 302 137 386 2.85e-11 63.9
MS.gene87586.t1 MTR_0097s0030 24.809 262 151 11 41 274 107 350 2.87e-11 63.9
MS.gene87586.t1 MTR_2g047240 24.809 262 151 11 41 274 107 350 2.87e-11 63.9
MS.gene87586.t1 MTR_7g078960 27.919 197 119 8 60 245 22 206 3.04e-11 63.2
MS.gene87586.t1 MTR_3g464470 25.896 251 141 12 42 260 99 336 3.08e-11 63.9
MS.gene87586.t1 MTR_7g056760 24.830 294 176 13 41 299 121 404 3.41e-11 63.9
MS.gene87586.t1 MTR_2g461450 24.000 250 156 9 31 260 95 330 3.77e-11 63.5
MS.gene87586.t1 MTR_7g066030 24.415 299 177 12 42 300 114 403 4.31e-11 63.5
MS.gene87586.t1 MTR_7g017040 26.246 301 171 16 41 305 114 399 4.34e-11 63.5
MS.gene87586.t1 MTR_3g036335 26.482 253 153 13 60 299 162 394 4.79e-11 63.5
MS.gene87586.t1 MTR_8g046310 26.531 196 127 7 44 234 125 308 5.15e-11 63.2
MS.gene87586.t1 MTR_2g021920 25.103 243 144 9 86 300 37 269 5.86e-11 62.4
MS.gene87586.t1 MTR_4g030980 24.662 296 169 12 28 279 123 408 6.21e-11 63.2
MS.gene87586.t1 MTR_3g014570 25.926 270 172 8 44 299 123 378 6.80e-11 62.8
MS.gene87586.t1 MTR_0128s0010 25.517 290 179 11 40 299 115 397 7.18e-11 62.8
MS.gene87586.t1 MTR_4g028750 30.942 223 117 12 44 238 120 333 7.33e-11 62.8
MS.gene87586.t1 MTR_3g014540 25.362 276 165 10 44 299 123 377 7.52e-11 62.8
MS.gene87586.t1 MTR_8g064890 24.812 266 168 11 58 305 138 389 7.88e-11 62.8
MS.gene87586.t1 MTR_5g056020 24.451 319 171 15 42 299 111 420 8.09e-11 62.8
MS.gene87586.t1 MTR_3g013770 25.725 276 167 11 42 299 132 387 8.39e-11 62.8
MS.gene87586.t1 MTR_7g077070 26.616 263 142 13 42 262 122 375 9.24e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87586.t1 AT3G06240 29.218 243 145 10 40 272 163 388 6.50e-18 84.0
MS.gene87586.t1 AT3G23880 25.714 245 159 11 33 272 105 331 1.81e-13 70.5
MS.gene87586.t1 AT1G32600 27.746 173 96 8 19 184 22 172 2.52e-11 63.5

Find 67 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTTGCCTTTGATTTAA+TGG 0.113056 4.1:-74899484 MS.gene87586:CDS
ACCATGTTCTACTACTAATT+TGG 0.157426 4.1:+74899752 None:intergenic
CATTCTGGTTTGTGGGTATT+TGG 0.166612 4.1:-74899405 MS.gene87586:CDS
ATTAGTTACGATTTGATTAT+AGG 0.211597 4.1:+74899677 None:intergenic
AGAAAAGGGTTGCTATTTAA+TGG 0.222065 4.1:-74899552 MS.gene87586:CDS
ATAATTATACAGTTGAAATA+TGG 0.229851 4.1:-74899344 MS.gene87586:CDS
