AlfalfaGEDB | MS.gene31637

M. sativa cultivar XinJiangDaYe / MS.gene31637

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31637.t1	RHN76723.1	89.9	257	22	1	6	262	58	310	2.80E-131	478

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31637.t1	Q9SS35	25.1	267	156	15	9	259	141	379	8.2e-07	55.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31637.t1	A0A396JKA9	89.9	257	22	1	6	262	58	310	2.0e-131	478.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene42452	MS.gene31637	PPI
MS.gene063414	MS.gene31637	PPI
MS.gene31637	MS.gene48221	PPI
MS.gene31637	MS.gene51190	PPI
MS.gene57526	MS.gene31637	PPI
MS.gene31637	MS.gene58319	PPI
MS.gene31637	MS.gene034762	PPI
MS.gene31637	MS.gene71159	PPI
MS.gene31637	MS.gene59943	PPI
MS.gene31637	MS.gene044426	PPI
MS.gene021553	MS.gene31637	PPI
MS.gene051820	MS.gene31637	PPI
MS.gene26957	MS.gene31637	PPI
MS.gene97996	MS.gene31637	PPI
MS.gene036582	MS.gene31637	PPI
MS.gene27021	MS.gene31637	PPI
MS.gene31637	MS.gene033442	PPI
MS.gene58320	MS.gene31637	PPI
MS.gene26101	MS.gene31637	PPI
MS.gene27283	MS.gene31637	PPI
MS.gene58781	MS.gene31637	PPI
MS.gene31637	MS.gene44428	PPI
MS.gene31637	MS.gene066120	PPI
MS.gene011106	MS.gene31637	PPI
MS.gene44886	MS.gene31637	PPI
MS.gene31637	MS.gene035235	PPI
MS.gene31637	MS.gene058703	PPI
MS.gene40904	MS.gene31637	PPI
MS.gene31637	MS.gene57528	PPI
MS.gene92376	MS.gene31637	PPI
MS.gene31637	MS.gene024000	PPI
MS.gene31637	MS.gene012215	PPI
MS.gene000035	MS.gene31637	PPI
MS.gene87569	MS.gene31637	PPI
MS.gene87573	MS.gene31637	PPI
MS.gene041491	MS.gene31637	PPI
MS.gene31637	MS.gene033079	PPI
MS.gene31637	MS.gene055694	PPI
MS.gene31637	MS.gene059101	PPI
MS.gene019504	MS.gene31637	PPI
MS.gene31637	MS.gene58316	PPI
MS.gene059096	MS.gene31637	PPI
MS.gene57528	MS.gene31637	PPI
MS.gene31637	MS.gene033430	PPI
MS.gene31637	MS.gene58321	PPI
MS.gene006711	MS.gene31637	PPI
MS.gene31637	MS.gene87564	PPI
MS.gene31637	MS.gene58315	PPI
MS.gene58716	MS.gene31637	PPI
MS.gene033444	MS.gene31637	PPI
MS.gene019505	MS.gene31637	PPI
MS.gene045476	MS.gene31637	PPI
MS.gene58785	MS.gene31637	PPI
MS.gene034690	MS.gene31637	PPI
MS.gene26949	MS.gene31637	PPI
MS.gene31637	MS.gene041473	PPI
MS.gene31637	MS.gene50311	PPI
MS.gene036760	MS.gene31637	PPI
MS.gene31637	MS.gene064112	PPI
MS.gene31637	MS.gene058989	PPI
MS.gene31637	MS.gene036556	PPI
MS.gene58311	MS.gene31637	PPI
MS.gene31637	MS.gene57538	PPI
MS.gene57527	MS.gene31637	PPI
MS.gene51191	MS.gene31637	PPI
MS.gene31637	MS.gene060367	PPI
MS.gene31637	MS.gene058693	PPI
MS.gene31637	MS.gene27319	PPI
MS.gene31637	MS.gene015089	PPI
MS.gene31637	MS.gene041395	PPI
MS.gene033426	MS.gene31637	PPI
MS.gene31637	MS.gene51189	PPI
MS.gene50298	MS.gene31637	PPI
MS.gene67687	MS.gene31637	PPI
