AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0612150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0612150 MtrunA17_Chr4g0045941 96.307 352 13 0 1 352 1 352 0.0 707
Msa0612150 MtrunA17_Chr4g0045951 82.967 364 50 1 1 352 1 364 0.0 624
Msa0612150 MtrunA17_Chr2g0283581 70.914 361 95 3 1 352 1 360 0.0 524
Msa0612150 MtrunA17_Chr2g0325481 60.062 323 126 2 30 351 47 367 2.04e-147 420
Msa0612150 MtrunA17_Chr4g0041011 58.567 321 132 1 30 350 44 363 1.19e-139 400
Msa0612150 MtrunA17_Chr3g0097891 53.623 345 157 3 10 351 7 351 1.36e-135 390
Msa0612150 MtrunA17_Chr2g0314801 52.770 343 156 4 10 346 7 349 8.48e-130 375
Msa0612150 MtrunA17_Chr3g0085081 50.737 339 162 3 16 350 11 348 1.13e-125 364
Msa0612150 MtrunA17_Chr3g0085071 51.553 322 154 2 30 350 43 363 2.66e-125 364
Msa0612150 MtrunA17_Chr5g0413851 50.284 352 166 4 7 351 11 360 8.99e-125 363
Msa0612150 MtrunA17_Chr3g0091031 49.112 338 167 3 14 350 15 348 5.93e-124 360
Msa0612150 MtrunA17_Chr3g0105301 49.565 345 158 4 23 351 33 377 5.10e-119 348
Msa0612150 MtrunA17_Chr5g0430371 49.580 357 152 6 23 351 44 400 1.68e-117 345
Msa0612150 MtrunA17_Chr2g0314791 45.278 360 174 9 1 351 1 346 1.71e-106 315
Msa0612150 MtrunA17_Chr1g0175671 38.776 343 186 6 33 352 170 511 2.37e-89 278
Msa0612150 MtrunA17_Chr1g0171171 40.060 332 182 5 30 350 50 375 9.97e-88 269
Msa0612150 MtrunA17_Chr7g0258851 39.942 343 182 6 33 352 248 589 1.55e-87 275
Msa0612150 MtrunA17_Chr4g0068111 39.773 352 182 9 27 352 108 455 5.19e-85 265
Msa0612150 MtrunA17_Chr4g0071391 37.243 341 192 5 33 352 109 448 1.28e-81 255
Msa0612150 MtrunA17_Chr1g0210771 35.447 347 198 7 20 350 46 382 1.01e-80 251
Msa0612150 MtrunA17_Chr1g0213281 37.101 345 192 7 31 351 173 516 1.85e-79 252
Msa0612150 MtrunA17_Chr5g0413271 36.795 337 191 5 33 351 145 477 1.62e-78 248
Msa0612150 MtrunA17_Chr4g0006991 36.550 342 193 7 33 350 86 427 4.67e-76 240
Msa0612150 MtrunA17_Chr8g0368461 35.657 373 199 10 19 351 158 529 2.04e-75 242
Msa0612150 MtrunA17_Chr3g0113671 36.782 348 190 8 32 351 105 450 1.09e-74 238
Msa0612150 MtrunA17_Chr7g0269991 38.298 329 186 7 33 346 137 463 2.69e-73 234
Msa0612150 MtrunA17_Chr5g0437291 37.110 353 185 11 32 351 164 512 1.20e-71 231
Msa0612150 MtrunA17_Chr4g0005491 34.659 352 202 8 27 350 56 407 5.35e-70 224
Msa0612150 MtrunA17_Chr3g0114101 34.402 343 201 8 33 351 89 431 4.15e-69 223
Msa0612150 MtrunA17_Chr8g0360521 35.260 346 197 8 30 351 68 410 4.34e-69 222
Msa0612150 MtrunA17_Chr7g0243301 35.530 349 197 9 30 350 61 409 1.70e-67 218
Msa0612150 MtrunA17_Chr1g0209921 45.217 230 119 6 30 255 41 267 2.33e-67 213
Msa0612150 MtrunA17_Chr7g0242701 35.652 345 198 7 30 350 83 427 6.15e-67 217
Msa0612150 MtrunA17_Chr3g0126021 37.714 350 189 9 25 351 117 460 1.65e-66 217
Msa0612150 MtrunA17_Chr2g0287901 33.908 348 205 8 28 351 92 438 2.54e-65 213
Msa0612150 MtrunA17_Chr7g0259711 35.328 351 199 9 27 351 85 433 2.90e-65 213
Msa0612150 MtrunA17_Chr5g0437601 33.048 351 211 8 25 351 75 425 2.94e-64 210
Msa0612150 MtrunA17_Chr4g0005481 34.203 345 200 9 26 346 101 442 2.83e-63 207
Msa0612150 MtrunA17_Chr8g0384151 33.731 335 199 7 33 351 90 417 5.67e-62 204
Msa0612150 MtrunA17_Chr1g0178081 30.400 375 181 10 3 351 22 342 7.60e-48 165
Msa0612150 MtrunA17_Chr5g0414061 30.145 345 206 11 30 343 91 431 4.37e-38 141
Msa0612150 MtrunA17_Chr6g0456681 30.894 369 208 12 15 346 46 404 9.46e-37 137
Msa0612150 MtrunA17_Chr6g0456691 29.060 351 213 8 32 352 77 421 4.09e-35 133
Msa0612150 MtrunA17_Chr5g0414091 30.029 343 207 10 32 343 84 424 1.45e-34 131
Msa0612150 MtrunA17_Chr4g0049421 28.490 351 214 13 33 351 48 393 5.67e-34 129
Msa0612150 MtrunA17_Chr3g0085101 55.660 106 46 1 217 321 1 106 7.56e-34 121
Msa0612150 MtrunA17_Chr6g0476041 27.688 372 209 12 20 346 154 510 2.39e-33 129
Msa0612150 MtrunA17_Chr8g0384421 29.513 349 214 11 29 350 129 472 5.75e-33 127
Msa0612150 MtrunA17_Chr1g0188191 28.045 353 206 12 33 346 234 577 1.28e-31 125
Msa0612150 MtrunA17_Chr4g0070341 30.471 361 211 16 24 350 117 471 2.33e-31 123
Msa0612150 MtrunA17_Chr8g0347321 29.363 361 198 15 33 351 95 440 2.48e-31 122
Msa0612150 MtrunA17_Chr5g0414051 28.291 357 198 16 33 346 75 416 2.47e-30 120
Msa0612150 MtrunA17_Chr2g0283851 28.022 364 213 15 22 346 43 396 5.82e-30 118
Msa0612150 MtrunA17_Chr5g0414041 26.744 344 221 9 33 346 87 429 1.15e-29 118
Msa0612150 MtrunA17_Chr6g0451321 28.333 360 214 14 24 350 109 457 4.25e-29 117
Msa0612150 MtrunA17_Chr3g0140371 27.299 348 214 13 31 346 16 356 1.23e-28 114
