AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016220.t1 MTR_2g048580 66.019 103 28 2 1 103 1 96 3.00e-38 136
MS.gene016220.t1 MTR_2g048580 44.037 109 53 3 127 234 241 342 1.14e-19 86.7
MS.gene016220.t1 MTR_7g079400 57.600 125 46 2 117 234 213 337 2.98e-37 133
MS.gene016220.t1 MTR_7g079450 60.000 110 41 1 128 234 28 137 3.88e-35 122
MS.gene016220.t1 MTR_7g079370 55.462 119 49 2 122 236 240 358 2.49e-33 124
MS.gene016220.t1 MTR_8g098830 38.835 206 115 5 1 206 1 195 7.91e-32 116
MS.gene016220.t1 MTR_4g023430 35.833 240 93 9 3 234 36 222 2.80e-31 115
MS.gene016220.t1 MTR_7g079420 56.522 115 39 4 127 234 1034 1144 1.57e-30 119
MS.gene016220.t1 MTR_8g102520 51.220 123 57 1 115 234 200 322 2.46e-30 115
MS.gene016220.t1 MTR_4g122860 33.808 281 127 10 1 238 60 324 4.48e-27 106
MS.gene016220.t1 MTR_1g055195 37.956 137 83 1 103 237 345 481 2.01e-25 103
MS.gene016220.t1 MTR_6g060650 39.241 158 88 4 80 233 219 372 3.68e-25 102
MS.gene016220.t1 MTR_6g060650 41.837 98 51 1 1 98 1 92 1.51e-11 63.5
MS.gene016220.t1 MTR_4g117530 34.728 239 138 6 7 234 22 253 3.84e-25 99.8
MS.gene016220.t1 MTR_4g118370 45.763 118 60 2 114 229 140 255 1.14e-24 98.6
MS.gene016220.t1 MTR_4g116320 31.855 248 138 8 8 228 9 252 1.60e-24 98.2
MS.gene016220.t1 MTR_5g070088 52.577 97 38 2 3 98 2 91 5.94e-24 99.0
MS.gene016220.t1 MTR_5g070088 44.737 114 57 3 123 230 268 381 4.28e-21 90.9
MS.gene016220.t1 MTR_1g055135 46.457 127 62 4 114 234 249 375 8.08e-24 98.6
MS.gene016220.t1 MTR_1g055135 45.192 104 48 4 2 103 7 103 5.46e-16 76.6
MS.gene016220.t1 MTR_3g103020 38.788 165 83 6 80 234 222 378 9.42e-24 98.2
MS.gene016220.t1 MTR_3g103020 46.237 93 43 1 6 98 18 103 2.42e-19 85.9
MS.gene016220.t1 MTR_5g097210 49.515 103 49 2 130 229 256 358 2.88e-23 97.1
MS.gene016220.t1 MTR_5g070080 50.515 97 40 2 3 98 5 94 4.05e-23 96.7
MS.gene016220.t1 MTR_5g070080 47.706 109 50 4 128 230 274 381 4.81e-19 85.1
MS.gene016220.t1 MTR_8g433030 39.456 147 81 5 88 230 196 338 5.45e-23 95.5
MS.gene016220.t1 MTR_8g433030 39.316 117 55 5 3 119 35 135 4.13e-16 76.6
MS.gene016220.t1 MTR_8g032390 39.456 147 81 5 88 230 229 371 8.19e-23 95.5
MS.gene016220.t1 MTR_8g032390 43.678 87 42 2 3 89 35 114 2.00e-15 74.7
MS.gene016220.t1 MTR_8g040935 39.073 151 72 6 96 234 66 208 1.13e-22 92.0
MS.gene016220.t1 MTR_4g117720 36.686 169 92 6 72 230 210 373 4.32e-22 93.6
MS.gene016220.t1 MTR_4g116330 44.615 130 60 5 114 234 254 380 5.22e-22 93.6
