Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064083.t1 | XP_003605032.1 | 57.7 | 291 | 51 | 2 | 1 | 219 | 62 | 352 | 2.00E-82 | 315.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064083.t1 | Q9SU30 | 26.0 | 215 | 135 | 8 | 24 | 217 | 163 | 374 | 5.6e-09 | 62.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064083.t1 | G7JVS7 | 57.7 | 291 | 51 | 2 | 1 | 219 | 62 | 352 | 1.4e-82 | 315.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064083.t1 | MTR_4g023080 | 69.744 | 195 | 57 | 2 | 28 | 220 | 159 | 353 | 2.66e-90 | 270 |
MS.gene064083.t1 | MTR_4g023080 | 82.222 | 45 | 8 | 0 | 1 | 45 | 62 | 106 | 5.83e-17 | 78.6 |
MS.gene064083.t1 | MTR_4g023130 | 69.231 | 195 | 58 | 2 | 28 | 220 | 118 | 312 | 2.49e-89 | 266 |
MS.gene064083.t1 | MTR_4g023090 | 68.020 | 197 | 46 | 3 | 42 | 221 | 190 | 386 | 1.78e-86 | 261 |
MS.gene064083.t1 | MTR_4g023090 | 76.087 | 46 | 10 | 1 | 1 | 45 | 69 | 114 | 4.15e-13 | 67.8 |
MS.gene064083.t1 | MTR_4g023380 | 65.366 | 205 | 46 | 3 | 42 | 221 | 175 | 379 | 1.34e-85 | 258 |
MS.gene064083.t1 | MTR_4g023380 | 71.739 | 46 | 12 | 1 | 1 | 45 | 69 | 114 | 2.48e-11 | 62.8 |
MS.gene064083.t1 | MTR_4g021785 | 66.484 | 182 | 59 | 1 | 42 | 221 | 174 | 355 | 1.65e-80 | 244 |
MS.gene064083.t1 | MTR_4g021785 | 71.111 | 45 | 13 | 0 | 1 | 45 | 62 | 106 | 2.76e-12 | 65.5 |
MS.gene064083.t1 | MTR_4g023120 | 58.537 | 205 | 70 | 3 | 32 | 221 | 166 | 370 | 1.89e-75 | 232 |
MS.gene064083.t1 | MTR_4g023120 | 64.444 | 45 | 16 | 0 | 1 | 45 | 56 | 100 | 6.19e-11 | 61.6 |
MS.gene064083.t1 | MTR_4g023070 | 58.333 | 204 | 70 | 3 | 32 | 220 | 166 | 369 | 2.79e-74 | 229 |
MS.gene064083.t1 | MTR_4g023070 | 64.444 | 45 | 16 | 0 | 1 | 45 | 56 | 100 | 7.75e-11 | 61.2 |
MS.gene064083.t1 | MTR_3g103020 | 58.019 | 212 | 78 | 6 | 17 | 221 | 171 | 378 | 8.20e-72 | 223 |
MS.gene064083.t1 | MTR_4g023440 | 61.878 | 181 | 33 | 1 | 41 | 221 | 188 | 332 | 1.42e-70 | 218 |
MS.gene064083.t1 | MTR_4g023150 | 63.736 | 182 | 61 | 3 | 43 | 219 | 177 | 358 | 2.99e-70 | 218 |
MS.gene064083.t1 | MTR_8g040935 | 55.502 | 209 | 80 | 6 | 22 | 221 | 4 | 208 | 1.80e-69 | 211 |
MS.gene064083.t1 | MTR_4g023200 | 62.088 | 182 | 64 | 3 | 43 | 219 | 177 | 358 | 6.76e-69 | 215 |
MS.gene064083.t1 | MTR_4g023190 | 63.736 | 182 | 60 | 4 | 43 | 219 | 177 | 357 | 1.27e-68 | 214 |
MS.gene064083.t1 | MTR_4g116330 | 56.684 | 187 | 75 | 3 | 41 | 221 | 194 | 380 | 2.82e-66 | 209 |