ACTCTTGACCTTTCTGTTGA+TGG 0.274042 4.1:-74899282 MS.gene87586:CDS
TTGGAGAATTTCTCAGTCTA+TGG 0.276927 4.1:-74899386 MS.gene87586:CDS
TTGGCTTTGCATTGTGATTT+AGG 0.292167 4.1:-74899516 MS.gene87586:CDS
GTAGAACATGGTCATGGTTT+TGG 0.306417 4.1:-74899741 MS.gene87586:CDS
ATGATAAAGGACAACTATTA+AGG 0.310438 4.1:-74899170 MS.gene87586:CDS
GAAAAGGGTTGCTATTTAAT+GGG 0.312116 4.1:-74899551 MS.gene87586:CDS
TAATGCTGTTTCACCACATT+TGG 0.316278 4.1:-74899658 MS.gene87586:CDS
TTAGTTACGATTTGATTATA+GGG 0.330820 4.1:+74899678 None:intergenic
TATTTAATGGGGTTATTCAT+TGG 0.346478 4.1:-74899539 MS.gene87586:CDS
ATTTCTCAGTCTATGGGATA+TGG 0.353010 4.1:-74899379 MS.gene87586:CDS
TACAGAGCATTAGTACATTC+TGG 0.361339 4.1:-74899420 MS.gene87586:CDS
TGAAACTAGATCTATAGATT+TGG 0.373628 4.1:-74899961 MS.gene87586:CDS
TCTTCTTGCAGTTGCAGAAA+AGG 0.375018 4.1:-74899567 MS.gene87586:CDS
AAGAAATCTTAGTTCTAGAT+TGG 0.386816 4.1:-74899202 MS.gene87586:CDS
CATGAACCTCTAATTTCAAC+TGG 0.398042 4.1:+74899870 None:intergenic
GGATTCCATATGTAGATGTT+TGG 0.409871 4.1:+74899819 None:intergenic
CTTCTTGCAGTTGCAGAAAA+GGG 0.422499 4.1:-74899566 MS.gene87586:CDS
CAAGAAGAGATGGCAACATA+AGG 0.426838 4.1:+74899582 None:intergenic
ATTAGTACATTCTGGTTTGT+GGG 0.428082 4.1:-74899412 MS.gene87586:CDS
CATTAGTACATTCTGGTTTG+TGG 0.428815 4.1:-74899413 MS.gene87586:CDS
TAGTCAAAATCACTTGGAAT+AGG 0.431393 4.1:+74899441 None:intergenic
TAATGGGGTTATTCATTGGT+TGG 0.432729 4.1:-74899535 MS.gene87586:CDS
ATAGGTTGAAAGTAGTAATC+AGG 0.434446 4.1:+74899255 None:intergenic
ATCTGAAGTTGTCATGTATA+CGG 0.441550 4.1:-74899124 MS.gene87586:CDS
TAATTATACAGTTGAAATAT+GGG 0.447592 4.1:-74899343 MS.gene87586:CDS
AACGACCAAACATCTACATA+TGG 0.462629 4.1:-74899824 MS.gene87586:CDS
TTCAACTGGAAAATAAGATC+GGG 0.464112 4.1:+74899884 None:intergenic
ACTACTAATTTGGAACGAAA+AGG 0.465993 4.1:+74899762 None:intergenic
TTAAACTTGCTCATTGTCAC+CGG 0.470224 4.1:+74899083 None:intergenic
AAAGTAATGTTGAGTGAAGC+AGG 0.474703 4.1:+74899915 None:intergenic
CTTCCTTTCCATTAAATCAA+AGG 0.474732 4.1:+74899476 None:intergenic
CCAGTCAAGAGATGATTACT+TGG 0.479956 4.1:-74899712 MS.gene87586:CDS
TGGAGAATTTCTCAGTCTAT+GGG 0.488704 4.1:-74899385 MS.gene87586:CDS
TTTCAACTGGAAAATAAGAT+CGG 0.489177 4.1:+74899883 None:intergenic
TTGGTGAAGTATAATGATAA+AGG 0.492510 4.1:-74899183 MS.gene87586:CDS