MS.gene016220.t1 MTR_4g116330 45.652 92 44 2 3 94 18 103 2.21e-16 77.8
MS.gene016220.t1 MTR_4g021785 39.583 144 78 4 95 234 217 355 1.07e-21 92.4
MS.gene016220.t1 MTR_4g021785 40.541 111 55 4 2 110 3 104 2.54e-16 77.4
MS.gene016220.t1 MTR_1g055175 41.085 129 69 4 111 234 75 201 1.57e-21 89.0
MS.gene016220.t1 MTR_4g109270 37.576 165 85 6 80 234 208 364 1.78e-21 92.0
MS.gene016220.t1 MTR_4g109270 48.000 100 42 4 1 98 1 92 4.64e-17 79.3
MS.gene016220.t1 MTR_4g118360 42.202 109 59 1 130 234 18 126 1.89e-21 86.7
MS.gene016220.t1 MTR_3g034130 47.959 98 44 2 2 98 3 94 3.92e-21 90.9
MS.gene016220.t1 MTR_3g034130 32.680 153 94 4 72 220 215 362 5.36e-17 79.3
MS.gene016220.t1 MTR_4g117750 44.248 113 61 1 129 239 252 364 6.80e-21 91.3
MS.gene016220.t1 MTR_4g117750 50.435 115 49 5 130 238 373 485 1.52e-20 90.1
MS.gene016220.t1 MTR_4g117750 54.444 90 32 3 6 93 1 83 5.83e-16 77.0
MS.gene016220.t1 MTR_4g109280 45.536 112 54 3 129 234 249 359 9.31e-21 89.7
MS.gene016220.t1 MTR_4g109280 43.878 98 44 3 1 98 1 87 1.20e-15 75.5
MS.gene016220.t1 MTR_4g023130 32.124 193 105 5 45 233 142 312 1.09e-20 89.0
MS.gene016220.t1 MTR_4g023130 56.522 69 28 2 1 68 1 68 1.29e-15 75.1
MS.gene016220.t1 MTR_1g055165 42.063 126 66 4 114 234 195 318 1.34e-20 89.0
MS.gene016220.t1 MTR_1g055165 43.617 94 49 3 7 97 9 101 2.20e-15 74.3
MS.gene016220.t1 MTR_4g094365 44.094 127 62 5 114 234 241 364 1.54e-20 89.4
MS.gene016220.t1 MTR_4g094365 42.424 99 50 2 1 99 1 92 4.08e-16 76.6
MS.gene016220.t1 MTR_4g117780 48.182 110 41 5 1 103 1 101 2.83e-20 88.6
MS.gene016220.t1 MTR_4g117780 41.441 111 59 3 130 234 257 367 1.12e-18 84.0
MS.gene016220.t1 MTR_8g433040 42.742 124 60 4 117 234 246 364 2.95e-20 88.6
MS.gene016220.t1 MTR_8g433040 42.478 113 44 4 3 112 13 107 1.80e-15 75.1
MS.gene016220.t1 MTR_8g032380 42.742 124 60 4 117 234 246 364 2.95e-20 88.6
MS.gene016220.t1 MTR_8g032380 42.478 113 44 4 3 112 13 107 1.80e-15 75.1
MS.gene016220.t1 MTR_8g013010 40.541 111 59 2 1 110 47 151 3.41e-20 87.8
MS.gene016220.t1 MTR_4g116330 47.368 114 50 4 130 234 229 341 3.94e-20 87.8
MS.gene016220.t1 MTR_4g116330 45.652 92 44 2 3 94 18 103 2.20e-16 77.4
MS.gene016220.t1 MTR_5g023000 51.064 94 42 2 145 234 6 99 4.66e-20 82.4
MS.gene016220.t1 MTR_3g034180 49.000 100 43 3 1 98 115 208 6.02e-20 88.6
MS.gene016220.t1 MTR_3g034180 34.940 166 98 6 72 233 329 488 5.09e-18 82.8
MS.gene016220.t1 MTR_5g070130 46.789 109 52 3 128 230 264 372 6.80e-20 87.8
