AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0424470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0424470 MtrunA17_Chr3g0126171 75.732 239 11 2 1 192 1 239 6.06e-123 347
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0424470 AT1G21350.2 68.125 160 32 2 51 192 53 211 7.45e-73 220
Msa0424470 AT1G21350.3 58.289 187 32 2 51 192 53 238 1.38e-68 210
Msa0424470 AT1G21350.5 58.289 187 32 2 51 192 66 251 1.68e-68 210
Msa0424470 AT1G21350.4 80.000 100 17 2 93 192 41 137 2.38e-52 165
Msa0424470 AT1G21350.1 80.000 100 17 2 93 192 41 137 2.38e-52 165

Find 77 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAGAAAATTTCAGTTTA+TGG 0.119827 3_2:+74670934 Msa0424470:three_prime_UTR
CAGGATGTTGCACGGGATTT+TGG 0.149216 3_2:+74670482 Msa0424470:CDS
TTTCAGAGCCCCTCAATTTC+AGG 0.203819 3_2:+74667500 Msa0424470:CDS
TGTTGTAACTTGTTATAATA+AGG 0.217561 3_2:+74671318 Msa0424470:three_prime_UTR
AAAATTGAGGTTGCGAATAT+TGG 0.237901 3_2:+74667264 Msa0424470:five_prime_UTR
TTAGGTTCTACTGCCTCTTC+TGG 0.240913 3_2:+74667342 Msa0424470:CDS
GCATCTTCTGCCATCAATTC+TGG 0.244162 3_2:-74669208 None:intergenic
CTTCATTCACTTGCTTCATC+AGG 0.333547 3_2:-74671389 None:intergenic
AATAATAACATACCAGTAAC+TGG 0.338409 3_2:+74670715 Msa0424470:CDS
ACAGGTCAAAATTTCTTTCA+TGG 0.345462 3_2:-74671024 None:intergenic
TGCGAATATTGGATTAACTA+TGG 0.349160 3_2:+74667275 Msa0424470:exon
TGGTCACCATTTGTTCAGTT+AGG 0.362138 3_2:+74667324 Msa0424470:CDS
TGAGGCTCATCCAGCTCTAT+TGG 0.371238 3_2:+74667778 Msa0424470:CDS
GAAACAAACCTTCCAGTTAC+TGG 0.385727 3_2:-74670727 None:intergenic
ACCATGCTCTGTTTCCAAAC+CGG 0.385862 3_2:+74667380 Msa0424470:CDS
GCTTTAATAAGAAGCCTTGT+TGG 0.391621 3_2:-74667444 None:intergenic
GAAACCCAAGGTGACACCTT+TGG 0.400492 3_2:-74667481 None:intergenic
TTTGAGATGAAAACCCGGTT+TGG 0.412243 3_2:-74667394 None:intergenic
CCATGCTCTGTTTCCAAACC+GGG 0.417898 3_2:+74667381 Msa0424470:CDS
GCAGAAGATGCTAAATTGTC+TGG 0.420368 3_2:+74669220 Msa0424470:CDS
GCCTAAGAGTGACTTCTGTT+TGG 0.433647 3_2:+74667304 Msa0424470:CDS
AGCCTCTGACTGGAAAGGTT+TGG 0.435430 3_2:+74667741 Msa0424470:CDS
ACTGGTATGTTATTATTACT+TGG 0.444749 3_2:-74670709 None:intergenic
ATCCAACACTTCATGCAAAC+AGG 0.451730 3_2:-74670984 None:intergenic
CAGGTCAAAATTTCTTTCAT+GGG 0.452382 3_2:-74671023 None:intergenic
ACCAAACAGAAGTCACTCTT+AGG 0.454409 3_2:-74667305 None:intergenic
CTTTAATAAGAAGCCTTGTT+GGG 0.455706 3_2:-74667443 None:intergenic
ACATACAAGAAACAAAGAAC+AGG 0.456238 3_2:-74671298 None:intergenic
GTAGAACCTAACTGAACAAA+TGG 0.460254 3_2:-74667330 None:intergenic
GAGTCCAAAGGTGTCACCTT+GGG 0.460515 3_2:+74667477 Msa0424470:CDS
GACTGGAAAGGTTTGGACAT+TGG 0.462065 3_2:+74667748 Msa0424470:CDS
TGAATCATACCTCATCATAT+AGG 0.463182 3_2:-74669258 None:intergenic
ACGGTCAGTTTGATGATTCA+AGG 0.467280 3_2:+74670686 Msa0424470:CDS
TAGTGTGATTTGAAAAGAAA+TGG 0.467902 3_2:+74671161 Msa0424470:three_prime_UTR
AAATATGACCATGACATTGA+TGG 0.470164 3_2:-74670960 None:intergenic
TGGTCGAAGGCCGTTTGAGC+TGG 0.473440 3_2:+74670657 Msa0424470:CDS
CCAGCATCATCTTCTTCGTT+AGG 0.478174 3_2:-74667241 None:intergenic
ACAGGATGGACCAGAATTGA+TGG 0.497097 3_2:+74669198 Msa0424470:intron
ATGGAAAGAAAAGAACAAAC+AGG 0.497195 3_2:-74671135 None:intergenic
TTCCTGTTTGCATGAAGTGT+TGG 0.502686 3_2:+74670982 Msa0424470:three_prime_UTR
CAGAATCCTACCAATAGAGC+TGG 0.507380 3_2:-74667788 None:intergenic
TAGCTTTCAGAGCCTCTGAC+TGG 0.510935 3_2:+74667731 Msa0424470:intron
AGACAGCAACCTGAAATTGA+GGG 0.512113 3_2:-74667509 None:intergenic
