AlfalfaGEDB | MS.gene40982

M. sativa cultivar XinJiangDaYe / MS.gene40982

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40982.t1	RHN79377.1	77.3	163	35	1	1	163	259	419	1.50E-66	262.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40982.t1	A0A072VJR7	77.3	163	35	1	1	163	158	318	1.1e-66	262.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene40982	MS.gene024011	PPI
MS.gene40982	MS.gene58241	PPI
MS.gene40982	MS.gene064109	PPI
MS.gene40982	MS.gene058696	PPI
MS.gene40982	MS.gene009893	PPI
MS.gene064104	MS.gene40982	PPI
MS.gene40982	MS.gene85043	PPI
MS.gene041491	MS.gene40982	PPI
MS.gene40982	MS.gene062698	PPI
MS.gene43789	MS.gene40982	PPI
MS.gene059096	MS.gene40982	PPI
MS.gene57528	MS.gene40982	PPI
MS.gene40982	MS.gene033083	PPI
MS.gene006711	MS.gene40982	PPI
MS.gene27285	MS.gene40982	PPI
MS.gene072177	MS.gene40982	PPI
MS.gene064091	MS.gene40982	PPI
MS.gene064112	MS.gene40982	PPI
MS.gene40982	MS.gene40886	PPI
MS.gene045476	MS.gene40982	PPI
MS.gene24208	MS.gene40982	PPI
MS.gene40982	MS.gene036663	PPI
MS.gene50307	MS.gene40982	PPI
MS.gene43796	MS.gene40982	PPI
MS.gene034690	MS.gene40982	PPI
MS.gene40982	MS.gene68580	PPI
MS.gene40982	MS.gene041391	PPI
MS.gene58312	MS.gene40982	PPI
MS.gene96407	MS.gene40982	PPI
MS.gene40982	MS.gene57525	PPI
MS.gene40982	MS.gene40986	PPI
MS.gene77857	MS.gene40982	PPI
MS.gene40982	MS.gene030114	PPI
MS.gene51191	MS.gene40982	PPI
MS.gene40982	MS.gene88774	PPI
MS.gene40982	MS.gene045474	PPI
MS.gene40982	MS.gene036558	PPI
MS.gene40982	MS.gene87554	PPI
MS.gene40982	MS.gene009891	PPI
MS.gene40982	MS.gene27051	PPI
MS.gene033430	MS.gene40982	PPI
MS.gene50298	MS.gene40982	PPI
MS.gene40982	MS.gene40984	PPI
MS.gene40982	MS.gene064108	PPI
MS.gene036583	MS.gene40982	PPI
MS.gene40982	MS.gene016220	PPI
MS.gene88780	MS.gene40982	PPI
MS.gene40982	MS.gene24208	PPI
MS.gene40982	MS.gene58317	PPI
MS.gene71159	MS.gene40982	PPI
MS.gene96448	MS.gene40982	PPI
MS.gene058692	MS.gene40982	PPI
MS.gene041392	MS.gene40982	PPI
MS.gene40982	MS.gene58240	PPI
MS.gene40982	MS.gene27284	PPI
MS.gene63658	MS.gene40982	PPI
MS.gene033081	MS.gene40982	PPI
MS.gene40982	MS.gene063472	PPI
MS.gene40982	MS.gene57717	PPI
MS.gene40982	MS.gene034680	PPI
MS.gene031591	MS.gene40982	PPI
MS.gene40982	MS.gene48221	PPI
MS.gene40982	MS.gene044563	PPI
MS.gene40982	MS.gene50327	PPI
MS.gene40982	MS.gene066626	PPI
MS.gene51199	MS.gene40982	PPI
MS.gene40982	MS.gene063474	PPI
MS.gene57536	MS.gene40982	PPI
MS.gene40982	MS.gene51190	PPI
MS.gene019503	MS.gene40982	PPI
MS.gene40982	MS.gene044426	PPI
MS.gene40982	MS.gene034681	PPI
MS.gene87559	MS.gene40982	PPI
MS.gene40982	MS.gene57532	PPI
MS.gene40982	MS.gene033442	PPI
MS.gene40982	MS.gene009892	PPI
MS.gene041475	MS.gene40982	PPI
MS.gene31587	MS.gene40982	PPI
MS.gene033441	MS.gene40982	PPI
MS.gene40982	MS.gene058669	PPI
MS.gene40982	MS.gene066120	PPI
MS.gene40982	MS.gene51192	PPI
