AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0975450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0975450 MtrunA17_Chr6g0454281 81.143 175 33 0 45 219 2 176 3.98e-101 291
Msa0975450 MtrunA17_Chr6g0454251 83.041 171 29 0 47 217 1 171 6.84e-101 298
Msa0975450 MtrunA17_Chr6g0454211 84.946 186 24 1 36 217 276 461 2.80e-99 305
Msa0975450 MtrunA17_Chr6g0454291 87.135 171 22 0 47 217 1 171 1.86e-97 291
Msa0975450 MtrunA17_Chr6g0454331 80.925 173 31 1 47 217 1 173 7.13e-96 288
Msa0975450 MtrunA17_Chr6g0454351 75.882 170 41 0 48 217 7 176 1.96e-90 273
Msa0975450 MtrunA17_Chr6g0454401 72.159 176 48 1 45 219 2 177 2.15e-87 266
Msa0975450 MtrunA17_Chr6g0453951 70.556 180 52 1 39 217 42 221 2.25e-87 267
Msa0975450 MtrunA17_Chr6g0454181 67.630 173 56 0 45 217 2 174 2.47e-84 258
Msa0975450 MtrunA17_Chr6g0454191 66.667 174 57 1 45 217 2 175 4.44e-82 252
Msa0975450 MtrunA17_Chr6g0454341 66.471 170 54 1 48 217 5 171 1.14e-80 249
Msa0975450 MtrunA17_Chr3g0078841 67.059 170 53 1 48 217 5 171 6.30e-80 247
Msa0975450 MtrunA17_Chr6g0454231 62.189 201 67 3 22 217 215 411 1.68e-79 245
Msa0975450 MtrunA17_Chr6g0454361 73.653 167 44 0 51 217 9 175 3.90e-79 245
Msa0975450 MtrunA17_Chr6g0453961 65.318 173 60 0 45 217 11 183 4.45e-78 242
Msa0975450 MtrunA17_Chr7g0217881 68.966 174 54 0 45 218 2 175 1.06e-77 241
Msa0975450 MtrunA17_Chr6g0454301 65.027 183 61 1 35 217 245 424 1.64e-76 244
Msa0975450 MtrunA17_Chr8g0336271 61.988 171 61 2 47 217 4 170 6.56e-76 230
Msa0975450 MtrunA17_Chr6g0452771 68.208 173 55 0 45 217 2 174 8.78e-75 233
Msa0975450 MtrunA17_Chr8g0336331 62.353 170 60 2 48 217 5 170 7.06e-74 231
Msa0975450 MtrunA17_Chr6g0454141 61.850 173 66 0 45 217 2 174 5.09e-73 229
Msa0975450 MtrunA17_Chr8g0359821 63.584 173 61 2 45 217 2 172 5.37e-73 229
Msa0975450 MtrunA17_Chr6g0454321 63.529 170 59 1 48 217 5 171 2.16e-72 231
Msa0975450 MtrunA17_Chr6g0454321 75.000 132 33 0 38 169 489 620 5.81e-67 217
Msa0975450 MtrunA17_Chr6g0454261 62.428 173 65 0 45 217 2 174 4.02e-72 227
Msa0975450 MtrunA17_Chr6g0454151 66.474 173 58 0 45 217 2 174 6.58e-72 226
Msa0975450 MtrunA17_Chr6g0454201 73.054 167 45 0 51 217 9 175 6.71e-72 226
Msa0975450 MtrunA17_Chr6g0454131 63.006 173 63 1 45 217 2 173 2.04e-65 209
Msa0975450 MtrunA17_Chr5g0426411 56.140 171 69 3 49 218 8 173 4.08e-63 194
Msa0975450 MtrunA17_Chr6g0454121 61.272 173 66 1 45 217 2 173 9.93e-63 202
Msa0975450 MtrunA17_Chr5g0423981 67.669 133 43 0 51 183 8 140 4.91e-61 197
Msa0975450 MtrunA17_Chr5g0426431 56.627 166 66 3 53 217 12 172 6.95e-58 189
Msa0975450 MtrunA17_Chr3g0092641 55.689 167 68 3 52 217 11 172 8.51e-58 189
Msa0975450 MtrunA17_Chr2g0278711 55.090 167 67 2 51 217 9 167 1.25e-55 184
Msa0975450 MtrunA17_Chr3g0118751 49.704 169 80 2 49 217 2 165 1.08e-51 173
Msa0975450 MtrunA17_Chr3g0118671 49.112 169 81 2 49 217 2 165 1.37e-50 171
Msa0975450 MtrunA17_Chr3g0118691 48.235 170 83 2 50 219 12 176 2.55e-50 170
Msa0975450 MtrunA17_Chr3g0118771 48.214 168 82 2 50 217 18 180 9.08e-49 166
Msa0975450 MtrunA17_Chr3g0118711 45.143 175 91 2 43 217 3 172 3.66e-48 164
Msa0975450 MtrunA17_Chr3g0118701 47.619 168 83 2 50 217 12 174 6.74e-48 164
Msa0975450 MtrunA17_Chr4g0050341 47.701 174 88 2 44 217 10 180 3.02e-45 157
Msa0975450 MtrunA17_Chr3g0118661 43.452 168 90 2 50 217 10 172 6.80e-42 147
