AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0120180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120180 MtrunA17_Chr1g0178361 98.689 305 4 0 1 305 1 305 0.0 617
Msa0120180 MtrunA17_Chr4g0017941 69.231 247 74 1 59 305 68 312 1.18e-124 358
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120180 AT5G06130.2 68.647 303 76 3 6 305 29 315 9.09e-144 407
Msa0120180 AT5G06130.1 77.155 232 52 1 74 305 1 231 1.40e-129 368
Msa0120180 AT5G61670.2 69.880 249 73 1 57 305 61 307 5.71e-125 359
Msa0120180 AT5G61670.1 69.880 249 73 1 57 305 61 307 5.71e-125 359

Find 76 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATAAAATCTTTCTTCTTA+TGG 0.155230 1_3:+44814841 Msa0120180:CDS
ATATCTGCAATAATTGTATT+TGG 0.197063 1_3:+44815759 Msa0120180:CDS
ATGGCAGCTGGAGCTGAAAT+TGG 0.211679 1_3:+44816728 Msa0120180:intron
GGAATAGATGATGGAATTTC+CGG 0.218058 1_3:-44815367 None:intergenic
TTTGAACATTAATCCGATTT+CGG 0.296746 1_3:+44817224 Msa0120180:CDS
TTTCCAGCACCAGAGCAATT+TGG 0.301546 1_3:-44817297 None:intergenic
TTTAAAAGGGGCAAAGAAAA+TGG 0.310012 1_3:-44814539 None:intergenic
AATTATATTCAGTGTCAATA+TGG 0.322985 1_3:-44817669 None:intergenic
TGCATTTGCCTTTGCAACTA+AGG 0.340206 1_3:+44816790 Msa0120180:CDS
CCCGAAAAGGATGCGACAAT+TGG 0.359416 1_3:-44816953 None:intergenic
AGAGAAAGTATTCATTGGTT+TGG 0.367720 1_3:-44814473 None:intergenic
TAACTTCGGTGTGATTTCAT+TGG 0.379581 1_3:-44814632 None:intergenic
TGTCCAACCTGCCTTTGCAC+TGG 0.394247 1_3:+44817426 Msa0120180:CDS
ATTAATCCGATTTCGGCATC+TGG 0.402233 1_3:+44817231 Msa0120180:CDS
GAAGGAGAGAAAGTATTCAT+TGG 0.405939 1_3:-44814478 None:intergenic
TTGAAGAAGCTCTATCTAAC+AGG 0.406814 1_3:+44815726 Msa0120180:CDS
CTATTGTCTGTTCTGTTGTT+CGG 0.410489 1_3:+44814383 Msa0120180:five_prime_UTR
ACAAAATCCTGAACCGTCTC+TGG 0.410773 1_3:-44814773 None:intergenic
TGAAGGGCCAGAGACGGTTC+AGG 0.422644 1_3:+44814766 Msa0120180:CDS
TTTGGACACCTTGTCGTTGT+AGG 0.425866 1_3:-44817279 None:intergenic
CTCACCACATGAGGAAGAAA+AGG 0.428649 1_3:-44815388 None:intergenic
ATGGAACTAGGACAGAATTC+TGG 0.437091 1_3:-44817650 None:intergenic
GAAGTACCAGATGCCGAAAT+CGG 0.441052 1_3:-44817237 None:intergenic
TTCAGTACTGATGTTAATTG+AGG 0.445259 1_3:+44816994 Msa0120180:CDS
TGTCCAAATTGCTCTGGTGC+TGG 0.448257 1_3:+44817294 Msa0120180:CDS
TAGAGCTTCTTCAAAGTGTT+GGG 0.450361 1_3:-44815717 None:intergenic
CTGGAGCTGAAATTGGGTAT+AGG 0.452466 1_3:+44816735 Msa0120180:CDS
AGTCAAATGGATCAATTCTC+AGG 0.456133 1_3:-44817473 None:intergenic
AATCTTTCTTCTTATGGAAG+AGG 0.457917 1_3:+44814847 Msa0120180:CDS
TGCTCTTCTCCACAGGATGC+AGG 0.457995 1_3:+44814607 Msa0120180:CDS
TGCAAGTATTGCCTTGGAAC+TGG 0.458275 1_3:+44817049 Msa0120180:CDS
TACTTCTGTTAGACCCCTGC+AGG 0.461988 1_3:+44817254 Msa0120180:CDS
CATGTAAAGAATTAGTCAAA+TGG 0.467029 1_3:-44817486 None:intergenic
ATAGAGCTTCTTCAAAGTGT+TGG 0.477201 1_3:-44815718 None:intergenic
CTGCAATAATTGTATTTGGC+GGG 0.477772 1_3:+44815763 Msa0120180:CDS
CAGGTTACTTGGCTTGCGCT+CGG 0.481171 1_3:+44817181 Msa0120180:intron
GTCCAACCTGCCTTTGCACT+GGG 0.482552 1_3:+44817427 Msa0120180:CDS