MS.gene064083.t1 | MTR_4g116320 | 59.239 | 184 | 67 | 4 | 41 | 218 | 74 | 255 | 7.92e-66 | 204 |
MS.gene064083.t1 | MTR_6g060650 | 55.102 | 196 | 80 | 5 | 29 | 220 | 181 | 372 | 4.56e-65 | 206 |
MS.gene064083.t1 | MTR_4g109270 | 50.439 | 228 | 101 | 6 | 5 | 221 | 138 | 364 | 1.92e-63 | 201 |
MS.gene064083.t1 | MTR_6g463430 | 59.358 | 187 | 65 | 5 | 41 | 221 | 21 | 202 | 1.70e-62 | 194 |
MS.gene064083.t1 | MTR_4g117720 | 57.812 | 192 | 68 | 6 | 41 | 221 | 189 | 378 | 1.01e-61 | 197 |
MS.gene064083.t1 | MTR_4g109280 | 55.319 | 188 | 74 | 5 | 41 | 221 | 175 | 359 | 1.13e-60 | 194 |
MS.gene064083.t1 | MTR_8g433030 | 47.951 | 244 | 92 | 8 | 6 | 216 | 96 | 337 | 5.80e-59 | 189 |
MS.gene064083.t1 | MTR_4g117850 | 52.582 | 213 | 85 | 8 | 17 | 218 | 169 | 376 | 4.89e-58 | 187 |
MS.gene064083.t1 | MTR_4g117780 | 54.497 | 189 | 78 | 3 | 41 | 221 | 179 | 367 | 3.26e-56 | 182 |
MS.gene064083.t1 | MTR_4g122850 | 56.316 | 190 | 72 | 9 | 41 | 221 | 177 | 364 | 1.24e-55 | 182 |
MS.gene064083.t1 | MTR_4g117770 | 54.737 | 190 | 78 | 3 | 40 | 221 | 178 | 367 | 1.53e-55 | 181 |
MS.gene064083.t1 | MTR_4g117810 | 54.737 | 190 | 78 | 3 | 40 | 221 | 178 | 367 | 1.53e-55 | 181 |
MS.gene064083.t1 | MTR_8g032390 | 55.191 | 183 | 74 | 6 | 40 | 216 | 190 | 370 | 3.03e-55 | 180 |
MS.gene064083.t1 | MTR_3g034180 | 53.886 | 193 | 75 | 6 | 40 | 221 | 300 | 489 | 4.94e-55 | 182 |
MS.gene064083.t1 | MTR_3g034160 | 52.381 | 210 | 80 | 6 | 21 | 220 | 175 | 374 | 3.30e-54 | 178 |
MS.gene064083.t1 | MTR_4g094365 | 53.439 | 189 | 79 | 6 | 40 | 221 | 178 | 364 | 4.18e-54 | 177 |
MS.gene064083.t1 | MTR_8g433040 | 52.406 | 187 | 73 | 4 | 40 | 221 | 189 | 364 | 5.73e-52 | 172 |
MS.gene064083.t1 | MTR_8g032380 | 52.406 | 187 | 73 | 4 | 40 | 221 | 189 | 364 | 5.73e-52 | 172 |
MS.gene064083.t1 | MTR_5g070130 | 47.959 | 196 | 88 | 6 | 40 | 221 | 182 | 377 | 8.08e-51 | 169 |
MS.gene064083.t1 | MTR_3g034130 | 50.802 | 187 | 77 | 6 | 22 | 199 | 172 | 352 | 3.28e-50 | 167 |
MS.gene064083.t1 | MTR_5g097210 | 52.973 | 185 | 75 | 7 | 41 | 217 | 179 | 359 | 3.47e-49 | 165 |
MS.gene064083.t1 | MTR_4g118380 | 51.955 | 179 | 71 | 5 | 29 | 196 | 183 | 357 | 1.06e-48 | 163 |
MS.gene064083.t1 | MTR_5g070080 | 52.660 | 188 | 82 | 6 | 40 | 221 | 200 | 386 | 2.15e-48 | 163 |
MS.gene064083.t1 | MTR_4g118400 | 51.053 | 190 | 75 | 6 | 29 | 215 | 120 | 294 | 2.99e-48 | 160 |
MS.gene064083.t1 | MTR_4g117870 | 49.189 | 185 | 56 | 6 | 40 | 221 | 118 | 267 | 6.34e-48 | 158 |