MS.gene31637	MS.gene046958	PPI
MS.gene31637	MS.gene24286	PPI
MS.gene063670	MS.gene31637	PPI
MS.gene31637	MS.gene58783	PPI
MS.gene019506	MS.gene31637	PPI
MS.gene31637	MS.gene40988	PPI
MS.gene058692	MS.gene31637	PPI
MS.gene31637	MS.gene24173	PPI
MS.gene31637	MS.gene036584	PPI
MS.gene31637	MS.gene036662	PPI
MS.gene69309	MS.gene31637	PPI
MS.gene63658	MS.gene31637	PPI
MS.gene033081	MS.gene31637	PPI
MS.gene31637	MS.gene42451	PPI
MS.gene31637	MS.gene50304	PPI
MS.gene31637	MS.gene035261	PPI
MS.gene034686	MS.gene31637	PPI
MS.gene31637	MS.gene023999	PPI
MS.gene070461	MS.gene31637	PPI
MS.gene31637	MS.gene69307	PPI
MS.gene31637	MS.gene036581	PPI
MS.gene31637	MS.gene019507	PPI
MS.gene31637	MS.gene033431	PPI
MS.gene87563	MS.gene31637	PPI
MS.gene31637	MS.gene50320	PPI
MS.gene31637	MS.gene58314	PPI
MS.gene31637	MS.gene87557	PPI
MS.gene041475	MS.gene31637	PPI
MS.gene31637	MS.gene51199	PPI
MS.gene31637	MS.gene035263	PPI
MS.gene31637	MS.gene67501	PPI
MS.gene31637	MS.gene96406	PPI
MS.gene31637	MS.gene27285	PPI
MS.gene81242	MS.gene31637	PPI
MS.gene31637	MS.gene035262	PPI
MS.gene64203	MS.gene31637	PPI
MS.gene31637	MS.gene028390	PPI
MS.gene31637	MS.gene40878	PPI
MS.gene42444	MS.gene31637	PPI
MS.gene31637	MS.gene96407	PPI
MS.gene51202	MS.gene31637	PPI
MS.gene87562	MS.gene31637	PPI
MS.gene31637	MS.gene047279	PPI
MS.gene31637	MS.gene060370	PPI
MS.gene31637	MS.gene50305	PPI
MS.gene31637	MS.gene024002	PPI
MS.gene31637	MS.gene032969	PPI
MS.gene26829	MS.gene31637	PPI
MS.gene064104	MS.gene31637	PPI
MS.gene31637	MS.gene68890	PPI
MS.gene31637	MS.gene50297	PPI
MS.gene31637	MS.gene42445	PPI
MS.gene31637	MS.gene86273	PPI
MS.gene31637	MS.gene26830	PPI
MS.gene54049	MS.gene31637	PPI
MS.gene31637	MS.gene40985	PPI
MS.gene31637	MS.gene22715	PPI
MS.gene43789	MS.gene31637	PPI
MS.gene31637	MS.gene038756	PPI
MS.gene31637	MS.gene51207	PPI
MS.gene31637	MS.gene63657	PPI
MS.gene31637	MS.gene059157	PPI
MS.gene072177	MS.gene31637	PPI
MS.gene31637	MS.gene36595	PPI
MS.gene58722	MS.gene31637	PPI
MS.gene064091	MS.gene31637	PPI
MS.gene31637	MS.gene024004	PPI
MS.gene31637	MS.gene045140	PPI
MS.gene31637	MS.gene070462	PPI
MS.gene31637	MS.gene061240	PPI
MS.gene50307	MS.gene31637	PPI
MS.gene31637	MS.gene54049	PPI
MS.gene43796	MS.gene31637	PPI
MS.gene58312	MS.gene31637	PPI
MS.gene36704	MS.gene31637	PPI
MS.gene31637	MS.gene064086	PPI
MS.gene31637	MS.gene035234	PPI
MS.gene31637	MS.gene041468	PPI
MS.gene58313	MS.gene31637	PPI
MS.gene31637	MS.gene066639	PPI
MS.gene066622	MS.gene31637	PPI
MS.gene31637	MS.gene50332	PPI
MS.gene44887	MS.gene31637	PPI
MS.gene31637	MS.gene42447	PPI
MS.gene31637	MS.gene024979	PPI
MS.gene31637	MS.gene64203	PPI
MS.gene036583	MS.gene31637	PPI
MS.gene88780	MS.gene31637	PPI
MS.gene31637	MS.gene24826	PPI
MS.gene31637	MS.gene044425	PPI