CCGAAAAGGATGCGACAATT+GGG 0.484141 1_3:-44816952 None:intergenic
GCCAACTGCTCCACCCGAAA+AGG 0.487934 1_3:-44816966 None:intergenic
TGGCAGCTGGAGCTGAAATT+GGG 0.494726 1_3:+44816729 Msa0120180:intron
TATAGGTGGCACGTCATATG+AGG 0.498079 1_3:+44816752 Msa0120180:CDS
GGAAGAAAAGGAATAGATGA+TGG 0.501221 1_3:-44815376 None:intergenic
TAGCTATGAAAGGTGGAAAG+TGG 0.506702 1_3:-44814416 None:intergenic
TTGTCGTTGTAGGAACCTGC+AGG 0.508146 1_3:-44817269 None:intergenic
AGCTATGAAAGGTGGAAAGT+GGG 0.516086 1_3:-44814415 None:intergenic
ACAAGGTGCAAGTATTGCCT+TGG 0.523158 1_3:+44817043 Msa0120180:CDS
TAAGGTAGAATTGTGGAGGA+AGG 0.527472 1_3:-44814496 None:intergenic
TGCGCTCGGTGTTCCACAAG+TGG 0.528281 1_3:+44817195 Msa0120180:CDS
AATTGCGTGCTCTTCTCCAC+AGG 0.533626 1_3:+44814600 Msa0120180:CDS
ACAAGGTGTCCAAATTGCTC+TGG 0.537901 1_3:+44817288 Msa0120180:CDS
GTTCAAACATACACCACTTG+TGG 0.537962 1_3:-44817208 None:intergenic
AGAACAGACAATAGCAGCTA+AGG 0.549190 1_3:-44814374 None:intergenic
CTTCATCCCAGTGCAAAGGC+AGG 0.549940 1_3:-44817433 None:intergenic
TGGCGGGCTTATTGCACCAA+CGG 0.550362 1_3:+44815779 Msa0120180:CDS
AAATTGCTCTGGTGCTGGAA+AGG 0.553692 1_3:+44817299 Msa0120180:CDS
GGAAGATGCAAATGAGATGC+CGG 0.556353 1_3:+44815348 Msa0120180:CDS
TCTGCAATAATTGTATTTGG+CGG 0.560108 1_3:+44815762 Msa0120180:CDS
CATCATTGAAGGGCCAGAGA+CGG 0.562395 1_3:+44814760 Msa0120180:CDS
GGAGATTGCGTGTGCAGCAG+CGG 0.563072 1_3:+44815287 Msa0120180:CDS
ATAGCATACCTTAGTTGCAA+AGG 0.566228 1_3:-44816798 None:intergenic
ATCCCAGTGCAAAGGCAGGT+TGG 0.571963 1_3:-44817429 None:intergenic
TGTCGTTGTAGGAACCTGCA+GGG 0.577519 1_3:-44817268 None:intergenic
AACTAGGACAGAATTCTGGC+AGG 0.584086 1_3:-44817646 None:intergenic
TTCAGTGTCAATATGGAACT+AGG 0.585120 1_3:-44817662 None:intergenic
AGGGTAAGGTAGAATTGTGG+AGG 0.586801 1_3:-44814500 None:intergenic
TGAAGGGTAAGGTAGAATTG+TGG 0.598098 1_3:-44814503 None:intergenic
GAGCTGAAATTGGGTATAGG+TGG 0.607211 1_3:+44816738 Msa0120180:CDS
CCTTTGCACTGGGATGAAGA+TGG 0.608589 1_3:+44817437 Msa0120180:CDS
TCATTGGAGCCTGCATCCTG+TGG 0.609087 1_3:-44814616 None:intergenic
CCATCTTCATCCCAGTGCAA+AGG 0.623251 1_3:-44817437 None:intergenic
TTGGAAGTAGCTATGAAAGG+TGG 0.623849 1_3:-44814423 None:intergenic
TTGAGCAACAAGAGAAAACA+AGG 0.624269 1_3:+44817026 Msa0120180:CDS
GTAGAAACATACCAGTTCCA+AGG 0.632023 1_3:-44817060 None:intergenic
TCATTGGAAGTAGCTATGAA+AGG 0.637862 1_3:-44814426 None:intergenic
GTCGTTGTAGGAACCTGCAG+GGG 0.684640 1_3:-44817267 None:intergenic
TGCAGGTTCCTACAACGACA+AGG 0.684689 1_3:+44817271 Msa0120180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAAAAATATACTTTTTTA+TGG - chr1_3:44814324-44814343 None:intergenic 10.0%
!!! TTTTTAATAACTTATGAAAA+CGG - chr1_3:44815139-44815158 None:intergenic 10.0%
!!! TAAATTAATACTAAATTTTG+AGG - chr1_3:44817568-44817587 None:intergenic 10.0%
!! AAACAAAATAAAAATGAATA+AGG + chr1_3:44817593-44817612 Msa0120180:three_prime_UTR 10.0%
!! CAAAAAAAAAAAACTAACTT+CGG - chr1_3:44814649-44814668 None:intergenic 15.0%
!!! AGTTTTTTTTTTTTGCTTAT+TGG + chr1_3:44814654-44814673 Msa0120180:intron 15.0%
!!! GTTTTTTTTTTTTGCTTATT+GGG + chr1_3:44814655-44814674 Msa0120180:intron 15.0%
