AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1064920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1064920 MtrunA17_Chr7g0244441 97.638 127 3 0 23 149 6 132 1.33e-87 251
Msa1064920 MtrunA17_Chr5g0437991 56.209 153 62 2 1 148 25 177 2.04e-50 159
Msa1064920 MtrunA17_Chr3g0106861 47.682 151 72 2 1 144 1 151 3.73e-37 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1064920 AT2G40435.1 53.378 148 64 2 1 143 1 148 5.50e-47 150
Msa1064920 AT3G56220.1 54.225 142 64 1 8 148 13 154 4.60e-46 147
Msa1064920 AT2G40435.3 56.800 125 49 2 1 120 1 125 3.98e-42 137
Msa1064920 AT2G40435.2 56.800 125 49 2 1 120 1 125 4.12e-42 136
Msa1064920 AT3G56220.2 57.522 113 48 0 8 120 13 125 1.04e-39 130

Find 60 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAACTCTTCTATGTATT+TGG 0.128186 7_2:-58303774 None:intergenic
AGCTTCTGTCTAGTTGATTT+TGG 0.179546 7_2:-58303290 None:intergenic
TTTCATGATTAATGTGCTTT+TGG 0.236031 7_2:+58304077 Msa1064920:CDS
GGTAGGCACCTCATATATTT+TGG 0.249338 7_2:-58305869 None:intergenic
CTGCAAAGCCACCGCATATA+TGG 0.252548 7_2:+58303249 Msa1064920:five_prime_UTR
GCATCTTATTATGGATAGTT+TGG 0.280192 7_2:+58305934 Msa1064920:three_prime_UTR
AGAATAACCTAAAAGTTTCT+AGG 0.285112 7_2:-58306265 None:intergenic
TTGTCATCAGCATCTTATTA+TGG 0.300219 7_2:+58305925 Msa1064920:three_prime_UTR
GCCCTTACATAATATTGATA+TGG 0.303015 7_2:+58305901 Msa1064920:three_prime_UTR
TTGAAAGACAAATAGGTTGA+TGG 0.358682 7_2:-58306316 None:intergenic
CTAGGATGTAACATGTAATA+AGG 0.391510 7_2:-58306247 None:intergenic
AGCCATATCAATATTATGTA+AGG 0.403871 7_2:-58305903 None:intergenic
TGGTATGCTGGTATCAATAC+TGG 0.411863 7_2:+58304113 Msa1064920:CDS
GTGATATGCCCGCTAATGTA+TGG 0.415150 7_2:+58306032 Msa1064920:three_prime_UTR
AAAAGAATATCGTATCTATA+GGG 0.419953 7_2:+58306071 Msa1064920:three_prime_UTR
ACACCCTTTGTTCTTGCAAA+AGG 0.431451 7_2:-58306175 None:intergenic
CAACTCTTCTATGTATTTGG+AGG 0.433619 7_2:-58303771 None:intergenic
ATCACGGATATTGTTTCACT+TGG 0.443120 7_2:-58305832 None:intergenic
TATTATGGATAGTTTGGAAA+AGG 0.443533 7_2:+58305940 Msa1064920:three_prime_UTR
GAGTGTGAAAACCCTAGAAA+AGG 0.453059 7_2:+58304053 Msa1064920:CDS
GAGGGAATGAACTCTGAGTT+AGG 0.454266 7_2:+58303806 Msa1064920:CDS
CTCCTCCAACAGCTTCTAGC+TGG 0.462141 7_2:-58304197 None:intergenic
AGTATTGATACCAGCATACC+AGG 0.467026 7_2:-58304111 None:intergenic
TGAGTCCTCAACTACTCAAA+TGG 0.469573 7_2:+58303835 Msa1064920:CDS
TTGTGACATCTCGAAGTTGT+TGG 0.472854 7_2:-58303358 None:intergenic