MS.gene016220.t1 MTR_5g070130 45.455 110 54 2 1 110 4 107 3.32e-18 82.8
MS.gene016220.t1 MTR_4g117850 45.385 130 50 7 113 230 256 376 9.24e-20 87.0
MS.gene016220.t1 MTR_4g117850 47.475 99 42 4 7 103 22 112 1.84e-16 77.8
MS.gene016220.t1 MTR_5g069120 56.790 81 30 2 18 98 1 76 1.04e-19 83.6
MS.gene016220.t1 MTR_4g023070 33.523 176 98 4 78 237 201 373 1.12e-19 87.0
MS.gene016220.t1 MTR_4g023070 52.222 90 34 3 8 96 3 84 1.29e-19 86.7
MS.gene016220.t1 MTR_4g023080 35.443 158 93 4 80 233 201 353 1.17e-19 86.7
MS.gene016220.t1 MTR_4g023080 50.505 99 39 4 1 97 1 91 2.25e-19 85.9
MS.gene016220.t1 MTR_4g118380 50.000 94 43 2 118 209 266 357 1.25e-19 86.7
MS.gene016220.t1 MTR_4g118380 42.857 98 50 1 1 98 1 92 1.09e-13 69.7
MS.gene016220.t1 MTR_3g034160 47.959 98 44 2 3 99 4 95 1.96e-19 86.3
MS.gene016220.t1 MTR_3g034160 35.152 165 98 5 72 232 215 374 1.06e-15 75.9
MS.gene016220.t1 MTR_4g117770 41.441 111 59 3 130 234 257 367 1.28e-18 84.0
MS.gene016220.t1 MTR_4g117770 46.078 102 42 3 1 98 1 93 4.94e-16 76.6
MS.gene016220.t1 MTR_4g117810 41.441 111 59 3 130 234 257 367 1.28e-18 84.0
MS.gene016220.t1 MTR_4g117810 46.078 102 42 3 1 98 1 93 4.94e-16 76.6
MS.gene016220.t1 MTR_4g023120 49.438 89 38 2 8 96 3 84 1.50e-18 84.0
MS.gene016220.t1 MTR_4g023120 32.184 174 99 4 77 234 200 370 6.78e-16 76.3
MS.gene016220.t1 MTR_4g122850 37.778 135 69 6 113 238 240 368 1.87e-18 83.6
MS.gene016220.t1 MTR_4g023440 45.745 94 49 1 143 234 239 332 2.80e-18 82.8
MS.gene016220.t1 MTR_4g023440 49.398 83 34 2 7 87 17 93 2.05e-15 74.7
MS.gene016220.t1 MTR_4g023090 48.515 101 43 4 7 105 15 108 3.22e-18 82.8
MS.gene016220.t1 MTR_4g023090 37.398 123 60 3 130 235 263 385 1.69e-16 78.2
MS.gene016220.t1 MTR_4g118400 47.872 94 45 2 139 228 201 294 3.70e-18 81.6
MS.gene016220.t1 MTR_4g023380 46.316 95 49 1 143 235 284 378 8.19e-18 81.6
MS.gene016220.t1 MTR_4g023380 47.059 85 40 2 3 87 11 90 1.94e-12 66.2
MS.gene016220.t1 MTR_1g055250 29.339 242 136 8 7 221 20 253 1.82e-17 80.5
MS.gene016220.t1 MTR_4g023190 36.765 136 80 3 103 232 222 357 3.27e-17 79.7
MS.gene016220.t1 MTR_4g023190 48.958 96 42 3 3 98 5 93 3.20e-14 71.2
MS.gene016220.t1 MTR_5g008530 58.621 58 21 1 5 62 15 69 9.18e-17 72.8
MS.gene016220.t1 MTR_4g117870 37.600 125 70 4 114 234 147 267 1.77e-16 76.6
MS.gene016220.t1 MTR_4g023200 30.256 195 127 5 45 232 166 358 2.17e-16 77.4
MS.gene016220.t1 MTR_4g023200 51.042 96 40 3 3 98 5 93 1.25e-12 66.6