MS.gene063826	MS.gene40982	PPI
MS.gene060367	MS.gene40982	PPI
MS.gene40982	MS.gene041489	PPI
MS.gene44892	MS.gene40982	PPI
MS.gene40982	MS.gene024000	PPI
MS.gene40982	MS.gene034688	PPI
MS.gene58239	MS.gene40982	PPI
MS.gene40982	MS.gene24213	PPI
MS.gene000038	MS.gene40982	PPI
MS.gene40982	MS.gene033079	PPI
MS.gene57531	MS.gene40982	PPI
MS.gene064111	MS.gene40982	PPI
MS.gene40982	MS.gene034677	PPI
MS.gene40982	MS.gene055694	PPI
MS.gene40982	MS.gene059101	PPI
MS.gene40982	MS.gene035238	PPI
MS.gene26829	MS.gene40982	PPI
MS.gene39262	MS.gene40982	PPI
MS.gene053256	MS.gene40982	PPI
MS.gene40982	MS.gene064114	PPI
MS.gene75875	MS.gene40982	PPI
MS.gene40982	MS.gene87584	PPI
MS.gene041470	MS.gene40982	PPI
MS.gene058694	MS.gene40982	PPI
MS.gene54049	MS.gene40982	PPI
MS.gene40982	MS.gene58315	PPI
MS.gene40982	MS.gene80610	PPI
MS.gene015089	MS.gene40982	PPI
MS.gene006710	MS.gene40982	PPI
MS.gene40982	MS.gene90743	PPI
MS.gene58722	MS.gene40982	PPI
MS.gene40982	MS.gene85454	PPI
MS.gene64001	MS.gene40982	PPI
MS.gene40982	MS.gene064112	PPI
MS.gene57533	MS.gene40982	PPI
MS.gene40982	MS.gene033443	PPI
MS.gene36704	MS.gene40982	PPI
MS.gene40982	MS.gene060367	PPI
MS.gene032970	MS.gene40982	PPI
MS.gene40982	MS.gene57536	PPI
MS.gene77856	MS.gene40982	PPI
MS.gene40982	MS.gene51200	PPI
MS.gene58313	MS.gene40982	PPI
MS.gene40982	MS.gene058701	PPI
MS.gene066622	MS.gene40982	PPI
MS.gene44887	MS.gene40982	PPI
MS.gene40982	MS.gene064083	PPI
MS.gene63655	MS.gene40982	PPI
MS.gene44883	MS.gene40982	PPI
MS.gene40982	MS.gene048193	PPI
MS.gene40982	MS.gene58783	PPI
MS.gene40982	MS.gene024420	PPI
MS.gene40982	MS.gene024008	PPI
MS.gene40982	MS.gene50337	PPI
MS.gene87588	MS.gene40982	PPI
MS.gene017412	MS.gene40982	PPI
MS.gene40982	MS.gene54541	PPI
MS.gene40982	MS.gene39265	PPI
MS.gene80884	MS.gene40982	PPI
MS.gene40982	MS.gene060368	PPI
MS.gene40982	MS.gene053299	PPI
MS.gene51192	MS.gene40982	PPI
MS.gene40982	MS.gene28758	PPI
MS.gene40982	MS.gene044429	PPI
MS.gene009883	MS.gene40982	PPI
MS.gene40982	MS.gene42451	PPI
MS.gene044563	MS.gene40982	PPI
MS.gene069075	MS.gene40982	PPI
MS.gene033427	MS.gene40982	PPI
MS.gene40985	MS.gene40982	PPI
MS.gene041474	MS.gene40982	PPI
MS.gene27020	MS.gene40982	PPI
MS.gene40982	MS.gene033431	PPI
MS.gene041388	MS.gene40982	PPI
MS.gene062698	MS.gene40982	PPI
MS.gene96126	MS.gene40982	PPI
MS.gene51208	MS.gene40982	PPI
MS.gene40982	MS.gene58319	PPI
MS.gene40982	MS.gene034762	PPI
MS.gene40982	MS.gene59943	PPI
MS.gene016524	MS.gene40982	PPI
MS.gene50304	MS.gene40982	PPI
MS.gene045475	MS.gene40982	PPI
MS.gene88776	MS.gene40982	PPI
MS.gene40982	MS.gene035262	PPI
MS.gene90744	MS.gene40982	PPI
MS.gene51204	MS.gene40982	PPI
MS.gene036557	MS.gene40982	PPI
MS.gene041393	MS.gene40982	PPI
MS.gene50329	MS.gene40982	PPI
MS.gene40982	MS.gene028390	PPI
MS.gene40982	MS.gene40878	PPI
MS.gene40982	MS.gene44428	PPI
MS.gene40982	MS.gene96407	PPI