CTCATCCATTTGAGTAGTTG+AGG 0.479517 7_2:-58303840 None:intergenic
AAAGAATAGCCCTGGTATGC+TGG 0.482593 7_2:+58304101 Msa1064920:CDS
ACCATGGGAATATGTTGATA+AGG 0.486547 7_2:-58306199 None:intergenic
GGAGGCATCCACAATAATTG+AGG 0.501904 7_2:-58303753 None:intergenic
GACTTGATGTACTTGATGCT+AGG 0.505174 7_2:+58304154 Msa1064920:CDS
AAATTCTGCCAAAATATATG+AGG 0.508014 7_2:+58305861 Msa1064920:three_prime_UTR
ACTTGATGTACTTGATGCTA+GGG 0.510074 7_2:+58304155 Msa1064920:CDS
TAGTTTGGAAAAGGAATGAA+TGG 0.527311 7_2:+58305949 Msa1064920:three_prime_UTR
GGCAGAATTTGATGGAATCA+CGG 0.531542 7_2:-58305848 None:intergenic
ACTTTCCAGCTAGAAGCTGT+TGG 0.533098 7_2:+58304192 Msa1064920:CDS
TGAGGTGCCTACCACTTCAA+TGG 0.538186 7_2:+58305879 Msa1064920:three_prime_UTR
TTCCAGCTAGAAGCTGTTGG+AGG 0.538408 7_2:+58304195 Msa1064920:CDS
GAACAAAGCCTCAATTATTG+TGG 0.541995 7_2:+58303745 Msa1064920:CDS
TCAAATGGATGAGCAACCTA+TGG 0.542120 7_2:+58303850 Msa1064920:CDS
AGTGTGAAAACCCTAGAAAA+GGG 0.544492 7_2:+58304054 Msa1064920:CDS
CGATATACCCATACATTAGC+GGG 0.547505 7_2:-58306040 None:intergenic
GCCTTATCAACATATTCCCA+TGG 0.549449 7_2:+58306198 Msa1064920:three_prime_UTR
TTAAGAGTTCTCTCATGCAA+TGG 0.568468 7_2:-58306139 None:intergenic
GAAGCTATAAGAAGCTAGCA+TGG 0.570317 7_2:+58303307 Msa1064920:exon
TAACATGTAATAAGGTGCAA+TGG 0.571162 7_2:-58306239 None:intergenic
ACCCTTTGGTTCCATATATG+CGG 0.574436 7_2:-58303260 None:intergenic
CTTTGGTTCCATATATGCGG+TGG 0.581933 7_2:-58303257 None:intergenic
TGATATGCCCGCTAATGTAT+GGG 0.591360 7_2:+58306033 Msa1064920:three_prime_UTR
GCCATATCAATATTATGTAA+GGG 0.592517 7_2:-58305902 None:intergenic
ACCGCATATATGGAACCAAA+GGG 0.602352 7_2:+58303259 Msa1064920:five_prime_UTR
CACCGCATATATGGAACCAA+AGG 0.603618 7_2:+58303258 Msa1064920:five_prime_UTR
CTCAAAAGATCAAAGAAGAG+TGG 0.617358 7_2:+58303331 Msa1064920:CDS
CGATAGTATCAATGCGCAAG+TGG 0.619080 7_2:+58305688 Msa1064920:CDS
TCTTACATACATAGAAACCA+TGG 0.619324 7_2:-58306215 None:intergenic
GTAAGGGCCATTGAAGTGGT+AGG 0.625867 7_2:-58305886 None:intergenic
TTATGTAAGGGCCATTGAAG+TGG 0.626980 7_2:-58305890 None:intergenic
CTTACATACATAGAAACCAT+GGG 0.650049 7_2:-58306214 None:intergenic
ACGATATACCCATACATTAG+CGG 0.675005 7_2:-58306041 None:intergenic
GTATTGATACCAGCATACCA+GGG 0.698292 7_2:-58304110 None:intergenic
GTTGCAAGCAATCAAGAACA+CGG 0.713497 7_2:+58305724 Msa1064920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTTTTTTTTTTTA+GGG + chr7_2:58304527-58304546 Msa1064920:intron 0.0%
!! ATATACAAAAAAAAAAGTTA+AGG + chr7_2:58303463-58303482 Msa1064920:intron 10.0%