GCGAGATAATTACAATGTAC+AGG 0.518182 3_2:-74671042 None:intergenic
AAGACAGCAACCTGAAATTG+AGG 0.522154 3_2:-74667510 None:intergenic
AGAAAGCATTTAATCAGAAG+AGG 0.522353 3_2:+74671265 Msa0424470:three_prime_UTR
CCGTGGTAAACCAGCTCAAA+CGG 0.528066 3_2:-74670667 None:intergenic
CATACCTCATCATATAGGTA+TGG 0.528343 3_2:-74669253 None:intergenic
TCATCATATAGGTATGGAAA+AGG 0.530498 3_2:-74669247 None:intergenic
CCTAACGAAGAAGATGATGC+TGG 0.540672 3_2:+74667241 Msa0424470:five_prime_UTR
TTTGCTCTGATGGTACCGGC+TGG 0.552310 3_2:-74670873 None:intergenic
TGCAGTCACAGGATGTTGCA+CGG 0.554754 3_2:+74670474 Msa0424470:intron
TTCAGAGCCTCTGACTGGAA+AGG 0.559382 3_2:+74667736 Msa0424470:CDS
TTTCAAAAGAGACTTGAGCT+TGG 0.561188 3_2:+74670828 Msa0424470:intron
GCAGTCACAGGATGTTGCAC+GGG 0.565333 3_2:+74670475 Msa0424470:intron
TCGTGTTCTGAGTGGCCAGC+CGG 0.569048 3_2:+74670858 Msa0424470:CDS
GTCCAAACCTTTCCAGTCAG+AGG 0.582049 3_2:-74667743 None:intergenic
TGAGTCCAAAGGTGTCACCT+TGG 0.583667 3_2:+74667476 Msa0424470:CDS
AATAATAACAGGATGGTCGA+AGG 0.587773 3_2:+74670644 Msa0424470:intron
AATTAAATGTAAAAGTACCT+AGG 0.590010 3_2:-74670898 None:intergenic
CATACAAGAAACAAAGAACA+GGG 0.590365 3_2:-74671297 None:intergenic
TATGGTCTCCATCAATGTCA+TGG 0.594320 3_2:+74670952 Msa0424470:three_prime_UTR
CCCGGTTTGGAAACAGAGCA+TGG 0.597843 3_2:-74667381 None:intergenic
TAATGACATGACATATTCAG+TGG 0.610052 3_2:-74671205 None:intergenic
AGAGAGTGAGAATCCAGAAG+AGG 0.628830 3_2:-74667355 None:intergenic
CCGTTTGAGCTGGTTTACCA+CGG 0.632650 3_2:+74670667 Msa0424470:CDS
GCTGCTAGAATTGAGTCCAA+AGG 0.635549 3_2:+74667465 Msa0424470:CDS
GTGTTGGATGCAGCATAAAG+TGG 0.640512 3_2:+74670998 Msa0424470:three_prime_UTR
TTGAGGGGCTCTGAAACCCA+AGG 0.642601 3_2:-74667493 None:intergenic
ATAACATACCAGTAACTGGA+AGG 0.643706 3_2:+74670719 Msa0424470:CDS
GAAAGTACTCATACCCAACA+AGG 0.653347 3_2:+74667430 Msa0424470:CDS
TTGAGTTTGAGATGAAAACC+CGG 0.657884 3_2:-74667399 None:intergenic
GCAATAGATCGTGTTCTGAG+TGG 0.662500 3_2:+74670850 Msa0424470:CDS
GACAGCAACCTGAAATTGAG+GGG 0.667527 3_2:-74667508 None:intergenic
AAGATGATGCTGGAAAATTG+AGG 0.673094 3_2:+74667251 Msa0424470:five_prime_UTR
TTGAATCATCAAACTGACCG+TGG 0.684690 3_2:-74670684 None:intergenic
ATACAAGAAACAAAGAACAG+GGG 0.717494 3_2:-74671296 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTCATTAAAAAAAACTT+TGG + chr3_2:74668391-74668410 Msa0424470:intron 10.0%
!! GACAAAAATAATAATTAAAT+GGG - chr3_2:74669040-74669059 None:intergenic 10.0%
!! AGACAAAAATAATAATTAAA+TGG - chr3_2:74669041-74669060 None:intergenic 10.0%
!!! AAATAATTTGTTTCTTTTTT+TGG + chr3_2:74669802-74669821 Msa0424470:intron 10.0%
!!! GTTTTATTATATTATATTAC+TGG - chr3_2:74670427-74670446 None:intergenic 10.0%
!! TTAATTAATCAAATAATAAC+AGG + chr3_2:74670633-74670652 Msa0424470:intron 10.0%
!! AGAACAACATAAAAATAAAA+AGG - chr3_2:74667655-74667674 None:intergenic 15.0%
!!! TTATGTTGTTCTTTTAAATA+TGG + chr3_2:74667663-74667682 Msa0424470:intron 15.0%
!!! TATGTTGTTCTTTTAAATAT+GGG + chr3_2:74667664-74667683 Msa0424470:intron 15.0%
!! GTAACATATTATAAAGAAAA+GGG + chr3_2:74669704-74669723 Msa0424470:intron 15.0%
!! TCATAAATTTATTTATACTG+TGG + chr3_2:74670134-74670153 Msa0424470:intron 15.0%
!! ATGTTTATATAATTTGGAAA+AGG - chr3_2:74670273-74670292 None:intergenic 15.0%
!!! TTTTTAAAAAGGTAAAATTC+TGG - chr3_2:74670521-74670540 None:intergenic 15.0%
!!! AGAATTTTACCTTTTTAAAA+AGG + chr3_2:74670520-74670539 Msa0424470:CDS 15.0%
!!! TTGTAAATACCTTTTTAAAA+AGG - chr3_2:74670532-74670551 None:intergenic 15.0%