Msa0975450 MtrunA17_Chr8g0355011 91.667 60 5 0 157 216 38 97 1.06e-30 115
Msa0975450 MtrunA17_Chr3g0118731 40.870 115 63 2 105 219 28 137 6.44e-23 90.9
Msa0975450 MtrunA17_Chr6g0453941 70.968 62 13 2 45 105 2 59 1.78e-20 87.0
Msa0975450 MtrunA17_Chr3g0118741 63.793 58 21 0 49 106 2 59 2.91e-20 81.3
Msa0975450 MtrunA17_Chr3g0112771 33.537 164 91 5 55 217 14 160 1.22e-17 80.9
Msa0975450 MtrunA17_Chr5g0412131 29.670 182 98 5 50 220 9 171 2.69e-17 79.7
Msa0975450 MtrunA17_Chr7g0218841 30.952 168 104 5 52 219 5 160 6.07e-17 78.6
Msa0975450 MtrunA17_Chr7g0218831 29.167 168 107 4 52 219 5 160 9.70e-17 78.2
Msa0975450 MtrunA17_Chr3g0112761 31.288 163 95 5 55 217 10 155 2.24e-16 77.0
Msa0975450 MtrunA17_Chr7g0218821 29.310 174 109 3 52 218 4 170 3.26e-16 76.6
Msa0975450 MtrunA17_Chr6g0464881 30.120 166 102 4 46 210 4 156 3.65e-16 76.6
Msa0975450 MtrunA17_Chr5g0412101 28.333 180 103 5 50 220 9 171 1.57e-15 74.7
Msa0975450 MtrunA17_Chr7g0218791 25.749 167 111 4 52 214 4 161 1.64e-15 74.7
Msa0975450 MtrunA17_Chr5g0412111 30.636 173 105 5 52 220 4 165 3.49e-15 73.6
Msa0975450 MtrunA17_Chr7g0218811 29.341 167 107 3 52 218 14 169 4.94e-15 73.2
Msa0975450 MtrunA17_Chr4g0032331 32.934 167 93 4 55 217 10 161 6.37e-15 72.8
Msa0975450 MtrunA17_Chr6g0453981 65.909 44 15 0 174 217 1 44 1.30e-13 67.4
Msa0975450 MtrunA17_Chr7g0267931 72.973 37 9 1 58 93 25 61 8.81e-13 61.2
Msa0975450 MtrunA17_Chr6g0454381 63.636 44 16 0 174 217 1 44 3.17e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0975450 AT1G22370.2 57.059 170 68 2 48 217 8 172 3.28e-62 201
Msa0975450 AT1G22400.1 55.357 168 70 2 50 217 10 172 1.71e-60 197
Msa0975450 AT1G22340.1 55.952 168 69 2 50 217 10 172 2.38e-60 196
Msa0975450 AT1G78270.1 54.190 179 73 3 39 217 3 172 6.69e-60 196
Msa0975450 AT1G22380.1 54.118 170 73 2 48 217 8 172 1.08e-58 192
Msa0975450 AT1G22360.1 54.167 168 72 2 50 217 7 169 3.14e-58 191
Msa0975450 AT1G22360.2 54.167 168 72 2 50 217 7 169 3.50e-58 191
Msa0975450 AT3G02100.1 31.492 181 113 5 41 218 3 175 7.50e-23 96.3
Msa0975450 AT5G05860.1 32.544 169 97 5 53 220 9 161 3.03e-17 80.1
Msa0975450 AT3G11340.1 30.286 175 98 5 46 217 2 155 4.50e-17 79.7
Msa0975450 AT5G38010.1 32.203 177 100 5 46 217 3 164 3.66e-16 77.0
Msa0975450 AT3G46670.1 34.682 173 94 7 49 217 2 159 3.86e-16 77.0
Msa0975450 AT5G05900.1 29.825 171 105 4 53 220 8 166 1.33e-15 75.5
Msa0975450 AT3G46660.1 33.117 154 89 4 46 199 7 146 4.76e-15 73.6
Msa0975450 AT5G59580.1 32.468 154 81 5 51 200 7 141 4.82e-15 73.6
Msa0975450 AT3G55700.1 31.098 164 102 4 55 217 10 163 7.33e-15 73.2
Msa0975450 AT5G05890.1 30.409 171 104 4 53 220 8 166 2.30e-14 71.6
Msa0975450 AT5G59590.1 33.553 152 75 6 55 200 12 143 6.01e-14 70.5
Msa0975450 AT3G46650.1 29.050 179 99 5 49 220 6 163 7.90e-14 70.1
Msa0975450 AT5G05880.1 29.762 168 105 4 53 220 8 162 8.81e-14 70.1
Msa0975450 AT5G05870.1 30.952 168 98 5 53 216 8 161 1.43e-13 69.3
Msa0975450 AT2G36970.1 28.824 170 106 4 51 212 8 170 1.48e-12 66.6
Msa0975450 AT4G15490.1 29.697 165 96 6 53 209 8 160 4.19e-12 65.1
Msa0975450 AT3G21560.1 30.409 171 94 7 52 210 11 168 7.99e-12 64.3
Msa0975450 AT4G15500.1 27.059 170 104 4 46 209 2 157 1.75e-11 63.2
Msa0975450 AT3G55710.1 25.862 174 100 7 55 219 10 163 1.90e-11 63.2
Msa0975450 AT3G46690.1 27.119 177 106 5 46 217 2 160 4.18e-11 62.0