MS.gene016220.t1 MTR_4g109290 29.310 232 109 9 7 234 8 188 2.26e-16 75.1
MS.gene016220.t1 MTR_4g023150 30.256 195 127 5 45 232 166 358 1.26e-15 75.5
MS.gene016220.t1 MTR_4g023150 48.958 96 42 3 3 98 5 93 1.42e-14 72.4
MS.gene016220.t1 MTR_6g463430 37.607 117 62 4 124 234 91 202 2.28e-14 69.7
MS.gene016220.t1 MTR_7g117720 50.575 87 35 4 151 229 186 272 3.91e-14 70.5
MS.gene016220.t1 MTR_4g114700 39.048 105 52 4 132 225 115 218 4.83e-12 63.9
MS.gene016220.t1 MTR_1g097330 39.394 99 53 1 8 106 16 107 7.04e-12 64.7
MS.gene016220.t1 MTR_2g021150 37.778 90 50 2 7 90 13 102 2.22e-11 63.2
MS.gene016220.t1 MTR_1g097560 55.556 45 20 0 5 49 33 77 2.92e-11 62.8
MS.gene016220.t1 MTR_4g121580 40.000 90 48 2 1 84 1 90 3.37e-11 62.8
MS.gene016220.t1 MTR_3g036430 36.036 111 65 2 8 116 20 126 4.71e-11 62.0
MS.gene016220.t1 MTR_1g097490 54.000 50 23 0 5 54 46 95 4.83e-11 62.4
MS.gene016220.t1 MTR_3g024150 45.714 70 35 2 11 78 38 106 6.22e-11 62.0
MS.gene016220.t1 MTR_5g074870 55.814 43 19 0 8 50 82 124 7.41e-11 59.3
MS.gene016220.t1 MTR_3g463170 55.814 43 19 0 8 50 92 134 7.51e-11 59.3
MS.gene016220.t1 MTR_4g107820 51.064 47 23 0 8 54 36 82 9.61e-11 61.2
MS.gene016220.t1 MTR_4g107780 51.064 47 23 0 8 54 36 82 9.61e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 48 sgRNAs with CRISPR-Local

Find 75 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACAATTTGTAAAGGATAT+TGG 0.299674 7.1:-27895505 None:intergenic
CTCTGTATACACTCCCATTA+GGG 0.305448 7.1:-27895620 None:intergenic
TATTTCAGAAAGACCCCTAA+TGG 0.330298 7.1:+27895606 MS.gene016220:CDS
TAGGGGTCTTTCTGAAATAA+TGG 0.339803 7.1:-27895602 None:intergenic
TTTCTTGCAATTAGAGCCTA+TGG 0.386989 7.1:+27894964 MS.gene016220:CDS
GGAAATCATGCTGAGGTTGC+CGG 0.397473 7.1:+27894699 MS.gene016220:CDS
ACTCTGTATACACTCCCATT+AGG 0.400499 7.1:-27895621 None:intergenic
GAATATGATATGTTTGTGTT+TGG 0.401651 7.1:+27895355 MS.gene016220:CDS
TCTTCCGGAGGACGTGATAA+AGG 0.407155 7.1:+27894678 MS.gene016220:CDS
CCAATATCCTTTACAAATTG+TGG 0.408775 7.1:+27895505 MS.gene016220:CDS
ACTTCGATACAGTTAAGATA+TGG 0.420382 7.1:+27895404 MS.gene016220:CDS
ACAAATTGTGGTGACATAGT+TGG 0.445048 7.1:+27895517 MS.gene016220:CDS
ATTTCAGAAAGACCCCTAAT+GGG 0.453533 7.1:+27895607 MS.gene016220:CDS
TCAGCTTGCTCACCGCCATC+AGG 0.459404 7.1:-27895658 None:intergenic
CTCTAATTGCAAGAAAATCT+AGG 0.464162 7.1:-27894957 None:intergenic
GAAGAAGAGCGTGTATCTTC+CGG 0.469767 7.1:+27894663 MS.gene016220:CDS
