AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene033875

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033875.t1 MTR_2g048580 67.247 287 46 3 1 240 4 289 2.70e-126 362
MS.gene033875.t1 MTR_7g079370 50.794 189 87 2 50 234 106 292 1.39e-57 187
MS.gene033875.t1 MTR_7g079400 46.320 231 90 6 32 235 47 270 2.72e-55 181
MS.gene033875.t1 MTR_8g102520 59.880 167 56 4 78 240 102 261 8.69e-53 174
MS.gene033875.t1 MTR_7g079420 69.492 118 35 1 124 240 965 1082 5.95e-47 167
MS.gene033875.t1 MTR_8g098830 56.716 134 53 2 106 235 32 164 7.29e-45 150
MS.gene033875.t1 MTR_4g117720 46.711 152 67 7 78 227 157 296 2.07e-28 111
MS.gene033875.t1 MTR_3g034130 29.470 302 130 10 2 227 6 300 2.62e-28 110
MS.gene033875.t1 MTR_4g109280 31.119 286 125 7 4 227 7 282 4.18e-28 110
MS.gene033875.t1 MTR_3g034160 28.477 302 131 10 2 226 6 299 9.49e-28 109
MS.gene033875.t1 MTR_8g433030 36.047 258 128 11 2 238 37 278 1.62e-27 108
MS.gene033875.t1 MTR_3g034180 30.000 300 129 9 3 227 121 414 3.05e-27 109
MS.gene033875.t1 MTR_4g023130 30.888 259 119 9 3 227 7 239 2.30e-26 104
MS.gene033875.t1 MTR_6g060650 42.000 150 76 4 78 227 159 297 8.03e-26 104
MS.gene033875.t1 MTR_4g118380 41.509 159 73 5 78 227 161 308 1.52e-25 103
MS.gene033875.t1 MTR_8g032390 32.759 290 127 14 2 238 37 311 4.12e-24 99.8
MS.gene033875.t1 MTR_4g117850 40.625 160 82 6 73 227 152 303 2.66e-23 97.4
MS.gene033875.t1 MTR_1g055175 41.129 124 69 2 105 227 5 125 1.00e-22 92.4
MS.gene033875.t1 MTR_4g117750 37.037 162 88 3 73 226 129 284 2.81e-22 95.5
MS.gene033875.t1 MTR_4g023120 37.500 152 85 5 78 227 141 284 8.01e-22 93.2
MS.gene033875.t1 MTR_4g023080 36.184 152 77 4 78 227 147 280 8.72e-22 92.8
MS.gene033875.t1 MTR_4g118370 39.241 158 66 5 73 226 54 185 9.76e-22 91.3
MS.gene033875.t1 MTR_7g079450 61.333 75 20 2 162 232 2 71 3.49e-21 86.7
MS.gene033875.t1 MTR_5g097210 38.667 150 86 4 78 227 145 288 4.85e-21 91.3
MS.gene033875.t1 MTR_4g023070 36.842 152 86 5 78 227 141 284 1.16e-20 90.1
MS.gene033875.t1 MTR_4g116320 41.611 149 68 7 85 227 47 182 2.64e-20 87.4
MS.gene033875.t1 MTR_4g023090 28.239 301 119 13 4 226 15 296 6.28e-20 88.2
MS.gene033875.t1 MTR_1g055135 29.252 294 133 11 4 227 12 300 6.50e-20 87.8
MS.gene033875.t1 MTR_4g116330 29.153 295 124 11 4 227 22 302 7.61e-20 87.8
MS.gene033875.t1 MTR_5g070088 35.484 155 91 4 75 227 162 309 2.32e-19 86.7
MS.gene033875.t1 MTR_1g055195 36.943 157 82 3 75 227 261 404 2.67e-19 87.0
MS.gene033875.t1 MTR_4g118400 41.803 122 52 4 106 227 122 224 5.47e-19 84.3