MS.gene064083.t1 | MTR_1g055195 | 44.545 | 220 | 103 | 8 | 14 | 218 | 260 | 475 | 7.34e-47 | 161 |
MS.gene064083.t1 | MTR_5g070088 | 47.396 | 192 | 88 | 5 | 40 | 221 | 198 | 386 | 2.59e-45 | 155 |
MS.gene064083.t1 | MTR_1g055175 | 44.974 | 189 | 93 | 6 | 41 | 220 | 14 | 200 | 6.05e-45 | 149 |
MS.gene064083.t1 | MTR_4g116330 | 44.385 | 187 | 61 | 3 | 40 | 221 | 193 | 341 | 1.38e-42 | 147 |
MS.gene064083.t1 | MTR_4g117530 | 43.956 | 182 | 71 | 4 | 41 | 221 | 102 | 253 | 1.43e-42 | 144 |
MS.gene064083.t1 | MTR_1g055165 | 38.400 | 250 | 114 | 6 | 9 | 220 | 70 | 317 | 7.18e-42 | 144 |
MS.gene064083.t1 | MTR_1g055135 | 48.148 | 162 | 73 | 4 | 67 | 220 | 216 | 374 | 1.24e-40 | 142 |
MS.gene064083.t1 | MTR_7g079370 | 45.161 | 186 | 88 | 6 | 40 | 215 | 169 | 350 | 9.03e-40 | 140 |
MS.gene064083.t1 | MTR_4g023430 | 79.012 | 81 | 12 | 1 | 146 | 221 | 142 | 222 | 2.30e-37 | 130 |
MS.gene064083.t1 | MTR_7g079400 | 42.000 | 200 | 95 | 8 | 37 | 221 | 144 | 337 | 7.43e-37 | 132 |
MS.gene064083.t1 | MTR_1g055250 | 42.857 | 175 | 89 | 7 | 41 | 208 | 83 | 253 | 3.98e-36 | 129 |
MS.gene064083.t1 | MTR_4g117750 | 45.641 | 195 | 87 | 7 | 41 | 220 | 168 | 358 | 2.41e-35 | 130 |
MS.gene064083.t1 | MTR_4g117750 | 50.758 | 132 | 54 | 2 | 99 | 219 | 350 | 481 | 7.85e-32 | 121 |
MS.gene064083.t1 | MTR_5g023000 | 61.616 | 99 | 36 | 1 | 125 | 221 | 1 | 99 | 2.71e-35 | 120 |
MS.gene064083.t1 | MTR_4g118360 | 55.039 | 129 | 47 | 5 | 99 | 220 | 1 | 125 | 5.59e-35 | 121 |
MS.gene064083.t1 | MTR_4g118370 | 43.316 | 187 | 77 | 8 | 40 | 218 | 92 | 257 | 7.20e-35 | 124 |
MS.gene064083.t1 | MTR_4g122860 | 41.096 | 219 | 90 | 10 | 12 | 221 | 132 | 320 | 1.29e-34 | 126 |
MS.gene064083.t1 | MTR_8g102520 | 38.021 | 192 | 104 | 6 | 41 | 221 | 135 | 322 | 2.35e-33 | 122 |
MS.gene064083.t1 | MTR_4g121580 | 43.258 | 178 | 65 | 7 | 41 | 211 | 191 | 339 | 2.35e-30 | 115 |
MS.gene064083.t1 | MTR_8g098830 | 37.705 | 183 | 99 | 7 | 41 | 215 | 40 | 215 | 2.62e-28 | 107 |
MS.gene064083.t1 | MTR_2g048580 | 35.567 | 194 | 98 | 8 | 41 | 221 | 163 | 342 | 7.05e-28 | 108 |
MS.gene064083.t1 | MTR_7g079450 | 43.262 | 141 | 72 | 4 | 84 | 221 | 2 | 137 | 2.10e-27 | 102 |
MS.gene064083.t1 | MTR_7g117720 | 35.537 | 242 | 99 | 9 | 9 | 215 | 52 | 271 | 3.03e-27 | 105 |
MS.gene064083.t1 | MTR_7g079420 | 38.378 | 185 | 94 | 7 | 51 | 221 | 966 | 1144 | 7.41e-27 | 108 |