TATGATATGTTTGTGTTTGG+AGG 0.478359 7.1:+27895358 MS.gene016220:CDS
AAATCTACGGATAGGATTTG+AGG 0.485569 7.1:-27894874 None:intergenic
GTTGGAATTGATCGTGAGGT+TGG 0.487842 7.1:+27895535 MS.gene016220:CDS
AATATGCAGTGGATTCATCT+TGG 0.496035 7.1:+27895437 MS.gene016220:CDS
ATTTCCTTTATCACGTCCTC+CGG 0.500612 7.1:-27894682 None:intergenic
CTTCGATACAGTTAAGATAT+GGG 0.503345 7.1:+27895405 MS.gene016220:CDS
AAGTGATGCATTAAAATCTA+CGG 0.525643 7.1:-27894887 None:intergenic
GCAAGTGTGTCTGTAAGTTA+TGG 0.541785 7.1:+27894740 MS.gene016220:CDS
CATAAGTCTATGTGTGGGTG+AGG 0.547931 7.1:-27894815 None:intergenic
AATTGATCGTGAGGTTGGAT+TGG 0.548225 7.1:+27895540 MS.gene016220:CDS
TATGTCACCACAATTTGTAA+AGG 0.551865 7.1:-27895512 None:intergenic
ACTCATCAGTGCATGGATTG+TGG 0.552642 7.1:+27895381 MS.gene016220:CDS
ATGCATTAAAATCTACGGAT+AGG 0.556627 7.1:-27894882 None:intergenic
CAGCGTAGTACAGATTTCAC+CGG 0.572900 7.1:-27894718 None:intergenic
TGTTTGCTGACACGGGTGGA+TGG 0.590175 7.1:-27894990 None:intergenic
TTGGAGGACTCATCAGTGCA+TGG 0.593940 7.1:+27895374 MS.gene016220:CDS
TTGGTGATGTTTAATGACAA+AGG 0.594213 7.1:+27895559 MS.gene016220:CDS
GAGGATCATAAGTCTATGTG+TGG 0.606479 7.1:-27894821 None:intergenic
ACACATAGACTTATGATCCT+CGG 0.612876 7.1:+27894823 MS.gene016220:CDS
TCTCTGCTTTCACTACCTGA+TGG 0.624350 7.1:+27895643 MS.gene016220:CDS
CACGGGTGGATGGATTCCAT+AGG 0.627575 7.1:-27894980 None:intergenic
AAATGTGAATTAGCAAAGTG+AGG 0.650322 7.1:-27894781 None:intergenic
TATTTGTTTGCTGACACGGG+TGG 0.654992 7.1:-27894994 None:intergenic
GAAGAGCGTGTATCTTCCGG+AGG 0.670706 7.1:+27894666 MS.gene016220:CDS
CTGCTTTCACTACCTGATGG+CGG 0.674258 7.1:+27895646 MS.gene016220:CDS
GGTGATGAATGAATATGCAG+TGG 0.680038 7.1:+27895426 MS.gene016220:CDS
ATTGCAAGAAAATCTAGGCG+AGG 0.681427 7.1:-27894952 None:intergenic
AGGATCATAAGTCTATGTGT+GGG 0.682690 7.1:-27894820 None:intergenic
TGATAAAGGAAATCATGCTG+AGG 0.684624 7.1:+27894692 MS.gene016220:CDS
CATAGTTGGAATTGATCGTG+AGG 0.688767 7.1:+27895531 MS.gene016220:CDS
TCTGTATACACTCCCATTAG+GGG 0.691542 7.1:-27895619 None:intergenic
TGAAAGCATGACGAGCTCCG+AGG 0.708193 7.1:-27894840 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGATGATTTTGAAAATTG+TGG + chr7.1:27895322-27895341 MS.gene016220:CDS 20.0%
!!! TATTATTGCCTTTGATTTAA+AGG + chr7.1:27895299-27895318 MS.gene016220:intron 20.0%
! AAGTGATGCATTAAAATCTA+CGG - chr7.1:27894890-27894909 None:intergenic 25.0%
! AAGTTATCAAGATTCTCATA+AGG - chr7.1:27895198-27895217 None:intergenic 25.0%