MS.gene033875.t1 MTR_4g021785 32.716 162 86 6 70 227 139 281 1.08e-18 84.3
MS.gene033875.t1 MTR_4g117770 37.500 152 82 4 78 227 151 291 1.09e-18 84.3
MS.gene033875.t1 MTR_4g117810 37.500 152 82 4 78 227 151 291 1.09e-18 84.3
MS.gene033875.t1 MTR_3g103020 38.710 155 77 7 78 226 159 301 1.15e-18 84.3
MS.gene033875.t1 MTR_4g109270 37.736 159 69 7 75 227 154 288 4.19e-18 82.8
MS.gene033875.t1 MTR_1g055165 31.518 257 120 11 4 227 9 242 1.32e-17 80.9
MS.gene033875.t1 MTR_1g055250 37.662 154 82 6 78 227 51 194 2.06e-17 80.5
MS.gene033875.t1 MTR_4g117780 36.184 152 84 5 78 227 151 291 4.60e-17 79.7
MS.gene033875.t1 MTR_5g070080 34.395 157 87 6 75 227 166 310 6.29e-17 79.7
MS.gene033875.t1 MTR_4g094365 35.065 154 82 8 78 227 150 289 1.45e-16 78.6
MS.gene033875.t1 MTR_5g070130 25.926 297 141 10 4 227 10 300 2.53e-16 77.8
MS.gene033875.t1 MTR_6g463430 40.833 120 66 4 109 227 16 131 3.64e-16 75.1
MS.gene033875.t1 MTR_4g117430 38.393 112 48 4 75 183 41 134 1.35e-15 72.4
MS.gene033875.t1 MTR_4g023190 32.237 152 84 5 78 227 149 283 6.35e-15 73.6
MS.gene033875.t1 MTR_8g013010 39.370 127 62 6 78 204 198 309 2.66e-14 71.6
MS.gene033875.t1 MTR_4g133170 29.268 164 97 8 78 236 145 294 4.80e-14 71.2
MS.gene033875.t1 MTR_8g040935 34.959 123 70 6 109 227 14 130 1.17e-13 68.2
MS.gene033875.t1 MTR_4g023380 28.070 228 125 9 28 226 85 302 2.84e-13 68.9
MS.gene033875.t1 MTR_6g034720 41.667 96 50 2 78 173 75 164 1.26e-12 65.5
MS.gene033875.t1 MTR_4g023150 30.263 152 88 5 78 227 149 284 4.31e-12 65.5
MS.gene033875.t1 MTR_3g009310 28.415 183 109 5 70 250 182 344 5.19e-12 65.5
MS.gene033875.t1 MTR_4g023200 28.947 152 90 6 78 227 149 284 7.10e-12 64.7
MS.gene033875.t1 MTR_7g022670 27.941 272 154 9 5 246 23 282 8.16e-12 64.7
MS.gene033875.t1 MTR_3g024150 23.026 304 161 10 12 251 42 336 7.86e-11 61.6
MS.gene033875.t1 MTR_3g083660 27.679 224 118 9 5 227 25 205 8.55e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 60 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATTACCCTTGATTTAA+AGG 0.095558 2.2:-38447589 MS.gene033875:CDS
CTAGAACCTTTAATTATTTC+AGG 0.101146 2.2:+38448058 None:intergenic
CGATGATTACTTGGTAGTTT+TGG 0.188990 2.2:-38447826 MS.gene033875:CDS
GAACCTTCCTTGTTAATTTA+CGG 0.232045 2.2:-38447890 MS.gene033875:CDS
TCCCACCCTGAAATAATTAA+AGG 0.270077 2.2:-38448064 MS.gene033875:intron
CGGTGTATGGGTTGCAAATA+GGG 0.299972 2.2:-38447472 MS.gene033875:CDS
AGAGTCGGGTCGTTCTTAAA+TGG 0.304258 2.2:-38447657 MS.gene033875:CDS
TACAATTTGTAAAGCATGTT+GGG 0.319355 2.2:+38447359 None:intergenic