Find 38 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATTGGTGTTAGGCCATC+TGG 0.232785 6_4:+9227980 None:intergenic
GAGATAAAGCCAATATTTCT+TGG 0.264338 6_4:+9228257 None:intergenic
GCAAAACTTCTTCACATTAG+AGG 0.278782 6_4:-9228109 Msa0975450:CDS
TCCACAGATCCAAGAAATAT+TGG 0.280513 6_4:-9228266 Msa0975450:intron
GTGAGACCATCTAAGGCTTT+TGG 0.292173 6_4:+9228025 None:intergenic
GTTTCAACAATGGATTGATA+TGG 0.324262 6_4:+9228134 None:intergenic
TTTAGTACATTGTTGGATAA+AGG 0.334818 6_4:-9227710 Msa0975450:CDS
AAAGGTCTCATACCACTAAA+AGG 0.351638 6_4:-9227692 Msa0975450:CDS
TCAGAAACTATGCAAGTAAC+TGG 0.360472 6_4:+9227833 None:intergenic
GCTGGACTAAAGAAAACAAC+TGG 0.391340 6_4:+9227764 None:intergenic
AAAATCAGTGAGACCATCTA+AGG 0.393672 6_4:+9228018 None:intergenic
CATCACCTTCTATTGGTGTT+AGG 0.403299 6_4:+9227972 None:intergenic
AAGTTCTTCAGCAGCTTGTA+TGG 0.406074 6_4:+9227793 None:intergenic
CTTTATCTCTATTAAACCAT+TGG 0.430570 6_4:-9228243 Msa0975450:CDS
ACATCGCCATCACCTTCTAT+TGG 0.440363 6_4:+9227965 None:intergenic
CTATTGGTGTTAGGCCATCT+GGG 0.453663 6_4:+9227981 None:intergenic
CTTAATGACTCTGCAACATC+TGG 0.459566 6_4:-9227866 Msa0975450:CDS
GAAGATCGCGGAAAGGTTGT+AGG 0.465807 6_4:+9227897 None:intergenic
GGTTCTATTCTCTATTTATG+AGG 0.467014 6_4:-9230931 Msa0975450:CDS
GGATTGATATGGCCTTGAAC+TGG 0.477576 6_4:+9228145 None:intergenic
AAAGGTCCAAAAGCCTTAGA+TGG 0.479732 6_4:-9228031 Msa0975450:CDS
TTAATCCCATGTCCAGTTCA+AGG 0.494157 6_4:-9228157 Msa0975450:CDS
GATGGCCTAACACCAATAGA+AGG 0.496992 6_4:-9227977 Msa0975450:CDS
AAACGTTTGCTCAAATCAAA+AGG 0.504638 6_4:-9228049 Msa0975450:CDS
GTGTTTGAATGTTGAGCAAA+GGG 0.549275 6_4:+9228217 None:intergenic
AACTTTGAAACAATCCCAGA+TGG 0.567352 6_4:-9227995 Msa0975450:CDS
TGTGTTTGAATGTTGAGCAA+AGG 0.591351 6_4:+9228216 None:intergenic
TACACATAATAGTACCTGCA+TGG 0.620547 6_4:+9231732 None:intergenic
CATGGGATTAACACAGCATG+AGG 0.630220 6_4:+9228169 None:intergenic
GAAACTATGCAAGTAACTGG+AGG 0.640160 6_4:+9227836 None:intergenic
GTTGAGCAAAGGGAAGCCAA+TGG 0.640398 6_4:+9228227 None:intergenic
ATATGGCCTTGAACTGGACA+TGG 0.642941 6_4:+9228151 None:intergenic
CTAACACCAATAGAAGGTGA+TGG 0.648042 6_4:-9227971 Msa0975450:CDS
CTGGACTAAAGAAAACAACT+GGG 0.650926 6_4:+9227765 None:intergenic
AAACTATGCAAGTAACTGGA+GGG 0.661646 6_4:+9227837 None:intergenic
TATGGCCTTGAACTGGACAT+GGG 0.664724 6_4:+9228152 None:intergenic
CTAGCAAGAAGATCGCGGAA+AGG 0.666578 6_4:+9227890 None:intergenic
TAAGTCTAGCAAGAAGATCG+CGG 0.669097 6_4:+9227885 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATAAATCAATTTGTTTTT+AGG + chr6_4:9227735-9227754 None:intergenic 10.0%
!!! TATTTTAAATTTGAATACAA+AGG + chr6_4:9228100-9228119 None:intergenic 10.0%
!! CTAAAAATAATCAAATTATA+TGG - chr6_4:9228211-9228230 Msa0975450:CDS 10.0%
!!! AATTTATAGTAATATGTTTT+AGG - chr6_4:9228643-9228662 Msa0975450:intron 10.0%
!!! ATTCAAATCATATATTGATT+TGG + chr6_4:9227768-9227787 None:intergenic 15.0%
!!! CAAATTTAAAATACCATTTT+TGG - chr6_4:9228107-9228126 Msa0975450:CDS 15.0%
!!! ACTTAATTTTTAACTAACTT+TGG + chr6_4:9228248-9228267 None:intergenic 15.0%
!! ATGTTGATATAAATATTAAG+TGG - chr6_4:9228306-9228325 Msa0975450:intron 15.0%
!! AATTCAAAAATACTTACAAT+TGG + chr6_4:9229068-9229087 None:intergenic 15.0%
!! ATTTCATTTCATAATAAGAA+TGG - chr6_4:9229947-9229966 Msa0975450:intron 15.0%