MS.gene57537	MS.gene40982	PPI
MS.gene40982	MS.gene035235	PPI
MS.gene40982	MS.gene058703	PPI
MS.gene059156	MS.gene40982	PPI
MS.gene84698	MS.gene40982	PPI
MS.gene40982	MS.gene012215	PPI
MS.gene066641	MS.gene40982	PPI
MS.gene82082	MS.gene40982	PPI
MS.gene40982	MS.gene50297	PPI
MS.gene40982	MS.gene22715	PPI
MS.gene41046	MS.gene40982	PPI
MS.gene40982	MS.gene58316	PPI
MS.gene57535	MS.gene40982	PPI
MS.gene40982	MS.gene033430	PPI
MS.gene025887	MS.gene40982	PPI
MS.gene40982	MS.gene58321	PPI
MS.gene40982	MS.gene87564	PPI
MS.gene87200	MS.gene40982	PPI
MS.gene40982	MS.gene36595	PPI
MS.gene40982	MS.gene024004	PPI
MS.gene40982	MS.gene045140	PPI
MS.gene40982	MS.gene061240	PPI
MS.gene40982	MS.gene041473	PPI
MS.gene44885	MS.gene40982	PPI
MS.gene011679	MS.gene40982	PPI
MS.gene40982	MS.gene50311	PPI
MS.gene060370	MS.gene40982	PPI
MS.gene066635	MS.gene40982	PPI
MS.gene40982	MS.gene058989	PPI
MS.gene40982	MS.gene036556	PPI
MS.gene40982	MS.gene57538	PPI
MS.gene40982	MS.gene041468	PPI
MS.gene010758	MS.gene40982	PPI
MS.gene40982	MS.gene058693	PPI
MS.gene40982	MS.gene27319	PPI
MS.gene87586	MS.gene40982	PPI
MS.gene40982	MS.gene041395	PPI
MS.gene40982	MS.gene42447	PPI
MS.gene40982	MS.gene51189	PPI
MS.gene51200	MS.gene40982	PPI
MS.gene40887	MS.gene40982	PPI
MS.gene50339	MS.gene40982	PPI
MS.gene40982	MS.gene046958	PPI
MS.gene40982	MS.gene24286	PPI
MS.gene40982	MS.gene044425	PPI
MS.gene060366	MS.gene40982	PPI
MS.gene40982	MS.gene40988	PPI
MS.gene57529	MS.gene40982	PPI
MS.gene40982	MS.gene24173	PPI
MS.gene40982	MS.gene036584	PPI
MS.gene40982	MS.gene036662	PPI
MS.gene063414	MS.gene40982	PPI
MS.gene40902	MS.gene40982	PPI
MS.gene40982	MS.gene035261	PPI
MS.gene40982	MS.gene023999	PPI
MS.gene40982	MS.gene69307	PPI
MS.gene021553	MS.gene40982	PPI
MS.gene26957	MS.gene40982	PPI
MS.gene033875	MS.gene40982	PPI
MS.gene036582	MS.gene40982	PPI
MS.gene27021	MS.gene40982	PPI
MS.gene066620	MS.gene40982	PPI
MS.gene035236	MS.gene40982	PPI
MS.gene58320	MS.gene40982	PPI
MS.gene40982	MS.gene036581	PPI
MS.gene40982	MS.gene019507	PPI
MS.gene40982	MS.gene000036	PPI
MS.gene58781	MS.gene40982	PPI
MS.gene011106	MS.gene40982	PPI
MS.gene40982	MS.gene50320	PPI
MS.gene62398	MS.gene40982	PPI
MS.gene40982	MS.gene58314	PPI
MS.gene60027	MS.gene40982	PPI
MS.gene40982	MS.gene87557	PPI
MS.gene44886	MS.gene40982	PPI
MS.gene40982	MS.gene51199	PPI
MS.gene40982	MS.gene035263	PPI
MS.gene038756	MS.gene40982	PPI
MS.gene40982	MS.gene67501	PPI
MS.gene40982	MS.gene96406	PPI
MS.gene40904	MS.gene40982	PPI
MS.gene40982	MS.gene27285	PPI
MS.gene40982	MS.gene053257	PPI
MS.gene35068	MS.gene40982	PPI
MS.gene041390	MS.gene40982	PPI
MS.gene40982	MS.gene77858	PPI
MS.gene92376	MS.gene40982	PPI
MS.gene40982	MS.gene51201	PPI
MS.gene000035	MS.gene40982	PPI
MS.gene87569	MS.gene40982	PPI
MS.gene40982	MS.gene50336	PPI
MS.gene31637	MS.gene40982	PPI
MS.gene87573	MS.gene40982	PPI
MS.gene40982	MS.gene77704	PPI