!!! CTTTTATATAAAATCCAAAA+AGG - chr1_3:44816123-44816142 None:intergenic 15.0%
!!! CTTTTTGGATTTTATATAAA+AGG + chr1_3:44816121-44816140 Msa0120180:intron 15.0%
!!! AATTCTGACAATTTAAATTT+TGG + chr1_3:44816245-44816264 Msa0120180:intron 15.0%
!!! ATTCTGACAATTTAAATTTT+GGG + chr1_3:44816246-44816265 Msa0120180:intron 15.0%
!!! ATATTGAATCGTTATTTTAA+TGG + chr1_3:44816709-44816728 Msa0120180:intron 15.0%
!! ATAAAAATGAATAAGGAATT+AGG + chr1_3:44817600-44817619 Msa0120180:three_prime_UTR 15.0%
!! TTGACTTAGAAAAAGAAAAT+TGG - chr1_3:44814576-44814595 None:intergenic 20.0%
!!! AATTTTCTTTTTCTAAGTCA+AGG + chr1_3:44814575-44814594 Msa0120180:CDS 20.0%
!! CAATAAAATCTTTCTTCTTA+TGG + chr1_3:44814841-44814860 Msa0120180:CDS 20.0%
!!! GTCAATTTTCATTCATATTA+TGG + chr1_3:44814903-44814922 Msa0120180:intron 20.0%
!! TAGTTTAAATAAGACACTTA+AGG + chr1_3:44815512-44815531 Msa0120180:intron 20.0%
!! ATATCTGCAATAATTGTATT+TGG + chr1_3:44815759-44815778 Msa0120180:CDS 20.0%
!! AAAAAACAATAAATTACCGT+TGG - chr1_3:44815798-44815817 None:intergenic 20.0%
!! TATTTGGCATAGAATAAAAA+AGG - chr1_3:44815821-44815840 None:intergenic 20.0%
!!! TGTAATTTAGGTTGATTATT+TGG - chr1_3:44815837-44815856 None:intergenic 20.0%
!!! TTCTGACAATTTAAATTTTG+GGG + chr1_3:44816247-44816266 Msa0120180:intron 20.0%
!! TAACGATTCAATATTTGAAA+TGG - chr1_3:44816703-44816722 None:intergenic 20.0%
!! ATTTCTTTCTTTCTGATAAA+TGG - chr1_3:44816854-44816873 None:intergenic 20.0%
!!! AAATTTGTAATTTTATGGAC+AGG + chr1_3:44817162-44817181 Msa0120180:intron 20.0%
!! AATTAAACAGTTGCATATAT+CGG - chr1_3:44817344-44817363 None:intergenic 20.0%
!!! ATTAATACTAAATTTTGAGG+TGG - chr1_3:44817565-44817584 None:intergenic 20.0%
!! AATTATATTCAGTGTCAATA+TGG - chr1_3:44817672-44817691 None:intergenic 20.0%
! CTTAGAAAAAGAAAATTGGT+TGG - chr1_3:44814572-44814591 None:intergenic 25.0%
! CAAAATTTAAACTTTGCAAC+TGG + chr1_3:44814694-44814713 Msa0120180:intron 25.0%
! TGACACTATTTAATGAAGTA+TGG - chr1_3:44814887-44814906 None:intergenic 25.0%
!! GTTTTCATGTAACTTATAAG+CGG + chr1_3:44815038-44815057 Msa0120180:intron 25.0%
!!! AACTTGCTATAAGATATAAG+CGG - chr1_3:44815218-44815237 None:intergenic 25.0%
! CCAATAGTTTAATCAAAACA+AGG - chr1_3:44815422-44815441 None:intergenic 25.0%
!!! CCTTGTTTTGATTAAACTAT+TGG + chr1_3:44815419-44815438 Msa0120180:intron 25.0%
!! CATAAAAGTATGAGTTAACA+TGG - chr1_3:44816015-44816034 None:intergenic 25.0%
!! CATGTTAACTCATACTTTTA+TGG + chr1_3:44816013-44816032 Msa0120180:intron 25.0%
! AATCAGTAGCAAACTATAAT+AGG - chr1_3:44816048-44816067 None:intergenic 25.0%
! ACTTTCAAATTAACTTCAGT+GGG - chr1_3:44816089-44816108 None:intergenic 25.0%
!! TCTTCTCATTTAAGATGAAA+AGG - chr1_3:44816195-44816214 None:intergenic 25.0%
! TTCATCTTAAATGAGAAGAA+TGG + chr1_3:44816196-44816215 Msa0120180:intron 25.0%
! TAAATGAGAAGAATGGATAA+AGG + chr1_3:44816203-44816222 Msa0120180:intron 25.0%
! ATATGTGCTAACTTGAATTT+AGG + chr1_3:44816292-44816311 Msa0120180:intron 25.0%
! GTTATAGCAAATAGCATAAA+GGG - chr1_3:44816369-44816388 None:intergenic 25.0%