Msa0612150 MtrunA17_Chr7g0226991 26.801 347 216 11 33 346 57 398 2.34e-28 114
Msa0612150 MtrunA17_Chr8g0387921 26.346 353 226 9 30 351 71 420 1.60e-27 112
Msa0612150 MtrunA17_Chr8g0391481 27.049 366 220 13 21 346 10 368 2.65e-27 110
Msa0612150 MtrunA17_Chr6g0455901 27.557 352 215 12 29 346 67 412 1.20e-25 106
Msa0612150 MtrunA17_Chr1g0209931 51.685 89 39 2 264 351 8 93 4.09e-22 89.7
Msa0612150 MtrunA17_Chr7g0221271 35.433 127 82 0 33 159 79 205 7.94e-22 92.0
Msa0612150 MtrunA17_Chr5g0429211 44.444 108 53 2 60 161 162 268 1.22e-20 90.5
Msa0612150 MtrunA17_Chr7g0221291 40.217 92 55 0 30 121 76 167 5.49e-20 85.9
Msa0612150 MtrunA17_Chr2g0287931 29.600 125 74 3 93 203 2 126 2.23e-13 66.2
Msa0612150 MtrunA17_Chr2g0287911 45.161 62 27 1 27 88 55 109 8.96e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0612150 AT1G29050.1 65.165 333 114 2 21 352 49 380 3.34e-172 484
Msa0612150 AT2G34070.1 65.138 327 111 3 28 352 60 385 5.90e-166 468
Msa0612150 AT2G31110.2 53.652 356 157 1 3 350 7 362 5.55e-147 419
Msa0612150 AT2G42570.1 58.282 326 136 0 26 351 40 365 2.42e-145 416
Msa0612150 AT3G14850.2 53.560 323 145 3 28 346 29 350 4.73e-126 366
Msa0612150 AT2G30900.1 49.580 357 168 5 7 351 10 366 5.66e-123 358
Msa0612150 AT2G34070.2 66.667 252 81 3 103 352 1 251 1.32e-122 353
Msa0612150 AT1G78710.1 47.706 327 166 4 28 351 33 357 2.44e-118 347
Msa0612150 AT5G58600.1 50.000 338 152 5 31 351 64 401 1.88e-114 338
Msa0612150 AT2G30010.1 46.499 357 163 6 23 351 41 397 5.55e-107 319
Msa0612150 AT2G30010.2 46.499 357 163 6 23 351 84 440 1.20e-106 320
Msa0612150 AT2G31110.3 52.157 255 114 1 3 249 7 261 4.07e-99 294
Msa0612150 AT3G14850.1 54.839 248 107 3 103 346 1 247 1.21e-94 282
Msa0612150 AT2G31110.1 58.937 207 85 0 144 350 8 214 1.46e-92 276
Msa0612150 AT5G06700.1 40.116 344 182 6 32 352 254 596 1.98e-88 278
Msa0612150 AT3G12060.1 40.116 344 182 6 32 352 195 537 3.83e-86 270
Msa0612150 AT2G30900.2 49.421 259 122 3 7 256 10 268 5.58e-86 261
Msa0612150 AT1G78710.2 40.061 327 138 5 28 351 26 297 7.00e-85 259
Msa0612150 AT3G54260.1 38.507 335 180 7 33 351 51 375 8.23e-84 259
Msa0612150 AT5G20590.1 37.006 354 200 6 21 352 129 481 5.07e-82 258
Msa0612150 AT5G58600.2 51.754 228 108 2 31 256 64 291 5.92e-82 251
Msa0612150 AT5G01360.2 36.812 345 193 7 31 350 34 378 5.51e-79 246
Msa0612150 AT5G49340.1 36.705 346 193 7 32 352 99 443 8.05e-79 249
Msa0612150 AT5G01360.1 36.812 345 193 7 31 350 90 434 1.94e-78 247
Msa0612150 AT1G60790.1 36.416 346 193 7 32 351 189 533 1.07e-75 243
Msa0612150 AT3G62390.1 37.719 342 193 8 28 351 133 472 8.63e-75 239
Msa0612150 AT1G73140.1 35.632 348 197 8 28 351 62 406 1.04e-70 226
Msa0612150 AT2G40150.1 34.930 355 195 9 31 351 69 421 1.56e-70 226
Msa0612150 AT5G19160.1 35.854 357 191 11 28 351 94 445 6.59e-70 226
Msa0612150 AT3G55990.1 35.817 349 194 9 31 351 138 484 1.79e-69 225
Msa0612150 AT3G11030.1 35.127 353 202 9 25 351 98 449 9.16e-69 223
Msa0612150 AT5G06230.2 33.811 349 203 7 30 351 18 365 4.44e-68 218
Msa0612150 AT1G48880.1 35.329 334 183 7 33 346 115 435 5.33e-68 220
Msa0612150 AT5G06230.1 33.811 349 203 7 30 351 59 406 1.07e-67 219
Msa0612150 AT3G06080.2 34.000 350 204 7 28 351 98 446 7.30e-67 218
Msa0612150 AT2G40160.1 34.384 349 198 9 33 351 77 424 2.22e-66 216
Msa0612150 AT2G40160.2 34.384 349 198 9 33 351 77 424 3.71e-66 215
Msa0612150 AT5G01620.2 33.524 349 205 9 23 346 99 445 1.71e-65 214
Msa0612150 AT5G01620.1 33.524 349 205 9 23 346 99 445 1.71e-65 214
Msa0612150 AT5G01620.3 33.524 349 205 9 23 346 107 453 1.97e-65 214
Msa0612150 AT2G40320.1 35.127 353 201 10 25 351 73 423 3.93e-65 212
Msa0612150 AT2G38320.1 33.429 347 203 8 33 351 59 405 3.98e-65 212
Msa0612150 AT3G11570.1 34.568 324 190 6 49 351 98 420 9.31e-65 211
Msa0612150 AT2G38320.2 31.975 319 190 7 60 351 4 322 1.51e-55 184
Msa0612150 AT5G20590.2 35.484 248 146 4 21 254 129 376 4.73e-52 177
Msa0612150 AT5G19160.2 35.270 241 142 5 28 254 94 334 2.14e-50 172
Msa0612150 AT3G62390.2 35.565 239 142 5 28 254 133 371 1.02e-48 169
Msa0612150 AT2G40160.3 33.333 234 144 4 33 254 77 310 3.07e-45 157
Msa0612150 AT3G06080.1 33.195 241 147 4 28 254 98 338 6.97e-44 155
Msa0612150 AT5G06230.3 31.579 247 149 4 30 256 59 305 8.14e-42 148
Msa0612150 AT5G64470.2 31.111 360 195 16 33 352 55 401 5.09e-37 138
Msa0612150 AT4G25360.1 29.888 358 207 12 27 346 169 520 8.98e-37 139
Msa0612150 AT4G25360.2 29.888 358 207 12 27 346 169 520 8.98e-37 139
Msa0612150 AT5G64470.3 30.028 353 202 14 33 352 55 395 2.21e-36 136