CTTTGCATTGTGATTTAGGT+CGG 0.499151 4.1:-74899512 MS.gene87586:CDS
AATACAAAGTGCATTCGTCT+TGG 0.503299 4.1:-74899311 MS.gene87586:CDS
GAAATTAGAGGTTCATGTAG+AGG 0.505698 4.1:-74899864 MS.gene87586:CDS
TCTGCAACTGCAAGAAGAGA+TGG 0.527547 4.1:+74899572 None:intergenic
AAATTAGAGGTTCATGTAGA+GGG 0.527818 4.1:-74899863 MS.gene87586:CDS
GTCAAGAGATGATTACTTGG+TGG 0.535085 4.1:-74899709 MS.gene87586:CDS
AAGAAGAGATGGCAACATAA+GGG 0.541759 4.1:+74899583 None:intergenic
TTCAGATGGACTATTAAAGA+AGG 0.541863 4.1:+74899140 None:intergenic
TCTCGTTTAGAGATAATACA+TGG 0.549279 4.1:-74899629 MS.gene87586:CDS
TAATACATGGAAACAAATTG+AGG 0.549896 4.1:-74899616 MS.gene87586:CDS
TACATATGGAATCCATCCAC+TGG 0.550790 4.1:-74899810 MS.gene87586:CDS
CAGGAATGCCATCAACAGAA+AGG 0.557378 4.1:+74899274 None:intergenic
ATATGTAGATGTTTGGTCGT+TGG 0.557551 4.1:+74899826 None:intergenic
GAGTCTCTGCTTTCACTCCC+CGG 0.557564 4.1:-74899102 MS.gene87586:CDS
AATACATGGAAACAAATTGA+GGG 0.558519 4.1:-74899615 MS.gene87586:CDS
TAAACTTGCTCATTGTCACC+GGG 0.560747 4.1:+74899084 None:intergenic
GCTCTGTAGTCAAAATCACT+TGG 0.561634 4.1:+74899435 None:intergenic
CCAAGTAATCATCTCTTGAC+TGG 0.573666 4.1:+74899712 None:intergenic
TTGCCTTTGATTTAATGGAA+AGG 0.580450 4.1:-74899479 MS.gene87586:CDS
AAAAGGGTTGCTATTTAATG+GGG 0.580733 4.1:-74899550 MS.gene87586:CDS
GTATACATGACAACTTCAGA+TGG 0.612712 4.1:+74899126 None:intergenic
TTAGTAGTAGAACATGGTCA+TGG 0.620803 4.1:-74899747 MS.gene87586:CDS
TTGGAACGAAAAGGAGACAC+AGG 0.637002 4.1:+74899771 None:intergenic
TCAACTGGAAAATAAGATCG+GGG 0.677195 4.1:+74899885 None:intergenic
TCCAAATTAGTAGTAGAACA+TGG 0.694374 4.1:-74899753 MS.gene87586:CDS
AAACTTGCTCATTGTCACCG+GGG 0.738393 4.1:+74899085 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTATACAGTTGAAATA+TGG - chr4.1:74899723-74899742 MS.gene87586:CDS 15.0%
!! TAATTATACAGTTGAAATAT+GGG - chr4.1:74899724-74899743 MS.gene87586:CDS 15.0%
!! ATTAGTTACGATTTGATTAT+AGG + chr4.1:74899393-74899412 None:intergenic 20.0%
!! TTAGTTACGATTTGATTATA+GGG + chr4.1:74899392-74899411 None:intergenic 20.0%
!!! TATTTGTTTTTTAAATCCAG+TGG + chr4.1:74899276-74899295 None:intergenic 20.0%
! AATACATGGAAACAAATTGA+GGG - chr4.1:74899452-74899471 MS.gene87586:CDS 25.0%
! ATGATAAAGGACAACTATTA+AGG - chr4.1:74899897-74899916 MS.gene87586:CDS 25.0%