TCGGTGTATGGGTTGCAAAT+AGG 0.321529 2.2:-38447473 MS.gene033875:CDS
TTGGTACTTAACGGGCTTAT+CGG 0.345330 2.2:-38447492 MS.gene033875:CDS
TAGGCATCAGTAAAGATATA+AGG 0.367778 2.2:+38447693 None:intergenic
TATCAAGTTTCTGTATGCTT+TGG 0.371722 2.2:-38447918 MS.gene033875:intron
ATGAATTTCGTCCCAGAGTC+GGG 0.376536 2.2:-38447671 MS.gene033875:CDS
TTTACAAATTGTAATGGAAA+TGG 0.381164 2.2:-38447349 MS.gene033875:CDS
TTTGATGTGTTGGTACTTAA+CGG 0.382004 2.2:-38447501 MS.gene033875:CDS
GAGTCGGGTCGTTCTTAAAT+GGG 0.384131 2.2:-38447656 MS.gene033875:CDS
TCTTAAATGGGGCTATTCAT+TGG 0.392702 2.2:-38447644 MS.gene033875:CDS
TTAACGGGCTTATCGGTGTA+TGG 0.395755 2.2:-38447485 MS.gene033875:CDS
AAGGTGATCATCAGCTTTGT+AGG 0.396319 2.2:+38447800 None:intergenic
TTCATAATTCTGAGACCAAC+CGG 0.413642 2.2:-38447617 MS.gene033875:CDS
TTGATGTGTTGGTACTTAAC+GGG 0.415233 2.2:-38447500 MS.gene033875:CDS
TTGTTGTTTCCTTTAAATCA+AGG 0.418824 2.2:+38447580 None:intergenic
AAATGGGGCTATTCATTGGC+TGG 0.420296 2.2:-38447640 MS.gene033875:CDS
AGAAACCCTTCTGAGGTTGC+CGG 0.429009 2.2:-38448305 MS.gene033875:CDS
AAGTCAATTGAACTAGATAT+AGG 0.430509 2.2:+38447774 None:intergenic
ACATGCTTTACAAATTGTAA+TGG 0.433490 2.2:-38447355 MS.gene033875:CDS
TAAAGAATATTATAATCATC+TGG 0.433591 2.2:+38447540 None:intergenic
ATAGGGTTACAGTTAAGATA+TGG 0.440769 2.2:-38447455 MS.gene033875:CDS
TAGAACCTTTAATTATTTCA+GGG 0.452197 2.2:+38448059 None:intergenic
TCTCATTGAGAGCTAATAAG+TGG 0.462649 2.2:-38447743 MS.gene033875:CDS
ATTTAAGAACGACCCGACTC+TGG 0.471493 2.2:+38447659 None:intergenic
TCGTTTAGAATTTGATGTGT+TGG 0.479181 2.2:-38447511 MS.gene033875:CDS
AAATCATTGTCTTGAGGAGC+GGG 0.479328 2.2:+38447384 None:intergenic
ACCTTTAATTATTTCAGGGT+GGG 0.480387 2.2:+38448063 None:intergenic
AATACGCTGTCCATTCATCT+TGG 0.492171 2.2:-38447422 MS.gene033875:CDS
TGTTGTTTCCTTTAAATCAA+GGG 0.498640 2.2:+38447581 None:intergenic
GACTCTGGGACGAAATTCAT+AGG 0.508358 2.2:+38447674 None:intergenic
TAATTATTTCAGGGTGGGAT+CGG 0.510370 2.2:+38448068 None:intergenic
TATATCTAGTTCAATTGACT+TGG 0.510927 2.2:-38447772 MS.gene033875:CDS
TCTTCACCGGCAACCTCAGA+AGG 0.514011 2.2:+38448299 None:intergenic
TTACAATTTGTAAAGCATGT+TGG 0.518113 2.2:+38447358 None:intergenic
TTTAAGAACGACCCGACTCT+GGG 0.520429 2.2:+38447660 None:intergenic
ATCGGTGAGGCTTAAAATCA+AGG 0.521302 2.2:+38448086 None:intergenic
TAACGGGCTTATCGGTGTAT+GGG 0.545449 2.2:-38447484 MS.gene033875:CDS
TATGAATTTCGTCCCAGAGT+CGG 0.550425 2.2:-38447672 MS.gene033875:CDS
AATCCGTAAATTAACAAGGA+AGG 0.564297 2.2:+38447887 None:intergenic