Msa0612150 AT5G51640.1 29.570 372 215 12 15 346 120 484 1.31e-35 135
Msa0612150 AT1G70230.1 28.487 337 210 12 33 346 79 407 4.79e-35 132
Msa0612150 AT1G01430.1 27.824 363 221 11 25 351 91 448 1.05e-34 132
Msa0612150 AT5G64020.1 29.050 358 208 12 33 350 57 408 1.16e-34 131
Msa0612150 AT2G37720.1 28.451 355 202 13 33 350 143 482 3.74e-32 125
Msa0612150 AT5G15900.1 27.049 366 232 9 15 350 49 409 3.47e-31 122
Msa0612150 AT5G15900.2 27.049 366 232 9 15 350 68 428 3.96e-31 122
Msa0612150 AT5G15890.1 27.684 354 223 10 20 346 171 518 4.78e-30 120
Msa0612150 AT3G02440.1 26.744 344 216 10 33 346 127 464 9.83e-30 119
Msa0612150 AT3G02440.2 26.744 344 216 10 33 346 135 472 1.17e-29 119
Msa0612150 AT5G20680.6 27.536 345 218 13 33 350 118 457 4.11e-29 117
Msa0612150 AT5G20680.2 27.536 345 218 13 33 350 194 533 6.56e-29 117
Msa0612150 AT5G20680.4 27.536 345 218 13 33 350 212 551 6.83e-29 117
Msa0612150 AT5G20680.1 27.536 345 218 13 33 350 212 551 6.83e-29 117
Msa0612150 AT5G20680.3 27.536 345 218 13 33 350 212 551 6.83e-29 117
Msa0612150 AT5G20680.5 27.536 345 218 13 33 350 212 551 6.83e-29 117
Msa0612150 AT3G28150.1 28.133 391 216 14 2 350 43 410 1.19e-28 115
Msa0612150 AT2G14530.1 27.809 356 214 12 30 350 59 406 2.75e-28 114
Msa0612150 AT4G01080.1 27.746 346 214 12 30 346 88 426 3.44e-27 111
Msa0612150 AT4G11090.1 27.298 359 210 13 33 351 79 426 3.85e-26 108
Msa0612150 AT4G23790.1 26.136 352 225 10 33 351 79 428 1.76e-23 100
Msa0612150 AT5G64470.4 28.125 256 148 9 33 262 55 300 1.70e-20 90.9
Msa0612150 AT5G64470.1 28.125 256 148 9 33 262 55 300 2.15e-20 90.9

Find 98 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATTGTAATTTGTTCTT+TGG 0.220399 4_2:+60588893 Msa0612150:CDS
TGAATTATGTCCACCAAATA+TGG 0.229373 4_2:-60591160 None:intergenic
AAAGCCATATGGTCCTATTT+TGG 0.230247 4_2:-60588788 None:intergenic
ACTATACCGTACACCATATT+TGG 0.252473 4_2:+60591147 Msa0612150:CDS
AATTTAATTACTATATATAT+TGG 0.269310 4_2:+60592217 Msa0612150:three_prime_UTR
TATTTAAGATACTGATTATC+AGG 0.276183 4_2:-60589007 None:intergenic
ACATGATTAGAGCTGCATTT+AGG 0.303593 4_2:-60592116 None:intergenic
ATTGACCACTTGGGCTGGTT+GGG 0.323556 4_2:+60591616 Msa0612150:CDS
AGGAGTATGTTCCAAGTATC+AGG 0.327240 4_2:-60592096 None:intergenic
TTGCTGGGTGCATGGATATA+AGG 0.329977 4_2:-60588856 None:intergenic
TTGTTCACTACATCATTTGC+AGG 0.336870 4_2:-60591934 None:intergenic
CAATGTCTACTGTCTTCTTC+CGG 0.356385 4_2:+60589453 Msa0612150:CDS
AAAACTAAACTCTTCTTTCA+AGG 0.357639 4_2:+60591662 Msa0612150:CDS
GGTGATATTGCGCAGGACTA+TGG 0.357643 4_2:+60591112 Msa0612150:intron
GCATGGATATAAGGAGATTT+AGG 0.362396 4_2:-60588847 None:intergenic
CGGGGAAGTTGAACCATTAC+CGG 0.374830 4_2:+60591885 Msa0612150:CDS
ATCAGTATCTTAAATACTCT+TGG 0.387106 4_2:+60589014 Msa0612150:CDS
GGATATGTGGTTCCCGGTAA+TGG 0.391578 4_2:-60591898 None:intergenic
TAATTTGTTCTTTGGAAGTT+GGG 0.393864 4_2:+60588901 Msa0612150:CDS
TTGAATCCAGAGGGCAAGAT+TGG 0.401256 4_2:+60591839 Msa0612150:intron
CTTGGTAAAGCACATGAATC+AGG 0.414998 4_2:-60589040 None:intergenic
TGTGAAATTAGAGTATATAT+TGG 0.416927 4_2:+60592136 Msa0612150:exon
AATGTCTACTGTCTTCTTCC+GGG 0.421225 4_2:+60589454 Msa0612150:CDS
AGTGAGGGACATGGACCGTT+TGG 0.425551 4_2:+60591577 Msa0612150:CDS
TCCCCGCTACATGTCTTCTT+CGG 0.430209 4_2:-60591868 None:intergenic
GTAATTTGTTCTTTGGAAGT+TGG 0.436573 4_2:+60588900 Msa0612150:CDS
GATTGACCACTTGGGCTGGT+TGG 0.439990 4_2:+60591615 Msa0612150:CDS
GAGAGAGCAAAGACAATGTA+TGG 0.447644 4_2:-60588817 None:intergenic
TTACTTACTTATTATGAGTA+GGG 0.455719 4_2:-60591691 None:intergenic
TTTCTGTGGTGTAGGTTCAA+TGG 0.457357 4_2:+60589290 Msa0612150:intron
TCTTCAACTCCTGGCATTGG+TGG 0.457794 4_2:+60591257 Msa0612150:CDS
TTTATAAGGGATTGACCACT+TGG 0.465985 4_2:+60591606 Msa0612150:CDS
ACATCATTTGCAGGAGGTAG+AGG 0.472593 4_2:-60591925 None:intergenic
TGTAGTCATTGGTGCCTACC+AGG 0.474740 4_2:+60592069 Msa0612150:CDS
TTGTGCTCTTGCTGGGTGCA+TGG 0.478358 4_2:-60588864 None:intergenic
TACCAGGACTACCTGATACT+TGG 0.478567 4_2:+60592085 Msa0612150:CDS
AATCTGATATATGTTCTAGT+TGG 0.481404 4_2:-60588737 None:intergenic
GAAAAGCTTGTAGTGACATT+CGG 0.481465 4_2:-60589419 None:intergenic
GGATAAGAAGATAATGTTTG+TGG 0.487315 4_2:+60589337 Msa0612150:CDS
TGGTGTACGGTATAGTTGTA+TGG 0.491607 4_2:-60591140 None:intergenic
GGATCCTTAGTATAGATAGA+AGG 0.493596 4_2:-60592033 None:intergenic
AAGGGATTGACCACTTGGGC+TGG 0.495484 4_2:+60591611 Msa0612150:CDS
TGATCTTCAACTCCTGGCAT+TGG 0.498503 4_2:+60591254 Msa0612150:CDS
