AlfalfaGEDB | Msa1064920

M. sativa cultivar zhongmu-4 / Msa1064920

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1064920	XP_024626508.1	97.638	127	3	0	23	149	1	127	1.29e-83	251

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1064920	G7KX21	97.638	127	3	0	23	149	6	132	6.91e-84	251

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1064920	0.804072	2.574535e-49	-8.615850e-47
Msa0008330	Msa1064920	0.800845	1.190750e-48	-8.615850e-47
Msa0008850	Msa1064920	0.801907	7.215028e-49	-8.615850e-47
Msa0016830	Msa1064920	0.813799	2.132025e-51	-8.615850e-47
Msa0017120	Msa1064920	0.800705	1.271166e-48	-8.615850e-47
Msa0024330	Msa1064920	0.806092	9.727227e-50	-8.615850e-47
Msa0026120	Msa1064920	0.817790	2.747283e-52	-8.615850e-47
Msa0028050	Msa1064920	0.807712	4.421896e-50	-8.615850e-47
Msa0028410	Msa1064920	0.801458	8.919612e-49	-8.615850e-47
Msa0028450	Msa1064920	0.809824	1.563306e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1064920	MtrunA17_Chr7g0244441	97.638	127	3	0	23	149	6	132	1.33e-87	251
Msa1064920	MtrunA17_Chr5g0437991	56.209	153	62	2	1	148	25	177	2.04e-50	159
Msa1064920	MtrunA17_Chr3g0106861	47.682	151	72	2	1	144	1	151	3.73e-37	124

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1064920	AT2G40435.1	53.378	148	64	2	1	143	1	148	5.50e-47	150
Msa1064920	AT3G56220.1	54.225	142	64	1	8	148	13	154	4.60e-46	147
Msa1064920	AT2G40435.3	56.800	125	49	2	1	120	1	125	3.98e-42	137
Msa1064920	AT2G40435.2	56.800	125	49	2	1	120	1	125	4.12e-42	136
Msa1064920	AT3G56220.2	57.522	113	48	0	8	120	13	125	1.04e-39	130

