AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0368190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0368190 MtrunA17_Chr3g0111011 98.148 162 3 0 1 162 103 264 1.89e-115 327
Msa0368190 MtrunA17_Chr1g0212841 58.642 162 67 0 1 162 51 212 1.58e-68 206
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0368190 AT5G16710.1 75.309 162 40 0 1 162 97 258 7.66e-92 268
Msa0368190 AT1G75270.1 63.804 163 58 1 1 162 51 213 5.39e-72 216
Msa0368190 AT1G19570.1 57.143 161 68 1 1 160 51 211 1.41e-62 192
Msa0368190 AT1G19550.1 46.875 160 62 1 1 160 15 151 3.07e-46 148

Find 37 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATCTTCTCTACATTTAT+TGG 0.132703 3_1:-64527440 Msa0368190:CDS
GCCTGTTCTGTTCCATCATT+GGG 0.317203 3_1:+64527398 None:intergenic
CTTTCCATCAAAATTTATTA+CGG 0.320003 3_1:+64528122 None:intergenic
TGCCTGTTCTGTTCCATCAT+TGG 0.329262 3_1:+64527397 None:intergenic
CTTTGGGACATTATAAGAAA+TGG 0.339739 3_1:-64526720 Msa0368190:CDS
TATCATCAACCCTCTACTTT+AGG 0.351222 3_1:+64525863 None:intergenic
TACCATTTGGAGATTGCTTT+GGG 0.358598 3_1:-64526736 Msa0368190:CDS
TACCTTCAGGACTGATTTCA+AGG 0.389717 3_1:+64528151 None:intergenic
TTTCCATCAAAATTTATTAC+GGG 0.394965 3_1:+64528123 None:intergenic
ATACCATTTGGAGATTGCTT+TGG 0.401508 3_1:-64526737 Msa0368190:CDS
TTCCTTGAGGTAATCATTGA+AGG 0.431943 3_1:+64527355 None:intergenic
ATAGCTTTGGTCCTAGTGAT+AGG 0.433953 3_1:+64526758 None:intergenic
ATTACGGGAACTTTACCTTC+AGG 0.438595 3_1:+64528138 None:intergenic
TCCCAATGATGGAACAGAAC+AGG 0.440171 3_1:-64527399 Msa0368190:CDS
TCAGGTGGTGTCACCAATGG+TGG 0.440607 3_1:+64528045 None:intergenic
ATCTCCAAATGGTATAGCTT+TGG 0.443085 3_1:+64526745 None:intergenic
AGGACCAAAGCTATACCATT+TGG 0.449238 3_1:-64526749 Msa0368190:CDS
GGTGTCACCAATGGTGGGCT+AGG 0.458979 3_1:+64528051 None:intergenic
ATTGGTGACACCACCTGAAA+AGG 0.468553 3_1:-64528040 Msa0368190:CDS
ATGTGTTTCCCATTGACAAA+AGG 0.492553 3_1:+64526793 None:intergenic
CAGCCGGAGGATGTCGTTGA+AGG 0.511313 3_1:-64525893 Msa0368190:CDS
AAGAGCAAAGATCCCAATGA+TGG 0.512786 3_1:-64527410 Msa0368190:CDS
GTCCCAAAGCAATCTCCAAA+TGG 0.525825 3_1:+64526734 None:intergenic
CTTCAAGTAAGACTTCAAAA+AGG 0.533977 3_1:+64526678 None:intergenic
AGATTTAATCACACAAACAT+TGG 0.534999 3_1:-64528085 Msa0368190:CDS
CGGAGGATGTCGTTGAAGGT+TGG 0.539554 3_1:-64525889 Msa0368190:CDS
CAGGTGGTGTCACCAATGGT+GGG 0.551034 3_1:+64528046 None:intergenic
CTCCTTCAATGATTACCTCA+AGG 0.552514 3_1:-64527357 Msa0368190:CDS