!! TTTCATTTCATAATAAGAAT+GGG - chr6_4:9229948-9229967 Msa0975450:intron 15.0%
!! AAATATTAATAGAATGCATT+TGG - chr6_4:9230690-9230709 Msa0975450:intron 15.0%
!! TTATAATCAACTTTAATTCA+TGG - chr6_4:9230984-9231003 Msa0975450:intron 15.0%
!!! AAATTTTTAAGAGTAAAGAT+AGG - chr6_4:9231032-9231051 Msa0975450:intron 15.0%
!!! TTAGATTGTTTCTAATCTTT+TGG - chr6_4:9227705-9227724 Msa0975450:CDS 20.0%
!! TGTTTAGAAAATCAATGTAT+TGG - chr6_4:9227824-9227843 Msa0975450:CDS 20.0%
!!! TTGTTTCGTAATCTTATTTT+AGG - chr6_4:9228021-9228040 Msa0975450:CDS 20.0%
!!! ATTTAAAATACCATTTTTGG+TGG - chr6_4:9228110-9228129 Msa0975450:CDS 20.0%
!!! AATTAGGTCTAAACTTTTTT+TGG - chr6_4:9228174-9228193 Msa0975450:CDS 20.0%
!!! TAATTTTTAACTAACTTTGG+AGG + chr6_4:9228245-9228264 None:intergenic 20.0%
!! TAATATAAATCCAAGATGTA+CGG - chr6_4:9228593-9228612 Msa0975450:intron 20.0%
!!! AAAGAAGAGGAATTTTTTAT+TGG + chr6_4:9228905-9228924 None:intergenic 20.0%
!!! TTTTGTTTCTTTTGAATTCA+AGG - chr6_4:9228966-9228985 Msa0975450:intron 20.0%
!!! TGTAAGTATTTTTGAATTCA+AGG - chr6_4:9229070-9229089 Msa0975450:intron 20.0%
!! CTTAAGCATAAGTTAAAATA+GGG - chr6_4:9229260-9229279 Msa0975450:intron 20.0%
!! TCTATTTATAGACTATACTA+AGG + chr6_4:9229387-9229406 None:intergenic 20.0%
!! TTTATCAAAATTAGAGCTTT+AGG - chr6_4:9229444-9229463 Msa0975450:intron 20.0%
!!! TGTTACTTTCTTTTTAAATG+TGG - chr6_4:9229916-9229935 Msa0975450:intron 20.0%
!! TCTAATAGAATGCATTAAAT+GGG - chr6_4:9230662-9230681 Msa0975450:intron 20.0%
!!! TTAGAAAAGTTTTTAGTAGA+GGG + chr6_4:9230961-9230980 None:intergenic 20.0%
!!! ATTAGAAAAGTTTTTAGTAG+AGG + chr6_4:9230962-9230981 None:intergenic 20.0%
!!! TATTCATTTTAGTACATTGT+TGG - chr6_4:9231695-9231714 Msa0975450:intron 20.0%
!! GTTTGGAATTTAAAGTTTCT+AGG + chr6_4:9227978-9227997 None:intergenic 25.0%
!!! TAGAGTTCTAGATAGAAATT+AGG + chr6_4:9228073-9228092 None:intergenic 25.0%
!! ACTACAATTTTGCTGAAATT+AGG - chr6_4:9228158-9228177 Msa0975450:CDS 25.0%
!!! TAATATTCTTAGTTCTGTTC+AGG - chr6_4:9228460-9228479 Msa0975450:intron 25.0%
! ATTTGCAAAATTTGCAAAGT+AGG + chr6_4:9228733-9228752 None:intergenic 25.0%
! TAAAAACCTATCATTTGTAG+TGG - chr6_4:9228820-9228839 Msa0975450:intron 25.0%
! AAAAACCTATCATTTGTAGT+GGG - chr6_4:9228821-9228840 Msa0975450:intron 25.0%
!!! TTTTTTATTGGTTTCAATGC+AGG + chr6_4:9228893-9228912 None:intergenic 25.0%
! ATAATTGGAAAACTCAAGAA+TGG + chr6_4:9228932-9228951 None:intergenic 25.0%
!!! CAAAAGAAACAAAAAGTATC+AGG + chr6_4:9228960-9228979 None:intergenic 25.0%
!!! AAGTATTTTTGAATTCAAGG+AGG - chr6_4:9229073-9229092 Msa0975450:intron 25.0%
!!! CCTATTTTAACTTATGCTTA+AGG + chr6_4:9229262-9229281 None:intergenic 25.0%
! CCTTAAGCATAAGTTAAAAT+AGG - chr6_4:9229259-9229278 Msa0975450:intron 25.0%
! CTTTAAATTACTAGAGCTTT+AGG + chr6_4:9229691-9229710 None:intergenic 25.0%
!!! TACATTACATGTACCTTTTT+TGG - chr6_4:9229831-9229850 Msa0975450:intron 25.0%
!! GAAAGTAACATGTTTTCTAA+GGG + chr6_4:9229906-9229925 None:intergenic 25.0%
!! AGAAAGTAACATGTTTTCTA+AGG + chr6_4:9229907-9229926 None:intergenic 25.0%
!! CTTTCTTTTTAAATGTGGTT+AGG - chr6_4:9229921-9229940 Msa0975450:intron 25.0%
! CTTGAACAATATAAATTAGC+TGG - chr6_4:9229979-9229998 Msa0975450:intron 25.0%
! AACTGAATGAAAAAGTTAGA+TGG + chr6_4:9230140-9230159 None:intergenic 25.0%
! CAAACACATCTCAAAATATA+AGG + chr6_4:9230197-9230216 None:intergenic 25.0%