!!! AATAAGTTTTAATTTCCAAA+AGG - chr3_2:74671358-74671377 None:intergenic 15.0%
!!! TTAAAACTTATTTTCATACA+TGG + chr3_2:74671366-74671385 Msa0424470:three_prime_UTR 15.0%
!!! GTTACATTTGAATTTTTGTT+TGG + chr3_2:74667691-74667710 Msa0424470:intron 20.0%
!!! TTGTTTTCATAAGCTATATA+CGG + chr3_2:74668053-74668072 Msa0424470:intron 20.0%
!! TTTATGCATCATAATTCATA+AGG - chr3_2:74668724-74668743 None:intergenic 20.0%
!! TGTCTTTATTATATATAACC+TGG + chr3_2:74669366-74669385 Msa0424470:intron 20.0%
!! GGTAACATATTATAAAGAAA+AGG + chr3_2:74669703-74669722 Msa0424470:intron 20.0%
!!! AATTTGTTTCTTTTTTTGGT+AGG + chr3_2:74669806-74669825 Msa0424470:intron 20.0%
!! GAGTAACAAATTTGTATAAA+GGG - chr3_2:74670060-74670079 None:intergenic 20.0%
!! AGAGTAACAAATTTGTATAA+AGG - chr3_2:74670061-74670080 None:intergenic 20.0%
!! TTAATCAAATAATAACAGGA+TGG + chr3_2:74670637-74670656 Msa0424470:intron 20.0%
!!! AATTAAATGTAAAAGTACCT+AGG - chr3_2:74670901-74670920 None:intergenic 20.0%
!!! AATTTTCTCAAACAATCAAA+AGG - chr3_2:74670926-74670945 None:intergenic 20.0%
!! TTTGAGAAAATTTCAGTTTA+TGG + chr3_2:74670934-74670953 Msa0424470:three_prime_UTR 20.0%
!!! GTTTTATAGGTTAATGATTA+AGG + chr3_2:74671229-74671248 Msa0424470:three_prime_UTR 20.0%
!!! TGTTGTAACTTGTTATAATA+AGG + chr3_2:74671318-74671337 Msa0424470:three_prime_UTR 20.0%
!!! CTTATAACTTTCTGTTTTTC+TGG - chr3_2:74667221-74667240 None:intergenic 25.0%
! CATGTGATTACATTTAACTA+TGG - chr3_2:74667597-74667616 None:intergenic 25.0%
! TTAAATGTAATCACATGTGT+CGG + chr3_2:74667600-74667619 Msa0424470:intron 25.0%
!!! CATTTGAATTTTTGTTTGGA+TGG + chr3_2:74667695-74667714 Msa0424470:intron 25.0%
! TATGTTTCTTGTTCTATGTT+AGG + chr3_2:74667854-74667873 Msa0424470:intron 25.0%
!! TTAAGTTGTTTATCTAAGCA+GGG - chr3_2:74667902-74667921 None:intergenic 25.0%
!! ATTAAGTTGTTTATCTAAGC+AGG - chr3_2:74667903-74667922 None:intergenic 25.0%
! AATTTGTAGCTTACAGTATA+AGG + chr3_2:74667920-74667939 Msa0424470:intron 25.0%
! ATTTGTAGCTTACAGTATAA+GGG + chr3_2:74667921-74667940 Msa0424470:intron 25.0%
!! TGTTTTCATAAGCTATATAC+GGG + chr3_2:74668054-74668073 Msa0424470:intron 25.0%
! AGAGAAACAAACTACAATAA+CGG - chr3_2:74668099-74668118 None:intergenic 25.0%
!!! TATTGTAGTTTGTTTCTCTT+AGG + chr3_2:74668100-74668119 Msa0424470:intron 25.0%
! TCAAATAAGCCAATTCAAAT+AGG + chr3_2:74668295-74668314 Msa0424470:intron 25.0%
! ATATGAACTCATTCTTACTA+GGG - chr3_2:74668321-74668340 None:intergenic 25.0%
! AAGAATGAGTTCATATGAAA+TGG + chr3_2:74668325-74668344 Msa0424470:intron 25.0%
! AGAATGAGTTCATATGAAAT+GGG + chr3_2:74668326-74668345 Msa0424470:intron 25.0%
!! AGAATAAAGCATGAGTATTT+TGG + chr3_2:74668743-74668762 Msa0424470:intron 25.0%
!!! CTTTTGTTGCTTATATTTTG+TGG + chr3_2:74668786-74668805 Msa0424470:intron 25.0%
!!! TTTTTCAGGTGTATAACAAA+TGG - chr3_2:74668906-74668925 None:intergenic 25.0%
!!! TATTTTTGTCTTTCTACAGA+AGG + chr3_2:74669050-74669069 Msa0424470:intron 25.0%
! AAATGAATTTACTATCACCT+GGG - chr3_2:74669120-74669139 None:intergenic 25.0%
! GAATTGTGAATACTTAAAAC+AGG - chr3_2:74669295-74669314 None:intergenic 25.0%
! TTAAGTATTCACAATTCACA+TGG + chr3_2:74669298-74669317 Msa0424470:intron 25.0%
! GATAAAAAATAATGTTTGCC+AGG - chr3_2:74669387-74669406 None:intergenic 25.0%
!! GTATAGATCACATATTTTCT+TGG - chr3_2:74669649-74669668 None:intergenic 25.0%
!! GCAAAGAAGCTAATTATTTT+GGG - chr3_2:74669846-74669865 None:intergenic 25.0%
!! AGCAAAGAAGCTAATTATTT+TGG - chr3_2:74669847-74669866 None:intergenic 25.0%
