AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57529

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57529.t1 MTR_8g032390 72.016 243 53 7 21 255 135 370 3.02e-108 317
MS.gene57529.t1 MTR_8g433040 68.952 248 52 6 21 260 134 364 1.05e-107 316
MS.gene57529.t1 MTR_8g032380 68.952 248 52 6 21 260 134 364 1.05e-107 316
MS.gene57529.t1 MTR_8g433030 72.477 218 47 6 46 255 125 337 4.91e-97 288
MS.gene57529.t1 MTR_3g103020 54.762 252 89 8 22 260 139 378 3.28e-79 244
MS.gene57529.t1 MTR_4g122850 56.917 253 87 10 21 260 121 364 2.50e-76 236
MS.gene57529.t1 MTR_6g060650 52.610 249 95 8 22 259 136 372 2.04e-75 234
MS.gene57529.t1 MTR_4g094365 54.839 248 95 8 21 260 126 364 1.63e-74 231
MS.gene57529.t1 MTR_4g117720 54.086 257 88 11 22 260 134 378 4.08e-73 228
MS.gene57529.t1 MTR_4g116330 52.778 252 90 9 22 260 145 380 2.67e-71 223
MS.gene57529.t1 MTR_4g118380 53.913 230 76 8 22 233 138 355 3.71e-69 217
MS.gene57529.t1 MTR_4g023130 51.837 245 94 9 21 259 86 312 1.12e-68 214
MS.gene57529.t1 MTR_4g109270 50.607 247 104 8 21 260 129 364 1.14e-68 216
MS.gene57529.t1 MTR_4g023070 49.042 261 95 8 23 259 123 369 1.92e-68 216
MS.gene57529.t1 MTR_4g021785 51.230 244 100 8 21 260 127 355 3.39e-68 214
MS.gene57529.t1 MTR_4g023080 51.020 245 96 9 21 259 127 353 1.20e-67 213
MS.gene57529.t1 MTR_4g023090 50.379 264 95 11 21 260 135 386 1.23e-67 214
MS.gene57529.t1 MTR_4g117850 50.400 250 97 8 22 257 140 376 4.51e-66 210
MS.gene57529.t1 MTR_4g023120 47.710 262 99 8 23 260 123 370 9.91e-66 209
MS.gene57529.t1 MTR_3g034180 48.462 260 99 10 22 260 244 489 3.87e-65 211
MS.gene57529.t1 MTR_4g109280 50.794 252 96 8 22 260 123 359 3.81e-63 202
MS.gene57529.t1 MTR_3g034160 50.000 258 96 9 22 259 130 374 1.20e-62 201
MS.gene57529.t1 MTR_4g023380 47.037 270 88 10 21 260 135 379 6.07e-62 199
MS.gene57529.t1 MTR_4g023190 48.790 248 99 10 21 258 128 357 5.81e-59 191
MS.gene57529.t1 MTR_4g117780 47.791 249 112 8 21 260 128 367 1.37e-58 190
MS.gene57529.t1 MTR_4g023200 47.984 248 102 10 21 258 128 358 1.66e-58 190
MS.gene57529.t1 MTR_4g116320 50.685 219 89 6 50 256 43 254 1.12e-57 184
MS.gene57529.t1 MTR_6g463430 54.359 195 79 6 69 260 15 202 1.65e-57 182
MS.gene57529.t1 MTR_4g023150 48.178 247 103 10 21 258 128 358 3.35e-57 186
MS.gene57529.t1 MTR_8g040935 50.495 202 82 5 70 260 14 208 1.35e-56 180
MS.gene57529.t1 MTR_3g034130 50.962 208 74 6 44 232 148 346 5.77e-56 184
MS.gene57529.t1 MTR_4g117770 47.390 249 113 8 21 260 128 367 1.98e-54 179