MS.gene064083.t1 | MTR_4g114700 | 36.408 | 206 | 67 | 5 | 15 | 212 | 69 | 218 | 3.88e-25 | 99.0 |
MS.gene064083.t1 | MTR_4g023100 | 83.636 | 55 | 9 | 0 | 167 | 221 | 65 | 119 | 1.38e-24 | 94.4 |
MS.gene064083.t1 | MTR_4g117430 | 53.409 | 88 | 36 | 3 | 41 | 125 | 70 | 155 | 6.68e-21 | 85.5 |
MS.gene064083.t1 | MTR_4g122840 | 44.118 | 136 | 37 | 5 | 90 | 221 | 164 | 264 | 1.86e-20 | 87.0 |
MS.gene064083.t1 | MTR_8g013010 | 49.057 | 106 | 44 | 5 | 19 | 122 | 212 | 309 | 4.11e-19 | 84.3 |
MS.gene064083.t1 | MTR_8g013005 | 63.793 | 58 | 19 | 1 | 165 | 220 | 1 | 58 | 2.02e-16 | 71.2 |
MS.gene064083.t1 | MTR_1g055145 | 35.338 | 133 | 61 | 3 | 9 | 139 | 93 | 202 | 3.76e-15 | 72.8 |
MS.gene064083.t1 | MTR_2g028160 | 32.624 | 141 | 81 | 6 | 42 | 171 | 201 | 338 | 6.16e-13 | 67.4 |
MS.gene064083.t1 | MTR_3g036290 | 32.768 | 177 | 97 | 9 | 46 | 213 | 193 | 356 | 1.91e-12 | 65.9 |
MS.gene064083.t1 | MTR_2g064960 | 70.732 | 41 | 10 | 1 | 182 | 220 | 18 | 58 | 7.60e-12 | 58.9 |
MS.gene064083.t1 | MTR_2g028130 | 29.286 | 140 | 87 | 5 | 41 | 171 | 200 | 336 | 1.16e-11 | 63.5 |
MS.gene064083.t1 | MTR_1g068875 | 28.777 | 139 | 88 | 5 | 44 | 174 | 179 | 314 | 1.38e-11 | 63.5 |
MS.gene064083.t1 | MTR_4g109290 | 62.264 | 53 | 18 | 1 | 171 | 221 | 136 | 188 | 3.29e-11 | 60.5 |
MS.gene064083.t1 | MTR_6g034720 | 41.772 | 79 | 43 | 2 | 40 | 117 | 108 | 184 | 3.39e-11 | 60.8 |
MS.gene064083.t1 | MTR_2g025420 | 29.524 | 210 | 123 | 11 | 24 | 213 | 188 | 392 | 8.51e-11 | 61.2 |
MS.gene064083.t1 | MTR_2g055970 | 26.816 | 179 | 121 | 7 | 43 | 213 | 384 | 560 | 9.92e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064083.t1 | AT3G06240 | 32.000 | 150 | 92 | 5 | 41 | 186 | 245 | 388 | 1.45e-11 | 63.5 |
Find 43 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTAACCATTTACTTAATTC+TGG | 0.247939 | 4.3:-75060960 | MS.gene064083:CDS |
TTGGAGAATTTCTCAGTCTA+TGG | 0.267319 | 4.3:-75060926 | MS.gene064083:CDS |
ATGATAAAGGACAGCTATTA+AGG | 0.278962 | 4.3:-75060716 | MS.gene064083:CDS |
AGAAAAGGGTGTCTATTTAA+TGG | 0.280867 | 4.3:-75061086 | MS.gene064083:CDS |
ATAAGGATACAGTTGAAATA+TGG | 0.287555 | 4.3:-75060890 | MS.gene064083:CDS |
AATTGTTGCCTTTGATTTAA+CGG | 0.294431 | 4.3:-75061018 | MS.gene064083:CDS |
CACTTCCCTTATGCTGTTCC+TGG | 0.319967 | 4.3:-75061116 | MS.gene064083:CDS |
GAAAAGGGTGTCTATTTAAT+GGG | 0.320229 | 4.3:-75061085 | MS.gene064083:CDS |
TATTTAATGGGGCTATTCAT+TGG | 0.329021 | 4.3:-75061073 | MS.gene064083:CDS |