! AGTTATAGCAAATAGCATAA+AGG - chr1_3:44816370-44816389 None:intergenic 25.0%
! ACTAGTAGTACATAAAGTAT+AGG + chr1_3:44816387-44816406 Msa0120180:intron 25.0%
!! CAATTCTAGAAAGAATAGAA+AGG - chr1_3:44817131-44817150 None:intergenic 25.0%
! TTTGAACATTAATCCGATTT+CGG + chr1_3:44817224-44817243 Msa0120180:CDS 25.0%
!!! GTCATATGTGTTTTTTGTTT+AGG + chr1_3:44817398-44817417 Msa0120180:intron 25.0%
! CATGTAAAGAATTAGTCAAA+TGG - chr1_3:44817489-44817508 None:intergenic 25.0%
! TTTTGAGCTCATAGAATCAT+TGG - chr1_3:44814445-44814464 None:intergenic 30.0%
!! AGAGAAAGTATTCATTGGTT+TGG - chr1_3:44814476-44814495 None:intergenic 30.0%
TTTAAAAGGGGCAAAGAAAA+TGG - chr1_3:44814542-44814561 None:intergenic 30.0%
! ATTTTCTTTGCCCCTTTTAA+AGG + chr1_3:44814541-44814560 Msa0120180:CDS 30.0%
!!! GTTGGTTTTACCTTTAAAAG+GGG - chr1_3:44814554-44814573 None:intergenic 30.0%
!!! GGTTGGTTTTACCTTTAAAA+GGG - chr1_3:44814555-44814574 None:intergenic 30.0%
!!! TGGTTGGTTTTACCTTTAAA+AGG - chr1_3:44814556-44814575 None:intergenic 30.0%
AATCTTTCTTCTTATGGAAG+AGG + chr1_3:44814847-44814866 Msa0120180:CDS 30.0%
!! CTTATTTTCATAAGTACTCC+AGG - chr1_3:44815078-44815097 None:intergenic 30.0%
TGACTAATGAGAAATGAGTA+TGG + chr1_3:44815257-44815276 Msa0120180:intron 30.0%
AGTACTTGAAGATATTGGTA+TGG - chr1_3:44815464-44815483 None:intergenic 30.0%
TCTTCAGTACTTGAAGATAT+TGG - chr1_3:44815469-44815488 None:intergenic 30.0%
TTCGATAGATGAGAAACAAA+AGG - chr1_3:44815619-44815638 None:intergenic 30.0%
TCTGCAATAATTGTATTTGG+CGG + chr1_3:44815762-44815781 Msa0120180:CDS 30.0%
ATTGTCTCTATTTGTCTCAT+AGG + chr1_3:44815882-44815901 Msa0120180:intron 30.0%
TCCTTTGTTACTCTCTATAA+CGG + chr1_3:44815914-44815933 Msa0120180:intron 30.0%
CGCTATGTTAAGTTTAAATC+TGG + chr1_3:44815939-44815958 Msa0120180:intron 30.0%
! TTTAAATCTGGCTTAGATTC+TGG + chr1_3:44815951-44815970 Msa0120180:intron 30.0%
CTTTCAAATTAACTTCAGTG+GGG - chr1_3:44816088-44816107 None:intergenic 30.0%
CACTTTCAAATTAACTTCAG+TGG - chr1_3:44816090-44816109 None:intergenic 30.0%
!!! AGTGTTGATTTCTACCTTTT+TGG + chr1_3:44816106-44816125 Msa0120180:intron 30.0%
TTTATCATTTGCTCTTAGAC+AGG - chr1_3:44816324-44816343 None:intergenic 30.0%
!! ACACTAAAAGAGTATTAAGG+AGG - chr1_3:44816454-44816473 None:intergenic 30.0%
GATAAGTAGAGAAATCTCAA+GGG + chr1_3:44816544-44816563 Msa0120180:intron 30.0%
AAAGGTAAATGTGAGTGAAT+TGG - chr1_3:44816596-44816615 None:intergenic 30.0%
! ACTCACATTTACCTTTTAAG+TGG + chr1_3:44816600-44816619 Msa0120180:intron 30.0%
! CTTTTATGAGACCACTTAAA+AGG - chr1_3:44816614-44816633 None:intergenic 30.0%
!! TTCAGTACTGATGTTAATTG+AGG + chr1_3:44816994-44817013 Msa0120180:CDS 30.0%
! AATTTTATGGACAGGTTACT+TGG + chr1_3:44817170-44817189 Msa0120180:intron 30.0%
CTATTGTCTGTTCTGTTGTT+CGG + chr1_3:44814383-44814402 Msa0120180:five_prime_UTR 35.0%
TCATTGGAAGTAGCTATGAA+AGG - chr1_3:44814429-44814448 None:intergenic 35.0%
!! GAAGGAGAGAAAGTATTCAT+TGG - chr1_3:44814481-44814500 None:intergenic 35.0%
!! TTTTTGGAAAGTGAAGGGTA+AGG - chr1_3:44814517-44814536 None:intergenic 35.0%
!! TGGAGTTTTTGGAAAGTGAA+GGG - chr1_3:44814522-44814541 None:intergenic 35.0%