MS.gene57529.t1 MTR_4g117810 47.390 249 113 8 21 260 128 367 1.98e-54 179
MS.gene57529.t1 MTR_5g097210 47.390 249 102 9 22 257 128 360 2.70e-54 179
MS.gene57529.t1 MTR_1g055135 45.312 256 110 9 22 260 133 375 1.51e-52 175
MS.gene57529.t1 MTR_4g117870 43.600 250 83 8 21 260 66 267 1.71e-51 169
MS.gene57529.t1 MTR_4g117530 41.219 279 98 10 5 260 18 253 5.56e-51 167
MS.gene57529.t1 MTR_5g070130 45.525 257 112 10 22 260 131 377 8.25e-51 171
MS.gene57529.t1 MTR_1g055195 46.988 249 97 13 22 256 247 474 1.37e-50 172
MS.gene57529.t1 MTR_1g055175 47.573 206 82 6 68 259 7 200 8.65e-49 160
MS.gene57529.t1 MTR_4g121580 45.570 237 90 9 21 250 135 339 2.00e-48 164
MS.gene57529.t1 MTR_5g070080 43.825 251 117 10 22 260 148 386 2.82e-48 164
MS.gene57529.t1 MTR_4g118400 43.515 239 93 8 22 254 92 294 5.71e-48 161
MS.gene57529.t1 MTR_4g118370 43.825 251 91 10 22 257 42 257 1.82e-47 158
MS.gene57529.t1 MTR_7g079400 42.412 257 119 8 21 260 93 337 3.54e-47 160
MS.gene57529.t1 MTR_4g023440 42.205 263 91 8 7 260 122 332 5.03e-46 157
MS.gene57529.t1 MTR_4g116330 42.857 252 76 9 22 260 145 341 5.26e-46 157
MS.gene57529.t1 MTR_8g102520 41.270 252 123 8 22 260 83 322 7.84e-45 153
MS.gene57529.t1 MTR_7g079370 42.063 252 120 10 22 254 106 350 1.31e-44 154
MS.gene57529.t1 MTR_1g055250 40.876 274 125 11 5 260 16 270 2.33e-43 150
MS.gene57529.t1 MTR_5g070088 41.016 256 122 11 21 260 144 386 2.81e-41 145
MS.gene57529.t1 MTR_1g055165 50.932 161 68 4 106 260 163 318 2.17e-40 142
MS.gene57529.t1 MTR_4g117750 41.699 259 113 9 22 259 117 358 1.81e-39 143
MS.gene57529.t1 MTR_4g117750 55.856 111 41 3 154 258 373 481 7.44e-30 117
MS.gene57529.t1 MTR_4g117430 50.694 144 56 7 21 163 23 152 1.59e-34 122
MS.gene57529.t1 MTR_8g013010 50.685 146 57 5 22 163 175 309 1.45e-33 124
MS.gene57529.t1 MTR_4g118360 51.938 129 50 4 139 259 1 125 3.59e-31 112
MS.gene57529.t1 MTR_7g079420 35.200 250 119 9 22 260 927 1144 1.99e-30 120
MS.gene57529.t1 MTR_4g122860 38.000 200 72 7 76 260 158 320 1.87e-29 113
MS.gene57529.t1 MTR_8g098830 41.714 175 84 7 67 233 32 196 2.16e-29 110
MS.gene57529.t1 MTR_4g114700 36.214 243 84 10 23 250 31 217 2.86e-29 110
MS.gene57529.t1 MTR_5g023000 62.366 93 29 2 174 260 7 99 5.74e-29 105
MS.gene57529.t1 MTR_7g079450 44.056 143 69 4 123 260 1 137 1.71e-25 98.2
MS.gene57529.t1 MTR_4g116340 51.304 115 42 5 22 129 140 247 1.19e-23 96.3
MS.gene57529.t1 MTR_2g048580 32.456 228 131 9 39 260 132 342 1.25e-23 98.2