MS.gene019504	MS.gene40982	PPI
MS.gene50297	MS.gene40982	PPI
MS.gene40982	MS.gene047279	PPI
MS.gene40982	MS.gene060370	PPI
MS.gene40982	MS.gene50305	PPI
MS.gene40982	MS.gene024002	PPI
MS.gene40982	MS.gene032969	PPI
MS.gene58716	MS.gene40982	PPI
MS.gene40982	MS.gene68890	PPI
MS.gene033444	MS.gene40982	PPI
MS.gene019505	MS.gene40982	PPI
MS.gene50306	MS.gene40982	PPI
MS.gene58785	MS.gene40982	PPI
MS.gene40982	MS.gene42445	PPI
MS.gene40982	MS.gene86273	PPI
MS.gene40982	MS.gene26830	PPI
MS.gene40982	MS.gene40985	PPI
MS.gene066639	MS.gene40982	PPI
MS.gene26949	MS.gene40982	PPI
MS.gene40982	MS.gene038756	PPI
MS.gene40982	MS.gene51207	PPI
MS.gene40982	MS.gene63657	PPI
MS.gene036760	MS.gene40982	PPI
MS.gene40982	MS.gene059157	PPI
MS.gene40982	MS.gene023996	PPI
MS.gene58311	MS.gene40982	PPI
MS.gene40982	MS.gene045473	PPI
MS.gene57527	MS.gene40982	PPI
MS.gene40982	MS.gene50301	PPI
MS.gene033432	MS.gene40982	PPI
MS.gene40982	MS.gene070462	PPI
MS.gene40982	MS.gene031590	PPI
MS.gene033426	MS.gene40982	PPI
MS.gene59639	MS.gene40982	PPI
MS.gene40982	MS.gene066623	PPI
MS.gene67687	MS.gene40982	PPI
MS.gene40982	MS.gene064086	PPI
MS.gene40982	MS.gene035234	PPI
MS.gene40982	MS.gene064090	PPI
MS.gene063670	MS.gene40982	PPI
MS.gene40982	MS.gene90742	PPI
MS.gene40982	MS.gene24212	PPI
MS.gene40982	MS.gene066639	PPI
MS.gene40982	MS.gene50332	PPI
MS.gene40982	MS.gene024979	PPI
MS.gene019506	MS.gene40982	PPI
MS.gene50326	MS.gene40982	PPI
MS.gene69309	MS.gene40982	PPI
MS.gene40982	MS.gene24826	PPI
MS.gene024002	MS.gene40982	PPI
MS.gene40982	MS.gene43790	PPI
MS.gene88774	MS.gene40982	PPI
MS.gene034686	MS.gene40982	PPI
MS.gene070461	MS.gene40982	PPI
MS.gene42452	MS.gene40982	PPI
MS.gene40982	MS.gene59637	PPI
MS.gene40982	MS.gene27022	PPI
MS.gene40982	MS.gene88416	PPI
MS.gene40982	MS.gene57530	PPI
MS.gene40982	MS.gene003076	PPI
MS.gene87563	MS.gene40982	PPI
MS.gene40982	MS.gene87585	PPI
MS.gene57526	MS.gene40982	PPI
MS.gene40982	MS.gene024009	PPI
MS.gene40982	MS.gene036599	PPI
MS.gene40982	MS.gene40887	PPI
MS.gene051820	MS.gene40982	PPI
MS.gene97996	MS.gene40982	PPI
MS.gene40982	MS.gene006705	PPI
MS.gene40982	MS.gene061241	PPI
MS.gene81242	MS.gene40982	PPI
MS.gene26101	MS.gene40982	PPI
MS.gene27283	MS.gene40982	PPI
MS.gene40982	MS.gene035237	PPI
MS.gene64203	MS.gene40982	PPI
MS.gene40982	MS.gene51188	PPI
MS.gene40982	MS.gene033875	PPI
MS.gene42444	MS.gene40982	PPI
MS.gene40982	MS.gene38220	PPI
MS.gene40982	MS.gene50309	PPI
MS.gene51202	MS.gene40982	PPI
MS.gene40982	MS.gene041394	PPI
MS.gene87562	MS.gene40982	PPI
MS.gene40982	MS.gene03060	PPI
MS.gene40982	MS.gene033440	PPI
MS.gene40982	MS.gene036664	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40982.t1	MTR_1g055175	77.301	163	35	1	1	163	41	201	5.85e-88	256
MS.gene40982.t1	MTR_1g055165	77.301	163	35	1	1	163	158	318	5.48e-87	257
MS.gene40982.t1	MTR_1g055135	73.939	165	40	2	1	163	212	375	6.69e-78	236