!! TTCCTTATATTTCTAATCCA+CGG + chr6_4:9230239-9230258 None:intergenic 25.0%
! TGTTGTTCAGTTATATACAA+AGG + chr6_4:9230264-9230283 None:intergenic 25.0%
!!! AGTGGTTTTCTTTTTTTGAA+GGG + chr6_4:9230319-9230338 None:intergenic 25.0%
!!! TAGTGGTTTTCTTTTTTTGA+AGG + chr6_4:9230320-9230339 None:intergenic 25.0%
! TCAAAAAAAGAAAACCACTA+TGG - chr6_4:9230320-9230339 Msa0975450:intron 25.0%
! TGAATGAGAAACAACAAATA+TGG + chr6_4:9230370-9230389 None:intergenic 25.0%
!! ATCTTTTTCCTTATATTCTC+CGG + chr6_4:9230485-9230504 None:intergenic 25.0%
! AGGAAAAAGATTGAATATAG+AGG - chr6_4:9230494-9230513 Msa0975450:intron 25.0%
! AAAAAGATTGAATATAGAGG+TGG - chr6_4:9230497-9230516 Msa0975450:intron 25.0%
! CAACAAAGACATTGTATATA+TGG - chr6_4:9230549-9230568 Msa0975450:intron 25.0%
!!! AGATTTTCAACTTGCTTTAT+TGG - chr6_4:9230594-9230613 Msa0975450:intron 25.0%
!!! GATTTTCAACTTGCTTTATT+GGG - chr6_4:9230595-9230614 Msa0975450:intron 25.0%
! GTCTAATAGAATGCATTAAA+TGG - chr6_4:9230661-9230680 Msa0975450:intron 25.0%
! AACAATGTTAGACCTTAATT+GGG - chr6_4:9230932-9230951 Msa0975450:CDS 25.0%
! AAGATAAGAGACAAAAGATA+AGG + chr6_4:9231122-9231141 None:intergenic 25.0%
! CTTTATCTCTATTAAACCAT+TGG - chr6_4:9231169-9231188 Msa0975450:intron 25.0%
! TTTAGTACATTGTTGGATAA+AGG - chr6_4:9231702-9231721 Msa0975450:intron 25.0%
TCAAATACAAGATGAAACGA+AGG + chr6_4:9228000-9228019 None:intergenic 30.0%
TACAAATCTACCACCAAAAA+TGG + chr6_4:9228123-9228142 None:intergenic 30.0%
!!! CAGCAAAATTGTAGTTTTGA+AGG + chr6_4:9228153-9228172 None:intergenic 30.0%
!!! CCAGTTTTAAGACACAAAAT+TGG + chr6_4:9228381-9228400 None:intergenic 30.0%
! CCAATTTTGTGTCTTAAAAC+TGG - chr6_4:9228378-9228397 Msa0975450:intron 30.0%
GGTTCTATTCTCTATTTATG+AGG - chr6_4:9228481-9228500 Msa0975450:intron 30.0%
TGTCAAATCTATGATCAAGA+TGG - chr6_4:9228569-9228588 Msa0975450:intron 30.0%
GTCAAATCTATGATCAAGAT+GGG - chr6_4:9228570-9228589 Msa0975450:intron 30.0%
AAGTATCAGGAAGACATAAT+TGG + chr6_4:9228947-9228966 None:intergenic 30.0%
! TGTTTCTTTTGAATTCAAGG+AGG - chr6_4:9228969-9228988 Msa0975450:intron 30.0%
CATGGCAAAATACTTACAAT+TGG + chr6_4:9229172-9229191 None:intergenic 30.0%
! TAATTTAGAACTCAAGCTCA+TGG + chr6_4:9229190-9229209 None:intergenic 30.0%
ATTTCGAACATGATTTCATC+AGG + chr6_4:9229227-9229246 None:intergenic 30.0%
GATGAAATCATGTTCGAAAT+TGG - chr6_4:9229227-9229246 Msa0975450:intron 30.0%
GCATAAGTTAAAATAGGGAT+AGG - chr6_4:9229265-9229284 Msa0975450:intron 30.0%
AGTTAAAATAGGGATAGGAA+TGG - chr6_4:9229270-9229289 Msa0975450:intron 30.0%
CATTAAGCTAATAACTGACT+TGG + chr6_4:9229329-9229348 None:intergenic 30.0%
TATGTCGAAGCATATGATTT+CGG + chr6_4:9229570-9229589 None:intergenic 30.0%
CGACATATAAACATTGCATT+AGG - chr6_4:9229583-9229602 Msa0975450:intron 30.0%
ACAATATAAATTAGCTGGTG+TGG - chr6_4:9229984-9230003 Msa0975450:intron 30.0%
CAGTTTGATATCATGAATGA+AGG - chr6_4:9230155-9230174 Msa0975450:intron 30.0%
! AGATTATTACCATTTTACCG+TGG - chr6_4:9230219-9230238 Msa0975450:intron 30.0%
ATTTCTAATCCACGGTAAAA+TGG + chr6_4:9230231-9230250 None:intergenic 30.0%
!! TACCGTGGATTAGAAATATA+AGG - chr6_4:9230234-9230253 Msa0975450:intron 30.0%
CTGAACAACAAAAAATGAAG+AGG - chr6_4:9230274-9230293 Msa0975450:intron 30.0%
AAAAGAAAACCACTATGGTT+TGG - chr6_4:9230325-9230344 Msa0975450:intron 30.0%
GAAAAGCTATTACATGAGAA+AGG + chr6_4:9230396-9230415 None:intergenic 30.0%