MS.gene57529.t1 MTR_6g034720 46.341 123 54 5 24 140 53 169 5.76e-23 93.6
MS.gene57529.t1 MTR_2g426020 28.295 258 153 10 22 256 134 382 5.51e-19 85.9
MS.gene57529.t1 MTR_2g028110 27.953 254 156 10 22 259 124 366 1.36e-17 81.6
MS.gene57529.t1 MTR_2g021050 27.039 233 135 10 31 239 116 337 2.81e-17 80.9
MS.gene57529.t1 MTR_1g068860 26.471 238 143 10 44 260 141 367 6.47e-17 79.7
MS.gene57529.t1 MTR_2g031720 29.661 236 136 10 44 256 141 369 7.09e-17 79.7
MS.gene57529.t1 MTR_7g117720 50.602 83 30 3 21 96 112 190 2.28e-15 74.3
MS.gene57529.t1 MTR_7g117720 50.000 88 32 4 179 255 186 272 1.58e-13 68.9
MS.gene57529.t1 MTR_1g094210 26.432 227 139 6 38 252 188 398 2.69e-15 75.1
MS.gene57529.t1 MTR_2g031680 26.872 227 136 8 45 251 139 355 2.72e-15 75.1
MS.gene57529.t1 MTR_2g425980 30.126 239 133 12 44 259 158 385 3.25e-15 75.1
MS.gene57529.t1 MTR_8g099460 26.549 226 135 7 44 251 153 365 3.44e-15 74.7
MS.gene57529.t1 MTR_1g097560 30.093 216 126 9 45 252 175 373 3.70e-15 74.7
MS.gene57529.t1 MTR_4g133170 26.295 251 153 11 22 251 115 354 4.11e-15 74.7
MS.gene57529.t1 MTR_1g068875 25.664 226 139 10 44 251 139 353 7.49e-15 73.9
MS.gene57529.t1 MTR_1g094210 26.601 203 122 5 38 229 188 374 2.06e-14 72.8
MS.gene57529.t1 MTR_4g023430 42.453 106 50 4 164 260 119 222 4.25e-14 69.7
MS.gene57529.t1 MTR_5g057790 28.846 208 111 7 43 233 188 375 6.24e-14 71.2
MS.gene57529.t1 MTR_2g025420 25.287 261 155 12 23 252 141 392 7.45e-14 70.9
MS.gene57529.t1 MTR_2g028160 26.437 261 154 12 22 254 140 390 8.19e-14 70.9
MS.gene57529.t1 MTR_2g024100 26.471 238 136 9 43 251 153 380 8.51e-13 67.8
MS.gene57529.t1 MTR_5g097350 26.087 253 141 11 22 253 156 383 9.06e-13 67.8
MS.gene57529.t1 MTR_2g024110 25.856 263 156 12 22 256 118 369 1.57e-12 67.0
MS.gene57529.t1 MTR_5g057710 28.302 212 108 9 43 233 188 376 2.17e-12 66.6
MS.gene57529.t1 MTR_3g083010 27.273 264 151 13 22 254 142 395 2.76e-12 66.2
MS.gene57529.t1 MTR_6g027910 28.017 232 123 11 44 252 164 374 3.48e-12 65.9
MS.gene57529.t1 MTR_2g078870 27.044 159 102 4 38 196 93 237 5.17e-12 65.1
MS.gene57529.t1 MTR_3g013740 29.183 257 129 14 23 252 176 406 6.41e-12 65.5
MS.gene57529.t1 MTR_2g426060 27.099 262 152 13 22 256 133 382 6.48e-12 65.1
MS.gene57529.t1 MTR_3g007410 28.070 228 129 10 44 253 193 403 7.67e-12 65.1
MS.gene57529.t1 MTR_5g056990 27.830 212 109 9 43 233 33 221 1.03e-11 63.5
MS.gene57529.t1 MTR_1g050542 24.359 234 152 6 34 252 181 404 1.16e-11 64.3