! TATTTGAACTCAACACTTAA+AGG + chr3_2:74669906-74669925 Msa0424470:intron 25.0%
! TTACAACACATGATCAAATA+TGG - chr3_2:74669999-74670018 None:intergenic 25.0%
! AATCCAAATCACATAAACAT+TGG + chr3_2:74670184-74670203 Msa0424470:intron 25.0%
! TACGAAACTAAAGCATAATA+TGG + chr3_2:74670226-74670245 Msa0424470:intron 25.0%
! ACTTCAAATCTTCAGTAAAT+TGG - chr3_2:74670396-74670415 None:intergenic 25.0%
! ACTGGTATGTTATTATTACT+TGG - chr3_2:74670712-74670731 None:intergenic 25.0%
! AATAATAACATACCAGTAAC+TGG + chr3_2:74670715-74670734 Msa0424470:CDS 25.0%
!! TTTTCAAATCACACTATGAA+TGG - chr3_2:74671157-74671176 None:intergenic 25.0%
! TAGTGTGATTTGAAAAGAAA+TGG + chr3_2:74671161-74671180 Msa0424470:three_prime_UTR 25.0%
!!! GTCATGTCATTAAGTTTTAT+AGG + chr3_2:74671216-74671235 Msa0424470:three_prime_UTR 25.0%
!! GAAATATTTTGCAATCCTTT+TGG + chr3_2:74671340-74671359 Msa0424470:three_prime_UTR 25.0%
AAAATTGAGGTTGCGAATAT+TGG + chr3_2:74667264-74667283 Msa0424470:five_prime_UTR 30.0%
TGCGAATATTGGATTAACTA+TGG + chr3_2:74667275-74667294 Msa0424470:exon 30.0%
!! CTTTAATAAGAAGCCTTGTT+GGG - chr3_2:74667446-74667465 None:intergenic 30.0%
GAGAAACAAACTACAATAAC+GGG - chr3_2:74668098-74668117 None:intergenic 30.0%
CATATGAACTCATTCTTACT+AGG - chr3_2:74668322-74668341 None:intergenic 30.0%
! AATTTCACTTGCTTGCATTT+TGG - chr3_2:74668353-74668372 None:intergenic 30.0%
!!! GAGAATGCTATTTTGTAAGT+AGG + chr3_2:74668413-74668432 Msa0424470:intron 30.0%
!!! TGCTATTTTGTAAGTAGGTT+AGG + chr3_2:74668418-74668437 Msa0424470:intron 30.0%
!!! GCTTTACAATGACTTTTTTC+AGG - chr3_2:74668920-74668939 None:intergenic 30.0%
GCTTACTGAATTCTATATGA+AGG + chr3_2:74668938-74668957 Msa0424470:intron 30.0%
AATGAATTTACTATCACCTG+GGG - chr3_2:74669119-74669138 None:intergenic 30.0%
GAAATGAATTTACTATCACC+TGG - chr3_2:74669121-74669140 None:intergenic 30.0%
GTGATAGTAAATTCATTTCC+TGG + chr3_2:74669122-74669141 Msa0424470:intron 30.0%
TCATCATATAGGTATGGAAA+AGG - chr3_2:74669250-74669269 None:intergenic 30.0%
! TTTTCCATACCTATATGATG+AGG + chr3_2:74669249-74669268 Msa0424470:CDS 30.0%
TGAATCATACCTCATCATAT+AGG - chr3_2:74669261-74669280 None:intergenic 30.0%
TCACAATTCACATGGTTTAT+CGG + chr3_2:74669306-74669325 Msa0424470:intron 30.0%
TACTCTGTTTAGCTATAATG+TGG + chr3_2:74669529-74669548 Msa0424470:intron 30.0%
ACTCTGTTTAGCTATAATGT+GGG + chr3_2:74669530-74669549 Msa0424470:intron 30.0%
TATAATCCACATCTGTCAAT+TGG + chr3_2:74669589-74669608 Msa0424470:intron 30.0%
ATAATCCACATCTGTCAATT+GGG + chr3_2:74669590-74669609 Msa0424470:intron 30.0%
!!! TATTTTCTTGGTGATGTCTT+AGG - chr3_2:74669637-74669656 None:intergenic 30.0%
AAAGGGTAAAAAACATCTGT+AGG + chr3_2:74669721-74669740 Msa0424470:intron 30.0%
!!! TTCTTTTTTTGGTAGGAAAG+AGG + chr3_2:74669813-74669832 Msa0424470:intron 30.0%
!!! TCTTTTTTTGGTAGGAAAGA+GGG + chr3_2:74669814-74669833 Msa0424470:intron 30.0%
TGTGTTGTAAACAAATGTGA+CGG + chr3_2:74670009-74670028 Msa0424470:intron 30.0%
! TTTCTTTAGCTCAATCAAAG+TGG + chr3_2:74670091-74670110 Msa0424470:intron 30.0%
TCAAAGTGGTACTTAACAAT+TGG + chr3_2:74670105-74670124 Msa0424470:intron 30.0%
GTACCAATGTTTATGTGATT+TGG - chr3_2:74670190-74670209 None:intergenic 30.0%
! TAGAAGATCTTTTACCTGAT+GGG + chr3_2:74670355-74670374 Msa0424470:intron 30.0%
AATAAAACCCTGATCTTTAG+TGG + chr3_2:74670439-74670458 Msa0424470:intron 30.0%
AAATATGACCATGACATTGA+TGG - chr3_2:74670963-74670982 None:intergenic 30.0%
CAGGTCAAAATTTCTTTCAT+GGG - chr3_2:74671026-74671045 None:intergenic 30.0%
ACAGGTCAAAATTTCTTTCA+TGG - chr3_2:74671027-74671046 None:intergenic 30.0%