MS.gene87588	MS.gene31637	PPI
MS.gene31637	MS.gene032970	PPI
MS.gene71159	MS.gene31637	PPI
MS.gene96448	MS.gene31637	PPI
MS.gene041392	MS.gene31637	PPI
MS.gene31637	MS.gene59637	PPI
MS.gene069075	MS.gene31637	PPI
MS.gene31637	MS.gene27022	PPI
MS.gene031591	MS.gene31637	PPI
MS.gene31637	MS.gene87585	PPI
MS.gene31637	MS.gene024009	PPI
MS.gene31637	MS.gene036599	PPI
MS.gene31637	MS.gene40887	PPI
MS.gene31637	MS.gene42444	PPI
MS.gene041388	MS.gene31637	PPI
MS.gene31637	MS.gene006705	PPI
MS.gene96126	MS.gene31637	PPI
MS.gene019503	MS.gene31637	PPI
MS.gene016524	MS.gene31637	PPI
MS.gene31637	MS.gene035237	PPI
MS.gene87559	MS.gene31637	PPI
MS.gene50304	MS.gene31637	PPI
MS.gene31637	MS.gene000036	PPI
MS.gene31637	MS.gene50309	PPI
MS.gene31637	MS.gene041394	PPI
MS.gene31587	MS.gene31637	PPI
MS.gene041393	MS.gene31637	PPI
MS.gene033441	MS.gene31637	PPI
MS.gene31637	MS.gene036664	PPI
MS.gene31637	MS.gene053257	PPI
MS.gene31637	MS.gene58241	PPI
MS.gene31637	MS.gene77858	PPI
MS.gene31637	MS.gene51201	PPI
MS.gene31637	MS.gene058696	PPI
MS.gene063826	MS.gene31637	PPI
MS.gene31637	MS.gene009893	PPI
MS.gene31637	MS.gene045475	PPI
MS.gene31637	MS.gene50336	PPI
MS.gene31637	MS.gene57526	PPI
MS.gene44892	MS.gene31637	PPI
MS.gene31637	MS.gene77704	PPI
MS.gene58239	MS.gene31637	PPI
MS.gene066641	MS.gene31637	PPI
MS.gene000038	MS.gene31637	PPI
MS.gene57531	MS.gene31637	PPI
MS.gene064111	MS.gene31637	PPI
MS.gene31637	MS.gene033083	PPI
MS.gene39262	MS.gene31637	PPI
MS.gene053256	MS.gene31637	PPI
MS.gene025887	MS.gene31637	PPI
MS.gene75875	MS.gene31637	PPI
MS.gene31637	MS.gene033081	PPI
MS.gene041470	MS.gene31637	PPI
MS.gene31637	MS.gene036663	PPI
MS.gene058694	MS.gene31637	PPI
MS.gene31637	MS.gene68580	PPI
MS.gene31637	MS.gene57525	PPI
MS.gene015089	MS.gene31637	PPI
MS.gene006710	MS.gene31637	PPI
MS.gene31637	MS.gene023996	PPI
MS.gene31637	MS.gene030114	PPI
MS.gene31637	MS.gene045473	PPI
MS.gene011679	MS.gene31637	PPI
MS.gene31637	MS.gene50301	PPI
MS.gene31637	MS.gene88774	PPI
MS.gene31637	MS.gene045474	PPI
MS.gene64001	MS.gene31637	PPI
MS.gene31637	MS.gene031590	PPI
MS.gene31637	MS.gene036558	PPI
MS.gene57533	MS.gene31637	PPI
MS.gene77857	MS.gene31637	PPI
MS.gene31637	MS.gene40984	PPI
MS.gene032970	MS.gene31637	PPI
MS.gene31637	MS.gene066623	PPI
MS.gene31637	MS.gene064108	PPI
MS.gene31637	MS.gene064090	PPI
MS.gene77856	MS.gene31637	PPI
MS.gene31637	MS.gene24208	PPI
MS.gene31637	MS.gene58317	PPI
MS.gene31637	MS.gene90742	PPI
MS.gene31637	MS.gene24212	PPI
MS.gene63655	MS.gene31637	PPI
MS.gene44883	MS.gene31637	PPI
MS.gene060366	MS.gene31637	PPI
MS.gene31637	MS.gene58240	PPI
MS.gene41046	MS.gene31637	PPI
MS.gene31637	MS.gene063472	PPI
MS.gene017412	MS.gene31637	PPI
MS.gene31637	MS.gene43790	PPI