GGTAATAATAACATCCCGGT+TGG 0.582103 2.2:+38447602 None:intergenic
TGAAGACTTTACTACGCTGC+AGG 0.583980 2.2:-38448282 MS.gene033875:CDS
CAGCGTAGTAAAGTCTTCAC+CGG 0.584054 2.2:+38448286 None:intergenic
AACCTTTAATTATTTCAGGG+TGG 0.590371 2.2:+38448062 None:intergenic
TAATAAGTGGAAACAAATTG+AGG 0.602410 2.2:-38447730 MS.gene033875:CDS
CAAGGGTAATAATAACATCC+CGG 0.606501 2.2:+38447598 None:intergenic
TCATAATTCTGAGACCAACC+GGG 0.620102 2.2:-38447616 MS.gene033875:CDS
AAAATCATTGTCTTGAGGAG+CGG 0.622924 2.2:+38447383 None:intergenic
CTTCACCGGCAACCTCAGAA+GGG 0.626969 2.2:+38448300 None:intergenic
TTGAACTAGATATAGGCTCA+AGG 0.633663 2.2:+38447781 None:intergenic
TGACAAAAGAAACCCTTCTG+AGG 0.636586 2.2:-38448312 MS.gene033875:CDS
AGTCGGGTCGTTCTTAAATG+GGG 0.668468 2.2:-38447655 MS.gene033875:CDS
ATTTCAGGGTGGGATCGGTG+AGG 0.670184 2.2:+38448073 None:intergenic
GTAAAATCCGTAAATTAACA+AGG 0.677587 2.2:+38447883 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGAATATTATAATCATC+TGG + chr2.2:38448144-38448163 None:intergenic 15.0%
!! TAGAACCTTTAATTATTTCA+GGG + chr2.2:38447625-38447644 None:intergenic 20.0%
!! TATTATTACCCTTGATTTAA+AGG - chr2.2:38448092-38448111 MS.gene033875:CDS 20.0%
!!! CTTTTTTAGTGAAAGAAAAA+GGG + chr2.2:38447834-38447853 None:intergenic 20.0%
!!! TCTTTTTTAGTGAAAGAAAA+AGG + chr2.2:38447835-38447854 None:intergenic 20.0%
!!! TTTACAAATTGTAATGGAAA+TGG - chr2.2:38448332-38448351 MS.gene033875:CDS 20.0%
! AAATGTGAAGATGAAAAATG+TGG + chr2.2:38447461-38447480 None:intergenic 25.0%
! AAGTCAATTGAACTAGATAT+AGG + chr2.2:38447910-38447929 None:intergenic 25.0%
! AATTCATTGACAAGAGTTAT+AGG + chr2.2:38447737-38447756 None:intergenic 25.0%
! ACATGCTTTACAAATTGTAA+TGG - chr2.2:38448326-38448345 MS.gene033875:CDS 25.0%
! ATCATCATCGTTAAAATCTA+TGG + chr2.2:38447555-38447574 None:intergenic 25.0%
! ATCGTTAAAATCTATGGATA+GGG + chr2.2:38447549-38447568 None:intergenic 25.0%
! CTAGAACCTTTAATTATTTC+AGG + chr2.2:38447626-38447645 None:intergenic 25.0%
! CTTCTATTATTGAACTGTTA+CGG - chr2.2:38447656-38447675 MS.gene033875:CDS 25.0%
! GTAAAATCCGTAAATTAACA+AGG + chr2.2:38447801-38447820 None:intergenic 25.0%
! TAAAAAAGACGATGATTACT+TGG - chr2.2:38447846-38447865 MS.gene033875:CDS 25.0%
! TAATAAGTGGAAACAAATTG+AGG - chr2.2:38447951-38447970 MS.gene033875:intron 25.0%
! TACAATTTGTAAAGCATGTT+GGG + chr2.2:38448325-38448344 None:intergenic 25.0%
! TATAAAAAGTCCAAGATGAA+TGG + chr2.2:38448272-38448291 None:intergenic 25.0%
! TTACAATTTGTAAAGCATGT+TGG + chr2.2:38448326-38448345 None:intergenic 25.0%