TCAACCGGAAAATAAGATTC+TGG | 0.339211 | 4.3:+75061388 | None:intergenic |
TTGTTTGAGATGCCTCTTCC+AGG | 0.350585 | 4.3:-75060987 | MS.gene064083:CDS |
AGGAAATCTTAATTCTAGAT+TGG | 0.414662 | 4.3:-75060748 | MS.gene064083:CDS |
CACGAACCTCTAATTTCAAC+CGG | 0.420465 | 4.3:+75061373 | None:intergenic |
CTATTAAGGCATCGCTCCTT+CGG | 0.422078 | 4.3:-75060702 | MS.gene064083:CDS |
TGATTACCAGGAACAGCATA+AGG | 0.434344 | 4.3:+75061110 | None:intergenic |
GTTCCTGGTAATCACAGAAA+AGG | 0.449998 | 4.3:-75061101 | MS.gene064083:CDS |
TTGGTCAAGTATAATGATAA+AGG | 0.451105 | 4.3:-75060729 | MS.gene064083:CDS |
TAAACTTGCTCGTTGTCACC+AGG | 0.464044 | 4.3:+75060630 | None:intergenic |
AAATTAAGATTCTGTGAAGC+AGG | 0.466279 | 4.3:+75061418 | None:intergenic |
TAAGGATACAGTTGAAATAT+GGG | 0.473963 | 4.3:-75060889 | MS.gene064083:CDS |
TTTCCTTTCCGTTAAATCAA+AGG | 0.475134 | 4.3:+75061010 | None:intergenic |
TGGAGAATTTCTCAGTCTAT+GGG | 0.489976 | 4.3:-75060925 | MS.gene064083:CDS |
TAATGGGGCTATTCATTGGA+TGG | 0.501912 | 4.3:-75061069 | MS.gene064083:CDS |
AATACAAAGTGCATTCGTCT+TGG | 0.503299 | 4.3:-75060857 | MS.gene064083:CDS |
ATAGATTGAATTTCATGAGA+TGG | 0.504788 | 4.3:+75061469 | None:intergenic |
ATGGGCTGTGGACTATGATA+AGG | 0.510847 | 4.3:-75060907 | MS.gene064083:CDS |
ATAGGGTGAAAATAGCGATC+AGG | 0.512584 | 4.3:+75060801 | None:intergenic |
TTCCTGGTAATCACAGAAAA+GGG | 0.536965 | 4.3:-75061100 | MS.gene064083:CDS |
GAGTCTCTACTTTCACTCCC+TGG | 0.547203 | 4.3:-75060648 | MS.gene064083:CDS |
ATTTCTCAGTCTATGGGCTG+TGG | 0.553738 | 4.3:-75060919 | MS.gene064083:CDS |
TCTCATTTAGAGATAATGCA+TGG | 0.564733 | 4.3:-75061157 | MS.gene064083:intron |
AATGCATGGAAAGAAATTGA+AGG | 0.565650 | 4.3:-75061143 | MS.gene064083:CDS |
TTGCCTTTGATTTAACGGAA+AGG | 0.569675 | 4.3:-75061013 | MS.gene064083:CDS |
TGGTTAAAATCACCTGGAAG+AGG | 0.570122 | 4.3:+75060975 | None:intergenic |
GTGAAAATAGCGATCAGGAA+TGG | 0.580924 | 4.3:+75060806 | None:intergenic |
GATTACCAGGAACAGCATAA+GGG | 0.587351 | 4.3:+75061111 | None:intergenic |
AGTAAATGGTTAAAATCACC+TGG | 0.587427 | 4.3:+75060969 | None:intergenic |
CTATGCGTCGTGATTTACGT+TGG | 0.619317 | 4.3:-75061046 | MS.gene064083:CDS |
AATTAAGATTCTGTGAAGCA+GGG | 0.631097 | 4.3:+75061419 | None:intergenic |
AAACTTGCTCGTTGTCACCA+GGG | 0.636630 | 4.3:+75060631 | None:intergenic |
AAAAGGGTGTCTATTTAATG+GGG | 0.654843 | 4.3:-75061084 | MS.gene064083:CDS |
ATCGGATTGACTATTACCGA+AGG | 0.667712 | 4.3:+75060686 | None:intergenic |