!! ATGGAGTTTTTGGAAAGTGA+AGG - chr1_3:44814523-44814542 None:intergenic 35.0%
! GGCAAAGAAAATGGAGTTTT+TGG - chr1_3:44814533-44814552 None:intergenic 35.0%
! TAACTTCGGTGTGATTTCAT+TGG - chr1_3:44814635-44814654 None:intergenic 35.0%
! AGCAACTTTTGCATCATTGA+AGG + chr1_3:44814749-44814768 Msa0120180:intron 35.0%
! GCAACTTTTGCATCATTGAA+GGG + chr1_3:44814750-44814769 Msa0120180:intron 35.0%
! TAAGATATAAGCGGCTTGTT+TGG - chr1_3:44815209-44815228 None:intergenic 35.0%
TAATGAGAAATGAGTATGGC+AGG + chr1_3:44815261-44815280 Msa0120180:intron 35.0%
! ACAAAGAGCTTTTAGTGAAG+AGG + chr1_3:44815321-44815340 Msa0120180:CDS 35.0%
! CAAAGAGCTTTTAGTGAAGA+GGG + chr1_3:44815322-44815341 Msa0120180:CDS 35.0%
!! GGAATAGATGATGGAATTTC+CGG - chr1_3:44815370-44815389 None:intergenic 35.0%
GGAAGAAAAGGAATAGATGA+TGG - chr1_3:44815379-44815398 None:intergenic 35.0%
! TATTCCTTTTCTTCCTCATG+TGG + chr1_3:44815384-44815403 Msa0120180:CDS 35.0%
!!! GTTTTAAAACTCACCACATG+AGG - chr1_3:44815400-44815419 None:intergenic 35.0%
!! GTATTCGAAATGAGAGCATT+TGG + chr1_3:44815647-44815666 Msa0120180:intron 35.0%
! TCAACTAATTCCGTGCTTTT+CGG + chr1_3:44815681-44815700 Msa0120180:intron 35.0%
! TAGAGCTTCTTCAAAGTGTT+GGG - chr1_3:44815720-44815739 None:intergenic 35.0%
ATAGAGCTTCTTCAAAGTGT+TGG - chr1_3:44815721-44815740 None:intergenic 35.0%
TTGAAGAAGCTCTATCTAAC+AGG + chr1_3:44815726-44815745 Msa0120180:CDS 35.0%
CTGCAATAATTGTATTTGGC+GGG + chr1_3:44815763-44815782 Msa0120180:CDS 35.0%
GATAGACACTCGTGTAATTT+AGG - chr1_3:44815849-44815868 None:intergenic 35.0%
TCCGTTATAGAGAGTAACAA+AGG - chr1_3:44815918-44815937 None:intergenic 35.0%
CAGTAGCAAACTATAATAGG+AGG - chr1_3:44816045-44816064 None:intergenic 35.0%
TTTGTAAAACATTGAGCCGT+AGG + chr1_3:44816413-44816432 Msa0120180:intron 35.0%
!! GGGACACTAAAAGAGTATTA+AGG - chr1_3:44816457-44816476 None:intergenic 35.0%
TTTCATAAATCAGACCCCAA+AGG - chr1_3:44816501-44816520 None:intergenic 35.0%
ATTTATGAAACTGCGACTCT+AGG + chr1_3:44816511-44816530 Msa0120180:intron 35.0%
CGATAAGTAGAGAAATCTCA+AGG + chr1_3:44816543-44816562 Msa0120180:intron 35.0%
!!! ATCGTTATTTTAATGGCAGC+TGG + chr1_3:44816716-44816735 Msa0120180:intron 35.0%
ATAGCATACCTTAGTTGCAA+AGG - chr1_3:44816801-44816820 None:intergenic 35.0%
! ATGCCTGATCACAATTTGTT+TGG + chr1_3:44816907-44816926 Msa0120180:intron 35.0%
GAACCAAACAAATTGTGATC+AGG - chr1_3:44816913-44816932 None:intergenic 35.0%
TTGAGCAACAAGAGAAAACA+AGG + chr1_3:44817026-44817045 Msa0120180:CDS 35.0%
TTTCTACACTGAAGTTGAAC+TGG + chr1_3:44817076-44817095 Msa0120180:intron 35.0%
GCATATATCGGCAAGAATTA+AGG - chr1_3:44817332-44817351 None:intergenic 35.0%
AGTCAAATGGATCAATTCTC+AGG - chr1_3:44817476-44817495 None:intergenic 35.0%
TTCAGTGTCAATATGGAACT+AGG - chr1_3:44817665-44817684 None:intergenic 35.0%
AGAACAGACAATAGCAGCTA+AGG - chr1_3:44814377-44814396 None:intergenic 40.0%
AGCTATGAAAGGTGGAAAGT+GGG - chr1_3:44814418-44814437 None:intergenic 40.0%
TAGCTATGAAAGGTGGAAAG+TGG - chr1_3:44814419-44814438 None:intergenic 40.0%
TTGGAAGTAGCTATGAAAGG+TGG - chr1_3:44814426-44814445 None:intergenic 40.0%