!! ATAATTAAAGGTTCTAGTAG+AGG - chr2.2:38447629-38447648 MS.gene033875:CDS 25.0%
!! TAATTAAAGGTTCTAGTAGA+GGG - chr2.2:38447630-38447649 MS.gene033875:CDS 25.0%
!! TATATCTAGTTCAATTGACT+TGG - chr2.2:38447909-38447928 MS.gene033875:CDS 25.0%
!!! AAGACCATTATTTTATGTGT+GGG + chr2.2:38447500-38447519 None:intergenic 25.0%
!!! TGTTGTTTCCTTTAAATCAA+GGG + chr2.2:38448103-38448122 None:intergenic 25.0%
!!! TTGTTGTTTCCTTTAAATCA+AGG + chr2.2:38448104-38448123 None:intergenic 25.0%
AACCTTTAATTATTTCAGGG+TGG + chr2.2:38447622-38447641 None:intergenic 30.0%
AATCCGTAAATTAACAAGGA+AGG + chr2.2:38447797-38447816 None:intergenic 30.0%
ACCTTTAATTATTTCAGGGT+GGG + chr2.2:38447621-38447640 None:intergenic 30.0%
ATAGGGTTACAGTTAAGATA+TGG - chr2.2:38448226-38448245 MS.gene033875:intron 30.0%
CATCGTTAAAATCTATGGAT+AGG + chr2.2:38447550-38447569 None:intergenic 30.0%
GAACCTTCCTTGTTAATTTA+CGG - chr2.2:38447791-38447810 MS.gene033875:CDS 30.0%
TAGGCATCAGTAAAGATATA+AGG + chr2.2:38447991-38448010 None:intergenic 30.0%
TATCAAGTTTCTGTATGCTT+TGG - chr2.2:38447763-38447782 MS.gene033875:CDS 30.0%
TCGTTAAAATCTATGGATAG+GGG + chr2.2:38447548-38447567 None:intergenic 30.0%
! TCGTTTAGAATTTGATGTGT+TGG - chr2.2:38448170-38448189 MS.gene033875:intron 30.0%
! TTTGATGTGTTGGTACTTAA+CGG - chr2.2:38448180-38448199 MS.gene033875:intron 30.0%
!! ATGATTACTTGGTAGTTTTG+GGG - chr2.2:38447857-38447876 MS.gene033875:CDS 30.0%
!! GAAGACCATTATTTTATGTG+TGG + chr2.2:38447501-38447520 None:intergenic 30.0%
!! GATGATTACTTGGTAGTTTT+GGG - chr2.2:38447856-38447875 MS.gene033875:CDS 30.0%
!!! TAGGAGACTTAGGTATTTTT+TGG + chr2.2:38447718-38447737 None:intergenic 30.0%
AAAATCATTGTCTTGAGGAG+CGG + chr2.2:38448301-38448320 None:intergenic 35.0%
ACAAGAGTTATAGGAGACTT+AGG + chr2.2:38447728-38447747 None:intergenic 35.0%
CAAGGGTAATAATAACATCC+CGG + chr2.2:38448086-38448105 None:intergenic 35.0%
CTCTCCCACACATAAAATAA+TGG - chr2.2:38447493-38447512 MS.gene033875:CDS 35.0%
TAATTATTTCAGGGTGGGAT+CGG + chr2.2:38447616-38447635 None:intergenic 35.0%
TCCCACCCTGAAATAATTAA+AGG - chr2.2:38447617-38447636 MS.gene033875:CDS 35.0%
TCTCATTGAGAGCTAATAAG+TGG - chr2.2:38447938-38447957 MS.gene033875:intron 35.0%
TCTTAAATGGGGCTATTCAT+TGG - chr2.2:38448037-38448056 MS.gene033875:intron 35.0%
TGGGAAAAATCATTGTCTTG+AGG + chr2.2:38448306-38448325 None:intergenic 35.0%
TTGAACTAGATATAGGCTCA+AGG + chr2.2:38447903-38447922 None:intergenic 35.0%
! TTGATGTGTTGGTACTTAAC+GGG - chr2.2:38448181-38448200 MS.gene033875:intron 35.0%
!! CATTATTTTATGTGTGGGAG+AGG + chr2.2:38447495-38447514 None:intergenic 35.0%