!! TATACAAAAAAAAAAGTTAA+GGG + chr7_2:58303464-58303483 Msa1064920:intron 10.0%
!!! GTATTTTATTTTATTTTTGT+AGG + chr7_2:58304029-58304048 Msa1064920:intron 10.0%
!!! TTTAATACTTTGTTTTTTAT+TGG + chr7_2:58304847-58304866 Msa1064920:intron 10.0%
!! CATTTAAATCAAATTATAAA+TGG - chr7_2:58305130-58305149 None:intergenic 10.0%
!! TCATCATATATATATATATA+GGG - chr7_2:58305608-58305627 None:intergenic 10.0%
!! TAGAAGAAAATATTGAATTA+TGG + chr7_2:58303685-58303704 Msa1064920:intron 15.0%
!!! TTTTTTTTTTTTTTTAGGGA+TGG + chr7_2:58304531-58304550 Msa1064920:intron 15.0%
!! AAATATTTGGTTATACAATT+TGG + chr7_2:58304558-58304577 Msa1064920:intron 15.0%
!! AATATTTGGTTATACAATTT+GGG + chr7_2:58304559-58304578 Msa1064920:intron 15.0%
!!! TAAGTATTTTTCATGAATAT+TGG + chr7_2:58304645-58304664 Msa1064920:intron 15.0%
!!! TCTAATTTTGATTTTTTCTA+AGG + chr7_2:58305229-58305248 Msa1064920:intron 15.0%
!! ATATCCCATATATATATATA+TGG + chr7_2:58305460-58305479 Msa1064920:intron 15.0%
!! TATCCCATATATATATATAT+GGG + chr7_2:58305461-58305480 Msa1064920:intron 15.0%
!! TAACCCATATATATATATAT+GGG - chr7_2:58305467-58305486 None:intergenic 15.0%
!! ATAACCCATATATATATATA+TGG - chr7_2:58305468-58305487 None:intergenic 15.0%
!! CTCATCATATATATATATAT+AGG - chr7_2:58305609-58305628 None:intergenic 15.0%
!! CTATATATATATATATGATG+AGG + chr7_2:58305607-58305626 Msa1064920:intron 15.0%
!!! AAATATTGAACTCTTTGTTT+TGG - chr7_2:58303527-58303546 None:intergenic 20.0%
!!! AGTAATTAATTTGTTAGAAG+TGG + chr7_2:58303653-58303672 Msa1064920:intron 20.0%
!!! CTCTTCTTTTATATATAACT+TGG + chr7_2:58303894-58303913 Msa1064920:intron 20.0%
!! ATATAAAAATAGAGTACAAG+AGG - chr7_2:58303924-58303943 None:intergenic 20.0%
!! ATAAAGCAATAAAGAGATTA+AGG - chr7_2:58304270-58304289 None:intergenic 20.0%
!! TTAAAACCAATATAAAGAAG+AGG + chr7_2:58304340-58304359 Msa1064920:intron 20.0%
!! TTAATTCAATTTGAGTAAGA+TGG + chr7_2:58305057-58305076 Msa1064920:intron 20.0%
!! TCTACTAACAAACAAAAATT+TGG + chr7_2:58305081-58305100 Msa1064920:intron 20.0%
!! CTACTAACAAACAAAAATTT+GGG + chr7_2:58305082-58305101 Msa1064920:intron 20.0%
!!! ATACCTATTTTTCTTTCATT+CGG + chr7_2:58305268-58305287 Msa1064920:intron 20.0%
!! ATTATTATGTTCTTGTCTAA+AGG + chr7_2:58305355-58305374 Msa1064920:intron 20.0%
!!! ATTTTACAAGTTTCAAGTTA+TGG + chr7_2:58305977-58305996 Msa1064920:three_prime_UTR 20.0%
!!! AGTAACATTTTGTATTTTAG+TGG + chr7_2:58306001-58306020 Msa1064920:three_prime_UTR 20.0%
!!! GTAACATTTTGTATTTTAGT+GGG + chr7_2:58306002-58306021 Msa1064920:three_prime_UTR 20.0%