TAAGGTAGAATTGTGGAGGA+AGG - chr1_3:44814499-44814518 None:intergenic 40.0%
TGAAGGGTAAGGTAGAATTG+TGG - chr1_3:44814506-44814525 None:intergenic 40.0%
! TCAGGATTTTGTTCAGATGC+AGG + chr1_3:44814784-44814803 Msa0120180:CDS 40.0%
AGAAATGAGTATGGCAGGTT+AGG + chr1_3:44815266-44815285 Msa0120180:intron 40.0%
CTACTTCAATCCGAAAAGCA+CGG - chr1_3:44815694-44815713 None:intergenic 40.0%
!! GGGGTGCAAGTTTTAGTATA+AGG + chr1_3:44816266-44816285 Msa0120180:intron 40.0%
AAGGTGTACCCCATTGTTAT+GGG - chr1_3:44816482-44816501 None:intergenic 40.0%
! AAAGGTGTACCCCATTGTTA+TGG - chr1_3:44816483-44816502 None:intergenic 40.0%
ATAACAATGGGGTACACCTT+TGG + chr1_3:44816482-44816501 Msa0120180:intron 40.0%
TAACAATGGGGTACACCTTT+GGG + chr1_3:44816483-44816502 Msa0120180:intron 40.0%
TGCATTTGCCTTTGCAACTA+AGG + chr1_3:44816790-44816809 Msa0120180:CDS 40.0%
GTAGAAACATACCAGTTCCA+AGG - chr1_3:44817063-44817082 None:intergenic 40.0%
GTTCAAACATACACCACTTG+TGG - chr1_3:44817211-44817230 None:intergenic 40.0%
ATTAATCCGATTTCGGCATC+TGG + chr1_3:44817231-44817250 Msa0120180:CDS 40.0%
! AGACTTGCATTTTGTTGCTC+TGG + chr1_3:44817522-44817541 Msa0120180:three_prime_UTR 40.0%
ATGGAACTAGGACAGAATTC+TGG - chr1_3:44817653-44817672 None:intergenic 40.0%
AGGGTAAGGTAGAATTGTGG+AGG - chr1_3:44814503-44814522 None:intergenic 45.0%
ACAAAATCCTGAACCGTCTC+TGG - chr1_3:44814776-44814795 None:intergenic 45.0%
! TTTTGTTCAGATGCAGGTGC+AGG + chr1_3:44814790-44814809 Msa0120180:CDS 45.0%
! AGCTTTTAGTGAAGAGGGAG+AGG + chr1_3:44815327-44815346 Msa0120180:CDS 45.0%
GGAAGATGCAAATGAGATGC+CGG + chr1_3:44815348-44815367 Msa0120180:CDS 45.0%
CTCACCACATGAGGAAGAAA+AGG - chr1_3:44815391-44815410 None:intergenic 45.0%
! AGAGTATTAAGGAGGTCCCA+GGG - chr1_3:44816446-44816465 None:intergenic 45.0%
!! AAGAGTATTAAGGAGGTCCC+AGG - chr1_3:44816447-44816466 None:intergenic 45.0%
AGTGTCCCAACCCATAACAA+TGG + chr1_3:44816469-44816488 Msa0120180:intron 45.0%
GTGTCCCAACCCATAACAAT+GGG + chr1_3:44816470-44816489 Msa0120180:intron 45.0%
TGTCCCAACCCATAACAATG+GGG + chr1_3:44816471-44816490 Msa0120180:intron 45.0%
GTACCCCATTGTTATGGGTT+GGG - chr1_3:44816477-44816496 None:intergenic 45.0%
TGTACCCCATTGTTATGGGT+TGG - chr1_3:44816478-44816497 None:intergenic 45.0%
AACAATGGGGTACACCTTTG+GGG + chr1_3:44816484-44816503 Msa0120180:intron 45.0%
GTAGAGAAATCTCAAGGGTG+AGG + chr1_3:44816549-44816568 Msa0120180:intron 45.0%
CTGGAGCTGAAATTGGGTAT+AGG + chr1_3:44816735-44816754 Msa0120180:CDS 45.0%
GAGCTGAAATTGGGTATAGG+TGG + chr1_3:44816738-44816757 Msa0120180:CDS 45.0%
TATAGGTGGCACGTCATATG+AGG + chr1_3:44816752-44816771 Msa0120180:CDS 45.0%
GACAATTGGGTCAACTTGAC+TGG - chr1_3:44816942-44816961 None:intergenic 45.0%
CCGAAAAGGATGCGACAATT+GGG - chr1_3:44816955-44816974 None:intergenic 45.0%
! CCCAATTGTCGCATCCTTTT+CGG + chr1_3:44816952-44816971 Msa0120180:CDS 45.0%
! CCAATTGTCGCATCCTTTTC+GGG + chr1_3:44816953-44816972 Msa0120180:CDS 45.0%
! ACAAGGTGCAAGTATTGCCT+TGG + chr1_3:44817043-44817062 Msa0120180:CDS 45.0%
! TGCAAGTATTGCCTTGGAAC+TGG + chr1_3:44817049-44817068 Msa0120180:CDS 45.0%