ATGGAAAGAAAAGAACAAAC+AGG - chr3_2:74671138-74671157 None:intergenic 30.0%
TAATGACATGACATATTCAG+TGG - chr3_2:74671208-74671227 None:intergenic 30.0%
!! AGAAAGCATTTAATCAGAAG+AGG + chr3_2:74671265-74671284 Msa0424470:three_prime_UTR 30.0%
ATACAAGAAACAAAGAACAG+GGG - chr3_2:74671299-74671318 None:intergenic 30.0%
CATACAAGAAACAAAGAACA+GGG - chr3_2:74671300-74671319 None:intergenic 30.0%
ACATACAAGAAACAAAGAAC+AGG - chr3_2:74671301-74671320 None:intergenic 30.0%
AAGATGATGCTGGAAAATTG+AGG + chr3_2:74667251-74667270 Msa0424470:five_prime_UTR 35.0%
GTAGAACCTAACTGAACAAA+TGG - chr3_2:74667333-74667352 None:intergenic 35.0%
! TTGAGTTTGAGATGAAAACC+CGG - chr3_2:74667402-74667421 None:intergenic 35.0%
! GCTTTAATAAGAAGCCTTGT+TGG - chr3_2:74667447-74667466 None:intergenic 35.0%
! GGTTGCTGTCTTATTAATCA+CGG + chr3_2:74667521-74667540 Msa0424470:intron 35.0%
AAAGGAGTAAAGCAAAGACT+CGG - chr3_2:74667637-74667656 None:intergenic 35.0%
! TTGGACATTGGAAGATTTTG+AGG + chr3_2:74667760-74667779 Msa0424470:CDS 35.0%
TCTTGTTCTATGTTAGGCTT+AGG + chr3_2:74667860-74667879 Msa0424470:intron 35.0%
TTACTAGGGCCTATTTGAAT+TGG - chr3_2:74668307-74668326 None:intergenic 35.0%
GTCAGTGCTTCATAAAATGA+AGG - chr3_2:74668475-74668494 None:intergenic 35.0%
! TGGTATGTGGCTAAGTTTTA+TGG + chr3_2:74668680-74668699 Msa0424470:intron 35.0%
!! AGTTTTATGGACTGTTCTTG+TGG + chr3_2:74668693-74668712 Msa0424470:intron 35.0%
GGTAGTCAAACAAATTACTG+TGG + chr3_2:74668959-74668978 Msa0424470:intron 35.0%
ATGAATTTACTATCACCTGG+GGG - chr3_2:74669118-74669137 None:intergenic 35.0%
TTTCAACGTAGCTATATTCC+AGG - chr3_2:74669143-74669162 None:intergenic 35.0%
TATTGAATGATCGTCCAACT+TGG + chr3_2:74669164-74669183 Msa0424470:intron 35.0%
CATACCTCATCATATAGGTA+TGG - chr3_2:74669256-74669275 None:intergenic 35.0%
TTAAATAGACATAGCTGTGC+AGG - chr3_2:74669343-74669362 None:intergenic 35.0%
ATATAGACTTAACCCTCCAA+AGG + chr3_2:74669451-74669470 Msa0424470:intron 35.0%
GCAATCTACTTGTTCTCTAA+TGG - chr3_2:74669508-74669527 None:intergenic 35.0%
!!! TACGCACACATGTTTTAACA+AGG - chr3_2:74669679-74669698 None:intergenic 35.0%
TAAAACATGTGTGCGTAGAA+AGG + chr3_2:74669682-74669701 Msa0424470:intron 35.0%
! GTAGAAGATCTTTTACCTGA+TGG + chr3_2:74670354-74670373 Msa0424470:intron 35.0%
! AGAAGATCTTTTACCTGATG+GGG + chr3_2:74670356-74670375 Msa0424470:intron 35.0%
AATAATAACAGGATGGTCGA+AGG + chr3_2:74670644-74670663 Msa0424470:intron 35.0%
ATAACATACCAGTAACTGGA+AGG + chr3_2:74670719-74670738 Msa0424470:CDS 35.0%
TTTCAAAAGAGACTTGAGCT+TGG + chr3_2:74670828-74670847 Msa0424470:intron 35.0%
GCGAGATAATTACAATGTAC+AGG - chr3_2:74671045-74671064 None:intergenic 35.0%
ATAGAACCGAACGAAAAACT+TGG - chr3_2:74671089-74671108 None:intergenic 35.0%
ACCAAACAGAAGTCACTCTT+AGG - chr3_2:74667308-74667327 None:intergenic 40.0%
TGGTCACCATTTGTTCAGTT+AGG + chr3_2:74667324-74667343 Msa0424470:CDS 40.0%
! TTTGAGATGAAAACCCGGTT+TGG - chr3_2:74667397-74667416 None:intergenic 40.0%
!! GAAAGTACTCATACCCAACA+AGG + chr3_2:74667430-74667449 Msa0424470:CDS 40.0%
AGACAGCAACCTGAAATTGA+GGG - chr3_2:74667512-74667531 None:intergenic 40.0%
AAGACAGCAACCTGAAATTG+AGG - chr3_2:74667513-74667532 None:intergenic 40.0%
! GTCTTATTAATCACGGACAC+CGG + chr3_2:74667528-74667547 Msa0424470:intron 40.0%
! TATACGGGTGTCGCATATAT+AGG + chr3_2:74668069-74668088 Msa0424470:intron 40.0%
! ATACGGGTGTCGCATATATA+GGG + chr3_2:74668070-74668089 Msa0424470:intron 40.0%
AAGCACTTGTGAGACTGTTT+AGG - chr3_2:74668259-74668278 None:intergenic 40.0%