CATTAACACACGTGCACAGC+CGG 0.557161 3_1:-64525909 Msa0368190:CDS
GAAGTATCCTAGCCCACCAT+TGG 0.558980 3_1:-64528058 Msa0368190:CDS
CAACCTTCAACGACATCCTC+CGG 0.559639 3_1:+64525890 None:intergenic
TTCCTTGAAATCAGTCCTGA+AGG 0.565919 3_1:-64528153 Msa0368190:CDS
AGGTTGGCGTCCTAAAGTAG+AGG 0.619348 3_1:-64525873 Msa0368190:CDS
GGTTGGCGTCCTAAAGTAGA+GGG 0.649275 3_1:-64525872 Msa0368190:CDS
TCTGCGGCTGACCTATCACT+AGG 0.671764 3_1:-64526769 Msa0368190:CDS
TAACACACGTGCACAGCCGG+AGG 0.694276 3_1:-64525906 Msa0368190:CDS
CAATGGGAAACACATATCTG+CGG 0.696422 3_1:-64526785 Msa0368190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTGAAAAATACA+TGG - chr3_1:64526097-64526116 Msa0368190:intron 10.0%
!!! TTTTTAATTTTAATACATTC+AGG - chr3_1:64526431-64526450 Msa0368190:intron 10.0%
!!! TTTTAATTTTAATACATTCA+GGG - chr3_1:64526432-64526451 Msa0368190:intron 10.0%
!! ATGTAAATATAAAAATAAAG+AGG + chr3_1:64526502-64526521 None:intergenic 10.0%
!!! TCTTTATTTTTATATTTACA+TGG - chr3_1:64526501-64526520 Msa0368190:intron 10.0%
!!! TTTTTTTTTTGAAAAATACA+TGG - chr3_1:64526097-64526116 Msa0368190:intron 10.0%
!!! TTTTTAATTTTAATACATTC+AGG - chr3_1:64526431-64526450 Msa0368190:intron 10.0%
!!! TTTTAATTTTAATACATTCA+GGG - chr3_1:64526432-64526451 Msa0368190:intron 10.0%
!! ATGTAAATATAAAAATAAAG+AGG + chr3_1:64526502-64526521 None:intergenic 10.0%
!!! TCTTTATTTTTATATTTACA+TGG - chr3_1:64526501-64526520 Msa0368190:intron 10.0%
!!! TTGTAATTTTGATATATTCA+AGG + chr3_1:64526269-64526288 None:intergenic 15.0%
!!! TTATAAACTTTCAGTATTTT+AGG - chr3_1:64526742-64526761 Msa0368190:CDS 15.0%
!!! TTATATGAATATAAGTGTTT+TGG + chr3_1:64527099-64527118 None:intergenic 15.0%
!! TTATATTCATATAACTTTGA+GGG - chr3_1:64527105-64527124 Msa0368190:intron 15.0%
!! TAAAAAATTTATACGAAAGA+AGG + chr3_1:64527181-64527200 None:intergenic 15.0%
!! TGAATAGTTTATTAAATTTG+TGG - chr3_1:64527496-64527515 Msa0368190:intron 15.0%
!! CATTATTATTCATTTACATT+CGG + chr3_1:64527874-64527893 None:intergenic 15.0%
!! TTGTATTTAATAATCCTTAA+TGG - chr3_1:64528009-64528028 Msa0368190:intron 15.0%
!! CTGTAATATAATATAAACAA+AGG + chr3_1:64528041-64528060 None:intergenic 15.0%
!!! TTGTAATTTTGATATATTCA+AGG + chr3_1:64526269-64526288 None:intergenic 15.0%
!!! TTATAAACTTTCAGTATTTT+AGG - chr3_1:64526742-64526761 Msa0368190:CDS 15.0%
!!! TTATATGAATATAAGTGTTT+TGG + chr3_1:64527099-64527118 None:intergenic 15.0%
!! TTATATTCATATAACTTTGA+GGG - chr3_1:64527105-64527124 Msa0368190:intron 15.0%
!! TAAAAAATTTATACGAAAGA+AGG + chr3_1:64527181-64527200 None:intergenic 15.0%