MS.gene57529	MS.gene31637	PPI
MS.gene31637	MS.gene57717	PPI
MS.gene31637	MS.gene034680	PPI
MS.gene31637	MS.gene27021	PPI
MS.gene80884	MS.gene31637	PPI
MS.gene31637	MS.gene044563	PPI
MS.gene31637	MS.gene50327	PPI
MS.gene31637	MS.gene066626	PPI
MS.gene31637	MS.gene40982	PPI
MS.gene009883	MS.gene31637	PPI
MS.gene40902	MS.gene31637	PPI
MS.gene31637	MS.gene063474	PPI
MS.gene033427	MS.gene31637	PPI
MS.gene31637	MS.gene88416	PPI
MS.gene31637	MS.gene57530	PPI
MS.gene31637	MS.gene034681	PPI
MS.gene041474	MS.gene31637	PPI
MS.gene31637	MS.gene57532	PPI
MS.gene31637	MS.gene003076	PPI
MS.gene27020	MS.gene31637	PPI
MS.gene066620	MS.gene31637	PPI
MS.gene035236	MS.gene31637	PPI
MS.gene31637	MS.gene009892	PPI
MS.gene51208	MS.gene31637	PPI
MS.gene31637	MS.gene061241	PPI
MS.gene31637	MS.gene058669	PPI
MS.gene31637	MS.gene51192	PPI
MS.gene62398	MS.gene31637	PPI
MS.gene60027	MS.gene31637	PPI
MS.gene31637	MS.gene51188	PPI
MS.gene31637	MS.gene033875	PPI
MS.gene045475	MS.gene31637	PPI
MS.gene88776	MS.gene31637	PPI
MS.gene31637	MS.gene041489	PPI
MS.gene31637	MS.gene38220	PPI
MS.gene31637	MS.gene40986	PPI
MS.gene35068	MS.gene31637	PPI
MS.gene041390	MS.gene31637	PPI
MS.gene90744	MS.gene31637	PPI
MS.gene51204	MS.gene31637	PPI
MS.gene31637	MS.gene36704	PPI
MS.gene31637	MS.gene034688	PPI
MS.gene036557	MS.gene31637	PPI
MS.gene50329	MS.gene31637	PPI
MS.gene31637	MS.gene03060	PPI
MS.gene31637	MS.gene24213	PPI
MS.gene31637	MS.gene033440	PPI
MS.gene31637	MS.gene024011	PPI
MS.gene31637	MS.gene034677	PPI
MS.gene31637	MS.gene064109	PPI
MS.gene57537	MS.gene31637	PPI
MS.gene31637	MS.gene035238	PPI
MS.gene059156	MS.gene31637	PPI
MS.gene31637	MS.gene85043	PPI
MS.gene84698	MS.gene31637	PPI
MS.gene31637	MS.gene064114	PPI
MS.gene31637	MS.gene87584	PPI
MS.gene31637	MS.gene062698	PPI
MS.gene82082	MS.gene31637	PPI
MS.gene31637	MS.gene80610	PPI
MS.gene50306	MS.gene31637	PPI
MS.gene31637	MS.gene90743	PPI
MS.gene57535	MS.gene31637	PPI
MS.gene31637	MS.gene40886	PPI
MS.gene31637	MS.gene85454	PPI
MS.gene87200	MS.gene31637	PPI
MS.gene31637	MS.gene041391	PPI
MS.gene31637	MS.gene033443	PPI
MS.gene033432	MS.gene31637	PPI
MS.gene31637	MS.gene57536	PPI
MS.gene31637	MS.gene51200	PPI
MS.gene59639	MS.gene31637	PPI
MS.gene44885	MS.gene31637	PPI
MS.gene31637	MS.gene021553	PPI
MS.gene066635	MS.gene31637	PPI
MS.gene31637	MS.gene44887	PPI
MS.gene31637	MS.gene058701	PPI
MS.gene31637	MS.gene87554	PPI
MS.gene31637	MS.gene009891	PPI
MS.gene31637	MS.gene064083	PPI
MS.gene31637	MS.gene27051	PPI
MS.gene010758	MS.gene31637	PPI
MS.gene31637	MS.gene048193	PPI
MS.gene87586	MS.gene31637	PPI
MS.gene31637	MS.gene024420	PPI
MS.gene31637	MS.gene016220	PPI
MS.gene31637	MS.gene57533	PPI
MS.gene31637	MS.gene024008	PPI
MS.gene31637	MS.gene50337	PPI
MS.gene50326	MS.gene31637	PPI