TCTGCAGGAATACAAAAAAA+AGG - chr6_4:9230442-9230461 Msa0975450:intron 30.0%
ATGTTATCCCTATTGTAGAA+TGG + chr6_4:9230791-9230810 None:intergenic 30.0%
GTCTAAATTCGATGTATCTT+AGG + chr6_4:9230832-9230851 None:intergenic 30.0%
CAACAATGTTAGACCTTAAT+TGG - chr6_4:9230931-9230950 Msa0975450:CDS 30.0%
GAGATAAAGCCAATATTTCT+TGG + chr6_4:9231158-9231177 None:intergenic 30.0%
!! GTTTCAACAATGGATTGATA+TGG + chr6_4:9231281-9231300 None:intergenic 30.0%
!! AGTTTTGCTAGTTTCAACAA+TGG + chr6_4:9231291-9231310 None:intergenic 30.0%
AAACGTTTGCTCAAATCAAA+AGG - chr6_4:9231363-9231382 Msa0975450:intron 30.0%
AGTCAAAAATGTACATGCAT+TGG + chr6_4:9231673-9231692 None:intergenic 30.0%
TACAAGATGAAACGAAGGTT+TGG + chr6_4:9227995-9228014 None:intergenic 35.0%
TGACTTTACTAAGACGTAAG+TGG - chr6_4:9228267-9228286 Msa0975450:intron 35.0%
CACTTACTTCATATGTTGCA+AGG + chr6_4:9228669-9228688 None:intergenic 35.0%
CTTGCAACATATGAAGTAAG+TGG - chr6_4:9228667-9228686 Msa0975450:intron 35.0%
CAAGAATGGAAACAAAGAAG+AGG + chr6_4:9228918-9228937 None:intergenic 35.0%
AGCTGGTGTAAAACATTCTA+AGG + chr6_4:9228999-9229018 None:intergenic 35.0%
CTTACAATTGGTACTTACGA+AGG + chr6_4:9229056-9229075 None:intergenic 35.0%
AGCTGGTGTAAAACATTCTA+AGG + chr6_4:9228999-9229018 None:intergenic 35.0%
CTTACAATTGGTACTTACGA+AGG + chr6_4:9229056-9229075 None:intergenic 35.0%
TTCAGAGAGATCAAGTCTTT+AGG + chr6_4:9229733-9229752 None:intergenic 35.0%
TCTGTGTGTTGTAAATCATC+AGG - chr6_4:9229856-9229875 Msa0975450:intron 35.0%
TCCATCTTCAAATATTCTGC+AGG - chr6_4:9230427-9230446 Msa0975450:intron 35.0%
TCCTGCAGAATATTTGAAGA+TGG + chr6_4:9230431-9230450 None:intergenic 35.0%
AGATTGAATATAGAGGTGGA+AGG - chr6_4:9230501-9230520 Msa0975450:intron 35.0%
AATATAGAGGTGGAAGGAAA+TGG - chr6_4:9230507-9230526 Msa0975450:intron 35.0%
! TTTCAACTTGCTTTATTGGG+TGG - chr6_4:9230598-9230617 Msa0975450:intron 35.0%
CATTGTTGCTAGAAGATTAG+AGG + chr6_4:9230919-9230938 None:intergenic 35.0%
!!! GAAAAGTTTTTAGTAGAGGG+TGG + chr6_4:9230958-9230977 None:intergenic 35.0%
TCCACAGATCCAAGAAATAT+TGG - chr6_4:9231146-9231165 Msa0975450:intron 35.0%
GTGTTTGAATGTTGAGCAAA+GGG + chr6_4:9231198-9231217 None:intergenic 35.0%
TGTGTTTGAATGTTGAGCAA+AGG + chr6_4:9231199-9231218 None:intergenic 35.0%
GCAAAACTTCTTCACATTAG+AGG - chr6_4:9231303-9231322 Msa0975450:intron 35.0%
AAAATCAGTGAGACCATCTA+AGG + chr6_4:9231397-9231416 None:intergenic 35.0%
!! AACTTTGAAACAATCCCAGA+TGG - chr6_4:9231417-9231436 Msa0975450:intron 35.0%
AAACTATGCAAGTAACTGGA+GGG + chr6_4:9231578-9231597 None:intergenic 35.0%
TCAGAAACTATGCAAGTAAC+TGG + chr6_4:9231582-9231601 None:intergenic 35.0%
CTGGACTAAAGAAAACAACT+GGG + chr6_4:9231650-9231669 None:intergenic 35.0%
! AAAAATGTACATGCATTGGC+TGG + chr6_4:9231669-9231688 None:intergenic 35.0%
AAAGGTCTCATACCACTAAA+AGG - chr6_4:9231720-9231739 Msa0975450:intron 35.0%
! AGAATGTTTTACACCAGCTG+TGG - chr6_4:9229000-9229019 Msa0975450:intron 40.0%
! AGAATGTTTTACACCAGCTG+TGG - chr6_4:9229000-9229019 Msa0975450:intron 40.0%
ATGCTTAACTACAGAACTGC+TGG - chr6_4:9229346-9229365 Msa0975450:intron 40.0%
TGCTTAACTACAGAACTGCT+GGG - chr6_4:9229347-9229366 Msa0975450:intron 40.0%
CAAACTCGATGATCCACATT+GGG + chr6_4:9229481-9229500 None:intergenic 40.0%
TCAAACTCGATGATCCACAT+TGG + chr6_4:9229482-9229501 None:intergenic 40.0%
CAACACACAGAGTCCAAAAA+AGG + chr6_4:9229847-9229866 None:intergenic 40.0%