CTCTGTATACATGACAACAT+CGG | 0.674049 | 4.3:+75060668 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAACCAGAATTAAGTAAA+TGG | + | chr4.3:75061161-75061180 | None:intergenic | 20.0% |
!! | ACAAAAAATGGTGATATTAT+CGG | - | chr4.3:75061342-75061361 | MS.gene064083:intron | 20.0% |
!! | TTTAACCATTTACTTAATTC+TGG | - | chr4.3:75061153-75061172 | MS.gene064083:intron | 20.0% |
!!! | ATTTACTTAATTCTGGTTTT+TGG | - | chr4.3:75061160-75061179 | MS.gene064083:intron | 20.0% |
!!! | TTTACTTAATTCTGGTTTTT+GGG | - | chr4.3:75061161-75061180 | MS.gene064083:intron | 20.0% |
! | AGGAAATCTTAATTCTAGAT+TGG | - | chr4.3:75061365-75061384 | MS.gene064083:intron | 25.0% |
! | ATAAGGATACAGTTGAAATA+TGG | - | chr4.3:75061223-75061242 | MS.gene064083:intron | 25.0% |
! | ATAGATTGAATTTCATGAGA+TGG | + | chr4.3:75060647-75060666 | None:intergenic | 25.0% |
! | TAAGGATACAGTTGAAATAT+GGG | - | chr4.3:75061224-75061243 | MS.gene064083:intron | 25.0% |
! | TTGGTCAAGTATAATGATAA+AGG | - | chr4.3:75061384-75061403 | MS.gene064083:CDS | 25.0% |
!! | AATTGTTGCCTTTGATTTAA+CGG | - | chr4.3:75061095-75061114 | MS.gene064083:CDS | 25.0% |
!! | GCTAATAATTTGGAATCAAA+AGG | + | chr4.3:75060851-75060870 | None:intergenic | 25.0% |
!!! | GATAATATCACCATTTTTTG+TGG | + | chr4.3:75061343-75061362 | None:intergenic | 25.0% |
!!! | TGTTTTTTAAATCCAGTAGA+TGG | + | chr4.3:75060815-75060834 | None:intergenic | 25.0% |
AAAAATGGTGATATTATCGG+AGG | - | chr4.3:75061345-75061364 | MS.gene064083:intron | 30.0% | |
AAATGTGTTGAAACAGCATT+AGG | + | chr4.3:75060928-75060947 | None:intergenic | 30.0% | |
AAATTAAGATTCTGTGAAGC+AGG | + | chr4.3:75060698-75060717 | None:intergenic | 30.0% | |
AATGCATGGAAAGAAATTGA+AGG | - | chr4.3:75060970-75060989 | MS.gene064083:CDS | 30.0% | |
AATTAAGATTCTGTGAAGCA+GGG | + | chr4.3:75060697-75060716 | None:intergenic | 30.0% | |
AGTAAATGGTTAAAATCACC+TGG | + | chr4.3:75061147-75061166 | None:intergenic | 30.0% | |
ATGATAAAGGACAGCTATTA+AGG | - | chr4.3:75061397-75061416 | MS.gene064083:CDS | 30.0% | |
ATTAGGTATGGTTGGATTAT+AGG | + | chr4.3:75060911-75060930 | None:intergenic | 30.0% | |
TATTTAATGGGGCTATTCAT+TGG | - | chr4.3:75061040-75061059 | MS.gene064083:CDS | 30.0% | |
TCTCATTTAGAGATAATGCA+TGG | - | chr4.3:75060956-75060975 | MS.gene064083:CDS | 30.0% | |
TTTCCTTTCCGTTAAATCAA+AGG | + | chr4.3:75061106-75061125 | None:intergenic | 30.0% | |
! | TATTTTCCGGTTGAAATTAG+AGG | - | chr4.3:75060734-75060753 | MS.gene064083:CDS | 30.0% |