GTTAAAGAACATGAAGAAGC+AGG 0.504244 4_2:+60591960 Msa0612150:CDS
ATCTATACTAAGGATCCAAC+TGG 0.504484 4_2:+60592039 Msa0612150:CDS
GATAAGAAGATAATGTTTGT+GGG 0.505312 4_2:+60589338 Msa0612150:CDS
ACCACCAAAATAGGACCATA+TGG 0.505449 4_2:+60588784 Msa0612150:exon
CTGGCATTGATTGTAGTCAT+TGG 0.505796 4_2:+60592058 Msa0612150:CDS
ATTACCGGGAACCACATATC+CGG 0.506278 4_2:+60591900 Msa0612150:CDS
TGTGATTTGAAGTCCACATA+TGG 0.507294 4_2:+60588668 Msa0612150:five_prime_UTR
GTCTTGTATGATTCATGCGT+CGG 0.512224 4_2:+60589394 Msa0612150:CDS
ACATCCTTCTATCTATACTA+AGG 0.519367 4_2:+60592029 Msa0612150:CDS
GTTACTTACTTATTATGAGT+AGG 0.522689 4_2:-60591692 None:intergenic
TATGGACATTGAAAGCCATA+TGG 0.524499 4_2:-60588799 None:intergenic
AGGTAGAGGGGCCGGATATG+TGG 0.530211 4_2:-60591911 None:intergenic
TTCCAAGTATCAGGTAGTCC+TGG 0.535659 4_2:-60592087 None:intergenic
CTATAAAAGCTGGTAAAGCA+TGG 0.539195 4_2:+60591215 Msa0612150:CDS
CATCATTTGCAGGAGGTAGA+GGG 0.540823 4_2:-60591924 None:intergenic
AACCGAAGAAGACATGTAGC+GGG 0.541404 4_2:+60591866 Msa0612150:CDS
ACATGTTGATCTTCAACTCC+TGG 0.546418 4_2:+60591248 Msa0612150:CDS
ACCCTGGACTCTATAAAAGC+TGG 0.546560 4_2:+60591205 Msa0612150:CDS
GACATAATTCAAGAAGATGT+TGG 0.547898 4_2:+60591172 Msa0612150:CDS
AGTGTGAATCCACCAATGCC+AGG 0.547954 4_2:-60591266 None:intergenic
TTTGCAGGAGGTAGAGGGGC+CGG 0.548515 4_2:-60591919 None:intergenic
ATCAAACTGAGCTTCAACGA+AGG 0.553255 4_2:-60588966 None:intergenic
GGGGCCGGATATGTGGTTCC+CGG 0.554885 4_2:-60591904 None:intergenic
TGACTACAATCAATGCCAGT+TGG 0.558982 4_2:-60592054 None:intergenic
ATACCGTACACCATATTTGG+TGG 0.560969 4_2:+60591150 Msa0612150:CDS
TACTTACTTATTATGAGTAG+GGG 0.562023 4_2:-60591690 None:intergenic
CCTTATAAAATGCATCCAAA+CGG 0.562648 4_2:-60591592 None:intergenic
ATTCATTGAGTCTAAACATG+TGG 0.578501 4_2:+60589363 Msa0612150:CDS
TATAAAAGCTGGTAAAGCAT+GGG 0.581903 4_2:+60591216 Msa0612150:CDS
TGTCCACCAAATATGGTGTA+CGG 0.595920 4_2:-60591153 None:intergenic
CTGATTCATGTGCTTTACCA+AGG 0.597601 4_2:+60589041 Msa0612150:CDS
GGGGAAGTTGAACCATTACC+GGG 0.597940 4_2:+60591886 Msa0612150:CDS
GTGGTGTAGGTTCAATGGAG+AGG 0.608923 4_2:+60589295 Msa0612150:intron
TTCATTGAGTCTAAACATGT+GGG 0.609808 4_2:+60589364 Msa0612150:CDS
TGGCATTGGTGGATTCACAC+TGG 0.614921 4_2:+60591268 Msa0612150:CDS
TGTTGGTAGAGTGCTTACCC+TGG 0.618558 4_2:+60591189 Msa0612150:CDS
TCAAACTGAGCTTCAACGAA+GGG 0.618613 4_2:-60588965 None:intergenic
TGGACTTCAAATCACATCGA+GGG 0.620611 4_2:-60588661 None:intergenic
ATCAACCCAACCAGCCCAAG+TGG 0.622283 4_2:-60591621 None:intergenic
CTTCAAATCACATCGAGGGT+AGG 0.625883 4_2:-60588657 None:intergenic
GAGATGGTTCTAATCTAGTG+AGG 0.627215 4_2:+60591561 Msa0612150:CDS
AAGTATCAGGTAGTCCTGGT+AGG 0.628734 4_2:-60592083 None:intergenic
ATCATTTGCAGGAGGTAGAG+GGG 0.628843 4_2:-60591923 None:intergenic
TGGTAAAGCATGGGTAGACA+TGG 0.629944 4_2:+60591225 Msa0612150:CDS
AGATGGTTCTAATCTAGTGA+GGG 0.631565 4_2:+60591562 Msa0612150:CDS
TTCACTACATCATTTGCAGG+AGG 0.631894 4_2:-60591931 None:intergenic
TTATAAGGGATTGACCACTT+GGG 0.640369 4_2:+60591607 Msa0612150:CDS
GAACCGAAGAAGACATGTAG+CGG 0.645973 4_2:+60591865 Msa0612150:CDS
CGGAAGAAGACAGTAGACAT+TGG 0.646035 4_2:-60589452 None:intergenic
TTCTAATCTAGTGAGGGACA+TGG 0.659068 4_2:+60591568 Msa0612150:CDS
TTCACACTGGAGATTTACGA+GGG 0.677263 4_2:+60591281 Msa0612150:CDS
CAGCTTGAAGAATCATAGTG+AGG 0.682295 4_2:-60588941 None:intergenic
ATTCACACTGGAGATTTACG+AGG 0.689675 4_2:+60591280 Msa0612150:CDS
ACCGAAGAAGACATGTAGCG+GGG 0.713042 4_2:+60591867 Msa0612150:CDS
GTGGACTTCAAATCACATCG+AGG 0.723756 4_2:-60588662 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGATTAATTTTTTAAGTT+TGG - chr4_2:60590192-60590211 None:intergenic 10.0%
!! CTTAAAAAATTAATCTTTAA+CGG + chr4_2:60590194-60590213 Msa0612150:intron 10.0%
!! TCATTGATATTATTATATTA+GGG - chr4_2:60591036-60591055 None:intergenic 10.0%
!! ATCATTGATATTATTATATT+AGG - chr4_2:60591037-60591056 None:intergenic 10.0%
!!! AATAATTGTAATTTGTTCTT+TGG + chr4_2:60588893-60588912 Msa0612150:CDS 15.0%
!! TAAATGTAAAATGACATAAA+AGG + chr4_2:60590366-60590385 Msa0612150:intron 15.0%
!!! GGTTTTAATTAAAATGATAA+GGG + chr4_2:60590757-60590776 Msa0612150:intron 15.0%
!!! TATTTAAGATACTGATTATC+AGG - chr4_2:60589010-60589029 None:intergenic 20.0%
!! TTACATTTGTACTAATCATT+AGG - chr4_2:60589260-60589279 None:intergenic 20.0%
!! TATTTGAATAAGACTAGATT+AGG + chr4_2:60589768-60589787 Msa0612150:intron 20.0%
!!! AGATTATCTTTAAAAAAGTG+TGG + chr4_2:60589993-60590012 Msa0612150:intron 20.0%
!!! GATTATCTTTAAAAAAGTGT+GGG + chr4_2:60589994-60590013 Msa0612150:intron 20.0%