!! AAAAAGAATATCGTATCTAT+AGG + chr7_2:58306070-58306089 Msa1064920:three_prime_UTR 20.0%
!! AAAAGAATATCGTATCTATA+GGG + chr7_2:58306071-58306090 Msa1064920:three_prime_UTR 20.0%
! GATATCAAGTATATTCACTT+TGG + chr7_2:58303557-58303576 Msa1064920:intron 25.0%
! TAATAGCATTGTGTCTTTAT+TGG - chr7_2:58303600-58303619 None:intergenic 25.0%
!! TTTCATGATTAATGTGCTTT+TGG + chr7_2:58304077-58304096 Msa1064920:CDS 25.0%
! TAAGAACCTCTTCTTTATAT+TGG - chr7_2:58304349-58304368 None:intergenic 25.0%
! GTGAGTGTATATATATGTTA+AGG + chr7_2:58304388-58304407 Msa1064920:intron 25.0%
!! TGAGAAAATCTTAATGCTTT+TGG + chr7_2:58304442-58304461 Msa1064920:intron 25.0%
!! AAAGGAGTATATAATTCCAT+CGG + chr7_2:58304470-58304489 Msa1064920:intron 25.0%
! TTCAATATTTATATACCCGA+TGG - chr7_2:58304489-58304508 None:intergenic 25.0%
! AATATTGAAGAAGTCTTTCA+TGG + chr7_2:58304500-58304519 Msa1064920:intron 25.0%
! TTATTATCAGTCATTTCAAG+TGG - chr7_2:58304708-58304727 None:intergenic 25.0%
! AAGTATATATACTTACCAAG+AGG + chr7_2:58304793-58304812 Msa1064920:intron 25.0%
! ATTCCGAATGAAAGAAAAAT+AGG - chr7_2:58305274-58305293 None:intergenic 25.0%
!!! GTTGGTTAGTTTATTATACA+AGG - chr7_2:58305311-58305330 None:intergenic 25.0%
!!! TTATTTTATGCAGAGTCATA+AGG + chr7_2:58305664-58305683 Msa1064920:intron 25.0%
!!! TATATTTTGGCAGAATTTGA+TGG - chr7_2:58305859-58305878 None:intergenic 25.0%
! AAATTCTGCCAAAATATATG+AGG + chr7_2:58305861-58305880 Msa1064920:three_prime_UTR 25.0%
! GCCATATCAATATTATGTAA+GGG - chr7_2:58305905-58305924 None:intergenic 25.0%
! AGCCATATCAATATTATGTA+AGG - chr7_2:58305906-58305925 None:intergenic 25.0%
! TATTATGGATAGTTTGGAAA+AGG + chr7_2:58305940-58305959 Msa1064920:three_prime_UTR 25.0%
! AGAATAACCTAAAAGTTTCT+AGG - chr7_2:58306268-58306287 None:intergenic 25.0%
ATATTCCAACTCAATAAAGG+AGG + chr7_2:58303487-58303506 Msa1064920:intron 30.0%
! TTACCCATTTGGGATATTAA+AGG - chr7_2:58303715-58303734 None:intergenic 30.0%
AATATCCCAAATGGGTAAAT+TGG + chr7_2:58303717-58303736 Msa1064920:intron 30.0%
CTTCAACTCTTCTATGTATT+TGG - chr7_2:58303777-58303796 None:intergenic 30.0%
ATCTAAATACGCAAAAGATG+TGG - chr7_2:58303987-58304006 None:intergenic 30.0%
! AATCATGAAACCCTTTTCTA+GGG - chr7_2:58304067-58304086 None:intergenic 30.0%
! TAATCATGAAACCCTTTTCT+AGG - chr7_2:58304068-58304087 None:intergenic 30.0%
! AAGGAGTATATAATTCCATC+GGG + chr7_2:58304471-58304490 Msa1064920:intron 30.0%
AGTGTTATATATACTCCTCT+TGG - chr7_2:58304811-58304830 None:intergenic 30.0%