! TAATACATGGAAACAAATTG+AGG - chr4.1:74899451-74899470 MS.gene87586:CDS 25.0%
! TATTTAATGGGGTTATTCAT+TGG - chr4.1:74899528-74899547 MS.gene87586:CDS 25.0%
! TGAAACTAGATCTATAGATT+TGG - chr4.1:74899106-74899125 MS.gene87586:CDS 25.0%
! TTGGTGAAGTATAATGATAA+AGG - chr4.1:74899884-74899903 MS.gene87586:CDS 25.0%
! TTTCAACTGGAAAATAAGAT+CGG + chr4.1:74899187-74899206 None:intergenic 25.0%
!! TATTTTCCAGTTGAAATTAG+AGG - chr4.1:74899191-74899210 MS.gene87586:CDS 25.0%
!!! AAGAAATCTTAGTTCTAGAT+TGG - chr4.1:74899865-74899884 MS.gene87586:CDS 25.0%
AAATTAGAGGTTCATGTAGA+GGG - chr4.1:74899204-74899223 MS.gene87586:CDS 30.0%
ACCATGTTCTACTACTAATT+TGG + chr4.1:74899318-74899337 None:intergenic 30.0%
CTTCCTTTCCATTAAATCAA+AGG + chr4.1:74899594-74899613 None:intergenic 30.0%
TAGTCAAAATCACTTGGAAT+AGG + chr4.1:74899629-74899648 None:intergenic 30.0%
TCCAAATTAGTAGTAGAACA+TGG - chr4.1:74899314-74899333 MS.gene87586:CDS 30.0%
TCTCGTTTAGAGATAATACA+TGG - chr4.1:74899438-74899457 MS.gene87586:CDS 30.0%
TTCAACTGGAAAATAAGATC+GGG + chr4.1:74899186-74899205 None:intergenic 30.0%
! ACTACTAATTTGGAACGAAA+AGG + chr4.1:74899308-74899327 None:intergenic 30.0%
! ATAGGTTGAAAGTAGTAATC+AGG + chr4.1:74899815-74899834 None:intergenic 30.0%
! ATCTGAAGTTGTCATGTATA+CGG - chr4.1:74899943-74899962 MS.gene87586:CDS 30.0%
! CATTGTTGCCTTTGATTTAA+TGG - chr4.1:74899583-74899602 MS.gene87586:CDS 30.0%
! TTGCCTTTGATTTAATGGAA+AGG - chr4.1:74899588-74899607 MS.gene87586:CDS 30.0%
!! AAAAGGGTTGCTATTTAATG+GGG - chr4.1:74899517-74899536 MS.gene87586:CDS 30.0%
!! AGAAAAGGGTTGCTATTTAA+TGG - chr4.1:74899515-74899534 MS.gene87586:CDS 30.0%
!! ATTAGTACATTCTGGTTTGT+GGG - chr4.1:74899655-74899674 MS.gene87586:CDS 30.0%
!! GAAAAGGGTTGCTATTTAAT+GGG - chr4.1:74899516-74899535 MS.gene87586:CDS 30.0%
!! TTCAGATGGACTATTAAAGA+AGG + chr4.1:74899930-74899949 None:intergenic 30.0%
!!! TGTTTTTTAAATCCAGTGGA+TGG + chr4.1:74899272-74899291 None:intergenic 30.0%
AAAGTAATGTTGAGTGAAGC+AGG + chr4.1:74899155-74899174 None:intergenic 35.0%
AACGACCAAACATCTACATA+TGG - chr4.1:74899243-74899262 MS.gene87586:CDS 35.0%
AACGAGAAAAACTCCAAATG+TGG + chr4.1:74899425-74899444 None:intergenic 35.0%
AAGAAGAGATGGCAACATAA+GGG + chr4.1:74899487-74899506 None:intergenic 35.0%