!!! GTTTGATCCTTTTAAAATTA+TGG - chr4_2:60590170-60590189 None:intergenic 20.0%
!!! AAAGTGTTTGGTAAAATTAA+CGG + chr4_2:60590330-60590349 Msa0612150:intron 20.0%
!! GTAAAGTATAAAAACTGAAA+TGG - chr4_2:60590516-60590535 None:intergenic 20.0%
!! AAGTGTGCTTTAATATATAA+AGG + chr4_2:60590725-60590744 Msa0612150:intron 20.0%
!! AGTGTGCTTTAATATATAAA+GGG + chr4_2:60590726-60590745 Msa0612150:intron 20.0%
!! TAATATATAAAGGGTAAATG+TGG + chr4_2:60590735-60590754 Msa0612150:intron 20.0%
!! AATATATAAAGGGTAAATGT+GGG + chr4_2:60590736-60590755 Msa0612150:intron 20.0%
!!! GGGTTTTAATTAAAATGATA+AGG + chr4_2:60590756-60590775 Msa0612150:intron 20.0%
!! ATATTAGGGATATAAATGAT+CGG - chr4_2:60591022-60591041 None:intergenic 20.0%
!! TTCAAATATACAATCAATTG+TGG - chr4_2:60591346-60591365 None:intergenic 20.0%
!! TTGATTGTATATTTGAATTG+AGG + chr4_2:60591349-60591368 Msa0612150:intron 20.0%
!! TTACTTACTTATTATGAGTA+GGG - chr4_2:60591694-60591713 None:intergenic 20.0%
!! TGTGAAATTAGAGTATATAT+TGG + chr4_2:60592136-60592155 Msa0612150:exon 20.0%
! AATCTGATATATGTTCTAGT+TGG - chr4_2:60588740-60588759 None:intergenic 25.0%
!! ATATTCTCTTTCACAGTTTT+TGG + chr4_2:60588761-60588780 Msa0612150:five_prime_UTR 25.0%
!!! TAATTTGTTCTTTGGAAGTT+GGG + chr4_2:60588901-60588920 Msa0612150:CDS 25.0%
! CAGTTTGATTGCAAAAAATA+TGG + chr4_2:60588980-60588999 Msa0612150:CDS 25.0%
! ATCAGTATCTTAAATACTCT+TGG + chr4_2:60589014-60589033 Msa0612150:CDS 25.0%
! TATACAAACTAACAATACCT+TGG - chr4_2:60589061-60589080 None:intergenic 25.0%
! TATGTGACATATCACAAAAA+GGG - chr4_2:60589103-60589122 None:intergenic 25.0%
! ATATGTGACATATCACAAAA+AGG - chr4_2:60589104-60589123 None:intergenic 25.0%
!! TAAACATGTTTTCCTTTCTA+GGG - chr4_2:60589186-60589205 None:intergenic 25.0%
!! ATAAACATGTTTTCCTTTCT+AGG - chr4_2:60589187-60589206 None:intergenic 25.0%
! GATAAGAAGATAATGTTTGT+GGG + chr4_2:60589338-60589357 Msa0612150:CDS 25.0%
!!! CATTTTGTTTGTTTCTTTTG+CGG + chr4_2:60589564-60589583 Msa0612150:intron 25.0%
!!! ATTTTGTTTGTTTCTTTTGC+GGG + chr4_2:60589565-60589584 Msa0612150:intron 25.0%
! CTTGTTACATGTAAAATGAT+AGG + chr4_2:60589647-60589666 Msa0612150:intron 25.0%
! AATTTCGAGCTTAATATCTT+TGG - chr4_2:60589706-60589725 None:intergenic 25.0%
! AATATCTCTATGGAAAATGA+TGG - chr4_2:60589752-60589771 None:intergenic 25.0%
!! GTCTTATTCAAATATCTCTA+TGG - chr4_2:60589762-60589781 None:intergenic 25.0%
! ATTAGGTTATAAACTCTTGT+CGG - chr4_2:60589798-60589817 None:intergenic 25.0%
! ACTATATTATGCATGTCAAA+CGG + chr4_2:60589917-60589936 Msa0612150:intron 25.0%
! AATATCTAGATTTAGTGTTG+AGG - chr4_2:60590053-60590072 None:intergenic 25.0%
!!! CACAAAATAAGCTTTTAAAG+AGG + chr4_2:60590132-60590151 Msa0612150:intron 25.0%
!!! TTTTAAAGAGGCTATAGATT+GGG + chr4_2:60590144-60590163 Msa0612150:intron 25.0%
!! GATAAGCTAATTAAAGTGTT+TGG + chr4_2:60590318-60590337 Msa0612150:intron 25.0%
! TAAAATGATAAGGGTAAAAG+TGG + chr4_2:60590766-60590785 Msa0612150:intron 25.0%
! AAGAGCTTATAACTTATTTC+AGG - chr4_2:60590867-60590886 None:intergenic 25.0%
! ATGAAATTATGACACTACTT+TGG + chr4_2:60590889-60590908 Msa0612150:intron 25.0%
! TGAAATTATGACACTACTTT+GGG + chr4_2:60590890-60590909 Msa0612150:intron 25.0%
!! AAAGTGATGAATGTGTTATT+TGG + chr4_2:60591510-60591529 Msa0612150:intron 25.0%
!!! AGAAGAGTTTAGTTTTAGTA+GGG - chr4_2:60591658-60591677 None:intergenic 25.0%
!!! AAGAAGAGTTTAGTTTTAGT+AGG - chr4_2:60591659-60591678 None:intergenic 25.0%
! AAAACTAAACTCTTCTTTCA+AGG + chr4_2:60591662-60591681 Msa0612150:CDS 25.0%
! TACTTACTTATTATGAGTAG+GGG - chr4_2:60591693-60591712 None:intergenic 25.0%
! GTTACTTACTTATTATGAGT+AGG - chr4_2:60591695-60591714 None:intergenic 25.0%
!! CTCTAATTAAAAGTACGTAT+TGG - chr4_2:60591741-60591760 None:intergenic 25.0%
!! TTTTCGTAAATGTTCTTAAG+AGG + chr4_2:60592248-60592267 Msa0612150:three_prime_UTR 25.0%
!! GTAATTTGTTCTTTGGAAGT+TGG + chr4_2:60588900-60588919 Msa0612150:CDS 30.0%
AATTTCATGTTTCCCTAGAA+AGG + chr4_2:60589171-60589190 Msa0612150:intron 30.0%
GTAATGAGTAATCATTTCTG+TGG + chr4_2:60589276-60589295 Msa0612150:intron 30.0%
!!! ATGGAGAGGATTTTTTGAAT+AGG + chr4_2:60589309-60589328 Msa0612150:CDS 30.0%
GGATAAGAAGATAATGTTTG+TGG + chr4_2:60589337-60589356 Msa0612150:CDS 30.0%
ATTCATTGAGTCTAAACATG+TGG + chr4_2:60589363-60589382 Msa0612150:CDS 30.0%
TTCATTGAGTCTAAACATGT+GGG + chr4_2:60589364-60589383 Msa0612150:CDS 30.0%
AAACAAGAACAACTATTACC+CGG - chr4_2:60589475-60589494 None:intergenic 30.0%
AAACAAAATGATGACACACA+AGG - chr4_2:60589554-60589573 None:intergenic 30.0%
