AlfalfaGEDB | Msa0161040

M. sativa cultivar zhongmu-4 / Msa0161040

KEGG: K13457
GO: GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009506 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0030054 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363
PFAM: PF18052.4

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0161040	XP_013469270.1	90.083	1563	109	6	1	1525	1	1555	0.0	2781

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0161040	sp\|Q9M667\|RPP13_ARATH	28.927	885	497	32	648	1475	3	812	9.88e-64	238

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0161040	A0A072VPH2	90.083	1563	109	6	1	1525	1	1555	0.0	2781

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0161040	0.804375	2.226021e-49	-8.615850e-47
Msa0009530	Msa0161040	0.800555	1.364512e-48	-8.615850e-47
Msa0011060	Msa0161040	0.841184	5.543044e-58	-8.615850e-47
Msa0011100	Msa0161040	0.850577	1.552442e-60	-8.615850e-47
Msa0016380	Msa0161040	0.800301	1.536610e-48	-8.615850e-47
Msa0024320	Msa0161040	0.813682	2.262441e-51	-8.615850e-47
Msa0024490	Msa0161040	0.814226	1.716006e-51	-8.615850e-47
Msa0028050	Msa0161040	0.804224	2.393793e-49	-8.615850e-47
Msa0030760	Msa0161040	0.819700	1.012064e-52	-8.615850e-47
Msa0032990	Msa0161040	0.809039	2.303604e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0161040	MtrunA17_Chr1g0197241	90.083	1563	109	6	1	1525	1	1555	0.0	2781
Msa0161040	MtrunA17_Chr1g0197201	58.226	1161	360	26	468	1520	222	1365	0.0	1222
Msa0161040	MtrunA17_Chr1g0197201	40.803	299	163	7	128	415	1	296	4.00e-47	186
Msa0161040	MtrunA17_Chr1g0197181	68.561	528	109	5	1054	1525	2	528	0.0	699
Msa0161040	MtrunA17_Chr1g0197191	64.371	334	107	6	693	1019	2	330	2.31e-134	418
Msa0161040	MtrunA17_Chr8g0344071	36.182	749	431	14	779	1502	418	1144	1.72e-111	382
Msa0161040	MtrunA17_Chr5g0404741	29.654	897	538	28	671	1505	21	886	8.30e-76	272
Msa0161040	MtrunA17_Chr1g0151481	27.685	903	549	24	681	1507	27	901	1.00e-72	263
Msa0161040	MtrunA17_Chr3g0101321	28.196	876	559	21	680	1505	26	881	6.97e-72	260
Msa0161040	MtrunA17_Chr5g0410021	28.045	895	539	32	680	1506	26	883	2.32e-70	256

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0161040	AT3G46530.1	28.927	885	497	32	648	1475	3	812	1.00e-64	238
Msa0161040	AT3G07040.1	25.281	890	575	28	680	1506	26	888	4.41e-58	219
Msa0161040	AT5G43470.3	26.480	895	553	26	678	1505	24	880	1.68e-57	216
Msa0161040	AT5G43470.2	26.480	895	553	26	678	1505	24	880	1.68e-57	216
Msa0161040	AT5G43470.4	26.480	895	553	26	678	1505	24	880	1.68e-57	216
Msa0161040	AT5G43470.1	26.480	895	553	26	678	1505	24	880	1.68e-57	216
Msa0161040	AT5G48620.6	26.209	889	563	28	678	1505	24	880	1.93e-57	216
Msa0161040	AT5G48620.1	26.209	889	563	28	678	1505	24	880	1.93e-57	216
Msa0161040	AT5G48620.4	26.209	889	563	28	678	1505	24	880	1.93e-57	216
Msa0161040	AT5G48620.2	26.209	889	563	28	678	1505	24	880	1.93e-57	216