MS.gene31637	MS.gene063670	PPI
MS.gene31637	MS.gene54541	PPI
MS.gene31637	MS.gene39265	PPI
MS.gene31637	MS.gene041393	PPI
MS.gene50339	MS.gene31637	PPI
MS.gene31637	MS.gene060368	PPI
MS.gene31637	MS.gene053299	PPI
MS.gene31637	MS.gene28758	PPI
MS.gene31637	MS.gene044429	PPI
MS.gene31637	MS.gene57531	PPI
MS.gene31637	MS.gene27284	PPI
MS.gene31637	MS.gene019503	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31637.t1	MTR_1g008000	74.708	257	20	2	6	262	58	269	2.52e-129	367
MS.gene31637.t1	MTR_1g037540	43.333	270	123	15	8	261	145	400	2.41e-46	159
MS.gene31637.t1	MTR_1g023400	42.366	262	122	12	7	261	113	352	9.92e-42	146
MS.gene31637.t1	MTR_4g080200	40.000	260	136	11	7	261	105	349	5.79e-41	144
MS.gene31637.t1	MTR_1g022200	40.146	274	130	13	3	262	117	370	2.14e-38	138
MS.gene31637.t1	MTR_1g009110	38.060	268	143	13	2	262	128	379	2.00e-32	122
MS.gene31637.t1	MTR_1g023430	44.056	143	70	5	123	262	38	173	1.88e-24	96.7
MS.gene31637.t1	MTR_1g022105	44.068	118	55	7	80	195	168	276	4.23e-15	73.9
MS.gene31637.t1	MTR_7g090810	27.962	211	117	9	5	199	155	346	8.25e-13	68.2
MS.gene31637.t1	MTR_1g024125	40.336	119	61	6	130	244	38	150	1.10e-12	64.7
MS.gene31637.t1	MTR_7g090810	27.619	210	117	9	6	199	12	202	2.35e-12	66.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 58 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAAATTCTAATCTCATTAAT+TGG	0.178899	1.1:+11593323	None:intergenic
GAAGATGATGAAGCATTTAT+TGG	0.198974	1.1:-11593746	MS.gene31637:CDS
GGTGTTTATCATTGGCTTAT+AGG	0.230766	1.1:-11593509	MS.gene31637:CDS
CAATTAATGAGATTAGAATT+TGG	0.234969	1.1:-11593322	MS.gene31637:CDS
ATGTACAATACTCTTGTTAA+TGG	0.263447	1.1:-11593530	MS.gene31637:CDS
TTGTTAGATTACATTGAAAT+TGG	0.271300	1.1:+11593129	None:intergenic
AATTAATGAGATTAGAATTT+GGG	0.326552	1.1:-11593321	MS.gene31637:CDS
ATATCTTCATTAGATCTTGT+TGG	0.350920	1.1:+11593177	None:intergenic
GATGAAGCATTTATTGGTTT+CGG	0.366469	1.1:-11593740	MS.gene31637:CDS
CATGATATCGCGGAGATTAA+CGG	0.370428	1.1:-11593386	MS.gene31637:CDS
GACAATGTCATAAGAAGGTT+GGG	0.376207	1.1:+11593775	None:intergenic
TTGTTAATGGTGTTTATCAT+TGG	0.389185	1.1:-11593517	MS.gene31637:CDS
ACTTTGAATTCGTTGGTGTT+GGG	0.418527	1.1:+11593710	None:intergenic
AAATCGTGATCATCATGGTT+GGG	0.422524	1.1:+11593485	None:intergenic
GGTTAAAGATCAACAAGGTT+GGG	0.438242	1.1:-11593300	MS.gene31637:CDS
ATCGTCCTTTACATTGGTCT+CGG	0.439450	1.1:-11593670	MS.gene31637:CDS
GTTGGACCTCTCTAGTGGTT+GGG	0.443076	1.1:+11593804	None:intergenic
GACTTTGAATTCGTTGGTGT+TGG	0.447818	1.1:+11593709	None:intergenic
ATTGAACGCATTCTTTCAAA+GGG	0.454335	1.1:-11593233	MS.gene31637:CDS
ATAGTTTCTGAAGGAGGAAC+AGG	0.455791	1.1:+11593581	None:intergenic
TATTGAACGCATTCTTTCAA+AGG	0.464379	1.1:-11593234	MS.gene31637:CDS