!! ATGAAGCACTGACAACACAA+TGG + chr3_2:74668482-74668501 Msa0424470:intron 40.0%
AACCATCAATGTCAGTGTCA+CGG + chr3_2:74668539-74668558 Msa0424470:intron 40.0%
! ATTCAGATTGAAGGCGTGTA+TGG - chr3_2:74668585-74668604 None:intergenic 40.0%
CTACGTAGCATTCAGATTGA+AGG - chr3_2:74668594-74668613 None:intergenic 40.0%
! TACATTTTGCACACTGTAGC+TGG - chr3_2:74668643-74668662 None:intergenic 40.0%
ACATACCACAAAATGGTGCA+TGG - chr3_2:74668668-74668687 None:intergenic 40.0%
! ATGCACCATTTTGTGGTATG+TGG + chr3_2:74668667-74668686 Msa0424470:intron 40.0%
CTTAGCCACATACCACAAAA+TGG - chr3_2:74668675-74668694 None:intergenic 40.0%
CCTGCATGACAACATAAAGA+GGG - chr3_2:74668860-74668879 None:intergenic 40.0%
ACCTGCATGACAACATAAAG+AGG - chr3_2:74668861-74668880 None:intergenic 40.0%
GGTGTATAACAAATGGACAG+TGG - chr3_2:74668899-74668918 None:intergenic 40.0%
ATATTTCTTTCCTCAGCAGC+AGG + chr3_2:74668993-74669012 Msa0424470:intron 40.0%
GGTCTTGACTTATGCAAGTT+TGG - chr3_2:74669019-74669038 None:intergenic 40.0%
GCAGAAGATGCTAAATTGTC+TGG + chr3_2:74669220-74669239 Msa0424470:CDS 40.0%
!! GATTTTGGAGGGAAAACCTT+TGG - chr3_2:74669470-74669489 None:intergenic 40.0%
!! TTTGCGAGTTGGATTTTGGA+GGG - chr3_2:74669481-74669500 None:intergenic 40.0%
!! TGTGTTTGCGAGTTGGATTT+TGG - chr3_2:74669485-74669504 None:intergenic 40.0%
CTTAACCCAATTGACAGATG+TGG - chr3_2:74669598-74669617 None:intergenic 40.0%
TGTAGGCTTCAACTTCTCTT+AGG + chr3_2:74669738-74669757 Msa0424470:intron 40.0%
! TGCTATCAGCTCTCAGTTTT+AGG - chr3_2:74670302-74670321 None:intergenic 40.0%
TGCTTTCAATTAACCCCATC+AGG - chr3_2:74670372-74670391 None:intergenic 40.0%
GGACATTCCACTAAAGATCA+GGG - chr3_2:74670449-74670468 None:intergenic 40.0%
AGGACATTCCACTAAAGATC+AGG - chr3_2:74670450-74670469 None:intergenic 40.0%
ATGTCCTTTATTGCAGTCAC+AGG + chr3_2:74670463-74670482 Msa0424470:intron 40.0%
ACATCCTGTGACTGCAATAA+AGG - chr3_2:74670470-74670489 None:intergenic 40.0%
AAACACTGATCAACAGTGAC+TGG - chr3_2:74670555-74670574 None:intergenic 40.0%
AGTTAAACCCTCAGATGTCA+AGG + chr3_2:74670590-74670609 Msa0424470:intron 40.0%
CATCATACCTTGACATCTGA+GGG - chr3_2:74670600-74670619 None:intergenic 40.0%
ACATCATACCTTGACATCTG+AGG - chr3_2:74670601-74670620 None:intergenic 40.0%
TTGAATCATCAAACTGACCG+TGG - chr3_2:74670687-74670706 None:intergenic 40.0%
! ACGGTCAGTTTGATGATTCA+AGG + chr3_2:74670686-74670705 Msa0424470:CDS 40.0%
GAAACAAACCTTCCAGTTAC+TGG - chr3_2:74670730-74670749 None:intergenic 40.0%
TACCATCAGAGCAAAAACCT+AGG + chr3_2:74670881-74670900 Msa0424470:CDS 40.0%
! TACCTAGGTTTTTGCTCTGA+TGG - chr3_2:74670886-74670905 None:intergenic 40.0%
TATGGTCTCCATCAATGTCA+TGG + chr3_2:74670952-74670971 Msa0424470:three_prime_UTR 40.0%
TTCCTGTTTGCATGAAGTGT+TGG + chr3_2:74670982-74671001 Msa0424470:three_prime_UTR 40.0%
ATCCAACACTTCATGCAAAC+AGG - chr3_2:74670987-74671006 None:intergenic 40.0%
! GTGAGTCCAAGTTTTTCGTT+CGG + chr3_2:74671080-74671099 Msa0424470:three_prime_UTR 40.0%
CCAGCATCATCTTCTTCGTT+AGG - chr3_2:74667244-74667263 None:intergenic 45.0%
CCTAACGAAGAAGATGATGC+TGG + chr3_2:74667241-74667260 Msa0424470:five_prime_UTR 45.0%
GCCTAAGAGTGACTTCTGTT+TGG + chr3_2:74667304-74667323 Msa0424470:CDS 45.0%
TTAGGTTCTACTGCCTCTTC+TGG + chr3_2:74667342-74667361 Msa0424470:CDS 45.0%
AGAGAGTGAGAATCCAGAAG+AGG - chr3_2:74667358-74667377 None:intergenic 45.0%
ACCATGCTCTGTTTCCAAAC+CGG + chr3_2:74667380-74667399 Msa0424470:CDS 45.0%
GCTGCTAGAATTGAGTCCAA+AGG + chr3_2:74667465-74667484 Msa0424470:CDS 45.0%