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Find 343 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACCAACCTTCTTAC+AGG	0.318311	1_4:+35138340	None:intergenic
AAAACAGAGTCAATCTGCCA+CGG	0.644847	1_4:-35138181	Msa0161040:intron
AAAAGGAACACTGCCAGGAC+AGG	0.484622	1_4:+35140023	None:intergenic
AAAAGGAACATTGCCAGAAC+AGG	0.389180	1_4:+35140206	None:intergenic
AAAAGGAACGTTCCCATGAC+AGG	0.473758	1_4:+35140377	None:intergenic
AAAATCTTTCAAAAGTATCA+TGG	0.454360	1_4:+35137279	None:intergenic
AAACAACCAACCTTCTTACA+GGG	0.595683	1_4:+35138341	None:intergenic
AAACACAGTGTTCGAAGATG+TGG	0.540476	1_4:+35137256	None:intergenic
AAAGAAATTGTAATGAAATG+TGG	0.552946	1_4:-35138577	Msa0161040:CDS
AAAGAAGTCCATTATTCGCC+GGG	0.502567	1_4:-35138142	Msa0161040:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCTAATGAAATTCCAAAGT+CGG	+	chr1_4:35136962-35136981	None:intergenic	30.0%
AGTCAAACTACTATAGTTAC+TGG	-	chr1_4:35137453-35137472	Msa0161040:CDS	30.0%
AAACAAAAAGGAATAGGATG+TGG	+	chr1_4:35137875-35137894	None:intergenic	30.0%
AGAAGAAGAAGAAGAAGAAA+TGG	-	chr1_4:35138027-35138046	Msa0161040:CDS	30.0%
AAGAAGAAGAAGAAATGGAT+GGG	-	chr1_4:35138032-35138051	Msa0161040:CDS	30.0%
AGAGAAGGGAAATAATAAGA+CGG	-	chr1_4:35138216-35138235	Msa0161040:intron	30.0%
GTGAATAACCCAATATGAAA+AGG	+	chr1_4:35138322-35138341	None:intergenic	30.0%
AGAAGAAGAAGAAGAAGAAA+TGG	-	chr1_4:35138027-35138046	Msa0161040:CDS	30.0%
AAGAAGAAGAAGAAATGGAA+GGG	-	chr1_4:35138380-35138399	Msa0161040:CDS	30.0%
TCTTGATATATCAGATAGGA+AGG	-	chr1_4:35138799-35138818	Msa0161040:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	35136955	35141575	35136955	ID=Msa0161040;Name=Msa0161040
chr1_4	mRNA	35136955	35141575	35136955	ID=Msa0161040-mRNA-1;Parent=Msa0161040;Name=Msa0161040-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|1\|1\|2\|0\|1525
chr1_4	exon	35138240	35141575	35138240	ID=Msa0161040-mRNA-1:exon:10634;Parent=Msa0161040-mRNA-1
chr1_4	exon	35136955	35138196	35136955	ID=Msa0161040-mRNA-1:exon:10633;Parent=Msa0161040-mRNA-1
chr1_4	CDS	35138240	35141575	35138240	ID=Msa0161040-mRNA-1:cds;Parent=Msa0161040-mRNA-1
chr1_4	CDS	35136955	35138196	35136955	ID=Msa0161040-mRNA-1:cds;Parent=Msa0161040-mRNA-1