! ATAGAAGACACCTTTTATGA+AGG + chr7_2:58305489-58305508 Msa1064920:intron 30.0%
CTAAAAGACACCTTCATAAA+AGG - chr7_2:58305502-58305521 None:intergenic 30.0%
AAAGTGAAAATCACACCTTA+AGG + chr7_2:58305537-58305556 Msa1064920:intron 30.0%
! TTTTAACAAGTCACACCTTA+AGG - chr7_2:58305555-58305574 None:intergenic 30.0%
! AACAAGACAAAAAAGTGTAC+TGG - chr7_2:58305783-58305802 None:intergenic 30.0%
GCCCTTACATAATATTGATA+TGG + chr7_2:58305901-58305920 Msa1064920:three_prime_UTR 30.0%
TTGTCATCAGCATCTTATTA+TGG + chr7_2:58305925-58305944 Msa1064920:three_prime_UTR 30.0%
GCATCTTATTATGGATAGTT+TGG + chr7_2:58305934-58305953 Msa1064920:three_prime_UTR 30.0%
TAGTTTGGAAAAGGAATGAA+TGG + chr7_2:58305949-58305968 Msa1064920:three_prime_UTR 30.0%
!!! ACATTTTGTATTTTAGTGGG+TGG + chr7_2:58306005-58306024 Msa1064920:three_prime_UTR 30.0%
!!! CATTTTGTATTTTAGTGGGT+GGG + chr7_2:58306006-58306025 Msa1064920:three_prime_UTR 30.0%
!!! ATTTTGTATTTTAGTGGGTG+GGG + chr7_2:58306007-58306026 Msa1064920:three_prime_UTR 30.0%
CTTACATACATAGAAACCAT+GGG - chr7_2:58306217-58306236 None:intergenic 30.0%
TCTTACATACATAGAAACCA+TGG - chr7_2:58306218-58306237 None:intergenic 30.0%
TAACATGTAATAAGGTGCAA+TGG - chr7_2:58306242-58306261 None:intergenic 30.0%
CTAGGATGTAACATGTAATA+AGG - chr7_2:58306250-58306269 None:intergenic 30.0%
! GTTACATCCTAGAAACTTTT+AGG + chr7_2:58306258-58306277 Msa1064920:three_prime_UTR 30.0%
!!! ATTTTGGTTTTCTCACCCTT+TGG - chr7_2:58303277-58303296 None:intergenic 35.0%
!! AGCTTCTGTCTAGTTGATTT+TGG - chr7_2:58303293-58303312 None:intergenic 35.0%
CTCAAAAGATCAAAGAAGAG+TGG + chr7_2:58303331-58303350 Msa1064920:CDS 35.0%
GGGATATTCCAACTCAATAA+AGG + chr7_2:58303484-58303503 Msa1064920:intron 35.0%
ACCTCCTTTAATATCCCAAA+TGG + chr7_2:58303708-58303727 Msa1064920:intron 35.0%
CCTCCTTTAATATCCCAAAT+GGG + chr7_2:58303709-58303728 Msa1064920:intron 35.0%
ATCTGCCAATTTACCCATTT+GGG - chr7_2:58303725-58303744 None:intergenic 35.0%
GAACAAAGCCTCAATTATTG+TGG + chr7_2:58303745-58303764 Msa1064920:CDS 35.0%
CAACTCTTCTATGTATTTGG+AGG - chr7_2:58303774-58303793 None:intergenic 35.0%
AGAAGAGTTGAAGCAAAAAG+TGG + chr7_2:58303784-58303803 Msa1064920:CDS 35.0%
! GAGAAATAGAGTACTACCAT+AGG - chr7_2:58303869-58303888 None:intergenic 35.0%
AGTGTGAAAACCCTAGAAAA+GGG + chr7_2:58304054-58304073 Msa1064920:CDS 35.0%
ACTTGATGTACTTGATGCTA+GGG + chr7_2:58304155-58304174 Msa1064920:CDS 35.0%
!!! TTAATGCTTTTGGAGCTCAA+AGG + chr7_2:58304452-58304471 Msa1064920:intron 35.0%
TAGGGATGGTCACAAATATT+TGG + chr7_2:58304545-58304564 Msa1064920:intron 35.0%