! | TTGACAAGGTGCTAATAATT+TGG | + | chr4.3:75060861-75060880 | None:intergenic | 30.0% |
!! | AAAAGGGTGTCTATTTAATG+GGG | - | chr4.3:75061029-75061048 | MS.gene064083:CDS | 30.0% |
!! | AGAAAAGGGTGTCTATTTAA+TGG | - | chr4.3:75061027-75061046 | MS.gene064083:CDS | 30.0% |
!! | GAAAAGGGTGTCTATTTAAT+GGG | - | chr4.3:75061028-75061047 | MS.gene064083:CDS | 30.0% |
!!! | AATTCTGGTTTTTGGGTATT+TGG | - | chr4.3:75061168-75061187 | MS.gene064083:intron | 30.0% |
!!! | CATTTTTTGTGGAGTACATA+GGG | + | chr4.3:75061332-75061351 | None:intergenic | 30.0% |
AAATTAGAGGTTCGTGTAGA+GGG | - | chr4.3:75060747-75060766 | MS.gene064083:CDS | 35.0% | |
AATACAAAGTGCATTCGTCT+TGG | - | chr4.3:75061256-75061275 | MS.gene064083:intron | 35.0% | |
ATATGTAGATGTTTGGACGA+CGG | + | chr4.3:75060787-75060806 | None:intergenic | 35.0% | |
CAAGTAATCATCTCTTGACA+AGG | + | chr4.3:75060875-75060894 | None:intergenic | 35.0% | |
CCTATGTACTCCACAAAAAA+TGG | - | chr4.3:75061330-75061349 | MS.gene064083:intron | 35.0% | |
CTCTGTATACATGACAACAT+CGG | + | chr4.3:75061448-75061467 | None:intergenic | 35.0% | |
CTTGTCAAGAGATGATTACT+TGG | - | chr4.3:75060873-75060892 | MS.gene064083:CDS | 35.0% | |
GGATTCCATATGTAGATGTT+TGG | + | chr4.3:75060794-75060813 | None:intergenic | 35.0% | |
TACATATGGAATCCATCTAC+TGG | - | chr4.3:75060800-75060819 | MS.gene064083:CDS | 35.0% | |
TCAACCGGAAAATAAGATTC+TGG | + | chr4.3:75060728-75060747 | None:intergenic | 35.0% | |
TGGAGAATTTCTCAGTCTAT+GGG | - | chr4.3:75061188-75061207 | MS.gene064083:intron | 35.0% | |
TGTTGAAACAGCATTAGGTA+TGG | + | chr4.3:75060923-75060942 | None:intergenic | 35.0% | |
TTCCTGGTAATCACAGAAAA+GGG | - | chr4.3:75061013-75061032 | MS.gene064083:CDS | 35.0% | |
TTGGAGAATTTCTCAGTCTA+TGG | - | chr4.3:75061187-75061206 | MS.gene064083:intron | 35.0% | |
! | TTGCCTTTGATTTAACGGAA+AGG | - | chr4.3:75061100-75061119 | MS.gene064083:CDS | 35.0% |
!!! | CCATTTTTTGTGGAGTACAT+AGG | + | chr4.3:75061333-75061352 | None:intergenic | 35.0% |
!!! | GCTTCCAGAATCTTATTTTC+CGG | - | chr4.3:75060721-75060740 | MS.gene064083:CDS | 35.0% |
ATAGGGTGAAAATAGCGATC+AGG | + | chr4.3:75061315-75061334 | None:intergenic | 40.0% | |
ATCGGATTGACTATTACCGA+AGG | + | chr4.3:75061430-75061449 | None:intergenic | 40.0% | |
CACGAACCTCTAATTTCAAC+CGG | + | chr4.3:75060743-75060762 | None:intergenic | 40.0% | |
GAAACAGCATTAGGTATGGT+TGG | + | chr4.3:75060919-75060938 | None:intergenic | 40.0% | |