!! TACCTACTTTTAGTAAGAGA+GGG - chr4_2:60589597-60589616 None:intergenic 30.0%
!! ATACCTACTTTTAGTAAGAG+AGG - chr4_2:60589598-60589617 None:intergenic 30.0%
GATATTAAGCTCGAAATTGA+AGG + chr4_2:60589708-60589727 Msa0612150:intron 30.0%
TTAGGTTATAAACTCTTGTC+GGG - chr4_2:60589797-60589816 None:intergenic 30.0%
AACCTAATCTACACAAAGTT+TGG + chr4_2:60589810-60589829 Msa0612150:intron 30.0%
AACCAAACTTTGTGTAGATT+AGG - chr4_2:60589815-60589834 None:intergenic 30.0%
!! CTTTTAAAGAGGCTATAGAT+TGG + chr4_2:60590143-60590162 Msa0612150:intron 30.0%
! GATTGGGCCATAATTTTAAA+AGG + chr4_2:60590160-60590179 Msa0612150:intron 30.0%
TTTGAAAACGTGATATGCAT+AGG + chr4_2:60590648-60590667 Msa0612150:intron 30.0%
! AGTTCTTCGTAATTTTCTTG+CGG - chr4_2:60590945-60590964 None:intergenic 30.0%
TATAAATGATCGGATATCCA+CGG - chr4_2:60591012-60591031 None:intergenic 30.0%
TGAATTATGTCCACCAAATA+TGG - chr4_2:60591163-60591182 None:intergenic 30.0%
GACATAATTCAAGAAGATGT+TGG + chr4_2:60591172-60591191 Msa0612150:CDS 30.0%
TATAAAAGCTGGTAAAGCAT+GGG + chr4_2:60591216-60591235 Msa0612150:CDS 30.0%
ATTTGAATTGAGGTGATTTG+AGG + chr4_2:60591359-60591378 Msa0612150:intron 30.0%
CCTTATAAAATGCATCCAAA+CGG - chr4_2:60591595-60591614 None:intergenic 30.0%
! CGTTTGGATGCATTTTATAA+GGG + chr4_2:60591593-60591612 Msa0612150:CDS 30.0%
ACATCCTTCTATCTATACTA+AGG + chr4_2:60592029-60592048 Msa0612150:CDS 30.0%
! TGTGATTTGAAGTCCACATA+TGG + chr4_2:60588668-60588687 Msa0612150:five_prime_UTR 35.0%
AGAAAAACTAGTGCCATATG+TGG - chr4_2:60588684-60588703 None:intergenic 35.0%
!! AGTTTTTGGACCACCAAAAT+AGG + chr4_2:60588775-60588794 Msa0612150:five_prime_UTR 35.0%
! AAAGCCATATGGTCCTATTT+TGG - chr4_2:60588791-60588810 None:intergenic 35.0%
TATGGACATTGAAAGCCATA+TGG - chr4_2:60588802-60588821 None:intergenic 35.0%
GCATGGATATAAGGAGATTT+AGG - chr4_2:60588850-60588869 None:intergenic 35.0%
AGTAATCATTTCTGTGGTGT+AGG + chr4_2:60589282-60589301 Msa0612150:intron 35.0%
!!! GAGAGGATTTTTTGAATAGG+TGG + chr4_2:60589312-60589331 Msa0612150:CDS 35.0%
!!! GGATTTTTTGAATAGGTGGA+AGG + chr4_2:60589316-60589335 Msa0612150:CDS 35.0%
GAAAAGCTTGTAGTGACATT+CGG - chr4_2:60589422-60589441 None:intergenic 35.0%
! ATGTCACTACAAGCTTTTCT+AGG + chr4_2:60589423-60589442 Msa0612150:CDS 35.0%
TTCCCTCTCTTACTAAAAGT+AGG + chr4_2:60589592-60589611 Msa0612150:intron 35.0%
! CGTGACTTCTACTTTGAAAA+AGG - chr4_2:60590090-60590109 None:intergenic 35.0%
TAATCTTTAACGGCTCTGTT+TGG + chr4_2:60590204-60590223 Msa0612150:intron 35.0%
GCTCTGTTTGGTAAAAATAG+CGG + chr4_2:60590216-60590235 Msa0612150:intron 35.0%
CTACTATATATCCATATCCG+TGG + chr4_2:60590992-60591011 Msa0612150:intron 35.0%
! CACTACCACAGTTTCATTTT+GGG - chr4_2:60591086-60591105 None:intergenic 35.0%
! TCACTACCACAGTTTCATTT+TGG - chr4_2:60591087-60591106 None:intergenic 35.0%
ACTATACCGTACACCATATT+TGG + chr4_2:60591147-60591166 Msa0612150:CDS 35.0%
CTATAAAAGCTGGTAAAGCA+TGG + chr4_2:60591215-60591234 Msa0612150:CDS 35.0%
!! TTATTTGGCTTGCTTCATTC+AGG + chr4_2:60591525-60591544 Msa0612150:intron 35.0%
!! AGATGGTTCTAATCTAGTGA+GGG + chr4_2:60591562-60591581 Msa0612150:CDS 35.0%
! CCGTTTGGATGCATTTTATA+AGG + chr4_2:60591592-60591611 Msa0612150:CDS 35.0%
TTTATAAGGGATTGACCACT+TGG + chr4_2:60591606-60591625 Msa0612150:CDS 35.0%
TTATAAGGGATTGACCACTT+GGG + chr4_2:60591607-60591626 Msa0612150:CDS 35.0%
TTGTTCACTACATCATTTGC+AGG - chr4_2:60591937-60591956 None:intergenic 35.0%
GTTAAAGAACATGAAGAAGC+AGG + chr4_2:60591960-60591979 Msa0612150:CDS 35.0%
GGATCCTTAGTATAGATAGA+AGG - chr4_2:60592036-60592055 None:intergenic 35.0%
ATCTATACTAAGGATCCAAC+TGG + chr4_2:60592039-60592058 Msa0612150:CDS 35.0%
ACATGATTAGAGCTGCATTT+AGG - chr4_2:60592119-60592138 None:intergenic 35.0%
TGGACTTCAAATCACATCGA+GGG - chr4_2:60588664-60588683 None:intergenic 40.0%
ACCACCAAAATAGGACCATA+TGG + chr4_2:60588784-60588803 Msa0612150:exon 40.0%
GAGAGAGCAAAGACAATGTA+TGG - chr4_2:60588820-60588839 None:intergenic 40.0%
! TTGACTTTTGTGCTCTTGCT+GGG - chr4_2:60588874-60588893 None:intergenic 40.0%
!! TTTGACTTTTGTGCTCTTGC+TGG - chr4_2:60588875-60588894 None:intergenic 40.0%
CAGCTTGAAGAATCATAGTG+AGG - chr4_2:60588944-60588963 None:intergenic 40.0%
TCAAACTGAGCTTCAACGAA+GGG - chr4_2:60588968-60588987 None:intergenic 40.0%
ATCAAACTGAGCTTCAACGA+AGG - chr4_2:60588969-60588988 None:intergenic 40.0%
CTTGGTAAAGCACATGAATC+AGG - chr4_2:60589043-60589062 None:intergenic 40.0%
CTGATTCATGTGCTTTACCA+AGG + chr4_2:60589041-60589060 Msa0612150:CDS 40.0%
TTTCTGTGGTGTAGGTTCAA+TGG + chr4_2:60589290-60589309 Msa0612150:intron 40.0%