! TGGGAAAAGGGTATACTAAT+GGG - chr7_2:58304675-58304694 None:intergenic 35.0%
! ATGGGAAAAGGGTATACTAA+TGG - chr7_2:58304676-58304695 None:intergenic 35.0%
! ATTAGTATACCCTTTTCCCA+TGG + chr7_2:58304675-58304694 Msa1064920:intron 35.0%
! CAAGTAATCACGTGAGTTTT+AGG - chr7_2:58305036-58305055 None:intergenic 35.0%
! ATGCAAGCTCTTTCTTTTGT+TGG - chr7_2:58305329-58305348 None:intergenic 35.0%
TTGTTAAAAGACACCACCAA+AGG + chr7_2:58305566-58305585 Msa1064920:intron 35.0%
TGTTAAAAGACACCACCAAA+GGG + chr7_2:58305567-58305586 Msa1064920:intron 35.0%
TCAACAAGAATCACATGAGA+GGG - chr7_2:58305641-58305660 None:intergenic 35.0%
TTCAACAAGAATCACATGAG+AGG - chr7_2:58305642-58305661 None:intergenic 35.0%
ATCACGGATATTGTTTCACT+TGG - chr7_2:58305835-58305854 None:intergenic 35.0%
ACGATATACCCATACATTAG+CGG - chr7_2:58306044-58306063 None:intergenic 35.0%
TTAAGAGTTCTCTCATGCAA+TGG - chr7_2:58306142-58306161 None:intergenic 35.0%
! TTGTCCTTTTGCAAGAACAA+AGG + chr7_2:58306171-58306190 Msa1064920:three_prime_UTR 35.0%
! TGTCCTTTTGCAAGAACAAA+GGG + chr7_2:58306172-58306191 Msa1064920:three_prime_UTR 35.0%
ACCATGGGAATATGTTGATA+AGG - chr7_2:58306202-58306221 None:intergenic 35.0%
ACCGCATATATGGAACCAAA+GGG + chr7_2:58303259-58303278 Msa1064920:five_prime_UTR 40.0%
! ACCCTTTGGTTCCATATATG+CGG - chr7_2:58303263-58303282 None:intergenic 40.0%
GAAGCTATAAGAAGCTAGCA+TGG + chr7_2:58303307-58303326 Msa1064920:exon 40.0%
TTGTGACATCTCGAAGTTGT+TGG - chr7_2:58303361-58303380 None:intergenic 40.0%
ACAAGCTCAACTGCTGTAAT+TGG + chr7_2:58303377-58303396 Msa1064920:intron 40.0%
CTTCTCCTCCTTTATTGAGT+TGG - chr7_2:58303495-58303514 None:intergenic 40.0%
! CCCATTTGGGATATTAAAGG+AGG - chr7_2:58303712-58303731 None:intergenic 40.0%
CATCTGCCAATTTACCCATT+TGG - chr7_2:58303726-58303745 None:intergenic 40.0%
AGAGTTGAAGCAAAAAGTGG+AGG + chr7_2:58303787-58303806 Msa1064920:CDS 40.0%
GAGTTGAAGCAAAAAGTGGA+GGG + chr7_2:58303788-58303807 Msa1064920:CDS 40.0%
TGAGTCCTCAACTACTCAAA+TGG + chr7_2:58303835-58303854 Msa1064920:CDS 40.0%
CTCATCCATTTGAGTAGTTG+AGG - chr7_2:58303843-58303862 None:intergenic 40.0%
TCAAATGGATGAGCAACCTA+TGG + chr7_2:58303850-58303869 Msa1064920:CDS 40.0%
GAGTGTGAAAACCCTAGAAA+AGG + chr7_2:58304053-58304072 Msa1064920:CDS 40.0%
!! CTTTTGGAAAAGAATAGCCC+TGG + chr7_2:58304093-58304112 Msa1064920:CDS 40.0%
! GTATTGATACCAGCATACCA+GGG - chr7_2:58304113-58304132 None:intergenic 40.0%
!! AGTATTGATACCAGCATACC+AGG - chr7_2:58304114-58304133 None:intergenic 40.0%