GAAATTAGAGGTTCGTGTAG+AGG | - | chr4.3:75060746-75060765 | MS.gene064083:CDS | 40.0% | |
GATTACCAGGAACAGCATAA+GGG | + | chr4.3:75061005-75061024 | None:intergenic | 40.0% | |
GTCAAGAGATGATTACTTGG+TGG | - | chr4.3:75060876-75060895 | MS.gene064083:CDS | 40.0% | |
GTCGTCCAAACATCTACATA+TGG | - | chr4.3:75060786-75060805 | MS.gene064083:CDS | 40.0% | |
GTGAAAATAGCGATCAGGAA+TGG | + | chr4.3:75061310-75061329 | None:intergenic | 40.0% | |
GTTCCTGGTAATCACAGAAA+AGG | - | chr4.3:75061012-75061031 | MS.gene064083:CDS | 40.0% | |
TAATGGGGCTATTCATTGGA+TGG | - | chr4.3:75061044-75061063 | MS.gene064083:CDS | 40.0% | |
TGATTACCAGGAACAGCATA+AGG | + | chr4.3:75061006-75061025 | None:intergenic | 40.0% | |
TGGTTAAAATCACCTGGAAG+AGG | + | chr4.3:75061141-75061160 | None:intergenic | 40.0% | |
TTGGAATCAAAAGGAGACAC+AGG | + | chr4.3:75060842-75060861 | None:intergenic | 40.0% | |
CTATGCGTCGTGATTTACGT+TGG | - | chr4.3:75061067-75061086 | MS.gene064083:CDS | 45.0% | |
! | AAACTTGCTCGTTGTCACCA+GGG | + | chr4.3:75061485-75061504 | None:intergenic | 45.0% |
! | ATGGGCTGTGGACTATGATA+AGG | - | chr4.3:75061206-75061225 | MS.gene064083:intron | 45.0% |
! | ATTTCTCAGTCTATGGGCTG+TGG | - | chr4.3:75061194-75061213 | MS.gene064083:intron | 45.0% |
! | CACCCTTTTCTGTGATTACC+AGG | + | chr4.3:75061018-75061037 | None:intergenic | 45.0% |
! | TAAACTTGCTCGTTGTCACC+AGG | + | chr4.3:75061486-75061505 | None:intergenic | 45.0% |
! | TTGTTTGAGATGCCTCTTCC+AGG | - | chr4.3:75061126-75061145 | MS.gene064083:CDS | 45.0% |
!! | CTATTAAGGCATCGCTCCTT+CGG | - | chr4.3:75061411-75061430 | MS.gene064083:CDS | 45.0% |
CACTTCCCTTATGCTGTTCC+TGG | - | chr4.3:75060997-75061016 | MS.gene064083:CDS | 50.0% | |
GAGTCTCTACTTTCACTCCC+TGG | - | chr4.3:75061465-75061484 | MS.gene064083:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 75060629 | 75061506 | 75060629 | ID=MS.gene064083 |
chr4.3 | mRNA | 75060629 | 75061506 | 75060629 | ID=MS.gene064083.t1;Parent=MS.gene064083 |
chr4.3 | exon | 75061380 | 75061506 | 75061380 | ID=MS.gene064083.t1.exon1;Parent=MS.gene064083.t1 |
chr4.3 | CDS | 75061380 | 75061506 | 75061380 | ID=cds.MS.gene064083.t1;Parent=MS.gene064083.t1 |
chr4.3 | exon | 75060629 | 75061167 | 75060629 | ID=MS.gene064083.t1.exon2;Parent=MS.gene064083.t1 |
chr4.3 | CDS | 75060629 | 75061167 | 75060629 | ID=cds.MS.gene064083.t1;Parent=MS.gene064083.t1 |
Gene Sequence |
Protein sequence |