AATACAAAGTGCATTCGTCT+TGG - chr4.1:74899756-74899775 MS.gene87586:CDS 35.0%
ATATGTAGATGTTTGGTCGT+TGG + chr4.1:74899244-74899263 None:intergenic 35.0%
ATTTCTCAGTCTATGGGATA+TGG - chr4.1:74899688-74899707 MS.gene87586:CDS 35.0%
CATGAACCTCTAATTTCAAC+TGG + chr4.1:74899200-74899219 None:intergenic 35.0%
CCTATACACTCTACCAAAAA+CGG - chr4.1:74899830-74899849 MS.gene87586:CDS 35.0%
CTTTGCATTGTGATTTAGGT+CGG - chr4.1:74899555-74899574 MS.gene87586:CDS 35.0%
GAAATTAGAGGTTCATGTAG+AGG - chr4.1:74899203-74899222 MS.gene87586:CDS 35.0%
GGATTCCATATGTAGATGTT+TGG + chr4.1:74899251-74899270 None:intergenic 35.0%
GTATACATGACAACTTCAGA+TGG + chr4.1:74899944-74899963 None:intergenic 35.0%
TAATGGGGTTATTCATTGGT+TGG - chr4.1:74899532-74899551 MS.gene87586:CDS 35.0%
TCAACTGGAAAATAAGATCG+GGG + chr4.1:74899185-74899204 None:intergenic 35.0%
TGGAGAATTTCTCAGTCTAT+GGG - chr4.1:74899682-74899701 MS.gene87586:CDS 35.0%
TTAGTAGTAGAACATGGTCA+TGG - chr4.1:74899320-74899339 MS.gene87586:CDS 35.0%
TTGGAGAATTTCTCAGTCTA+TGG - chr4.1:74899681-74899700 MS.gene87586:CDS 35.0%
! TACAGAGCATTAGTACATTC+TGG - chr4.1:74899647-74899666 MS.gene87586:CDS 35.0%
! TTAAACTTGCTCATTGTCAC+CGG + chr4.1:74899987-74900006 None:intergenic 35.0%
!! CATTAGTACATTCTGGTTTG+TGG - chr4.1:74899654-74899673 MS.gene87586:CDS 35.0%
!! TAATGCTGTTTCACCACATT+TGG - chr4.1:74899409-74899428 MS.gene87586:CDS 35.0%
!! TGCAATAATATCGCCGTTTT+TGG + chr4.1:74899846-74899865 None:intergenic 35.0%
!! TTGGCTTTGCATTGTGATTT+AGG - chr4.1:74899551-74899570 MS.gene87586:CDS 35.0%
ACTCTTGACCTTTCTGTTGA+TGG - chr4.1:74899785-74899804 MS.gene87586:CDS 40.0%
CAAGAAGAGATGGCAACATA+AGG + chr4.1:74899488-74899507 None:intergenic 40.0%
CCAAGTAATCATCTCTTGAC+TGG + chr4.1:74899358-74899377 None:intergenic 40.0%
CCAGTCAAGAGATGATTACT+TGG - chr4.1:74899355-74899374 MS.gene87586:CDS 40.0%
CTTCTTGCAGTTGCAGAAAA+GGG - chr4.1:74899501-74899520 MS.gene87586:CDS 40.0%
GCTCTGTAGTCAAAATCACT+TGG + chr4.1:74899635-74899654 None:intergenic 40.0%
GTCAAGAGATGATTACTTGG+TGG - chr4.1:74899358-74899377 MS.gene87586:CDS 40.0%
TACATATGGAATCCATCCAC+TGG - chr4.1:74899257-74899276 MS.gene87586:CDS 40.0%
TCTTCTTGCAGTTGCAGAAA+AGG - chr4.1:74899500-74899519 MS.gene87586:CDS 40.0%
! GTAGAACATGGTCATGGTTT+TGG - chr4.1:74899326-74899345 MS.gene87586:CDS 40.0%