TGGTATGCTGGTATCAATAC+TGG + chr7_2:58304113-58304132 Msa1064920:CDS 40.0%
!! ACTGGAAGCTTTTGAAGATC+TGG + chr7_2:58304131-58304150 Msa1064920:CDS 40.0%
!! CTGGAAGCTTTTGAAGATCT+GGG + chr7_2:58304132-58304151 Msa1064920:CDS 40.0%
GACTTGATGTACTTGATGCT+AGG + chr7_2:58304154-58304173 Msa1064920:CDS 40.0%
!! GTGTGAGCGTTGTACAATTT+TGG + chr7_2:58304419-58304438 Msa1064920:intron 40.0%
! TTCAAGTGGTTTGTCACCAT+GGG - chr7_2:58304694-58304713 None:intergenic 40.0%
! TTTCAAGTGGTTTGTCACCA+TGG - chr7_2:58304695-58304714 None:intergenic 40.0%
! TTTTGTTACAAGCCACCCTT+TGG - chr7_2:58305585-58305604 None:intergenic 40.0%
AATCACATGAGAGGGGAATT+TGG - chr7_2:58305633-58305652 None:intergenic 40.0%
CAACAAGAATCACATGAGAG+GGG - chr7_2:58305640-58305659 None:intergenic 40.0%
GTTGCAAGCAATCAAGAACA+CGG + chr7_2:58305724-58305743 Msa1064920:CDS 40.0%
GGCAGAATTTGATGGAATCA+CGG - chr7_2:58305851-58305870 None:intergenic 40.0%
! GGTAGGCACCTCATATATTT+TGG - chr7_2:58305872-58305891 None:intergenic 40.0%
TTATGTAAGGGCCATTGAAG+TGG - chr7_2:58305893-58305912 None:intergenic 40.0%
TGATATGCCCGCTAATGTAT+GGG + chr7_2:58306033-58306052 Msa1064920:three_prime_UTR 40.0%
CGATATACCCATACATTAGC+GGG - chr7_2:58306043-58306062 None:intergenic 40.0%
ACACCCTTTGTTCTTGCAAA+AGG - chr7_2:58306178-58306197 None:intergenic 40.0%
GCCTTATCAACATATTCCCA+TGG + chr7_2:58306198-58306217 Msa1064920:three_prime_UTR 40.0%
! CTTTGGTTCCATATATGCGG+TGG - chr7_2:58303260-58303279 None:intergenic 45.0%
CACCGCATATATGGAACCAA+AGG + chr7_2:58303258-58303277 Msa1064920:five_prime_UTR 45.0%
!! GGAGGCATCCACAATAATTG+AGG - chr7_2:58303756-58303775 None:intergenic 45.0%
GAGGGAATGAACTCTGAGTT+AGG + chr7_2:58303806-58303825 Msa1064920:CDS 45.0%
AAAGAATAGCCCTGGTATGC+TGG + chr7_2:58304101-58304120 Msa1064920:CDS 45.0%
ACTTTCCAGCTAGAAGCTGT+TGG + chr7_2:58304192-58304211 Msa1064920:CDS 45.0%
GGTTTGTCACCATGGGAAAA+GGG - chr7_2:58304687-58304706 None:intergenic 45.0%
! TGGTTTGTCACCATGGGAAA+AGG - chr7_2:58304688-58304707 None:intergenic 45.0%
!!! CGTGAGTTTTAGGTGCTCAA+GGG - chr7_2:58305026-58305045 None:intergenic 45.0%
!!! ACGTGAGTTTTAGGTGCTCA+AGG - chr7_2:58305027-58305046 None:intergenic 45.0%
TAAAAGACACCACCAAAGGG+TGG + chr7_2:58305570-58305589 Msa1064920:intron 45.0%
CGATAGTATCAATGCGCAAG+TGG + chr7_2:58305688-58305707 Msa1064920:CDS 45.0%
GTGATATGCCCGCTAATGTA+TGG + chr7_2:58306032-58306051 Msa1064920:three_prime_UTR 45.0%
!!! CAATTTTTTTTTTTTTTTTT+AGG + chr7_2:58304526-58304545 Msa1064920:intron 5.0%