GTCTTGTATGATTCATGCGT+CGG + chr4_2:60589394-60589413 Msa0612150:CDS 40.0%
CAATGTCTACTGTCTTCTTC+CGG + chr4_2:60589453-60589472 Msa0612150:CDS 40.0%
AATGTCTACTGTCTTCTTCC+GGG + chr4_2:60589454-60589473 Msa0612150:CDS 40.0%
TGTCTTAGACTCACACACAT+AGG + chr4_2:60589497-60589516 Msa0612150:intron 40.0%
AACGTGATATGCATAGGAAC+TGG + chr4_2:60590654-60590673 Msa0612150:intron 40.0%
TGCATAGGAACTGGAAAACT+AGG + chr4_2:60590663-60590682 Msa0612150:intron 40.0%
AACCACCCAAAATGAAACTG+TGG + chr4_2:60591078-60591097 Msa0612150:intron 40.0%
! TACCACAGTTTCATTTTGGG+TGG - chr4_2:60591083-60591102 None:intergenic 40.0%
! GAAACTGTGGTAGTGATACT+TGG + chr4_2:60591091-60591110 Msa0612150:intron 40.0%
TGGTGTACGGTATAGTTGTA+TGG - chr4_2:60591143-60591162 None:intergenic 40.0%
ATACCGTACACCATATTTGG+TGG + chr4_2:60591150-60591169 Msa0612150:CDS 40.0%
TGTCCACCAAATATGGTGTA+CGG - chr4_2:60591156-60591175 None:intergenic 40.0%
! ACCAGCTTTTATAGAGTCCA+GGG - chr4_2:60591209-60591228 None:intergenic 40.0%
! TACCAGCTTTTATAGAGTCC+AGG - chr4_2:60591210-60591229 None:intergenic 40.0%
ACATGTTGATCTTCAACTCC+TGG + chr4_2:60591248-60591267 Msa0612150:CDS 40.0%
ATTCACACTGGAGATTTACG+AGG + chr4_2:60591280-60591299 Msa0612150:CDS 40.0%
TTCACACTGGAGATTTACGA+GGG + chr4_2:60591281-60591300 Msa0612150:CDS 40.0%
GAGGTGATTTGAGGAAACTA+CGG + chr4_2:60591368-60591387 Msa0612150:intron 40.0%
! AGGTGGGATTTTATCAGAGA+TGG + chr4_2:60591545-60591564 Msa0612150:intron 40.0%
!! GAGATGGTTCTAATCTAGTG+AGG + chr4_2:60591561-60591580 Msa0612150:CDS 40.0%
TTCTAATCTAGTGAGGGACA+TGG + chr4_2:60591568-60591587 Msa0612150:CDS 40.0%
TTCACTACATCATTTGCAGG+AGG - chr4_2:60591934-60591953 None:intergenic 40.0%
TGACTACAATCAATGCCAGT+TGG - chr4_2:60592057-60592076 None:intergenic 40.0%
!! CTGGCATTGATTGTAGTCAT+TGG + chr4_2:60592058-60592077 Msa0612150:CDS 40.0%
! AGGAGTATGTTCCAAGTATC+AGG - chr4_2:60592099-60592118 None:intergenic 40.0%
CTTCAAATCACATCGAGGGT+AGG - chr4_2:60588660-60588679 None:intergenic 45.0%
GTGGACTTCAAATCACATCG+AGG - chr4_2:60588665-60588684 None:intergenic 45.0%
!! GCCATATGGTCCTATTTTGG+TGG - chr4_2:60588788-60588807 None:intergenic 45.0%
TTGCTGGGTGCATGGATATA+AGG - chr4_2:60588859-60588878 None:intergenic 45.0%
CGGAAGAAGACAGTAGACAT+TGG - chr4_2:60589455-60589474 None:intergenic 45.0%
GCTATAAGCTCAAACGCTAC+TGG + chr4_2:60590811-60590830 Msa0612150:intron 45.0%
TGATCGGATATCCACGGATA+TGG - chr4_2:60591006-60591025 None:intergenic 45.0%
! GATACTTGGTGATATTGCGC+AGG + chr4_2:60591105-60591124 Msa0612150:intron 45.0%
ACCCTGGACTCTATAAAAGC+TGG + chr4_2:60591205-60591224 Msa0612150:CDS 45.0%
TGGTAAAGCATGGGTAGACA+TGG + chr4_2:60591225-60591244 Msa0612150:CDS 45.0%
TGATCTTCAACTCCTGGCAT+TGG + chr4_2:60591254-60591273 Msa0612150:CDS 45.0%
!! TTTGGCTTGCTTCATTCAGG+TGG + chr4_2:60591528-60591547 Msa0612150:intron 45.0%
!! TTGGCTTGCTTCATTCAGGT+GGG + chr4_2:60591529-60591548 Msa0612150:intron 45.0%
CCTCTGGATTCAAGGAGAAA+GGG - chr4_2:60591832-60591851 None:intergenic 45.0%
CCTTTCTCCTTGAATCCAGA+GGG + chr4_2:60591830-60591849 Msa0612150:intron 45.0%
AATCTTGCCCTCTGGATTCA+AGG - chr4_2:60591840-60591859 None:intergenic 45.0%
TTGAATCCAGAGGGCAAGAT+TGG + chr4_2:60591839-60591858 Msa0612150:intron 45.0%
TTCATTCCAATCTTGCCCTC+TGG - chr4_2:60591848-60591867 None:intergenic 45.0%
GAACCGAAGAAGACATGTAG+CGG + chr4_2:60591865-60591884 Msa0612150:CDS 45.0%
AACCGAAGAAGACATGTAGC+GGG + chr4_2:60591866-60591885 Msa0612150:CDS 45.0%
ATTACCGGGAACCACATATC+CGG + chr4_2:60591900-60591919 Msa0612150:CDS 45.0%
ATCATTTGCAGGAGGTAGAG+GGG - chr4_2:60591926-60591945 None:intergenic 45.0%
CATCATTTGCAGGAGGTAGA+GGG - chr4_2:60591927-60591946 None:intergenic 45.0%
ACATCATTTGCAGGAGGTAG+AGG - chr4_2:60591928-60591947 None:intergenic 45.0%
AAGTATCAGGTAGTCCTGGT+AGG - chr4_2:60592086-60592105 None:intergenic 45.0%
TACCAGGACTACCTGATACT+TGG + chr4_2:60592085-60592104 Msa0612150:CDS 45.0%
TTCCAAGTATCAGGTAGTCC+TGG - chr4_2:60592090-60592109 None:intergenic 45.0%
!! ATATTATATAATAATATCAA+AGG + chr4_2:60589967-60589986 Msa0612150:intron 5.0%
!! AATTTAATTACTATATATAT+TGG + chr4_2:60592217-60592236 Msa0612150:three_prime_UTR 5.0%
GTGGTGTAGGTTCAATGGAG+AGG + chr4_2:60589295-60589314 Msa0612150:intron 50.0%
GGTGATATTGCGCAGGACTA+TGG + chr4_2:60591112-60591131 Msa0612150:intron 50.0%
! TGTTGGTAGAGTGCTTACCC+TGG + chr4_2:60591189-60591208 Msa0612150:CDS 50.0%
! TCTTCAACTCCTGGCATTGG+TGG + chr4_2:60591257-60591276 Msa0612150:CDS 50.0%
AGTGTGAATCCACCAATGCC+AGG - chr4_2:60591269-60591288 None:intergenic 50.0%