! GAAGTACCAGATGCCGAAAT+CGG - chr1_3:44817240-44817259 None:intergenic 45.0%
TTTGGACACCTTGTCGTTGT+AGG - chr1_3:44817282-44817301 None:intergenic 45.0%
! ACAAGGTGTCCAAATTGCTC+TGG + chr1_3:44817288-44817307 Msa0120180:CDS 45.0%
TTTCCAGCACCAGAGCAATT+TGG - chr1_3:44817300-44817319 None:intergenic 45.0%
! AAATTGCTCTGGTGCTGGAA+AGG + chr1_3:44817299-44817318 Msa0120180:CDS 45.0%
AACTAGGACAGAATTCTGGC+AGG - chr1_3:44817649-44817668 None:intergenic 45.0%
!!! TTATAAAATTTGTAATTTTA+TGG + chr1_3:44817157-44817176 Msa0120180:intron 5.0%
AATTGCGTGCTCTTCTCCAC+AGG + chr1_3:44814600-44814619 Msa0120180:CDS 50.0%
CATCATTGAAGGGCCAGAGA+CGG + chr1_3:44814760-44814779 Msa0120180:CDS 50.0%
! GCGGTTTTCGTAAGCTATCC+TGG + chr1_3:44815057-44815076 Msa0120180:intron 50.0%
ATGGCAGCTGGAGCTGAAAT+TGG + chr1_3:44816728-44816747 Msa0120180:intron 50.0%
TGGCAGCTGGAGCTGAAATT+GGG + chr1_3:44816729-44816748 Msa0120180:intron 50.0%
CCCGAAAAGGATGCGACAAT+TGG - chr1_3:44816956-44816975 None:intergenic 50.0%
!! ATTGTCGCATCCTTTTCGGG+TGG + chr1_3:44816956-44816975 Msa0120180:CDS 50.0%
TACTTCTGTTAGACCCCTGC+AGG + chr1_3:44817254-44817273 Msa0120180:CDS 50.0%
TGTCGTTGTAGGAACCTGCA+GGG - chr1_3:44817271-44817290 None:intergenic 50.0%
TTGTCGTTGTAGGAACCTGC+AGG - chr1_3:44817272-44817291 None:intergenic 50.0%
TGCAGGTTCCTACAACGACA+AGG + chr1_3:44817271-44817290 Msa0120180:CDS 50.0%
TGTCCAAATTGCTCTGGTGC+TGG + chr1_3:44817294-44817313 Msa0120180:CDS 50.0%
CCATCTTCATCCCAGTGCAA+AGG - chr1_3:44817440-44817459 None:intergenic 50.0%
CCTTTGCACTGGGATGAAGA+TGG + chr1_3:44817437-44817456 Msa0120180:CDS 50.0%
TGCTCTTCTCCACAGGATGC+AGG + chr1_3:44814607-44814626 Msa0120180:CDS 55.0%
TCATTGGAGCCTGCATCCTG+TGG - chr1_3:44814619-44814638 None:intergenic 55.0%
!! TGGCGGGCTTATTGCACCAA+CGG + chr1_3:44815779-44815798 Msa0120180:CDS 55.0%
!!! TCCTTTTCGGGTGGAGCAGT+TGG + chr1_3:44816965-44816984 Msa0120180:CDS 55.0%
!! CAGGTTACTTGGCTTGCGCT+CGG + chr1_3:44817181-44817200 Msa0120180:intron 55.0%
GTCGTTGTAGGAACCTGCAG+GGG - chr1_3:44817270-44817289 None:intergenic 55.0%
TGTCCAACCTGCCTTTGCAC+TGG + chr1_3:44817426-44817445 Msa0120180:CDS 55.0%
GTCCAACCTGCCTTTGCACT+GGG + chr1_3:44817427-44817446 Msa0120180:CDS 55.0%
ATCCCAGTGCAAAGGCAGGT+TGG - chr1_3:44817432-44817451 None:intergenic 55.0%
CTTCATCCCAGTGCAAAGGC+AGG - chr1_3:44817436-44817455 None:intergenic 55.0%
TGAAGGGCCAGAGACGGTTC+AGG + chr1_3:44814766-44814785 Msa0120180:CDS 60.0%
GGAGATTGCGTGTGCAGCAG+CGG + chr1_3:44815287-44815306 Msa0120180:CDS 60.0%
AGCCGTAGGAGTCGAACCCT+GGG + chr1_3:44816427-44816446 Msa0120180:intron 60.0%
GTCCCAGGGTTCGACTCCTA+CGG - chr1_3:44816432-44816451 None:intergenic 60.0%
GCCAACTGCTCCACCCGAAA+AGG - chr1_3:44816969-44816988 None:intergenic 60.0%
!! TGCGCTCGGTGTTCCACAAG+TGG + chr1_3:44817195-44817214 Msa0120180:CDS 60.0%
GAGCCGTAGGAGTCGAACCC+TGG + chr1_3:44816426-44816445 Msa0120180:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 44814310 44817721 44814310 ID=Msa0120180;Name=Msa0120180
chr1_3 mRNA 44814310 44817721 44814310 ID=Msa0120180-mRNA-1;Parent=Msa0120180;Name=Msa0120180-mRNA-1;_AED=0.12;_eAED=0.12;_QI=171|1|1|1|1|1|8|224|305