! GAATATGATATGTTTGTGTT+TGG + chr7.1:27895355-27895374 MS.gene016220:CDS 25.0%
! TCATCTTTCCTTTAAATCAA+AGG - chr7.1:27895310-27895329 None:intergenic 25.0%
! TCTTGATAAGTTCAATTCAT+TGG + chr7.1:27895236-27895255 MS.gene016220:intron 25.0%
!! GGCAATAATAACAAACATTT+TGG - chr7.1:27895289-27895308 None:intergenic 25.0%
AAATGTGAATTAGCAAAGTG+AGG - chr7.1:27894784-27894803 None:intergenic 30.0%
AAGGATATTGGCAAAAATTC+CGG - chr7.1:27895496-27895515 None:intergenic 30.0%
AAGTAAGTAATCATCAGTTG+AGG - chr7.1:27895090-27895109 None:intergenic 30.0%
AAGTCAATCGAATTAGATAC+TGG - chr7.1:27895117-27895136 None:intergenic 30.0%
ACTTCGATACAGTTAAGATA+TGG + chr7.1:27895404-27895423 MS.gene016220:CDS 30.0%
AGTAAGTAATCATCAGTTGA+GGG - chr7.1:27895089-27895108 None:intergenic 30.0%
AGTATCTAATTCGATTGACT+TGG + chr7.1:27895116-27895135 MS.gene016220:intron 30.0%
ATGCATTAAAATCTACGGAT+AGG - chr7.1:27894885-27894904 None:intergenic 30.0%
CATATTCTCAACTTTCTGTA+TGG + chr7.1:27895050-27895069 MS.gene016220:intron 30.0%
CCAATATCCTTTACAAATTG+TGG + chr7.1:27895505-27895524 MS.gene016220:CDS 30.0%
CCACAATTTGTAAAGGATAT+TGG - chr7.1:27895508-27895527 None:intergenic 30.0%
CTCTAATTGCAAGAAAATCT+AGG - chr7.1:27894960-27894979 None:intergenic 30.0%
CTTCGATACAGTTAAGATAT+GGG + chr7.1:27895405-27895424 MS.gene016220:CDS 30.0%
TATGATATGTTTGTGTTTGG+AGG + chr7.1:27895358-27895377 MS.gene016220:CDS 30.0%
TATGTCACCACAATTTGTAA+AGG - chr7.1:27895515-27895534 None:intergenic 30.0%
TTGAGAATATGCTCATCATT+GGG - chr7.1:27895041-27895060 None:intergenic 30.0%
! CTTGATAACTTCAATGAACT+AGG + chr7.1:27895207-27895226 MS.gene016220:intron 30.0%
!! TTGGTGATGTTTAATGACAA+AGG + chr7.1:27895559-27895578 MS.gene016220:CDS 30.0%
AAATCTACGGATAGGATTTG+AGG - chr7.1:27894877-27894896 None:intergenic 35.0%
ACAAATTGTGGTGACATAGT+TGG + chr7.1:27895517-27895536 MS.gene016220:CDS 35.0%
ACACATAGACTTATGATCCT+CGG + chr7.1:27894823-27894842 MS.gene016220:CDS 35.0%
AGGATCATAAGTCTATGTGT+GGG - chr7.1:27894823-27894842 None:intergenic 35.0%
ATTTCAGAAAGACCCCTAAT+GGG + chr7.1:27895607-27895626 MS.gene016220:CDS 35.0%
GATAAGTTCAATTCATTGGC+TGG + chr7.1:27895240-27895259 MS.gene016220:intron 35.0%
GTTGAGAATATGCTCATCAT+TGG - chr7.1:27895042-27895061 None:intergenic 35.0%
TATTTCAGAAAGACCCCTAA+TGG + chr7.1:27895606-27895625 MS.gene016220:CDS 35.0%
TGATAAAGGAAATCATGCTG+AGG + chr7.1:27894692-27894711 MS.gene016220:CDS 35.0%
TTTCTTGCAATTAGAGCCTA+TGG + chr7.1:27894964-27894983 MS.gene016220:CDS 35.0%