CTTGTTGGAACATTCTATCA+AGG	0.472063	1.1:+11593192	None:intergenic
CGACAATGTCATAAGAAGGT+TGG	0.488384	1.1:+11593774	None:intergenic
TCTGAAGGAGGAACAGGTAA+AGG	0.489798	1.1:+11593587	None:intergenic
AGGAACAGGTAAAGGGATAA+TGG	0.497272	1.1:+11593595	None:intergenic
TGGAAAGGACTATATCGAAC+TGG	0.498828	1.1:+11593410	None:intergenic
GGGTTAAAGATCAACAAGGT+TGG	0.505393	1.1:-11593301	MS.gene31637:CDS
AAGAAGGTTGGGGAAGAAGT+TGG	0.507507	1.1:+11593786	None:intergenic
AGTTGGACCTCTCTAGTGGT+TGG	0.517562	1.1:+11593803	None:intergenic
ATAATCATAGCACTAAATCA+TGG	0.517780	1.1:-11593619	MS.gene31637:CDS
CTGAAGGAGGAACAGGTAAA+GGG	0.518344	1.1:+11593588	None:intergenic
ACGCATTCTTTCAAAGGGGA+AGG	0.532718	1.1:-11593228	MS.gene31637:CDS
GTAATCTAACAAGTGATATG+TGG	0.542533	1.1:-11593118	MS.gene31637:CDS
TGTTAAAATCGTGATCATCA+TGG	0.545146	1.1:+11593480	None:intergenic
AAAATCGTGATCATCATGGT+TGG	0.549224	1.1:+11593484	None:intergenic
ATTTCGATTAACATAAGCAA+GGG	0.557921	1.1:+11593361	None:intergenic
GTATCCATCGTCCTTTACAT+TGG	0.559670	1.1:-11593676	MS.gene31637:CDS
AATCGTGATCATCATGGTTG+GGG	0.560502	1.1:+11593486	None:intergenic
TTTGACGACTTTGAATTCGT+TGG	0.564086	1.1:+11593703	None:intergenic
TCTACGACAATGTCATAAGA+AGG	0.569668	1.1:+11593770	None:intergenic
TAATCTCCGCGATATCATGA+TGG	0.585641	1.1:+11593390	None:intergenic
GTGTCGTAATTACGTTGACA+AGG	0.594721	1.1:+11593067	None:intergenic
CTAGACCGAGACCAATGTAA+AGG	0.611930	1.1:+11593665	None:intergenic
AATTTCGATTAACATAAGCA+AGG	0.613905	1.1:+11593360	None:intergenic
TCCGCGATATCATGATGGAA+AGG	0.614688	1.1:+11593395	None:intergenic
TCAGAAACTATCATATATCA+CGG	0.615345	1.1:-11593569	MS.gene31637:CDS
GTGGAACCCAACCACTAGAG+AGG	0.618329	1.1:-11593810	MS.gene31637:CDS
AAGAAGTTGGACCTCTCTAG+TGG	0.621541	1.1:+11593799	None:intergenic
TCCTTTCCATCATGATATCG+CGG	0.629162	1.1:-11593396	MS.gene31637:CDS
TGTCGTAATTACGTTGACAA+GGG	0.635110	1.1:+11593068	None:intergenic
TGATATATGATAGTTTCTGA+AGG	0.639815	1.1:+11593572	None:intergenic
ACAATGTCATAAGAAGGTTG+GGG	0.640082	1.1:+11593776	None:intergenic
TATATGATAGTTTCTGAAGG+AGG	0.646456	1.1:+11593575	None:intergenic
GTAGTTGAAACTGATTCGTG+TGG	0.653741	1.1:+11593441	None:intergenic
GAGACCAATGTAAAGGACGA+TGG	0.665459	1.1:+11593672	None:intergenic
ATTTGGGTTAAAGATCAACA+AGG	0.669261	1.1:-11593305	MS.gene31637:CDS
GAATGCGTTCAATATCAAGA+CGG	0.697697	1.1:+11593243	None:intergenic
TTGAACGCATTCTTTCAAAG+GGG	0.725587	1.1:-11593232	MS.gene31637:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATTAATGAGATTAGAATTT+GGG	-	chr1.1:11593597-11593616	MS.gene31637:CDS	15.0%
!!	CAAATTCTAATCTCATTAAT+TGG	+	chr1.1:11593598-11593617	None:intergenic	20.0%
!!	CAATTAATGAGATTAGAATT+TGG	-	chr1.1:11593596-11593615	MS.gene31637:CDS	20.0%
!!	TTGTTAGATTACATTGAAAT+TGG	+	chr1.1:11593792-11593811	None:intergenic	20.0%