TTTCAGAGCCCCTCAATTTC+AGG + chr3_2:74667500-74667519 Msa0424470:CDS 45.0%
GACAGCAACCTGAAATTGAG+GGG - chr3_2:74667511-74667530 None:intergenic 45.0%
CGATGTATCAGTGTCATGTC+CGG - chr3_2:74667550-74667569 None:intergenic 45.0%
GACTGGAAAGGTTTGGACAT+TGG + chr3_2:74667748-74667767 Msa0424470:CDS 45.0%
CAGAATCCTACCAATAGAGC+TGG - chr3_2:74667791-74667810 None:intergenic 45.0%
GCTTACCTGTTCTTCTTGTG+CGG + chr3_2:74668122-74668141 Msa0424470:intron 45.0%
ACCATCAATGTCAGTGTCAC+GGG + chr3_2:74668540-74668559 Msa0424470:intron 45.0%
GTATGGTGTCCAAAACGTGT+TGG - chr3_2:74668568-74668587 None:intergenic 45.0%
! GTACTCCATGCACCATTTTG+TGG + chr3_2:74668660-74668679 Msa0424470:intron 45.0%
! TTATCGTTTTCCCTCCTCAG+TGG + chr3_2:74668814-74668833 Msa0424470:intron 45.0%
AACATCGTTACCACTGAGGA+GGG - chr3_2:74668827-74668846 None:intergenic 45.0%
AAACATCGTTACCACTGAGG+AGG - chr3_2:74668828-74668847 None:intergenic 45.0%
GACAAACATCGTTACCACTG+AGG - chr3_2:74668831-74668850 None:intergenic 45.0%
GCATGACAACATAAAGAGGG+AGG - chr3_2:74668857-74668876 None:intergenic 45.0%
CCCTCTTTATGTTGTCATGC+AGG + chr3_2:74668857-74668876 Msa0424470:intron 45.0%
ACAGGATGGACCAGAATTGA+TGG + chr3_2:74669198-74669217 Msa0424470:intron 45.0%
GCATCTTCTGCCATCAATTC+TGG - chr3_2:74669211-74669230 None:intergenic 45.0%
TTGGAGGGAAAACCTTTGGA+GGG - chr3_2:74669466-74669485 None:intergenic 45.0%
TTTGGAGGGAAAACCTTTGG+AGG - chr3_2:74669467-74669486 None:intergenic 45.0%
!! GTTTGCGAGTTGGATTTTGG+AGG - chr3_2:74669482-74669501 None:intergenic 45.0%
CTAATGGTGTGTTTGCGAGT+TGG - chr3_2:74669492-74669511 None:intergenic 45.0%
ACAAATGTGACGGCAAACGT+TGG + chr3_2:74670019-74670038 Msa0424470:intron 45.0%
CAAATGTGACGGCAAACGTT+GGG + chr3_2:74670020-74670039 Msa0424470:intron 45.0%
! GCAATAGATCGTGTTCTGAG+TGG + chr3_2:74670850-74670869 Msa0424470:CDS 45.0%
! GGTTTTTGCTCTGATGGTAC+CGG - chr3_2:74670880-74670899 None:intergenic 45.0%
GTGTTGGATGCAGCATAAAG+TGG + chr3_2:74670998-74671017 Msa0424470:three_prime_UTR 45.0%
!!! TTTTTTAATGAATTTTTTAA+TGG - chr3_2:74668386-74668405 None:intergenic 5.0%
!! ATAAAAATGTTTATATAATT+TGG - chr3_2:74670279-74670298 None:intergenic 5.0%
!! AAATAAATAAATTAATCAAA+AGG - chr3_2:74670806-74670825 None:intergenic 5.0%
CCATGCTCTGTTTCCAAACC+GGG + chr3_2:74667381-74667400 Msa0424470:CDS 50.0%
!! TGAGTCCAAAGGTGTCACCT+TGG + chr3_2:74667476-74667495 Msa0424470:CDS 50.0%
!! GAGTCCAAAGGTGTCACCTT+GGG + chr3_2:74667477-74667496 Msa0424470:CDS 50.0%
GAAACCCAAGGTGACACCTT+TGG - chr3_2:74667484-74667503 None:intergenic 50.0%
TAGCTTTCAGAGCCTCTGAC+TGG + chr3_2:74667731-74667750 Msa0424470:intron 50.0%
TTCAGAGCCTCTGACTGGAA+AGG + chr3_2:74667736-74667755 Msa0424470:CDS 50.0%
AGCCTCTGACTGGAAAGGTT+TGG + chr3_2:74667741-74667760 Msa0424470:CDS 50.0%
GTCCAAACCTTTCCAGTCAG+AGG - chr3_2:74667746-74667765 None:intergenic 50.0%
TGAGGCTCATCCAGCTCTAT+TGG + chr3_2:74667778-74667797 Msa0424470:CDS 50.0%
GCTCATCCAGCTCTATTGGT+AGG + chr3_2:74667782-74667801 Msa0424470:intron 50.0%
CTACACCGCACAAGAAGAAC+AGG - chr3_2:74668130-74668149 None:intergenic 50.0%
TGTGACGCAGAACTCCAAGT+TGG - chr3_2:74669181-74669200 None:intergenic 50.0%
AACTTGGAGTTCTGCGTCAC+AGG + chr3_2:74669180-74669199 Msa0424470:intron 50.0%
TGCAGTCACAGGATGTTGCA+CGG + chr3_2:74670474-74670493 Msa0424470:intron 50.0%
! CAGGATGTTGCACGGGATTT+TGG + chr3_2:74670482-74670501 Msa0424470:CDS 50.0%
CCGTGGTAAACCAGCTCAAA+CGG - chr3_2:74670670-74670689 None:intergenic 50.0%
! CCGTTTGAGCTGGTTTACCA+CGG + chr3_2:74670667-74670686 Msa0424470:CDS 50.0%