! AATATGCAGTGGATTCATCT+TGG + chr7.1:27895437-27895456 MS.gene016220:CDS 35.0%
! TAGGTATTTGTTTGCTGACA+CGG - chr7.1:27895001-27895020 None:intergenic 35.0%
!! TAGGGGTCTTTCTGAAATAA+TGG - chr7.1:27895605-27895624 None:intergenic 35.0%
!!! CTCAGACTCTTGTTTTTGAT+AGG + chr7.1:27895461-27895480 MS.gene016220:CDS 35.0%
AATTGATCGTGAGGTTGGAT+TGG + chr7.1:27895540-27895559 MS.gene016220:CDS 40.0%
ACTCTGTATACACTCCCATT+AGG - chr7.1:27895624-27895643 None:intergenic 40.0%
AGTAATCATCAGTTGAGGGT+TGG - chr7.1:27895085-27895104 None:intergenic 40.0%
ATTGCAAGAAAATCTAGGCG+AGG - chr7.1:27894955-27894974 None:intergenic 40.0%
ATTTCCTTTATCACGTCCTC+CGG - chr7.1:27894685-27894704 None:intergenic 40.0%
CATAGTTGGAATTGATCGTG+AGG + chr7.1:27895531-27895550 MS.gene016220:CDS 40.0%
CTCTGTATACACTCCCATTA+GGG - chr7.1:27895623-27895642 None:intergenic 40.0%
GAGGATCATAAGTCTATGTG+TGG - chr7.1:27894824-27894843 None:intergenic 40.0%
GCAAGTGTGTCTGTAAGTTA+TGG + chr7.1:27894740-27894759 MS.gene016220:CDS 40.0%
GGTGATGAATGAATATGCAG+TGG + chr7.1:27895426-27895445 MS.gene016220:CDS 40.0%
TCATCATTGGGAAGAGCTAT+AGG - chr7.1:27895029-27895048 None:intergenic 40.0%
TCTCAACTTTCTGTATGGCT+TGG + chr7.1:27895055-27895074 MS.gene016220:intron 40.0%
TCTGTATACACTCCCATTAG+GGG - chr7.1:27895622-27895641 None:intergenic 40.0%
! AGGTATTTGTTTGCTGACAC+GGG - chr7.1:27895000-27895019 None:intergenic 40.0%
! TCTCTTTGAGAGCTGATAAG+TGG + chr7.1:27895145-27895164 MS.gene016220:intron 40.0%
! TTTTGATAGGCATTCTGCTC+CGG + chr7.1:27895474-27895493 MS.gene016220:CDS 40.0%
CAGCGTAGTACAGATTTCAC+CGG - chr7.1:27894721-27894740 None:intergenic 45.0%
CATAAGTCTATGTGTGGGTG+AGG - chr7.1:27894818-27894837 None:intergenic 45.0%
CGAGGCAAAAAATCAAGGCT+TGG - chr7.1:27894937-27894956 None:intergenic 45.0%
CTAGGCGAGGCAAAAAATCA+AGG - chr7.1:27894942-27894961 None:intergenic 45.0%
GGAAGAGCTATAGGAGACAT+AGG - chr7.1:27895020-27895039 None:intergenic 45.0%
GTTGGAATTGATCGTGAGGT+TGG + chr7.1:27895535-27895554 MS.gene016220:CDS 45.0%
TCTCTGCTTTCACTACCTGA+TGG + chr7.1:27895643-27895662 MS.gene016220:CDS 45.0%
! ACTCATCAGTGCATGGATTG+TGG + chr7.1:27895381-27895400 MS.gene016220:CDS 45.0%
! GAAGAAGAGCGTGTATCTTC+CGG + chr7.1:27894663-27894682 MS.gene016220:CDS 45.0%
! TATTTGTTTGCTGACACGGG+TGG - chr7.1:27894997-27895016 None:intergenic 45.0%
CTGCTTTCACTACCTGATGG+CGG + chr7.1:27895646-27895665 MS.gene016220:CDS 50.0%
GGAAATCATGCTGAGGTTGC+CGG + chr7.1:27894699-27894718 MS.gene016220:CDS 50.0%