!! CGATGATTACTTGGTAGTTT+TGG - chr2.2:38447855-38447874 MS.gene033875:CDS 35.0%
!! GTTTCTTTTGTCACTTCTTC+AGG + chr2.2:38447362-38447381 None:intergenic 35.0%
!! TTCATAATTCTGAGACCAAC+CGG - chr2.2:38448064-38448083 MS.gene033875:intron 35.0%
!!! AGGTATTTTTTGGATGAGAC+CGG + chr2.2:38447708-38447727 None:intergenic 35.0%
AAATCATTGTCTTGAGGAGC+GGG + chr2.2:38448300-38448319 None:intergenic 40.0%
AATACGCTGTCCATTCATCT+TGG - chr2.2:38448259-38448278 MS.gene033875:intron 40.0%
ATCGGTGAGGCTTAAAATCA+AGG + chr2.2:38447598-38447617 None:intergenic 40.0%
GGTAATAATAACATCCCGGT+TGG + chr2.2:38448082-38448101 None:intergenic 40.0%
TATGAATTTCGTCCCAGAGT+CGG - chr2.2:38448009-38448028 MS.gene033875:intron 40.0%
TGACAAAAGAAACCCTTCTG+AGG - chr2.2:38447369-38447388 MS.gene033875:CDS 40.0%
! AAGGTGATCATCAGCTTTGT+AGG + chr2.2:38447884-38447903 None:intergenic 40.0%
!! TCATAATTCTGAGACCAACC+GGG - chr2.2:38448065-38448084 MS.gene033875:CDS 40.0%
!! TTGGTACTTAACGGGCTTAT+CGG - chr2.2:38448189-38448208 MS.gene033875:intron 40.0%
!!! TATTTTTTGGATGAGACCGG+TGG + chr2.2:38447705-38447724 None:intergenic 40.0%
AAATGGGGCTATTCATTGGC+TGG - chr2.2:38448041-38448060 MS.gene033875:intron 45.0%
AGAGTCGGGTCGTTCTTAAA+TGG - chr2.2:38448024-38448043 MS.gene033875:intron 45.0%
AGTCGGGTCGTTCTTAAATG+GGG - chr2.2:38448026-38448045 MS.gene033875:intron 45.0%
ATGAATTTCGTCCCAGAGTC+GGG - chr2.2:38448010-38448029 MS.gene033875:intron 45.0%
ATTTAAGAACGACCCGACTC+TGG + chr2.2:38448025-38448044 None:intergenic 45.0%
CAGCGTAGTAAAGTCTTCAC+CGG + chr2.2:38447398-38447417 None:intergenic 45.0%
GAGTCGGGTCGTTCTTAAAT+GGG - chr2.2:38448025-38448044 MS.gene033875:intron 45.0%
GCAGGTGTGTCTGTAAGTTA+TGG - chr2.2:38447417-38447436 MS.gene033875:CDS 45.0%
TGAAGACTTTACTACGCTGC+AGG - chr2.2:38447399-38447418 MS.gene033875:CDS 45.0%
TTTAAGAACGACCCGACTCT+GGG + chr2.2:38448024-38448043 None:intergenic 45.0%
! CGGTGTATGGGTTGCAAATA+GGG - chr2.2:38448209-38448228 MS.gene033875:intron 45.0%
! TCGGTGTATGGGTTGCAAAT+AGG - chr2.2:38448208-38448227 MS.gene033875:intron 45.0%
!! GACTCTGGGACGAAATTCAT+AGG + chr2.2:38448010-38448029 None:intergenic 45.0%
!! TAACGGGCTTATCGGTGTAT+GGG - chr2.2:38448197-38448216 MS.gene033875:intron 45.0%
!! TTAACGGGCTTATCGGTGTA+TGG - chr2.2:38448196-38448215 MS.gene033875:intron 45.0%
TACCTGTGGAATCCAACCAC+CGG - chr2.2:38447686-38447705 MS.gene033875:CDS 50.0%
TGGTTGGATTCCACAGGTAG+AGG + chr2.2:38447685-38447704 None:intergenic 50.0%
! TTTTGGATGAGACCGGTGGT+TGG + chr2.2:38447701-38447720 None:intergenic 50.0%