TGTACTACTCCAAACCATAG+TGG + chr6_4:9230337-9230356 None:intergenic 40.0%
GGAAACAAATGAGATGTCAC+CGG - chr6_4:9230463-9230482 Msa0975450:intron 40.0%
AGATGTCACCGGAGAATATA+AGG - chr6_4:9230474-9230493 Msa0975450:intron 40.0%
! TAGCTGTGCCATTCTACAAT+AGG - chr6_4:9230780-9230799 Msa0975450:intron 40.0%
! AGCTGTGCCATTCTACAATA+GGG - chr6_4:9230781-9230800 Msa0975450:intron 40.0%
GCCAATATTTCTTGGATCTG+TGG + chr6_4:9231150-9231169 None:intergenic 40.0%
TTAATCCCATGTCCAGTTCA+AGG - chr6_4:9231255-9231274 Msa0975450:intron 40.0%
AAAGGTCCAAAAGCCTTAGA+TGG - chr6_4:9231381-9231400 Msa0975450:intron 40.0%
! CATCACCTTCTATTGGTGTT+AGG + chr6_4:9231443-9231462 None:intergenic 40.0%
CTAACACCAATAGAAGGTGA+TGG - chr6_4:9231441-9231460 Msa0975450:intron 40.0%
TAAGTCTAGCAAGAAGATCG+CGG + chr6_4:9231530-9231549 None:intergenic 40.0%
CTTAATGACTCTGCAACATC+TGG - chr6_4:9231546-9231565 Msa0975450:intron 40.0%
GAAACTATGCAAGTAACTGG+AGG + chr6_4:9231579-9231598 None:intergenic 40.0%
AAGTTCTTCAGCAGCTTGTA+TGG + chr6_4:9231622-9231641 None:intergenic 40.0%
GCTGGACTAAAGAAAACAAC+TGG + chr6_4:9231651-9231670 None:intergenic 40.0%
CCTAATCTCTCCGTACATCT+TGG + chr6_4:9228606-9228625 None:intergenic 45.0%
CCAAGATGTACGGAGAGATT+AGG - chr6_4:9228603-9228622 Msa0975450:intron 45.0%
GGTGCAACTTCACTATCACA+AGG + chr6_4:9228712-9228731 None:intergenic 45.0%
CGCTGTGATCTGTGAGAATT+TGG - chr6_4:9228844-9228863 Msa0975450:intron 45.0%
! ATGTTTTACACCAGCTGTGG+AGG - chr6_4:9229003-9229022 Msa0975450:intron 45.0%
! ATGTTTTACACCAGCTGTGG+AGG - chr6_4:9229003-9229022 Msa0975450:intron 45.0%
TGATCCACATTGGGATAAGG+TGG + chr6_4:9229472-9229491 None:intergenic 45.0%
CGATGATCCACATTGGGATA+AGG + chr6_4:9229475-9229494 None:intergenic 45.0%
TGAGATACTCATATCCCCAG+TGG - chr6_4:9229510-9229529 Msa0975450:intron 45.0%
AATCAATACCACTCCGCAGA+GGG + chr6_4:9229547-9229566 None:intergenic 45.0%
AATGAAGAGGTCAGCCACTA+TGG - chr6_4:9230287-9230306 Msa0975450:intron 45.0%
TTGAAGGGTCCAAACCATAG+TGG + chr6_4:9230304-9230323 None:intergenic 45.0%
AGAGGTGGAAGGAAATGGAA+AGG - chr6_4:9230512-9230531 Msa0975450:intron 45.0%
GAGGTGGAAGGAAATGGAAA+GGG - chr6_4:9230513-9230532 Msa0975450:intron 45.0%
TTATTGGGTGGCGCATCTAT+AGG - chr6_4:9230610-9230629 Msa0975450:intron 45.0%
GTAGAATGGCACAGCTACAA+GGG + chr6_4:9230777-9230796 None:intergenic 45.0%
TGTAGAATGGCACAGCTACA+AGG + chr6_4:9230778-9230797 None:intergenic 45.0%
CATGGGATTAACACAGCATG+AGG + chr6_4:9231246-9231265 None:intergenic 45.0%
! TATGGCCTTGAACTGGACAT+GGG + chr6_4:9231263-9231282 None:intergenic 45.0%
! ATATGGCCTTGAACTGGACA+TGG + chr6_4:9231264-9231283 None:intergenic 45.0%
! GGATTGATATGGCCTTGAAC+TGG + chr6_4:9231270-9231289 None:intergenic 45.0%
!! GTGAGACCATCTAAGGCTTT+TGG + chr6_4:9231390-9231409 None:intergenic 45.0%
!! CTATTGGTGTTAGGCCATCT+GGG + chr6_4:9231434-9231453 None:intergenic 45.0%
!! TCTATTGGTGTTAGGCCATC+TGG + chr6_4:9231435-9231454 None:intergenic 45.0%
GATGGCCTAACACCAATAGA+AGG - chr6_4:9231435-9231454 Msa0975450:intron 45.0%
ACATCGCCATCACCTTCTAT+TGG + chr6_4:9231450-9231469 None:intergenic 45.0%
!!! AATAATATTTTTTTTGTATT+CGG + chr6_4:9230067-9230086 None:intergenic 5.0%
CAGCGCCCACTACAAATGAT+AGG + chr6_4:9228829-9228848 None:intergenic 50.0%
! AAGGCGCATGAAGCACTTGA+CGG + chr6_4:9229037-9229056 None:intergenic 50.0%