MS.gene57529.t1 MTR_5g097680 23.707 232 150 7 46 255 199 425 1.25e-11 64.3
MS.gene57529.t1 MTR_2g043410 27.755 245 130 11 47 252 180 416 4.01e-11 62.8
MS.gene57529.t1 MTR_3g007430 26.718 262 156 11 8 252 144 386 9.09e-11 61.6
MS.gene57529.t1 MTR_5g057020 28.846 208 124 9 15 218 147 334 9.86e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57529.t1 AT3G06240 28.936 235 154 5 23 252 193 419 1.30e-17 82.0

Find 56 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGTTGTCTTTGATTTAA+TGG 0.084690 8.3:-62049700 MS.gene57529:CDS
GGAATAGGAACTTTCATAAT+TGG 0.168463 8.3:-62049584 MS.gene57529:CDS
GATTATGGTTTGTGGGTATT+TGG 0.208731 8.3:-62049624 MS.gene57529:CDS
GGAAATCGACAGTTGAAATA+TGG 0.217300 8.3:-62049563 MS.gene57529:CDS
AAAGCAGGATTATTCTTTAA+TGG 0.228597 8.3:-62049774 MS.gene57529:CDS
CCACGTCATCTATATGGTTT+TGG 0.285724 8.3:-62049954 MS.gene57529:CDS
AAGCAGGATTATTCTTTAAT+GGG 0.287791 8.3:-62049773 MS.gene57529:CDS
TTGGAGAATTTCTCAGTCTA+TGG 0.288501 8.3:-62049605 MS.gene57529:CDS
TAATCCTGCTTTGGAAGCTT+TGG 0.296435 8.3:+62049785 None:intergenic
GACCATGATCCTGTGGATTA+TGG 0.306412 8.3:-62049639 MS.gene57529:CDS
GACCATCCACGTCATCTATA+TGG 0.352255 8.3:-62049960 MS.gene57529:CDS
AATCCTGCTTTGGAAGCTTT+GGG 0.358664 8.3:+62049786 None:intergenic
TCTTTAATGGGGATATTCAT+TGG 0.368049 8.3:-62049761 MS.gene57529:CDS
AATCAGAGACTCCGTATAAA+TGG 0.376180 8.3:+62049344 None:intergenic
ATTAAAGAATAATCCTGCTT+TGG 0.391144 8.3:+62049776 None:intergenic
ATCTGAAGTGGCCATTTATA+CGG 0.397013 8.3:-62049355 MS.gene57529:CDS
CCAAGTAATCATCTCTTAAT+CGG 0.422613 8.3:+62049925 None:intergenic
AATTTCTCAGTCTATGGAAT+AGG 0.433887 8.3:-62049599 MS.gene57529:CDS
GGATCATGGTCAAAATCATC+TGG 0.436812 8.3:+62049651 None:intergenic
CATCTTGTTAAACTTGTTCA+CGG 0.438416 8.3:+62049307 None:intergenic
TCCTGTGGATTATGGTTTGT+GGG 0.455259 8.3:-62049631 MS.gene57529:CDS
ATCCTGTGGATTATGGTTTG+TGG 0.458998 8.3:-62049632 MS.gene57529:CDS
GAAATCGACAGTTGAAATAT+GGG 0.469274 8.3:-62049562 MS.gene57529:CDS
TATCCCAAAGCTTCCAAAGC+AGG 0.472312 8.3:-62049789 MS.gene57529:CDS
CCGATTAAGAGATGATTACT+TGG 0.479528 8.3:-62049925 MS.gene57529:CDS
GCATGTACTTTGGCAGCAAA+AGG 0.483005 8.3:+62049990 None:intergenic
TAATGGGGATATTCATTGGT+TGG 0.487283 8.3:-62049757 MS.gene57529:CDS
CAGCAGGAAGATATAACATC+TGG 0.489889 8.3:+62050337 None:intergenic
ATGGCCACTTCAGATGCATT+CGG 0.499630 8.3:+62049363 None:intergenic
TAAACTTGTTCACGGTCACC+AGG 0.501824 8.3:+62049315 None:intergenic