!! CCCGGTTTGGAAACAGAGCA+TGG - chr3_2:74667384-74667403 None:intergenic 55.0%
!! TTGAGGGGCTCTGAAACCCA+AGG - chr3_2:74667496-74667515 None:intergenic 55.0%
GCCCGTGACACTGACATTGA+TGG - chr3_2:74668544-74668563 None:intergenic 55.0%
! TCACGGGCACCAACACGTTT+TGG + chr3_2:74668556-74668575 Msa0424470:intron 55.0%
! TACTATCACCTGGGGGTGTG+TGG - chr3_2:74669111-74669130 None:intergenic 55.0%
TGGAGTTCTGCGTCACAGGA+TGG + chr3_2:74669184-74669203 Msa0424470:intron 55.0%
GCAGTCACAGGATGTTGCAC+GGG + chr3_2:74670475-74670494 Msa0424470:intron 55.0%
!! TTTGCTCTGATGGTACCGGC+TGG - chr3_2:74670876-74670895 None:intergenic 55.0%
GCAAGTTTGGCCTGCTGCTG+AGG - chr3_2:74669006-74669025 None:intergenic 60.0%
TGGTCGAAGGCCGTTTGAGC+TGG + chr3_2:74670657-74670676 Msa0424470:CDS 60.0%
! TCGTGTTCTGAGTGGCCAGC+CGG + chr3_2:74670858-74670877 Msa0424470:CDS 60.0%
TTCCGTAGCCACACACCCCC+AGG + chr3_2:74669100-74669119 Msa0424470:intron 65.0%
! CACCTGGGGGTGTGTGGCTA+CGG - chr3_2:74669105-74669124 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 74667211 74671401 74667211 ID=Msa0424470;Name=Msa0424470
chr3_2 mRNA 74667211 74671401 74667211 ID=Msa0424470-mRNA-1;Parent=Msa0424470;Name=Msa0424470-mRNA-1;_AED=0.15;_eAED=0.15;_QI=83|0.8|1|1|0.8|1|6|483|197
chr3_2 exon 74667211 74667521 74667211 ID=Msa0424470-mRNA-1:exon:18874;Parent=Msa0424470-mRNA-1
chr3_2 exon 74667734 74667799 74667734 ID=Msa0424470-mRNA-1:exon:18875;Parent=Msa0424470-mRNA-1
chr3_2 exon 74669202 74669270 74669202 ID=Msa0424470-mRNA-1:exon:18876;Parent=Msa0424470-mRNA-1
chr3_2 exon 74670479 74670541 74670479 ID=Msa0424470-mRNA-1:exon:18877;Parent=Msa0424470-mRNA-1
chr3_2 exon 74670655 74670740 74670655 ID=Msa0424470-mRNA-1:exon:18878;Parent=Msa0424470-mRNA-1
chr3_2 exon 74670837 74671401 74670837 ID=Msa0424470-mRNA-1:exon:18879;Parent=Msa0424470-mRNA-1
chr3_2 five_prime_UTR 74667211 74667293 74667211 ID=Msa0424470-mRNA-1:five_prime_utr;Parent=Msa0424470-mRNA-1
chr3_2 CDS 74667294 74667521 74667294 ID=Msa0424470-mRNA-1:cds;Parent=Msa0424470-mRNA-1
chr3_2 CDS 74667734 74667799 74667734 ID=Msa0424470-mRNA-1:cds;Parent=Msa0424470-mRNA-1
chr3_2 CDS 74669202 74669270 74669202 ID=Msa0424470-mRNA-1:cds;Parent=Msa0424470-mRNA-1
chr3_2 CDS 74670479 74670541 74670479 ID=Msa0424470-mRNA-1:cds;Parent=Msa0424470-mRNA-1
chr3_2 CDS 74670655 74670740 74670655 ID=Msa0424470-mRNA-1:cds;Parent=Msa0424470-mRNA-1
chr3_2 CDS 74670837 74670918 74670837 ID=Msa0424470-mRNA-1:cds;Parent=Msa0424470-mRNA-1
chr3_2 three_prime_UTR 74670919 74671401 74670919 ID=Msa0424470-mRNA-1:three_prime_utr;Parent=Msa0424470-mRNA-1
Gene Sequence

>Msa0424470

ATGGCACTAAGCCTAAGAGTGACTTCTGTTTGGTCACCATTTGTTCAGTTAGGTTCTACTGCCTCTTCTGGATTCTCACTCTCTCAACCATGCTCTGTTTCCAAACCGGGTTTTCATCTCAAACTCAATACTACAAGAAAGTACTCATACCCAACAAGGCTTCTTATTAAAGCTGCTAGAATTGAGTCCAAAGGTGTCACCTTGGGTTTCAGAGCCCCTCAATTTCAGCTTTCAGAGCCTCTGACTGGAAAGGTTTGGACATTGGAAGATTTTGAGGCTCATCCAGCTCTATTGGATGGACCAGAATTGATGGCAGAAGATGCTAAATTGTCTGGATATCCTTTTCCATACCTATATGATGAGTCACAGGATGTTGCACGGGATTTTGGAGCAGTTTGTACACCAGAATTTTACCTTTTTAAAAAGGATGGTCGAAGGCCGTTTGAGCTGGTTTACCACGGTCAGTTTGATGATTCAAGGCCAAGTAATAATAACATACCAGTAACTGGAAGAGACTTGAGCTTGGCAATAGATCGTGTTCTGAGTGGCCAGCCGGTACCATCAGAGCAAAAACCTAGGTACTTTTACATTTAA

Protein sequence

>Msa0424470

MALSLRVTSVWSPFVQLGSTASSGFSLSQPCSVSKPGFHLKLNTTRKYSYPTRLLIKAARIESKGVTLGFRAPQFQLSEPLTGKVWTLEDFEAHPALLDGPELMAEDAKLSGYPFPYLYDESQDVARDFGAVCTPEFYLFKKDGRRPFELVYHGQFDDSRPSNNNIPVTGRDLSLAIDRVLSGQPVPSEQKPRYFYI*