!	AATTTCGATTAACATAAGCA+AGG	+	chr1.1:11593561-11593580	None:intergenic	25.0%
!	ATAATCATAGCACTAAATCA+TGG	-	chr1.1:11593299-11593318	MS.gene31637:CDS	25.0%
!	ATATCTTCATTAGATCTTGT+TGG	+	chr1.1:11593744-11593763	None:intergenic	25.0%
!	ATGTACAATACTCTTGTTAA+TGG	-	chr1.1:11593388-11593407	MS.gene31637:CDS	25.0%
!	ATTTCGATTAACATAAGCAA+GGG	+	chr1.1:11593560-11593579	None:intergenic	25.0%
!	TCAGAAACTATCATATATCA+CGG	-	chr1.1:11593349-11593368	MS.gene31637:CDS	25.0%
!	TGATATATGATAGTTTCTGA+AGG	+	chr1.1:11593349-11593368	None:intergenic	25.0%
!	TTGTTAATGGTGTTTATCAT+TGG	-	chr1.1:11593401-11593420	MS.gene31637:CDS	25.0%
	ATTGAACGCATTCTTTCAAA+GGG	-	chr1.1:11593685-11593704	MS.gene31637:CDS	30.0%
	GTAATCTAACAAGTGATATG+TGG	-	chr1.1:11593800-11593819	MS.gene31637:CDS	30.0%
	TATTGAACGCATTCTTTCAA+AGG	-	chr1.1:11593684-11593703	MS.gene31637:CDS	30.0%
	TGTTAAAATCGTGATCATCA+TGG	+	chr1.1:11593441-11593460	None:intergenic	30.0%
!	ATTTGGGTTAAAGATCAACA+AGG	-	chr1.1:11593613-11593632	MS.gene31637:CDS	30.0%
!	GAAGATGATGAAGCATTTAT+TGG	-	chr1.1:11593172-11593191	MS.gene31637:CDS	30.0%
!	TATATGATAGTTTCTGAAGG+AGG	+	chr1.1:11593346-11593365	None:intergenic	30.0%
!	TTCAAGACGACTTAATTTTG+TGG	-	chr1.1:11593089-11593108	MS.gene31637:CDS	30.0%
!!	GATGAAGCATTTATTGGTTT+CGG	-	chr1.1:11593178-11593197	MS.gene31637:CDS	30.0%
	AAAATCGTGATCATCATGGT+TGG	+	chr1.1:11593437-11593456	None:intergenic	35.0%
	AAATCGTGATCATCATGGTT+GGG	+	chr1.1:11593436-11593455	None:intergenic	35.0%
	ACAATGTCATAAGAAGGTTG+GGG	+	chr1.1:11593145-11593164	None:intergenic	35.0%
	CTTGTTGGAACATTCTATCA+AGG	+	chr1.1:11593729-11593748	None:intergenic	35.0%
	GAATGCGTTCAATATCAAGA+CGG	+	chr1.1:11593678-11593697	None:intergenic	35.0%
	GACAATGTCATAAGAAGGTT+GGG	+	chr1.1:11593146-11593165	None:intergenic	35.0%
	GGTTAAAGATCAACAAGGTT+GGG	-	chr1.1:11593618-11593637	MS.gene31637:CDS	35.0%
	TCTACGACAATGTCATAAGA+AGG	+	chr1.1:11593151-11593170	None:intergenic	35.0%
	TTGAACGCATTCTTTCAAAG+GGG	-	chr1.1:11593686-11593705	MS.gene31637:CDS	35.0%
	TTTGACGACTTTGAATTCGT+TGG	+	chr1.1:11593218-11593237	None:intergenic	35.0%
!	ACTTTGAATTCGTTGGTGTT+GGG	+	chr1.1:11593211-11593230	None:intergenic	35.0%
!!	GGTGTTTATCATTGGCTTAT+AGG	-	chr1.1:11593409-11593428	MS.gene31637:CDS	35.0%
	AATCGTGATCATCATGGTTG+GGG	+	chr1.1:11593435-11593454	None:intergenic	40.0%
	AGGAACAGGTAAAGGGATAA+TGG	+	chr1.1:11593326-11593345	None:intergenic	40.0%
	CATGATATCGCGGAGATTAA+CGG	-	chr1.1:11593532-11593551	MS.gene31637:CDS	40.0%
	CGACAATGTCATAAGAAGGT+TGG	+	chr1.1:11593147-11593166	None:intergenic	40.0%
	GACTTTGAATTCGTTGGTGT+TGG	+	chr1.1:11593212-11593231	None:intergenic	40.0%
	GGGTTAAAGATCAACAAGGT+TGG	-	chr1.1:11593617-11593636	MS.gene31637:CDS	40.0%
	GTATCCATCGTCCTTTACAT+TGG	-	chr1.1:11593242-11593261	MS.gene31637:CDS	40.0%