AATACAAACAACATTCGTCT+TGG 0.503398 8.3:-62049530 MS.gene57529:CDS
AGTTGAAATATGGGTGATGA+AGG 0.512041 8.3:-62049553 MS.gene57529:CDS
TTGTCTTTGATTTAATGGAA+AGG 0.526787 8.3:-62049695 MS.gene57529:CDS
ATTTGAATGATTAATTCAGC+AGG 0.529964 8.3:+62050321 None:intergenic
AACCATAATCCACAGGATCA+TGG 0.536939 8.3:+62049637 None:intergenic
ATTAAGAGATGATTACTTGG+TGG 0.538629 8.3:-62049922 MS.gene57529:CDS
TCTCATTTAGAGATAATACA+TGG 0.548869 8.3:-62049857 MS.gene57529:CDS
AATACATGGAATGAAATTGA+AGG 0.550594 8.3:-62049843 MS.gene57529:CDS
ATATAATGAAGTGCATCCTA+AGG 0.555527 8.3:+62049890 None:intergenic
CATCACTTATTTGAATACAA+CGG 0.561563 8.3:-62049814 MS.gene57529:CDS
AGCAGGATTATTCTTTAATG+GGG 0.562885 8.3:-62049772 MS.gene57529:CDS
TGGTCAAAATCATCTGGAAG+AGG 0.566442 8.3:+62049657 None:intergenic
GGGGAAAAGAACATAATGCT+AGG 0.573016 8.3:+62049489 None:intergenic
GTCATCGTATGCATGTACTT+TGG 0.576356 8.3:+62049980 None:intergenic
AACTGACGGTGATCGTGGAT+TGG 0.582084 8.3:-62049433 MS.gene57529:CDS
CCAAAACCATATAGATGACG+TGG 0.584587 8.3:+62049954 None:intergenic
ACCCACAAACCATAATCCAC+AGG 0.594022 8.3:+62049630 None:intergenic
GAATCCGAATGCATCTGAAG+TGG 0.598471 8.3:-62049367 MS.gene57529:CDS
GAGTCTCTGATTTCACTCCC+TGG 0.623669 8.3:-62049333 MS.gene57529:CDS
AACCATATAGATGACGTGGA+TGG 0.644793 8.3:+62049958 None:intergenic
GTTGGAACTGACGGTGATCG+TGG 0.645956 8.3:-62049438 MS.gene57529:CDS
TTGGCAGCAAAAGGAGACAA+AGG 0.647941 8.3:+62049999 None:intergenic
GGTGATATTGTTGGAACTGA+CGG 0.665403 8.3:-62049447 MS.gene57529:CDS
AAACTTGTTCACGGTCACCA+GGG 0.678032 8.3:+62049316 None:intergenic
TTATTATCATGATATACGAG+TGG 0.685713 8.3:-62049727 MS.gene57529:CDS
GTATTCAAATAAGTGATGTG+AGG 0.692775 8.3:+62049819 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAATTATAAAATTAA+AGG - chr8.3:62049561-62049580 MS.gene57529:CDS 0.0%
!!! TTTTATAATTAAAATATCGT+CGG + chr8.3:62049557-62049576 None:intergenic 10.0%
!! TTTATAATTAAAATATCGTC+GGG + chr8.3:62049556-62049575 None:intergenic 15.0%
!! TTATAATTAAAATATCGTCG+GGG + chr8.3:62049555-62049574 None:intergenic 20.0%
!!! TATTGTTGTCTTTGATTTAA+TGG - chr8.3:62049965-62049984 MS.gene57529:CDS 20.0%
! AAAGCAGGATTATTCTTTAA+TGG - chr8.3:62049891-62049910 MS.gene57529:CDS 25.0%
! AAGCAGGATTATTCTTTAAT+GGG - chr8.3:62049892-62049911 MS.gene57529:CDS 25.0%
! AATACATGGAATGAAATTGA+AGG - chr8.3:62049822-62049841 MS.gene57529:CDS 25.0%
! ATTAAAGAATAATCCTGCTT+TGG + chr8.3:62049892-62049911 None:intergenic 25.0%