TCTTCCGGAGGACGTGATAA+AGG + chr7.1:27894678-27894697 MS.gene016220:CDS 50.0%
TTGGAGGACTCATCAGTGCA+TGG + chr7.1:27895374-27895393 MS.gene016220:CDS 50.0%
! CACGGGTGGATGGATTCCAT+AGG - chr7.1:27894983-27895002 None:intergenic 55.0%
! GAAGAGCGTGTATCTTCCGG+AGG + chr7.1:27894666-27894685 MS.gene016220:CDS 55.0%
! TGAAAGCATGACGAGCTCCG+AGG - chr7.1:27894843-27894862 None:intergenic 55.0%
! TGTTTGCTGACACGGGTGGA+TGG - chr7.1:27894993-27895012 None:intergenic 55.0%
! TCAGCTTGCTCACCGCCATC+AGG - chr7.1:27895661-27895680 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 27894658 27895696 27894658 ID=MS.gene016220
chr7.1 mRNA 27894658 27895696 27894658 ID=MS.gene016220.t1;Parent=MS.gene016220
chr7.1 exon 27894658 27895001 27894658 ID=MS.gene016220.t1.exon1;Parent=MS.gene016220.t1
chr7.1 CDS 27894658 27895001 27894658 ID=cds.MS.gene016220.t1;Parent=MS.gene016220.t1
chr7.1 exon 27895321 27895696 27895321 ID=MS.gene016220.t1.exon2;Parent=MS.gene016220.t1
chr7.1 CDS 27895321 27895696 27895321 ID=cds.MS.gene016220.t1;Parent=MS.gene016220.t1
Gene Sequence

>MS.gene016220

ATGGCGAAGAAGAGCGTGTATCTTCCGGAGGACGTGATAAAGGAAATCATGCTGAGGTTGCCGGTGAAATCTGTACTACGCTGCAAGTGTGTCTGTAAGTTATGGCTTTCTATCATCTCTCGTCCTCACTTTGCTAATTCACATTTTCAACTTGCTGCCTCACCCACACATAGACTTATGATCCTCGGAGCTCGTCATGCTTTCAAAGCTTATGATCCTCAAATCCTATCCGTAGATTTTAATGCATCACTTAACGATGATTCTGCTTATCATTCACCAAGCCTTGATTTTTTGCCTCGCCTAGATTTTCTTGCAATTAGAGCCTATGGAATCCATCCACCCGTGTCAGCAAACAAATACCTATGTCTCCTATAGCTCTTCCCAATGATGAGCATATTCTCAACTTTCTGTATGGCTTGGCATACCAACCCTCAACTGATGATTACTTACTTTGATCCAGTATCTAATTCGATTGACTTGGAGATTTTCTCTTTGAGAGCTGATAAGTGGAAACAAGTTAAGTTCGATTCTCATTTACCTTATGAGAATCTTGATAACTTCAATGAACTAGGTGAGAATCTTGATAAGTTCAATTCATTGGCTGGTTTATAACTATGACTCTATGAGACCAAAATGTTTGTTATTATTGCCTTTGATTTAAAGGAAAGATGATTTTGAAAATTGTGGAGAATATGCAGAATATGATATGTTTGTGTTTGGAGGACTCATCAGTGCATGGATTGTGGACTTCGATACAGTTAAGATATGGGTGATGAATGAATATGCAGTGGATTCATCTTGGACTCAGACTCTTGTTTTTGATAGGCATTCTGCTCCGGAATTTTTGCCAATATCCTTTACAAATTGTGGTGACATAGTTGGAATTGATCGTGAGGTTGGATTGGTGATGTTTAATGACAAAGGAGAGATGATAGAACATCACTCCATTATTTCAGAAAGACCCCTAATGGGAGTGTATACAGAGTCTCTGCTTTCACTACCTGATGGCGGTGAGCAAGCTGAAGAAGAAGATGACTAG
Protein sequence

>MS.gene016220.t1

MAKKSVYLPEDVIKEIMLRLPVKSVLRCKCVCKLWLSIISRPHFANSHFQLAASPTHRLMILGARHAFKAYDPQILSVDFNASLNDDSAYHSPSLDFLPRLDFLAIRAYGIHPPVKDDFENCGEYAEYDMFVFGGLISAWIVDFDTVKIWVMNEYAVDSSWTQTLVFDRHSAPEFLPISFTNCGDIVGIDREVGLVMFNDKGEMIEHHSIISERPLMGVYTESLLSLPDGGEQAEEEDD