! TAAACTTGCTCATTGTCACC+GGG + chr4.1:74899986-74900005 None:intergenic 40.0%
!! CATTCTGGTTTGTGGGTATT+TGG - chr4.1:74899662-74899681 MS.gene87586:CDS 40.0%
!!! CCGTTTTTGGTAGAGTGTAT+AGG + chr4.1:74899833-74899852 None:intergenic 40.0%
CAGGAATGCCATCAACAGAA+AGG + chr4.1:74899796-74899815 None:intergenic 45.0%
TCTGCAACTGCAAGAAGAGA+TGG + chr4.1:74899498-74899517 None:intergenic 45.0%
TTGGAACGAAAAGGAGACAC+AGG + chr4.1:74899299-74899318 None:intergenic 45.0%
! AAACTTGCTCATTGTCACCG+GGG + chr4.1:74899985-74900004 None:intergenic 45.0%
GAGTCTCTGCTTTCACTCCC+CGG - chr4.1:74899965-74899984 MS.gene87586:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 74899083 74900006 74899083 ID=MS.gene87586
chr4.1 mRNA 74899083 74900006 74899083 ID=MS.gene87586.t1;Parent=MS.gene87586
chr4.1 exon 74899083 74900006 74899083 ID=MS.gene87586.t1.exon1;Parent=MS.gene87586.t1
chr4.1 CDS 74899083 74900006 74899083 ID=cds.MS.gene87586.t1;Parent=MS.gene87586.t1
Gene Sequence

>MS.gene87586

ATGTCTATATCAACTCAATCTCATGAAACTAGATCTATAGATTTGGAAGCATTTCTTAACAATGATGATCCTGCTTCACTCAACATTACTTTTTCGCTTCCCCGATCTTATTTTCCAGTTGAAATTAGAGGTTCATGTAGAGGGTTTATACTTTTGCACCAACGACCAAACATCTACATATGGAATCCATCCACTGGATTTAAAAAACAAATACCTGTGTCTCCTTTTCGTTCCAAATTAGTAGTAGAACATGGTCATGGTTTTGGTTATGACCAGTCAAGAGATGATTACTTGGTGGTTTCATTGCCCTATAATCAAATCGTAACTAATGCTGTTTCACCACATTTGGAGTTTTTCTCGTTTAGAGATAATACATGGAAACAAATTGAGGGTAATCACTTCCCTTATGTTGCCATCTCTTCTTGCAGTTGCAGAAAAGGGTTGCTATTTAATGGGGTTATTCATTGGTTGGCTTTGCATTGTGATTTAGGTCGGTATGTCATTGTTGCCTTTGATTTAATGGAAAGGAAGTTGTTTGAGATGCCTATTCCAAGTGATTTTGACTACAGAGCATTAGTACATTCTGGTTTGTGGGTATTTGGAGAATTTCTCAGTCTATGGGATATGGACTATGATAATGATAATTATACAGTTGAAATATGGGTGATGAAAGAATACAAAGTGCATTCGTCTTGGAATAAAACTCTTGACCTTTCTGTTGATGGCATTCCTGATTACTACTTTCAACCTATACACTCTACCAAAAACGGCGATATTATTGCAAGAAATCTTAGTTCTAGATTGGTGAAGTATAATGATAAAGGACAACTATTAAGGCATCGCTCCTTCTTTAATAGTCCATCTGAAGTTGTCATGTATACGGAGTCTCTGCTTTCACTCCCCGGTGACAATGAGCAAGTTTAA

Protein sequence

>MS.gene87586.t1

MSISTQSHETRSIDLEAFLNNDDPASLNITFSLPRSYFPVEIRGSCRGFILLHQRPNIYIWNPSTGFKKQIPVSPFRSKLVVEHGHGFGYDQSRDDYLVVSLPYNQIVTNAVSPHLEFFSFRDNTWKQIEGNHFPYVAISSCSCRKGLLFNGVIHWLALHCDLGRYVIVAFDLMERKLFEMPIPSDFDYRALVHSGLWVFGEFLSLWDMDYDNDNYTVEIWVMKEYKVHSSWNKTLDLSVDGIPDYYFQPIHSTKNGDIIARNLSSRLVKYNDKGQLLRHRSFFNSPSEVVMYTESLLSLPGDNEQV