	TAATCTCCGCGATATCATGA+TGG	+	chr1.1:11593531-11593550	None:intergenic	40.0%
	TCCTTTCCATCATGATATCG+CGG	-	chr1.1:11593522-11593541	MS.gene31637:CDS	40.0%
	TGGAAAGGACTATATCGAAC+TGG	+	chr1.1:11593511-11593530	None:intergenic	40.0%
!	ATAGTTTCTGAAGGAGGAAC+AGG	+	chr1.1:11593340-11593359	None:intergenic	40.0%
!	ATCGTCCTTTACATTGGTCT+CGG	-	chr1.1:11593248-11593267	MS.gene31637:CDS	40.0%
!!	GTAGTTGAAACTGATTCGTG+TGG	+	chr1.1:11593480-11593499	None:intergenic	40.0%
	AAGAAGGTTGGGGAAGAAGT+TGG	+	chr1.1:11593135-11593154	None:intergenic	45.0%
	AAGAAGTTGGACCTCTCTAG+TGG	+	chr1.1:11593122-11593141	None:intergenic	45.0%
	ACGCATTCTTTCAAAGGGGA+AGG	-	chr1.1:11593690-11593709	MS.gene31637:CDS	45.0%
	CTAGACCGAGACCAATGTAA+AGG	+	chr1.1:11593256-11593275	None:intergenic	45.0%
	CTGAAGGAGGAACAGGTAAA+GGG	+	chr1.1:11593333-11593352	None:intergenic	45.0%
	GAGACCAATGTAAAGGACGA+TGG	+	chr1.1:11593249-11593268	None:intergenic	45.0%
	TCTGAAGGAGGAACAGGTAA+AGG	+	chr1.1:11593334-11593353	None:intergenic	45.0%
!	TCCGCGATATCATGATGGAA+AGG	+	chr1.1:11593526-11593545	None:intergenic	45.0%
	AGTTGGACCTCTCTAGTGGT+TGG	+	chr1.1:11593118-11593137	None:intergenic	50.0%
	GTTGGACCTCTCTAGTGGTT+GGG	+	chr1.1:11593117-11593136	None:intergenic	50.0%
	GTGGAACCCAACCACTAGAG+AGG	-	chr1.1:11593108-11593127	MS.gene31637:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	11593076	11593864	11593076	ID=MS.gene31637
chr1.1	mRNA	11593076	11593864	11593076	ID=MS.gene31637.t1;Parent=MS.gene31637
chr1.1	exon	11593076	11593864	11593076	ID=MS.gene31637.t1.exon1;Parent=MS.gene31637.t1
chr1.1	CDS	11593076	11593864	11593076	ID=cds.MS.gene31637.t1;Parent=MS.gene31637.t1

Gene Sequence

>MS.gene31637

ATGGAGAATCAAATTCAAGACGACTTAATTTTGTGGAACCCAACCACTAGAGAGGTCCAACTTCTTCCCCAACCTTCTTATGACATTGTCGTAGATGAAGATGATGAAGCATTTATTGGTTTCGGTGCTGATCCCAACACCAACGAATTCAAAGTCGTCAAAGTCAGTATCCATCGTCCTTTACATTGGTCTCGGTCTAGTTCTTTTTCACTTGCTGAACTTTATAATCATAGCACTAAATCATGGACCATTATCCCTTTACCTGTTCCTCCTTCAGAAACTATCATATATCACGGTCATAGACGTTTTAACATGTACAATACTCTTGTTAATGGTGTTTATCATTGGCTTATAGGCCCCAACCATGATGATCACGATTTTAACATTCTCTGCTTTGACTTCCACACGAATCAGTTTCAACTACTCGAGTCTCCAGTTCGATATAGTCCTTTCCATCATGATATCGCGGAGATTAACGGTTCCCTTGCTTATGTTAATCGAAATTTTTATGCTTTTAATCCAATTAATGAGATTAGAATTTGGGTTAAAGATCAACAAGGTTGGGTCAAGAAATACAACATTAATATCTCACTTGATCGCCGTCTTGATATTGAACGCATTCTTTCAAAGGGGAAGGATGATGTTCAAGTCCTTGATAGAATGTTCCAACAAGATCTAATGAAGATATACGATAAAGATTGCAACTTGCTTCACCAATTTCAATGTAATCTAACAAGTGATATGTGGATTCATGAGTATGTGCAAAGTATAGTTCCCTTGTCAACGTAA

Protein sequence

>MS.gene31637.t1

MENQIQDDLILWNPTTREVQLLPQPSYDIVVDEDDEAFIGFGADPNTNEFKVVKVSIHRPLHWSRSSSFSLAELYNHSTKSWTIIPLPVPPSETIIYHGHRRFNMYNTLVNGVYHWLIGPNHDDHDFNILCFDFHTNQFQLLESPVRYSPFHHDIAEINGSLAYVNRNFYAFNPINEIRIWVKDQQGWVKKYNINISLDRRLDIERILSKGKDDVQVLDRMFQQDLMKIYDKDCNLLHQFQCNLTSDMWIHEYVQSIVPLST