!! AGAAACCCTTCTGAGGTTGC+CGG - chr2.2:38447376-38447395 MS.gene033875:CDS 50.0%
ATTTCAGGGTGGGATCGGTG+AGG + chr2.2:38447611-38447630 None:intergenic 55.0%
CTTCACCGGCAACCTCAGAA+GGG + chr2.2:38447384-38447403 None:intergenic 55.0%
GTTACGGTTGCCTCTACCTG+TGG - chr2.2:38447672-38447691 MS.gene033875:CDS 55.0%
TCTTCACCGGCAACCTCAGA+AGG + chr2.2:38447385-38447404 None:intergenic 55.0%
GACCGGTGGTTGGATTCCAC+AGG + chr2.2:38447691-38447710 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 38447344 38448359 38447344 ID=MS.gene033875
chr2.2 mRNA 38447344 38448359 38447344 ID=MS.gene033875.t1;Parent=MS.gene033875
chr2.2 exon 38448275 38448359 38448275 ID=MS.gene033875.t1.exon1;Parent=MS.gene033875.t1
chr2.2 CDS 38448275 38448359 38448275 ID=cds.MS.gene033875.t1;Parent=MS.gene033875.t1
chr2.2 exon 38448065 38448145 38448065 ID=MS.gene033875.t1.exon2;Parent=MS.gene033875.t1
chr2.2 CDS 38448065 38448145 38448065 ID=cds.MS.gene033875.t1;Parent=MS.gene033875.t1
chr2.2 exon 38447344 38447933 38447344 ID=MS.gene033875.t1.exon3;Parent=MS.gene033875.t1
chr2.2 CDS 38447344 38447933 38447344 ID=cds.MS.gene033875.t1;Parent=MS.gene033875.t1
Gene Sequence

>MS.gene033875

ATGAGCGTGTATCTGCCTGAAGAAGTGACAAAAGAAACCCTTCTGAGGTTGCCGGTGAAGACTTTACTACGCTGCAGGTGTGTCTGTAAGTTATGGCTTTCTATCATCTCTCATCCACATTTTTCATCTTCACATTTTCAACTTGCTGCCTCTCCCACACATAAAATAATGGTCTTCAAAGTTGCTGCTTATTTTACTCAACCCCTATCCATAGATTTTAACGATGATGATTCTTCTTATCGTTCACTAAGCCTTGATTTTAAGCCTCACCGATCCCACCCTGAAATAATTAAAGGTTCTAGTAGAGGGTTTCTTCTATTATTGAACTGTTACGGTTGCCTCTACCTGTGGAATCCAACCACCGGTCTCATCCAAAAAATACCTAAGTCTCCTATAACTCTTGTCAATGAATTTCATATTATCAAGTTTCTGTATGCTTTGGCATACGAACCTTCCTTGTTAATTTACGGATTTTACTCGTTTTTGACCCTTTTTCTTTCACTAAAAAAGACGATGATTACTTGGTAGTTTTGGGGTCCTACAAAGCTGATGATCACCTTGAGCCTATATCTAGTTCAATTGACTTGGAGATTTTCTCATTGAGAGCTAATAAGTGGAAACAAATTGAGGTTACTTCTCATTTGCCTTATATCTTTACTGATGCCTATGAATTTCGTCCCAGAGTCGGGTCGTTCTTAAATGGGGCTATTCATTGGCTGGTTCATAATTCTGAGACCAACCGGGATGTTATTATTACCCTTGATTTAAAGGAAACAACAATGTCTGAGATAGCTCTTCCAGATGATTATAATATTCTTTATGCTTCTCGTTTAGAATTTGATGTGTTGGTACTTAACGGGCTTATCGGTGTATGGGTTGCAAATAGGGTTACAGTTAAGATATGGATGATGCAAGAATACGCTGTCCATTCATCTTGGACTTTTTATATGCATCCCGCTCCTCAAGACAATGATTTTTCCCAACATGCTTTACAAATTGTAATGGAAATGGATTGA
Protein sequence

>MS.gene033875.t1

MSVYLPEEVTKETLLRLPVKTLLRCRCVYFNDDDSSYRSLSLDFKPHRSHPEIIKVSVCFGIRTFLVNLRILLVFDPFSFTKKDDDYLVVLGSYKADDHLEPISSSIDLEIFSLRANKWKQIEVTSHLPYIFTDAYEFRPRVGSFLNGAIHWLVHNSETNRDVIITLDLKETTMSEIALPDDYNILYASRLEFDVLVLNGLIGVWVANRVTVKIWMMQEYAVHSSWTFYMHPAPQDNDFSQHALQIVMEMD