MS.gene40982.t1	MTR_1g055195	64.417	163	55	3	1	163	319	478	2.12e-61	197
MS.gene40982.t1	MTR_5g097210	66.456	158	49	3	2	159	206	359	3.24e-61	193
MS.gene40982.t1	MTR_1g055250	66.423	137	42	3	1	137	111	243	2.73e-55	177
MS.gene40982.t1	MTR_4g117720	58.580	169	60	7	2	163	213	378	2.65e-52	171
MS.gene40982.t1	MTR_6g060650	56.442	163	66	4	1	162	214	372	6.53e-52	169
MS.gene40982.t1	MTR_4g109280	57.669	163	61	6	4	163	202	359	8.94e-50	164
MS.gene40982.t1	MTR_4g118370	55.000	160	50	5	1	160	120	257	9.89e-47	153
MS.gene40982.t1	MTR_4g117750	56.707	164	63	4	1	159	195	355	1.48e-46	158
MS.gene40982.t1	MTR_4g117750	48.182	110	54	3	54	161	373	481	8.24e-23	94.0
MS.gene40982.t1	MTR_3g103020	56.173	162	64	5	5	163	221	378	8.19e-46	154
MS.gene40982.t1	MTR_4g116330	52.381	168	71	6	1	163	217	380	8.27e-46	154
MS.gene40982.t1	MTR_4g094365	52.147	163	74	3	2	162	203	363	1.11e-44	150
MS.gene40982.t1	MTR_4g122850	50.932	161	74	4	5	163	207	364	3.01e-43	147
MS.gene40982.t1	MTR_4g116320	52.439	164	67	5	2	160	98	255	5.27e-43	143
MS.gene40982.t1	MTR_3g034180	51.852	162	72	5	2	162	332	488	9.01e-43	148
MS.gene40982.t1	MTR_6g463430	52.201	159	69	4	6	163	50	202	2.35e-42	140
MS.gene40982.t1	MTR_4g118380	56.338	142	51	4	1	133	216	355	1.48e-41	142
MS.gene40982.t1	MTR_5g070080	52.976	168	66	7	2	163	226	386	1.55e-41	143
MS.gene40982.t1	MTR_5g070088	51.572	159	73	4	1	157	223	379	6.55e-41	141
MS.gene40982.t1	MTR_4g117850	52.201	159	67	5	4	156	218	373	1.09e-40	140
MS.gene40982.t1	MTR_8g040935	52.096	167	67	7	5	163	47	208	1.21e-40	135
MS.gene40982.t1	MTR_4g109270	51.553	161	71	5	6	163	208	364	2.23e-40	139
MS.gene40982.t1	MTR_8g433030	53.503	157	65	6	4	157	185	336	2.22e-39	136
MS.gene40982.t1	MTR_8g032390	53.503	157	65	6	4	157	218	369	5.89e-39	135
MS.gene40982.t1	MTR_4g023130	50.311	161	70	6	5	162	159	312	2.50e-38	133
MS.gene40982.t1	MTR_5g070130	52.258	155	68	5	6	157	219	370	2.72e-38	134
MS.gene40982.t1	MTR_4g023080	50.311	161	70	6	5	162	200	353	4.20e-38	133
MS.gene40982.t1	MTR_4g023070	48.837	172	70	6	5	162	202	369	1.97e-37	132
MS.gene40982.t1	MTR_3g034160	51.235	162	73	4	2	162	218	374	3.21e-37	131
MS.gene40982.t1	MTR_4g021785	48.447	161	75	5	5	163	201	355	6.59e-37	130
MS.gene40982.t1	MTR_3g034130	48.993	149	71	4	2	149	218	362	4.37e-36	128
MS.gene40982.t1	MTR_4g023380	43.784	185	73	7	5	163	200	379	5.62e-36	128
MS.gene40982.t1	MTR_8g433040	51.408	142	63	3	23	163	228	364	9.32e-36	127
MS.gene40982.t1	MTR_8g032380	51.408	142	63	3	23	163	228	364	9.32e-36	127
MS.gene40982.t1	MTR_4g118400	49.686	159	61	6	1	157	153	294	1.12e-35	125
MS.gene40982.t1	MTR_4g118360	50.781	128	60	3	37	163	1	126	4.40e-35	119
MS.gene40982.t1	MTR_4g023090	44.571	175	76	7	5	162	215	385	5.55e-35	125
MS.gene40982.t1	MTR_7g079400	45.679	162	82	3	6	163	178	337	1.39e-34	124
MS.gene40982.t1	MTR_4g117780	45.732	164	85	4	2	162	204	366	3.96e-34	123