Gene Sequence

>Msa0161040

ATGGCCGACTTTGGAATTTCATTAGCTTTATCAGCCGCCAACGTCGCCAACGGTCTATCCAAAATCCTGATTGAAGAGTATGCAGTGTTGGGTGGTGGGACAATTAGGCACGTAGAATGGATTGAAAGAGAGCTGAGGTCGATGCAGGGATTGTTGGAACAGGCCGGGCAGCGTGGGTACGGAGAACAAGAGCAAGAGTTTAACGAGTGGGAAGAGAAGTTGAAGGAAGTTGCTGGTGATGCAGAGGATGTGATAGAAACTTTTGTGATCAAATCGGTGAAAAGGAGGAGATGGGGAGTTCTGTATTGGATTGACAAACACAAGGTTGGGAAAGAGTTGCAGAAGATCCGCAGGAGGATGAGAGACATCTCTCAGACTGGAATGAACTTGAACACAAATGTCGTCAGTGTCTCTGTTGAAACTCCAGGAAGAGAAGCACCGTCATCAACAACCACCTCAGTTGTGTCCCTAGCAATGGAGAAGCTTGATCACATTCTGAGTCAAACTACTATAGTTACTGGTGAAGAGGTGATTGAGATGGTGGAACGAGTAAGAGGTGAATTCACCCGCCTGCAAAATGATATTGTGTCTAATTTGAGGTCAACAAGTGAAAGAGAAAATGTGTGGTTAGAAGAGGCGAAGGAACTTTGCAATTATACTGAAAGTGTTGCAGGTAATTTCATCCTTGTCAAGGAAAGACGGTCTAAAATGGGTAGGCTTAAGAAGCTCCTTTATCTTTCAGCCGATTATGCTTCTGAAAATGAATTTAAAAAACAGATGAAGTATATCGGGACTCGAATTGGAGATGCAGTTCACATAAGTGTGACTTACGAAGTTGGTGGACAATTAGACATGGGAGTGGGATTCAAAAAAACATCCCCTGTACCAGACTTGTCAATAGAGAGCTTGATAATTTTCCACATCCTATTCCTTTTTGTTTGCCCTGTTATTGTTCTTTCCGACTTCTCGAAACCCTCCTTGTTTTTATTGTTAGTAATCATCTATCCCATTTTCATAATTGTTGATGAACGAGGAAGAAAAACATATAAGTCCAGTATGATGATGTTGAAGAAGAAGAAGAAGAAGAAGAAATGGATGGGAAGGATAAGACAGTTTCTGCGCTTGTTTTTTTCCACTGTAATTTATTTCACGATTTTCATCCTGTTTCAGATTTACCCTGTCATGGGAACGTTCCTTTTCATCTTGAGTTTTTCCCTTACTGAAGTTATTGCGTGGAGTCTAAAGAAGAAGAAGAGATGGAAGAGAAGGGAAATAATAAGACGGTTTACGTGCTTCTTGTTTTCCACTGTAATTTATTTACCGATATTTTTCATGTTTAAGTTTCACCCTGTTCTGGCAATGTTCCTTTTCATATTGGGTTATTCACTTAATAAAAGTATTGCACGGAGTCTGAAGAAGAAGAAGAAGAAGAAGAAGAAATGGAAGGGAATGGAAAAAATAATACAGTCTCCGCGCCTTTTTTTTAACGCTCTAAGTTATTTTGCGTTTTTCTCCCTGCTTCAGTTTCACCCTGTCCTGGCAGTGTTCCTTTTCATATTGAGTAATTTACTTTATGAAGTTATTGCATGGACTGTGAATTTATGGAGGTCTACAGCCAATAATTTGAAGTGTACAGAAAGATATTTAGCTGTAATGCGTGTGTTTTTGAATGATACAACCGAAAGTGCGGAAGGCCTAAGTAAAAGGCAGAGAGCATGGGTGGATCAACTGAGAGTCGTGTCTCAAAATGGTGAATTTCTTATTGATGGAGATGCAAAAGTTAAGGGTGGTTGTTTGAGCAGAATTAAGTTTGCCAAGGATATCAACTGTTTGTTGAAAGAGATTCTTGATATATCAGATAGGAAGGCCATTTATTGCATTGGAAATGTTCAAAGAAATCAACAAGAGCTTGTACCTTTATTGGGCAATGGGCATACAAGAGATATTGAGAATGAAATCATTGTTGAACACGCTGGAAATTCTAGTGCCATTCCAGAAGCAGCCGCCTCCTCCTCCTCCTCGTATCGGCCTGTCATGGGGCTCAAAGAGAAAGTCCAATCAATCAGAAGGGAAAAGGAATTGATGGATGCGCTGCTTCTGGATGCACAAGAGATGGGAGAATTGGAGGGAAGATCCAGAATCTGGGTGGAGCAACTGAGAGATATTTCCCTTGAAGTTCAATCTGTCATTAACAAATATGATGCCAAACTGAAGCATAAGCCAAATGTCATCTACATTTTTAAGTACTGGACCCGACGTGTTCTTAATAAGAAGGTAGATGGTATCAAAAACAAAATTGAAGAAGCTTCTAGGAGAAGAAAAGCATATCGTTTGGTGCAAATTCAAAGCCGAGCCGTATCCATGTTTCAAATATTACGTGCAAGGACGCAACTGTCTCTCGTTGCCAATGAATCCAGTGTGGTTGGATTTCATGATGACAGACAAGCTCTGATGGCTGAGTTACTGTCAGACGAGAAACGTCGCTGCATTACTTGGATTGTTGGAATCGAAGGCACGGGTAAGACAGCACTAGCAAAGTTGGTATTTGAAGACAACACTGTTGTAGCTCATTTTCAGCATCGCCTATGGGTGTCACTGCCTTCAAATTGTACGACAAACCAGTTTGTTGCAGAAATTGGCAAGGAAGCCGCCGAACAAATTACTGTAGAAGAAGTCTTGTCAACTGATTATGTACTCACAACCTTGGCGCATACAAAGTACCTGTTAATTGTTGATGGCATAAAAGAAACTTCTCAAGTATACTTGGATACCTTGAACAGGGCAATACCCGATATGTCAACGGGAAGCAGAGTTCTTTTTACAACTCGCAATGCAAATGTAGCCCAACATGCAGCAGGTACGATCTTTGTTCACCCGCTACAGTTACTAGATGATGAAACTAGTTGGCTGTTGTTCACAAGACATTTGAAGGTGGACATTCACCCCGAGTCAGAAACAAAACTTATCAAGGTTGGAAAAGAAATTGTAATGAAATGTGGGGGGCTGCCATCACAAATATTGAAAATGAGTGATTTGCTTTCGCATAAAGATGTTACACATGAGGAGTGGTCAAGAGTGTTGCGGGGCGAGCAGCTCAATGAAGATCAAATACAAAGTTGGTCTGGAATGCTCGACACAATTAATAATAACTTACCTTCTTATCTGAGAAGATGTCTATTTTACTTTGTGATATTCCCAGCTGAATTTTGGATCCCTGTAAGAAGGTTGGTTGTTTTGTGGGTTGCCGAGAGTCTGGTTCATCAGACAGAAGATGACGAAATGTCGCCGGAGCTAGTTGCAGAAAGGTACTTGACAGAGTTGATAGATAGGAACATGAGTCAATCTGCCACGGATTCGAATGAAGACCCAAAGAAGTCCATTATTCGCCGGGTTGCAGATCATCTTGATAAAGATGATATCTGGAATGATCACATTCATGGTGACATTACTGATTCAACTTCCCTTAAAACCTACTACAGGGACGTTCTCTCCTTTCTTTCCTTTGATACTCAAGAGGGGAGTAAACCTGGGCATCAAGTAGGTAACTTTCTCAAGGGATGTATTTCAAGTGATTGCTTCTTGCTCCTTCGTGTGCTTGATCTTGAACGCGTTTACAAGCCCAAGTTGCCTAATCGCATAGCAAGACTTTCACGGCTAAGGTATCTTGGCTTGAGATGGACTTACTTAGAGTCACTTCCATCATCTATAAGCAAGTTGTTGAAGCTACAGACTCTTGATCTCAAACATACTTATATACATACTCTACCTAGCTCAATATGGAAGATGGAACTCAGACACTTGTTCTTGAGCGAGACTTTCCGAAGCAGATTTCCACCTCAACCAAAAGGTAATTCTCTATCTGACCTCCAAACTCTGTGGGGACTGTTTGTAGATGAGGAGACTCCAGTGAAGGATGGCTTGGACAGATTGGTCAATATCACAAAATTGGGATTAGCATGCCAATCAATGTCACTAAACCAAGAGGCAATGACAGCTCAACTTGACACGGTAGCAGACTGGATTACGAAACTAGAACACCTTCAATCGCTGAGACTGAAATCAAGAGATGAAGAAGGTCGACCTTGGAATTTACACTTGAAGTCCTTGGAGAATAACATAAATCTCACTGACATGTATTTACTGGGAAGATTGAGCAGTTCATTTGTTCTGTCTCAATTCCCTCTGAGCCTCATTGAACTTACCCTATCACATTCGGAACTAGAGGATGATCCCATGATACTTTTGAAAGATTTTCCACATCTTCGAACACTGTGTTTACTCGCAGAGTCATACGCGGGCACAACTGTGATTTGTGAATCTCAAAGCTTTCCTCAGCTTCATGTCTTAAAATTTTGGAAGCTGTGGTATTTGGAGGAAATTAAGATAGAGCGAGGAGCACTCCCATGTCTCAGACAACTGGAAATCAGATCGTGTCCGAACCTGCAAATGCTTCCTGATGGACTAAAGCATGTCAACACTCTGCTTGAATTGAAGTTAACAAACATGCCAATGGAAATCAATGCTGAGGCGCATAACATCCCAACCAATTGTCAAGTCGTCCAAACTAAATTTCAGTAG