!! TGGCATTGGTGGATTCACAC+TGG + chr4_2:60591268-60591287 Msa0612150:CDS 50.0%
!! ATTGACCACTTGGGCTGGTT+GGG + chr4_2:60591616-60591635 Msa0612150:CDS 50.0%
CCCTTTCTCCTTGAATCCAG+AGG + chr4_2:60591829-60591848 Msa0612150:intron 50.0%
CCCTCTGGATTCAAGGAGAA+AGG - chr4_2:60591833-60591852 None:intergenic 50.0%
ACCGAAGAAGACATGTAGCG+GGG + chr4_2:60591867-60591886 Msa0612150:CDS 50.0%
TCCCCGCTACATGTCTTCTT+CGG - chr4_2:60591871-60591890 None:intergenic 50.0%
CGGGGAAGTTGAACCATTAC+CGG + chr4_2:60591885-60591904 Msa0612150:CDS 50.0%
GGGGAAGTTGAACCATTACC+GGG + chr4_2:60591886-60591905 Msa0612150:CDS 50.0%
GGATATGTGGTTCCCGGTAA+TGG - chr4_2:60591901-60591920 None:intergenic 50.0%
! TGTAGTCATTGGTGCCTACC+AGG + chr4_2:60592069-60592088 Msa0612150:CDS 50.0%
TTGTGCTCTTGCTGGGTGCA+TGG - chr4_2:60588867-60588886 None:intergenic 55.0%
AGTGAGGGACATGGACCGTT+TGG + chr4_2:60591577-60591596 Msa0612150:CDS 55.0%
AAGGGATTGACCACTTGGGC+TGG + chr4_2:60591611-60591630 Msa0612150:CDS 55.0%
!! GATTGACCACTTGGGCTGGT+TGG + chr4_2:60591615-60591634 Msa0612150:CDS 55.0%
ATCAACCCAACCAGCCCAAG+TGG - chr4_2:60591624-60591643 None:intergenic 55.0%
AGGTAGAGGGGCCGGATATG+TGG - chr4_2:60591914-60591933 None:intergenic 60.0%
TTTGCAGGAGGTAGAGGGGC+CGG - chr4_2:60591922-60591941 None:intergenic 60.0%
GGGGCCGGATATGTGGTTCC+CGG - chr4_2:60591907-60591926 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 60588636 60592292 60588636 ID=Msa0612150;Name=Msa0612150
chr4_2 mRNA 60588636 60592292 60588636 ID=Msa0612150-mRNA-1;Parent=Msa0612150;Name=Msa0612150-mRNA-1;_AED=0.13;_eAED=0.13;_QI=167|1|1|1|0.8|0.66|6|127|352
chr4_2 exon 60588636 60589062 60588636 ID=Msa0612150-mRNA-1:exon:16354;Parent=Msa0612150-mRNA-1
chr4_2 exon 60589304 60589475 60589304 ID=Msa0612150-mRNA-1:exon:16355;Parent=Msa0612150-mRNA-1
chr4_2 exon 60591127 60591302 60591127 ID=Msa0612150-mRNA-1:exon:16356;Parent=Msa0612150-mRNA-1
chr4_2 exon 60591547 60591705 60591547 ID=Msa0612150-mRNA-1:exon:16357;Parent=Msa0612150-mRNA-1
chr4_2 exon 60591849 60592156 60591849 ID=Msa0612150-mRNA-1:exon:16358;Parent=Msa0612150-mRNA-1
chr4_2 exon 60592182 60592292 60592182 ID=Msa0612150-mRNA-1:exon:16359;Parent=Msa0612150-mRNA-1
chr4_2 five_prime_UTR 60588636 60588802 60588636 ID=Msa0612150-mRNA-1:five_prime_utr;Parent=Msa0612150-mRNA-1
chr4_2 CDS 60588803 60589062 60588803 ID=Msa0612150-mRNA-1:cds;Parent=Msa0612150-mRNA-1
chr4_2 CDS 60589304 60589475 60589304 ID=Msa0612150-mRNA-1:cds;Parent=Msa0612150-mRNA-1
chr4_2 CDS 60591127 60591302 60591127 ID=Msa0612150-mRNA-1:cds;Parent=Msa0612150-mRNA-1
chr4_2 CDS 60591547 60591705 60591547 ID=Msa0612150-mRNA-1:cds;Parent=Msa0612150-mRNA-1
chr4_2 CDS 60591849 60592140 60591849 ID=Msa0612150-mRNA-1:cds;Parent=Msa0612150-mRNA-1
chr4_2 three_prime_UTR 60592141 60592156 60592141 ID=Msa0612150-mRNA-1:three_prime_utr;Parent=Msa0612150-mRNA-1
chr4_2 three_prime_UTR 60592182 60592292 60592182 ID=Msa0612150-mRNA-1:three_prime_utr;Parent=Msa0612150-mRNA-1
Gene Sequence

>Msa0612150

ATGGCTTTCAATGTCCATACATTGTCTTTGCTCTCTCTGTTTAGCCTAAATCTCCTTATATCCATGCACCCAGCAAGAGCACAAAAGTCAAATAATTGTAATTTGTTCTTTGGAAGTTGGGTGATTGACTCTTCATATCCTCACTATGATTCTTCAAGCTGTCCCTTCGTTGAAGCTCAGTTTGATTGCAAAAAATATGGAAGACCTGATAATCAGTATCTTAAATACTCTTGGAAGCCTGATTCATGTGCTTTACCAAGGTTCAATGGAGAGGATTTTTTGAATAGGTGGAAGGATAAGAAGATAATGTTTGTGGGTGATTCATTGAGTCTAAACATGTGGGAATCATTGTCTTGTATGATTCATGCGTCGGTTCCGAATGTCACTACAAGCTTTTCTAGGAAAGAACCAATGTCTACTGTCTTCTTCCGGGACTATGGAGTAACCATACAACTATACCGTACACCATATTTGGTGGACATAATTCAAGAAGATGTTGGTAGAGTGCTTACCCTGGACTCTATAAAAGCTGGTAAAGCATGGGTAGACATGGACATGTTGATCTTCAACTCCTGGCATTGGTGGATTCACACTGGAGATTTACGAGGGTGGGATTTTATCAGAGATGGTTCTAATCTAGTGAGGGACATGGACCGTTTGGATGCATTTTATAAGGGATTGACCACTTGGGCTGGTTGGGTTGATGCAAATGTTGACCCTACTAAAACTAAACTCTTCTTTCAAGGAATTTCCCCTACTCATAATAAAGGGCAAGATTGGAATGAACCGAAGAAGACATGTAGCGGGGAAGTTGAACCATTACCGGGAACCACATATCCGGCCCCTCTACCTCCTGCAAATGATGTAGTGAACAAAGTGTTAAAGAACATGAAGAAGCAGGTTTATCTACTTGACATAACACTTCTCTCACAACTAAGAAAAGATGCACATCCTTCTATCTATACTAAGGATCCAACTGGCATTGATTGTAGTCATTGGTGCCTACCAGGACTACCTGATACTTGGAACATACTCCTAAATGCAGCTCTAATCATGTGA

Protein sequence

>Msa0612150

MAFNVHTLSLLSLFSLNLLISMHPARAQKSNNCNLFFGSWVIDSSYPHYDSSSCPFVEAQFDCKKYGRPDNQYLKYSWKPDSCALPRFNGEDFLNRWKDKKIMFVGDSLSLNMWESLSCMIHASVPNVTTSFSRKEPMSTVFFRDYGVTIQLYRTPYLVDIIQEDVGRVLTLDSIKAGKAWVDMDMLIFNSWHWWIHTGDLRGWDFIRDGSNLVRDMDRLDAFYKGLTTWAGWVDANVDPTKTKLFFQGISPTHNKGQDWNEPKKTCSGEVEPLPGTTYPAPLPPANDVVNKVLKNMKKQVYLLDITLLSQLRKDAHPSIYTKDPTGIDCSHWCLPGLPDTWNILLNAALIM*