MS.gene40982.t1	MTR_4g117770	46.341	164	84	4	2	162	204	366	7.51e-34	122
MS.gene40982.t1	MTR_4g117810	46.341	164	84	4	2	162	204	366	7.51e-34	122
MS.gene40982.t1	MTR_4g023120	45.455	176	72	6	5	163	202	370	1.75e-33	121
MS.gene40982.t1	MTR_4g023150	47.239	163	75	6	5	161	201	358	1.99e-33	121
MS.gene40982.t1	MTR_7g079420	45.000	160	83	4	6	163	988	1144	2.35e-33	124
MS.gene40982.t1	MTR_4g023190	47.853	163	74	6	5	161	200	357	5.25e-33	120
MS.gene40982.t1	MTR_4g023200	46.012	163	77	6	5	161	201	358	2.27e-32	118
MS.gene40982.t1	MTR_4g117870	47.692	130	65	2	34	163	141	267	1.32e-30	112
MS.gene40982.t1	MTR_8g102520	40.741	162	94	2	2	163	163	322	2.91e-30	112
MS.gene40982.t1	MTR_4g117530	41.875	160	57	4	5	163	129	253	7.22e-30	109
MS.gene40982.t1	MTR_7g079370	43.871	155	80	5	6	158	202	351	1.75e-28	108
MS.gene40982.t1	MTR_5g023000	56.250	96	34	5	72	163	8	99	1.48e-24	91.7
MS.gene40982.t1	MTR_7g079450	40.426	141	78	3	23	163	3	137	2.69e-24	92.0
MS.gene40982.t1	MTR_4g116330	39.286	168	54	6	1	163	217	341	2.94e-23	94.0
MS.gene40982.t1	MTR_2g048580	35.976	164	91	6	2	163	191	342	5.81e-23	93.2
MS.gene40982.t1	MTR_4g122860	38.095	168	69	6	1	162	181	319	9.88e-23	92.4
MS.gene40982.t1	MTR_4g023440	38.125	160	55	5	5	162	214	331	1.25e-22	92.0
MS.gene40982.t1	MTR_1g055145	62.338	77	26	1	3	79	129	202	4.33e-22	89.7
MS.gene40982.t1	MTR_8g098830	37.692	130	78	3	2	131	68	194	6.23e-17	75.1
MS.gene40982.t1	MTR_7g117720	41.905	105	49	4	62	158	172	272	6.95e-15	70.5
MS.gene40982.t1	MTR_4g121580	40.157	127	44	6	5	129	222	318	9.57e-15	70.9
MS.gene40982.t1	MTR_8g013005	55.000	60	26	1	104	163	1	59	1.45e-13	62.4
MS.gene40982.t1	MTR_4g114700	43.182	88	47	2	70	154	131	218	1.93e-13	65.9
MS.gene40982.t1	MTR_8g013010	58.065	62	20	1	2	63	254	309	2.84e-13	66.2
MS.gene40982.t1	MTR_4g023100	43.056	72	37	2	92	162	50	118	9.71e-13	61.6
MS.gene40982.t1	MTR_4g117430	55.932	59	24	1	5	63	96	152	1.98e-12	61.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 36 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATTGTTGCCTTTCATTTAA+TGG	0.113478	1.3:+40623648	MS.gene40982:CDS
GTTTCAAAGATTGTAATTTA+TGG	0.151549	1.3:+40623722	MS.gene40982:CDS
TTTCTCAGTCTATGGGTTTC+GGG	0.238313	1.3:+40623757	MS.gene40982:CDS
TTAGAGGATTTCTCAGTCTA+TGG	0.277856	1.3:+40623749	MS.gene40982:CDS
ACAAGGGTAAAGTTGATATA+TGG	0.287530	1.3:+40623782	MS.gene40982:CDS
ATTTCTCAGTCTATGGGTTT+CGG	0.288923	1.3:+40623756	MS.gene40982:CDS
TTTCAAAGATTGTAATTTAT+GGG	0.304574	1.3:+40623723	MS.gene40982:CDS
TATTCAAAATCATCATCATT+TGG	0.309421	1.3:-40623697	None:intergenic
ATTCAAAATCATCATCATTT+GGG	0.373726	1.3:-40623696	None:intergenic
TGTAATTTATGGGTATTTAG+AGG	0.380678	1.3:+40623733	MS.gene40982:CDS
TCTTCAATGGGGCTATTCAC+TGG	0.419380	1.3:+40623593	MS.gene40982:CDS
CAAGGGTAAAGTTGATATAT+GGG	0.420388	1.3:+40623783	MS.gene40982:CDS
AATACAAAGTGCAGTCATCT+TGG	0.424763	1.3:+40623815	MS.gene40982:CDS
TGGTAGAGTCAGTCTTCAAT+GGG	0.445013	1.3:+40623581	MS.gene40982:CDS