TTACACCAGCTGTGGAGGAA+CGG - chr6_4:9229008-9229027 Msa0975450:intron 50.0%
! ATTGGTACTTACGAAGGCGC+AGG + chr6_4:9229050-9229069 None:intergenic 50.0%
GGAACCACCTTATCCCAATG+TGG - chr6_4:9229465-9229484 Msa0975450:intron 50.0%
GAATCAATACCACTCCGCAG+AGG + chr6_4:9229548-9229567 None:intergenic 50.0%
AGAGGTCAGCCACTATGGTT+TGG - chr6_4:9230292-9230311 Msa0975450:intron 50.0%
AGTAGAGGGTGGCCCAATTA+AGG + chr6_4:9230947-9230966 None:intergenic 50.0%
GTTGAGCAAAGGGAAGCCAA+TGG + chr6_4:9231188-9231207 None:intergenic 50.0%
GAAGATCGCGGAAAGGTTGT+AGG + chr6_4:9231518-9231537 None:intergenic 50.0%
CTAGCAAGAAGATCGCGGAA+AGG + chr6_4:9231525-9231544 None:intergenic 50.0%
GGATACTGTTCCTCCACAGC+TGG + chr6_4:9229016-9229035 None:intergenic 55.0%
AGCTGTGGAGGAACGGTATC+CGG - chr6_4:9229119-9229138 Msa0975450:intron 55.0%
GGATACCGTTCCTCCACAGC+TGG + chr6_4:9229120-9229139 None:intergenic 60.0%
!! AAGGCGCAGGAAGCACTTGC+CGG + chr6_4:9229141-9229160 None:intergenic 60.0%
TACCACTCCGCAGAGGGTTG+TGG + chr6_4:9229541-9229560 None:intergenic 60.0%
AGGGTTGTGGCAGCGCCACT+GGG + chr6_4:9229528-9229547 None:intergenic 65.0%
TGCCACAACCCTCTGCGGAG+TGG - chr6_4:9229536-9229555 Msa0975450:intron 65.0%
GGGTTGTGGCAGCGCCACTG+GGG + chr6_4:9229527-9229546 None:intergenic 70.0%
GAGGGTTGTGGCAGCGCCAC+TGG + chr6_4:9229529-9229548 None:intergenic 70.0%
GGCGCTGCCACAACCCTCTG+CGG - chr6_4:9229531-9229550 Msa0975450:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 9227682 9231752 9227682 ID=Msa0975450;Name=Msa0975450
chr6_4 mRNA 9227682 9231752 9227682 ID=Msa0975450-mRNA-1;Parent=Msa0975450;Name=Msa0975450-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0|0|0.25|1|1|4|0|220
chr6_4 exon 9231747 9231752 9231747 ID=Msa0975450-mRNA-1:exon:3306;Parent=Msa0975450-mRNA-1
chr6_4 exon 9230903 9230952 9230903 ID=Msa0975450-mRNA-1:exon:3305;Parent=Msa0975450-mRNA-1
chr6_4 exon 9229326 9229332 9229326 ID=Msa0975450-mRNA-1:exon:3304;Parent=Msa0975450-mRNA-1
chr6_4 exon 9227682 9228281 9227682 ID=Msa0975450-mRNA-1:exon:3303;Parent=Msa0975450-mRNA-1
chr6_4 CDS 9231747 9231752 9231747 ID=Msa0975450-mRNA-1:cds;Parent=Msa0975450-mRNA-1
chr6_4 CDS 9230903 9230952 9230903 ID=Msa0975450-mRNA-1:cds;Parent=Msa0975450-mRNA-1
chr6_4 CDS 9229326 9229332 9229326 ID=Msa0975450-mRNA-1:cds;Parent=Msa0975450-mRNA-1
chr6_4 CDS 9227682 9228281 9227682 ID=Msa0975450-mRNA-1:cds;Parent=Msa0975450-mRNA-1
Gene Sequence

>Msa0975450

ATGCAGGTTCTATTCTCTATTTATGAGGTCAATTCAACTTCTAAACTCAGTACAACTGTTAAAATCCAAGAAATATTGGCTTTATCTCTATTAAACCATTGGCTTCCCTTTGCTCAACATTCAAACACAAACTCAGAAATGAGTGATTCAAAACCTCATGCTGTGTTAATCCCATGTCCAGTTCAAGGCCATATCAATCCATTGTTGAAACTAGCAAAACTTCTTCACATTAGAGGATTTCATATAAACTTTGTCAACACTGAATACAATCACAAACGTTTGCTCAAATCAAAAGGTCCAAAAGCCTTAGATGGTCTCACTGATTTTAACTTTGAAACAATCCCAGATGGCCTAACACCAATAGAAGGTGATGGCGATGTTAGTCGAGACATTAACGCTCTTTGTAAATCAATCAGAAAGAACTTCCTACAACCTTTCCGCGATCTTCTTGCTAGACTTAATGACTCTGCAACATCTGGTCTTGTCCCTCCAGTTACTTGCATAGTTTCTGATATTAGCATGTCTTTTACCATACAAGCTGCTGAAGAACTTTCAATCCCAGTTGTTTTCTTTAGTCCAGCCAATGCATGTACATTTTTGACTTTTATTCATTTTAGTACATTGTTGGATAAAGGTCTCATACCACTAAAAGGTAACGATTAA

Protein sequence

>Msa0975450

MQVLFSIYEVNSTSKLSTTVKIQEILALSLLNHWLPFAQHSNTNSEMSDSKPHAVLIPCPVQGHINPLLKLAKLLHIRGFHINFVNTEYNHKRLLKSKGPKALDGLTDFNFETIPDGLTPIEGDGDVSRDINALCKSIRKNFLQPFRDLLARLNDSATSGLVPPVTCIVSDISMSFTIQAAEELSIPVVFFSPANACTFLTFIHFSTLLDKGLIPLKGND*