chr1_3 exon 44814310 44814650 44814310 ID=Msa0120180-mRNA-1:exon:13424;Parent=Msa0120180-mRNA-1
chr1_3 exon 44814751 44814868 44814751 ID=Msa0120180-mRNA-1:exon:13425;Parent=Msa0120180-mRNA-1
chr1_3 exon 44815283 44815405 44815283 ID=Msa0120180-mRNA-1:exon:13426;Parent=Msa0120180-mRNA-1
chr1_3 exon 44815714 44815800 44815714 ID=Msa0120180-mRNA-1:exon:13427;Parent=Msa0120180-mRNA-1
chr1_3 exon 44816735 44816811 44816735 ID=Msa0120180-mRNA-1:exon:13428;Parent=Msa0120180-mRNA-1
chr1_3 exon 44816943 44817070 44816943 ID=Msa0120180-mRNA-1:exon:13429;Parent=Msa0120180-mRNA-1
chr1_3 exon 44817184 44817320 44817184 ID=Msa0120180-mRNA-1:exon:13430;Parent=Msa0120180-mRNA-1
chr1_3 exon 44817420 44817721 44817420 ID=Msa0120180-mRNA-1:exon:13431;Parent=Msa0120180-mRNA-1
chr1_3 five_prime_UTR 44814310 44814480 44814310 ID=Msa0120180-mRNA-1:five_prime_utr;Parent=Msa0120180-mRNA-1
chr1_3 CDS 44814481 44814650 44814481 ID=Msa0120180-mRNA-1:cds;Parent=Msa0120180-mRNA-1
chr1_3 CDS 44814751 44814868 44814751 ID=Msa0120180-mRNA-1:cds;Parent=Msa0120180-mRNA-1
chr1_3 CDS 44815283 44815405 44815283 ID=Msa0120180-mRNA-1:cds;Parent=Msa0120180-mRNA-1
chr1_3 CDS 44815714 44815800 44815714 ID=Msa0120180-mRNA-1:cds;Parent=Msa0120180-mRNA-1
chr1_3 CDS 44816735 44816811 44816735 ID=Msa0120180-mRNA-1:cds;Parent=Msa0120180-mRNA-1
chr1_3 CDS 44816943 44817070 44816943 ID=Msa0120180-mRNA-1:cds;Parent=Msa0120180-mRNA-1
chr1_3 CDS 44817184 44817320 44817184 ID=Msa0120180-mRNA-1:cds;Parent=Msa0120180-mRNA-1
chr1_3 CDS 44817420 44817497 44817420 ID=Msa0120180-mRNA-1:cds;Parent=Msa0120180-mRNA-1
chr1_3 three_prime_UTR 44817498 44817721 44817498 ID=Msa0120180-mRNA-1:three_prime_utr;Parent=Msa0120180-mRNA-1
Gene Sequence

>Msa0120180

ATGAATACTTTCTCTCCTTCCTCCACAATTCTACCTTACCCTTCACTTTCCAAAAACTCCATTTTCTTTGCCCCTTTTAAAGGTAAAACCAACCAATTTTCTTTTTCTAAGTCAAGGATAATTGCGTGCTCTTCTCCACAGGATGCAGGCTCCAATGAAATCACACCGAACAACTTTTGCATCATTGAAGGGCCAGAGACGGTTCAGGATTTTGTTCAGATGCAGGTGCAGGAAATTCAAGATAATATAAAGAGTAGACGCAATAAAATCTTTCTTCTTATGGAAGAGGTTAGGAGATTGCGTGTGCAGCAGCGGCTAAGAAGTATACAAAGAGCTTTTAGTGAAGAGGGAGAGGAAGATGCAAATGAGATGCCGGAAATTCCATCATCTATTCCTTTTCTTCCTCATGTGACACCCAACACTTTGAAGAAGCTCTATCTAACAGGCGCATCATTCATATCTGCAATAATTGTATTTGGCGGGCTTATTGCACCAACGCTGGAGCTGAAATTGGGTATAGGTGGCACGTCATATGAGGATTTCATAAGAAGCTTGCATTTGCCTTTGCAACTAAGTCAAGTTGACCCAATTGTCGCATCCTTTTCGGGTGGAGCAGTTGGCGTGATTTCAGTACTGATGTTAATTGAGGCTAATAATGTTGAGCAACAAGAGAAAACAAGGTGCAAGTATTGCCTTGGAACTGGTTACTTGGCTTGCGCTCGGTGTTCCACAAGTGGTGTATGTTTGAACATTAATCCGATTTCGGCATCTGGTACTTCTGTTAGACCCCTGCAGGTTCCTACAACGACAAGGTGTCCAAATTGCTCTGGTGCTGGAAAGGTTATGTGTCCAACCTGCCTTTGCACTGGGATGAAGATGGCAAGTGAACATGACCTGAGAATTGATCCATTTGACTAA

Protein sequence

>Msa0120180

MNTFSPSSTILPYPSLSKNSIFFAPFKGKTNQFSFSKSRIIACSSPQDAGSNEITPNNFCIIEGPETVQDFVQMQVQEIQDNIKSRRNKIFLLMEEVRRLRVQQRLRSIQRAFSEEGEEDANEMPEIPSSIPFLPHVTPNTLKKLYLTGASFISAIIVFGGLIAPTLELKLGIGGTSYEDFIRSLHLPLQLSQVDPIVASFSGGAVGVISVLMLIEANNVEQQEKTRCKYCLGTGYLACARCSTSGVCLNINPISASGTSVRPLQVPTTTRCPNCSGAGKVMCPTCLCTGMKMASEHDLRIDPFD*