ATGGTAGAGTCAGTCTTCAA+TGG	0.450181	1.3:+40623580	MS.gene40982:CDS
CAATGGGGCTATTCACTGGT+TGG	0.483990	1.3:+40623597	MS.gene40982:CDS
TTGCCTTTCATTTAATGGAA+AGG	0.488920	1.3:+40623653	MS.gene40982:CDS
TAGAGGATTTCTCAGTCTAT+GGG	0.489737	1.3:+40623750	MS.gene40982:CDS
TTCTCAGTCTATGGGTTTCG+GGG	0.502147	1.3:+40623758	MS.gene40982:CDS
TAAGCTTCCTCATTGTCACT+AGG	0.504127	1.3:-40624048	None:intergenic
TATCCTTTCCATTAAATGAA+AGG	0.507802	1.3:-40623656	None:intergenic
GTTGGAACAGATTACCGTAC+TGG	0.514745	1.3:+40623916	MS.gene40982:CDS
TACAAGGGCAACGTTATGAA+TGG	0.537235	1.3:-40623869	None:intergenic
AAATCATCATCATTTGGGAG+AGG	0.551980	1.3:-40623691	None:intergenic
AAGCTTCCTCATTGTCACTA+GGG	0.552135	1.3:-40624047	None:intergenic
TTCACGAAATGAATTCCGAT+TGG	0.558524	1.3:+40623996	MS.gene40982:CDS
GAACAGATTACCGTACTGGA+TGG	0.571251	1.3:+40623920	MS.gene40982:CDS
ACTCTGTATACATAGCCAAT+CGG	0.573189	1.3:-40624011	None:intergenic
CATATCTCACCCATCCAGTA+CGG	0.584321	1.3:-40623930	None:intergenic
AACAGATTACCGTACTGGAT+GGG	0.623237	1.3:+40623921	MS.gene40982:CDS
TTCACTCCCTAGTGACAATG+AGG	0.626833	1.3:+40624041	MS.gene40982:CDS
TCTCAGTCTATGGGTTTCGG+GGG	0.637073	1.3:+40623759	MS.gene40982:CDS
GCTATTCGTCACGATAGACG+TGG	0.699166	1.3:+40623619	MS.gene40982:CDS
CTATTCGTCACGATAGACGT+GGG	0.735650	1.3:+40623620	MS.gene40982:CDS
TGGGTGAGATATGATGACAA+AGG	0.747254	1.3:+40623940	MS.gene40982:CDS
GGTAGAGTCAGTCTTCAATG+GGG	0.775884	1.3:+40623582	MS.gene40982:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTCAAAGATTGTAATTTAT+GGG	+	chr1.3:40623723-40623742	MS.gene40982:CDS	15.0%
!!	ATTCAAAATCATCATCATTT+GGG	-	chr1.3:40623699-40623718	None:intergenic	20.0%
!!	GTTTCAAAGATTGTAATTTA+TGG	+	chr1.3:40623722-40623741	MS.gene40982:CDS	20.0%
!!	TATTCAAAATCATCATCATT+TGG	-	chr1.3:40623700-40623719	None:intergenic	20.0%
!	TATCCTTTCCATTAAATGAA+AGG	-	chr1.3:40623659-40623678	None:intergenic	25.0%
!	TATTGTTGCCTTTCATTTAA+TGG	+	chr1.3:40623648-40623667	MS.gene40982:CDS	25.0%
!	TGTAATTTATGGGTATTTAG+AGG	+	chr1.3:40623733-40623752	MS.gene40982:CDS	25.0%
	ACAAAAAGTGGTGATATTGT+TGG	+	chr1.3:40623898-40623917	MS.gene40982:CDS	30.0%
	TTGCCTTTCATTTAATGGAA+AGG	+	chr1.3:40623653-40623672	MS.gene40982:CDS	30.0%
!	ACTTTTTGTGCAACATACAA+GGG	-	chr1.3:40623887-40623906	None:intergenic	30.0%
!!	ACAAGGGTAAAGTTGATATA+TGG	+	chr1.3:40623782-40623801	MS.gene40982:CDS	30.0%
!!	CAAGGGTAAAGTTGATATAT+GGG	+	chr1.3:40623783-40623802	MS.gene40982:CDS	30.0%
	AAATCATCATCATTTGGGAG+AGG	-	chr1.3:40623694-40623713	None:intergenic	35.0%
	AATACAAAGTGCAGTCATCT+TGG	+	chr1.3:40623815-40623834	MS.gene40982:CDS	35.0%
	ACTCTGTATACATAGCCAAT+CGG	-	chr1.3:40624014-40624033	None:intergenic	35.0%
	ATTTCTCAGTCTATGGGTTT+CGG	+	chr1.3:40623756-40623775	MS.gene40982:CDS	35.0%
	CTTGTATGTTGCACAAAAAG+TGG	+	chr1.3:40623886-40623905	MS.gene40982:CDS	35.0%
	TAGAGGATTTCTCAGTCTAT+GGG	+	chr1.3:40623750-40623769	MS.gene40982:CDS	35.0%