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Find 60 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATATCGTATCTATA+GGG	0.419953	7_2:+58306071	Msa1064920:three_prime_UTR
AAAGAATAGCCCTGGTATGC+TGG	0.482593	7_2:+58304101	Msa1064920:CDS
AAATTCTGCCAAAATATATG+AGG	0.508014	7_2:+58305861	Msa1064920:three_prime_UTR
ACACCCTTTGTTCTTGCAAA+AGG	0.431451	7_2:-58306175	None:intergenic
ACCATGGGAATATGTTGATA+AGG	0.486547	7_2:-58306199	None:intergenic
ACCCTTTGGTTCCATATATG+CGG	0.574436	7_2:-58303260	None:intergenic
ACCGCATATATGGAACCAAA+GGG	0.602352	7_2:+58303259	Msa1064920:five_prime_UTR
ACGATATACCCATACATTAG+CGG	0.675005	7_2:-58306041	None:intergenic
ACTTGATGTACTTGATGCTA+GGG	0.510074	7_2:+58304155	Msa1064920:CDS
ACTTTCCAGCTAGAAGCTGT+TGG	0.533098	7_2:+58304192	Msa1064920:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATTCCAACTCAATAAAGG+AGG	+	chr7_2:58303487-58303506	Msa1064920:intron	30.0%
AATATCCCAAATGGGTAAAT+TGG	+	chr7_2:58303717-58303736	Msa1064920:intron	30.0%
CTTCAACTCTTCTATGTATT+TGG	-	chr7_2:58303777-58303796	None:intergenic	30.0%
ATCTAAATACGCAAAAGATG+TGG	-	chr7_2:58303987-58304006	None:intergenic	30.0%
AGTGTTATATATACTCCTCT+TGG	-	chr7_2:58304811-58304830	None:intergenic	30.0%
CTAAAAGACACCTTCATAAA+AGG	-	chr7_2:58305502-58305521	None:intergenic	30.0%
AAAGTGAAAATCACACCTTA+AGG	+	chr7_2:58305537-58305556	Msa1064920:intron	30.0%
GCCCTTACATAATATTGATA+TGG	+	chr7_2:58305901-58305920	Msa1064920:three_prime_UTR	30.0%
TTGTCATCAGCATCTTATTA+TGG	+	chr7_2:58305925-58305944	Msa1064920:three_prime_UTR	30.0%
GCATCTTATTATGGATAGTT+TGG	+	chr7_2:58305934-58305953	Msa1064920:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	58303239	58306324	58303239	ID=Msa1064920;Name=Msa1064920
chr7_2	mRNA	58303239	58306324	58303239	ID=Msa1064920-mRNA-1;Parent=Msa1064920;Name=Msa1064920-mRNA-1;_AED=0.07;_eAED=0.07;_QI=87\|1\|1\|1\|1\|1\|4\|564\|149
chr7_2	exon	58303239	58303391	58303239	ID=Msa1064920-mRNA-1:exon:11043;Parent=Msa1064920-mRNA-1
chr7_2	exon	58303743	58303871	58303743	ID=Msa1064920-mRNA-1:exon:11044;Parent=Msa1064920-mRNA-1
chr7_2	exon	58304051	58304221	58304051	ID=Msa1064920-mRNA-1:exon:11045;Parent=Msa1064920-mRNA-1
chr7_2	exon	58305677	58306324	58305677	ID=Msa1064920-mRNA-1:exon:11046;Parent=Msa1064920-mRNA-1
chr7_2	five_prime_UTR	58303239	58303325	58303239	ID=Msa1064920-mRNA-1:five_prime_utr;Parent=Msa1064920-mRNA-1
chr7_2	CDS	58303326	58303391	58303326	ID=Msa1064920-mRNA-1:cds;Parent=Msa1064920-mRNA-1
chr7_2	CDS	58303743	58303871	58303743	ID=Msa1064920-mRNA-1:cds;Parent=Msa1064920-mRNA-1
chr7_2	CDS	58304051	58304221	58304051	ID=Msa1064920-mRNA-1:cds;Parent=Msa1064920-mRNA-1
chr7_2	CDS	58305677	58305760	58305677	ID=Msa1064920-mRNA-1:cds;Parent=Msa1064920-mRNA-1
chr7_2	three_prime_UTR	58305761	58306324	58305761	ID=Msa1064920-mRNA-1:three_prime_utr;Parent=Msa1064920-mRNA-1

Gene Sequence

>Msa1064920

ATGGACTCAAAAGATCAAAGAAGAGTGGCTCTCCAACAACTTCGAGATGTCACAAGCTCAACTGCTATGAACAAAGCCTCAATTATTGTGGATGCCTCCAAATACATAGAAGAGTTGAAGCAAAAAGTGGAGGGAATGAACTCTGAGTTAGGAAACGTTGAGTCCTCAACTACTCAAATGGATGAGCAACCTATGGTGAGTGTGAAAACCCTAGAAAAGGGTTTCATGATTAATGTGCTTTTGGAAAAGAATAGCCCTGGTATGCTGGTATCAATACTGGAAGCTTTTGAAGATCTGGGACTTGATGTACTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTAGAAGCTGTTGGAGGAGATAGTCATAAGGACGATAGTATCAATGCGCAAGTGGTGAAACAAGCAGTGTTGCAAGCAATCAAGAACACGGACTCATCAAAATGA

Protein sequence

>Msa1064920

MDSKDQRRVALQQLRDVTSSTAMNKASIIVDASKYIEELKQKVEGMNSELGNVESSTTQMDEQPMVSVKTLEKGFMINVLLEKNSPGMLVSILEAFEDLGLDVLDARVSCEDTFQLEAVGGDSHKDDSINAQVVKQAVLQAIKNTDSSK*