! ATTTGAATGATTAATTCAGC+AGG + chr8.3:62049347-62049366 None:intergenic 25.0%
! CATCACTTATTTGAATACAA+CGG - chr8.3:62049851-62049870 MS.gene57529:CDS 25.0%
! TCTCATTTAGAGATAATACA+TGG - chr8.3:62049808-62049827 MS.gene57529:CDS 25.0%
! TTATTATCATGATATACGAG+TGG - chr8.3:62049938-62049957 MS.gene57529:CDS 25.0%
!! ACTTTTTGTAGAGTATATAG+GGG + chr8.3:62050198-62050217 None:intergenic 25.0%
!! TTGTCTTTGATTTAATGGAA+AGG - chr8.3:62049970-62049989 MS.gene57529:CDS 25.0%
!!! CACTTTTTGTAGAGTATATA+GGG + chr8.3:62050199-62050218 None:intergenic 25.0%
AAAATTAAAGGTTCATGCAG+AGG - chr8.3:62049573-62049592 MS.gene57529:CDS 30.0%
AAATTAAAGGTTCATGCAGA+GGG - chr8.3:62049574-62049593 MS.gene57529:CDS 30.0%
AATACAAACAACATTCGTCT+TGG - chr8.3:62050135-62050154 MS.gene57529:intron 30.0%
AATTTCTCAGTCTATGGAAT+AGG - chr8.3:62050066-62050085 MS.gene57529:intron 30.0%
ACAAAAAGTGGTGATATTGT+TGG - chr8.3:62050209-62050228 MS.gene57529:intron 30.0%
AGCAGGATTATTCTTTAATG+GGG - chr8.3:62049893-62049912 MS.gene57529:CDS 30.0%
ATATAATGAAGTGCATCCTA+AGG + chr8.3:62049778-62049797 None:intergenic 30.0%
ATTAAGAGATGATTACTTGG+TGG - chr8.3:62049743-62049762 MS.gene57529:CDS 30.0%
CCAAGTAATCATCTCTTAAT+CGG + chr8.3:62049743-62049762 None:intergenic 30.0%
CCTATATACTCTACAAAAAG+TGG - chr8.3:62050197-62050216 MS.gene57529:intron 30.0%
GAAATCGACAGTTGAAATAT+GGG - chr8.3:62050103-62050122 MS.gene57529:intron 30.0%
GGAATAGGAACTTTCATAAT+TGG - chr8.3:62050081-62050100 MS.gene57529:intron 30.0%
GTATTCAAATAAGTGATGTG+AGG + chr8.3:62049849-62049868 None:intergenic 30.0%
TAAAACAGAATCATGGTTGA+TGG + chr8.3:62049511-62049530 None:intergenic 30.0%
TCTTTAATGGGGATATTCAT+TGG - chr8.3:62049904-62049923 MS.gene57529:CDS 30.0%
TCTTTGTGAAATCTAGAAGA+TGG + chr8.3:62049642-62049661 None:intergenic 30.0%
TGATATGGATACAATTCTTG+CGG + chr8.3:62049439-62049458 None:intergenic 30.0%
!!! CCACTTTTTGTAGAGTATAT+AGG + chr8.3:62050200-62050219 None:intergenic 30.0%
AATCAGAGACTCCGTATAAA+TGG + chr8.3:62050324-62050343 None:intergenic 35.0%
ACATGCAAATTTGCAAAGTG+AGG + chr8.3:62049405-62049424 None:intergenic 35.0%
AGTTGAAATATGGGTGATGA+AGG - chr8.3:62050112-62050131 MS.gene57529:intron 35.0%
CCGATTAAGAGATGATTACT+TGG - chr8.3:62049740-62049759 MS.gene57529:CDS 35.0%
GATGGATGTCTCAAAATCTA+TGG + chr8.3:62049493-62049512 None:intergenic 35.0%
GGAAATCGACAGTTGAAATA+TGG - chr8.3:62050102-62050121 MS.gene57529:intron 35.0%
GTTCTACAAACCTCTACATA+TGG - chr8.3:62049613-62049632 MS.gene57529:CDS 35.0%