!! AATAAATAAAATTTAAAAAG+AGG - chr7_2:58304992-58305011 None:intergenic 5.0%
!!! TCTTTTTAAATTTTATTTAT+TGG + chr7_2:58304991-58305010 Msa1064920:intron 5.0%
CTGCAAAGCCACCGCATATA+TGG + chr7_2:58303249-58303268 Msa1064920:five_prime_UTR 50.0%
TTCCAGCTAGAAGCTGTTGG+AGG + chr7_2:58304195-58304214 Msa1064920:CDS 50.0%
TGTTACAAGCCACCCTTTGG+TGG - chr7_2:58305582-58305601 None:intergenic 50.0%
! TGAGGTGCCTACCACTTCAA+TGG + chr7_2:58305879-58305898 Msa1064920:three_prime_UTR 50.0%
GTAAGGGCCATTGAAGTGGT+AGG - chr7_2:58305889-58305908 None:intergenic 50.0%
CTCCTCCAACAGCTTCTAGC+TGG - chr7_2:58304200-58304219 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 58303239 58306324 58303239 ID=Msa1064920;Name=Msa1064920
chr7_2 mRNA 58303239 58306324 58303239 ID=Msa1064920-mRNA-1;Parent=Msa1064920;Name=Msa1064920-mRNA-1;_AED=0.07;_eAED=0.07;_QI=87|1|1|1|1|1|4|564|149
chr7_2 exon 58303239 58303391 58303239 ID=Msa1064920-mRNA-1:exon:11043;Parent=Msa1064920-mRNA-1
chr7_2 exon 58303743 58303871 58303743 ID=Msa1064920-mRNA-1:exon:11044;Parent=Msa1064920-mRNA-1
chr7_2 exon 58304051 58304221 58304051 ID=Msa1064920-mRNA-1:exon:11045;Parent=Msa1064920-mRNA-1
chr7_2 exon 58305677 58306324 58305677 ID=Msa1064920-mRNA-1:exon:11046;Parent=Msa1064920-mRNA-1
chr7_2 five_prime_UTR 58303239 58303325 58303239 ID=Msa1064920-mRNA-1:five_prime_utr;Parent=Msa1064920-mRNA-1
chr7_2 CDS 58303326 58303391 58303326 ID=Msa1064920-mRNA-1:cds;Parent=Msa1064920-mRNA-1
chr7_2 CDS 58303743 58303871 58303743 ID=Msa1064920-mRNA-1:cds;Parent=Msa1064920-mRNA-1
chr7_2 CDS 58304051 58304221 58304051 ID=Msa1064920-mRNA-1:cds;Parent=Msa1064920-mRNA-1
chr7_2 CDS 58305677 58305760 58305677 ID=Msa1064920-mRNA-1:cds;Parent=Msa1064920-mRNA-1
chr7_2 three_prime_UTR 58305761 58306324 58305761 ID=Msa1064920-mRNA-1:three_prime_utr;Parent=Msa1064920-mRNA-1
Gene Sequence

>Msa1064920

ATGGACTCAAAAGATCAAAGAAGAGTGGCTCTCCAACAACTTCGAGATGTCACAAGCTCAACTGCTATGAACAAAGCCTCAATTATTGTGGATGCCTCCAAATACATAGAAGAGTTGAAGCAAAAAGTGGAGGGAATGAACTCTGAGTTAGGAAACGTTGAGTCCTCAACTACTCAAATGGATGAGCAACCTATGGTGAGTGTGAAAACCCTAGAAAAGGGTTTCATGATTAATGTGCTTTTGGAAAAGAATAGCCCTGGTATGCTGGTATCAATACTGGAAGCTTTTGAAGATCTGGGACTTGATGTACTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTAGAAGCTGTTGGAGGAGATAGTCATAAGGACGATAGTATCAATGCGCAAGTGGTGAAACAAGCAGTGTTGCAAGCAATCAAGAACACGGACTCATCAAAATGA

Protein sequence

>Msa1064920

MDSKDQRRVALQQLRDVTSSTAMNKASIIVDASKYIEELKQKVEGMNSELGNVESSTTQMDEQPMVSVKTLEKGFMINVLLEKNSPGMLVSILEAFEDLGLDVLDARVSCEDTFQLEAVGGDSHKDDSINAQVVKQAVLQAIKNTDSSK*