Protein sequence

>Msa0161040

MADFGISLALSAANVANGLSKILIEEYAVLGGGTIRHVEWIERELRSMQGLLEQAGQRGYGEQEQEFNEWEEKLKEVAGDAEDVIETFVIKSVKRRRWGVLYWIDKHKVGKELQKIRRRMRDISQTGMNLNTNVVSVSVETPGREAPSSTTTSVVSLAMEKLDHILSQTTIVTGEEVIEMVERVRGEFTRLQNDIVSNLRSTSERENVWLEEAKELCNYTESVAGNFILVKERRSKMGRLKKLLYLSADYASENEFKKQMKYIGTRIGDAVHISVTYEVGGQLDMGVGFKKTSPVPDLSIESLIIFHILFLFVCPVIVLSDFSKPSLFLLLVIIYPIFIIVDERGRKTYKSSMMMLKKKKKKKKWMGRIRQFLRLFFSTVIYFTIFILFQIYPVMGTFLFILSFSLTEVIAWSLKKKKRWKRREIIRRFTCFLFSTVIYLPIFFMFKFHPVLAMFLFILGYSLNKSIARSLKKKKKKKKKWKGMEKIIQSPRLFFNALSYFAFFSLLQFHPVLAVFLFILSNLLYEVIAWTVNLWRSTANNLKCTERYLAVMRVFLNDTTESAEGLSKRQRAWVDQLRVVSQNGEFLIDGDAKVKGGCLSRIKFAKDINCLLKEILDISDRKAIYCIGNVQRNQQELVPLLGNGHTRDIENEIIVEHAGNSSAIPEAAASSSSSYRPVMGLKEKVQSIRREKELMDALLLDAQEMGELEGRSRIWVEQLRDISLEVQSVINKYDAKLKHKPNVIYIFKYWTRRVLNKKVDGIKNKIEEASRRRKAYRLVQIQSRAVSMFQILRARTQLSLVANESSVVGFHDDRQALMAELLSDEKRRCITWIVGIEGTGKTALAKLVFEDNTVVAHFQHRLWVSLPSNCTTNQFVAEIGKEAAEQITVEEVLSTDYVLTTLAHTKYLLIVDGIKETSQVYLDTLNRAIPDMSTGSRVLFTTRNANVAQHAAGTIFVHPLQLLDDETSWLLFTRHLKVDIHPESETKLIKVGKEIVMKCGGLPSQILKMSDLLSHKDVTHEEWSRVLRGEQLNEDQIQSWSGMLDTINNNLPSYLRRCLFYFVIFPAEFWIPVRRLVVLWVAESLVHQTEDDEMSPELVAERYLTELIDRNMSQSATDSNEDPKKSIIRRVADHLDKDDIWNDHIHGDITDSTSLKTYYRDVLSFLSFDTQEGSKPGHQVGNFLKGCISSDCFLLLRVLDLERVYKPKLPNRIARLSRLRYLGLRWTYLESLPSSISKLLKLQTLDLKHTYIHTLPSSIWKMELRHLFLSETFRSRFPPQPKGNSLSDLQTLWGLFVDEETPVKDGLDRLVNITKLGLACQSMSLNQEAMTAQLDTVADWITKLEHLQSLRLKSRDEEGRPWNLHLKSLENNINLTDMYLLGRLSSSFVLSQFPLSLIELTLSHSELEDDPMILLKDFPHLRTLCLLAESYAGTTVICESQSFPQLHVLKFWKLWYLEEIKIERGALPCLRQLEIRSCPNLQMLPDGLKHVNTLLELKLTNMPMEINAEAHNIPTNCQVVQTKFQ*