TAATGGGGATATTCATTGGT+TGG - chr8.3:62049908-62049927 MS.gene57529:CDS 35.0%
TTGGAGAATTTCTCAGTCTA+TGG - chr8.3:62050060-62050079 MS.gene57529:intron 35.0%
! AAGATGGATTCCATATGTAG+AGG + chr8.3:62049626-62049645 None:intergenic 35.0%
! ATCTGAAGTGGCCATTTATA+CGG - chr8.3:62050310-62050329 MS.gene57529:intron 35.0%
! CAACCATGATTCTGTTTTAC+TGG - chr8.3:62049512-62049531 MS.gene57529:CDS 35.0%
! GATTATGGTTTGTGGGTATT+TGG - chr8.3:62050041-62050060 MS.gene57529:intron 35.0%
!!! TTGGTGGTTTTATTGTCCTT+AGG - chr8.3:62049759-62049778 MS.gene57529:CDS 35.0%
AACCATAATCCACAGGATCA+TGG + chr8.3:62050031-62050050 None:intergenic 40.0%
AACCATATAGATGACGTGGA+TGG + chr8.3:62049710-62049729 None:intergenic 40.0%
CAGCAGGAAGATATAACATC+TGG + chr8.3:62049331-62049350 None:intergenic 40.0%
CCAAAACCATATAGATGACG+TGG + chr8.3:62049714-62049733 None:intergenic 40.0%
GGATCATGGTCAAAATCATC+TGG + chr8.3:62050017-62050036 None:intergenic 40.0%
GGGGAAAAGAACATAATGCT+AGG + chr8.3:62050179-62050198 None:intergenic 40.0%
GGTCCAGTAAAACAGAATCA+TGG + chr8.3:62049518-62049537 None:intergenic 40.0%
GGTGATATTGTTGGAACTGA+CGG - chr8.3:62050218-62050237 MS.gene57529:intron 40.0%
GTCATCGTATGCATGTACTT+TGG + chr8.3:62049688-62049707 None:intergenic 40.0%
TGGTCAAAATCATCTGGAAG+AGG + chr8.3:62050011-62050030 None:intergenic 40.0%
! AGGTCGAGTTGTTGTTGATA+TGG + chr8.3:62049454-62049473 None:intergenic 40.0%
! ATCCTGTGGATTATGGTTTG+TGG - chr8.3:62050033-62050052 MS.gene57529:intron 40.0%
! CCACGTCATCTATATGGTTT+TGG - chr8.3:62049711-62049730 MS.gene57529:CDS 40.0%
! TCCTGTGGATTATGGTTTGT+GGG - chr8.3:62050034-62050053 MS.gene57529:intron 40.0%
!! AATCCTGCTTTGGAAGCTTT+GGG + chr8.3:62049882-62049901 None:intergenic 40.0%
!! TAATCCTGCTTTGGAAGCTT+TGG + chr8.3:62049883-62049902 None:intergenic 40.0%
!! TGATTTTGACCATGATCCTG+TGG - chr8.3:62050019-62050038 MS.gene57529:intron 40.0%
ACCCACAAACCATAATCCAC+AGG + chr8.3:62050038-62050057 None:intergenic 45.0%
ATGGAGCGAATTTCAGCAAG+AGG + chr8.3:62049474-62049493 None:intergenic 45.0%
ATGGCCACTTCAGATGCATT+CGG + chr8.3:62050305-62050324 None:intergenic 45.0%
GAATCCGAATGCATCTGAAG+TGG - chr8.3:62050298-62050317 MS.gene57529:intron 45.0%
GACCATCCACGTCATCTATA+TGG - chr8.3:62049705-62049724 MS.gene57529:CDS 45.0%
GCATGTACTTTGGCAGCAAA+AGG + chr8.3:62049678-62049697 None:intergenic 45.0%
GTCGGGGAAGTAGAAAAGTA+TGG + chr8.3:62049539-62049558 None:intergenic 45.0%
TATCCCAAAGCTTCCAAAGC+AGG - chr8.3:62049876-62049895 MS.gene57529:CDS 45.0%