	TTAGAGGATTTCTCAGTCTA+TGG	+	chr1.3:40623749-40623768	MS.gene40982:CDS	35.0%
	TTCACGAAATGAATTCCGAT+TGG	+	chr1.3:40623996-40624015	MS.gene40982:CDS	35.0%
!!	CACTTTTTGTGCAACATACA+AGG	-	chr1.3:40623888-40623907	None:intergenic	35.0%
	AACAGATTACCGTACTGGAT+GGG	+	chr1.3:40623921-40623940	MS.gene40982:CDS	40.0%
	AAGCTTCCTCATTGTCACTA+GGG	-	chr1.3:40624050-40624069	None:intergenic	40.0%
	ATGGTAGAGTCAGTCTTCAA+TGG	+	chr1.3:40623580-40623599	MS.gene40982:CDS	40.0%
	TAAGCTTCCTCATTGTCACT+AGG	-	chr1.3:40624051-40624070	None:intergenic	40.0%
	TACAAGGGCAACGTTATGAA+TGG	-	chr1.3:40623872-40623891	None:intergenic	40.0%
	TGGGTGAGATATGATGACAA+AGG	+	chr1.3:40623940-40623959	MS.gene40982:CDS	40.0%
	TGGTAGAGTCAGTCTTCAAT+GGG	+	chr1.3:40623581-40623600	MS.gene40982:CDS	40.0%
	TTTCTCAGTCTATGGGTTTC+GGG	+	chr1.3:40623757-40623776	MS.gene40982:CDS	40.0%
	CATATCTCACCCATCCAGTA+CGG	-	chr1.3:40623933-40623952	None:intergenic	45.0%
	CTATTCGTCACGATAGACGT+GGG	+	chr1.3:40623620-40623639	MS.gene40982:CDS	45.0%
	GAACAGATTACCGTACTGGA+TGG	+	chr1.3:40623920-40623939	MS.gene40982:CDS	45.0%
	GGTAGAGTCAGTCTTCAATG+GGG	+	chr1.3:40623582-40623601	MS.gene40982:CDS	45.0%
	GTTGGAACAGATTACCGTAC+TGG	+	chr1.3:40623916-40623935	MS.gene40982:CDS	45.0%
	TCTTCAATGGGGCTATTCAC+TGG	+	chr1.3:40623593-40623612	MS.gene40982:CDS	45.0%
	TTCACTCCCTAGTGACAATG+AGG	+	chr1.3:40624041-40624060	MS.gene40982:CDS	45.0%
	TTCTCAGTCTATGGGTTTCG+GGG	+	chr1.3:40623758-40623777	MS.gene40982:CDS	45.0%
	CAATGGGGCTATTCACTGGT+TGG	+	chr1.3:40623597-40623616	MS.gene40982:CDS	50.0%
	GCTATTCGTCACGATAGACG+TGG	+	chr1.3:40623619-40623638	MS.gene40982:CDS	50.0%
	TCTCAGTCTATGGGTTTCGG+GGG	+	chr1.3:40623759-40623778	MS.gene40982:CDS	50.0%
	CTATGGGTTTCGGGGGACAA+GGG	+	chr1.3:40623766-40623785	MS.gene40982:CDS	55.0%
	TCTATGGGTTTCGGGGGACA+AGG	+	chr1.3:40623765-40623784	MS.gene40982:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	40623580	40624071	40623580	ID=MS.gene40982
chr1.3	mRNA	40623580	40624071	40623580	ID=MS.gene40982.t1;Parent=MS.gene40982
chr1.3	exon	40623580	40624071	40623580	ID=MS.gene40982.t1.exon1;Parent=MS.gene40982.t1
chr1.3	CDS	40623580	40624071	40623580	ID=cds.MS.gene40982.t1;Parent=MS.gene40982.t1

Gene Sequence

>MS.gene40982

ATGGTAGAGTCAGTCTTCAATGGGGCTATTCACTGGTTGGCTATTCGTCACGATAGACGTGGGTATGTTATTGTTGCCTTTCATTTAATGGAAAGGATACTTCTAGAAATTCCTCTCCCAAATGATGATGATTTTGAATATAGTTTCAAAGATTGTAATTTATGGGTATTTAGAGGATTTCTCAGTCTATGGGTTTCGGGGGACAAGGGTAAAGTTGATATATGGGTGATGAAAGAATACAAAGTGCAGTCATCTTGGACTAAAACTCTTGTTCTTACTACTTATGATACCATTCATAACGTTGCCCTTGTATGTTGCACAAAAAGTGGTGATATTGTTGGAACAGATTACCGTACTGGATGGGTGAGATATGATGACAAAGGAGAGTTTCTAGAGCATATCTACTATTGCATAGATTCACGAAATGAATTCCGATTGGCTATGTATACAGAGTCTTTGCTTTCACTCCCTAGTGACAATGAGGAAGCTTAA

Protein sequence

>MS.gene40982.t1

MVESVFNGAIHWLAIRHDRRGYVIVAFHLMERILLEIPLPNDDDFEYSFKDCNLWVFRGFLSLWVSGDKGKVDIWVMKEYKVQSSWTKTLVLTTYDTIHNVALVCCTKSGDIVGTDYRTGWVRYDDKGEFLEHIYYCIDSRNEFRLAMYTESLLSLPSDNEEA