TTGGCAGCAAAAGGAGACAA+AGG + chr8.3:62049669-62049688 None:intergenic 45.0%
! AAACTTGTTCACGGTCACCA+GGG + chr8.3:62050352-62050371 None:intergenic 45.0%
! GACCATGATCCTGTGGATTA+TGG - chr8.3:62050026-62050045 MS.gene57529:intron 45.0%
! TAAACTTGTTCACGGTCACC+AGG + chr8.3:62050353-62050372 None:intergenic 45.0%
AACTGACGGTGATCGTGGAT+TGG - chr8.3:62050232-62050251 MS.gene57529:intron 50.0%
GAGTCTCTGATTTCACTCCC+TGG - chr8.3:62050332-62050351 MS.gene57529:CDS 50.0%
GTTGGAACTGACGGTGATCG+TGG - chr8.3:62050227-62050246 MS.gene57529:intron 55.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 62049314 62050373 62049314 ID=MS.gene57529
chr8.3 mRNA 62049314 62050373 62049314 ID=MS.gene57529.t1;Parent=MS.gene57529
chr8.3 exon 62050315 62050373 62050315 ID=MS.gene57529.t1.exon1;Parent=MS.gene57529.t1
chr8.3 CDS 62050315 62050373 62050315 ID=cds.MS.gene57529.t1;Parent=MS.gene57529.t1
chr8.3 exon 62049314 62050037 62049314 ID=MS.gene57529.t1.exon2;Parent=MS.gene57529.t1
chr8.3 CDS 62049314 62050037 62049314 ID=cds.MS.gene57529.t1;Parent=MS.gene57529.t1
Gene Sequence

>MS.gene57529

ATGACGAAGATGAACCAGATGTTATATCTTCCTGCTGAATTAATCATTCAAATGCGTTTGTAAGTCATTGTTTTCTCTTATCTCTGATCCTCACTTTGCAAATTTGCATGTTGATGTTTCTGCCGCAAGAATTGTATCCATATCAACAACAACTCGACCTCTTGCTGAAATTCGCTCCATAGATTTTGAGACATCCATCAACCATGATTCTGTTTTACTGGACCATACTTTTCTACTTCCCCGACGATATTTTAATTATAAAATTAAAGGTTCATGCAGAGGGTTTATATTTTTGCACTGTTCTACAAACCTCTACATATGGAATCCATCTTCTAGATTTCACAAAGAAATACCTTTGTCTCCTTTTGCTGCCAAAGTACATGCATACGATGACCATCCACGTCATCTATATGGTTTTGGTTATGACCGATTAAGAGATGATTACTTGGTGGTTTTATTGTCCTTAGGATGCACTTCATTATATTTAGAGTTTTTCTCATTTAGAGATAATACATGGAATGAAATTGAAGGTCCTCACATCACTTATTTGAATACAACGGATTATCCCAAAGCTTCCAAAGCAGGATTATTCTTTAATGGGGATATTCATTGGTTGGCATCTCGTTATTATCATGATATACGAGTGGAAGTTATTGTTGTCTTTGATTTAATGGAAAGGAAACTGTTAGAGATACCTCTTCCAGATGATTTTGACCATGATCCTGTGGATTATGGTTTGTGGGTATTTGGAGAATTTCTCAGTCTATGGAATAGGAACTTTCATAATTGGAAATCGACAGTTGAAATATGGGTGATGAAGGAATACAAACAACATTCGTCTTGGACTAAGTCTCTTGTAATTCCTAGCATTATGTTCTTTTCCCCTATATACTCTACAAAAAGTGGTGATATTGTTGGAACTGACGGTGATCGTGGATTGGTGAAGTATAATGATAAACGACAGTCGATAGAGTATCTCGAAATGAATCCGAATGCATCTGAAGTGGCCATTTATACGGAGTCTCTGATTTCACTCCCTGGTGACCGTGAACAAGTTTAA
Protein sequence

>MS.gene57529.t1

MTKMNQMLYLPAELIIQMRLFHKEIPLSPFAAKVHAYDDHPRHLYGFGYDRLRDDYLVVLLSLGCTSLYLEFFSFRDNTWNEIEGPHITYLNTTDYPKASKAGLFFNGDIHWLASRYYHDIRVEVIVVFDLMERKLLEIPLPDDFDHDPVDYGLWVFGEFLSLWNRNFHNWKSTVEIWVMKEYKQHSSWTKSLVIPSIMFFSPIYSTKSGDIVGTDGDRGLVKYNDKRQSIEYLEMNPNASEVAIYTESLISLPGDREQV