!! TGAATAGTTTATTAAATTTG+TGG - chr3_1:64527496-64527515 Msa0368190:intron 15.0%
!! CATTATTATTCATTTACATT+CGG + chr3_1:64527874-64527893 None:intergenic 15.0%
!! TTGTATTTAATAATCCTTAA+TGG - chr3_1:64528009-64528028 Msa0368190:intron 15.0%
!! CTGTAATATAATATAAACAA+AGG + chr3_1:64528041-64528060 None:intergenic 15.0%
!! TTTCCATCAAAATTTATTAC+GGG + chr3_1:64525904-64525923 None:intergenic 20.0%
!! CTTTCCATCAAAATTTATTA+CGG + chr3_1:64525905-64525924 None:intergenic 20.0%
!!! TAATAAATTTTGATGGAAAG+TGG - chr3_1:64525905-64525924 Msa0368190:CDS 20.0%
!!! AATAAATTTTGATGGAAAGT+GGG - chr3_1:64525906-64525925 Msa0368190:CDS 20.0%
!! AAAATAAAGAGGAATAAAGA+TGG + chr3_1:64526491-64526510 None:intergenic 20.0%
!! AGATGTTACAAAACATTAAA+CGG - chr3_1:64526877-64526896 Msa0368190:intron 20.0%
!! CAATTATTCATAAACTTTAC+AGG + chr3_1:64526994-64527013 None:intergenic 20.0%
!! CTGTAAAGTTTATGAATAAT+TGG - chr3_1:64526992-64527011 Msa0368190:intron 20.0%
!! CTTATATTCATATAACTTTG+AGG - chr3_1:64527104-64527123 Msa0368190:intron 20.0%
!! AGTGAAAATGATTTATCAAT+AGG - chr3_1:64527564-64527583 Msa0368190:intron 20.0%
!! GTGAAAATGATTTATCAATA+GGG - chr3_1:64527565-64527584 Msa0368190:intron 20.0%
!! TTTCCATCAAAATTTATTAC+GGG + chr3_1:64525904-64525923 None:intergenic 20.0%
!! CTTTCCATCAAAATTTATTA+CGG + chr3_1:64525905-64525924 None:intergenic 20.0%
!!! TAATAAATTTTGATGGAAAG+TGG - chr3_1:64525905-64525924 Msa0368190:CDS 20.0%
!!! AATAAATTTTGATGGAAAGT+GGG - chr3_1:64525906-64525925 Msa0368190:CDS 20.0%
!! AAAATAAAGAGGAATAAAGA+TGG + chr3_1:64526491-64526510 None:intergenic 20.0%
!! AGATGTTACAAAACATTAAA+CGG - chr3_1:64526877-64526896 Msa0368190:intron 20.0%
!! CAATTATTCATAAACTTTAC+AGG + chr3_1:64526994-64527013 None:intergenic 20.0%
!! CTGTAAAGTTTATGAATAAT+TGG - chr3_1:64526992-64527011 Msa0368190:intron 20.0%
!! CTTATATTCATATAACTTTG+AGG - chr3_1:64527104-64527123 Msa0368190:intron 20.0%
!! AGTGAAAATGATTTATCAAT+AGG - chr3_1:64527564-64527583 Msa0368190:intron 20.0%
!! GTGAAAATGATTTATCAATA+GGG - chr3_1:64527565-64527584 Msa0368190:intron 20.0%
! AGATTTAATCACACAAACAT+TGG - chr3_1:64525939-64525958 Msa0368190:intron 25.0%
! TTATACATTTCCTTGTCATT+TGG - chr3_1:64526027-64526046 Msa0368190:intron 25.0%
!! TTCTTTCGTTAGCAATTTTA+TGG + chr3_1:64526394-64526413 None:intergenic 25.0%
! AAGATCTTCTCTACATTTAT+TGG - chr3_1:64526584-64526603 Msa0368190:intron 25.0%
! TTTGTAACATCTTATGTAGA+TGG + chr3_1:64526869-64526888 None:intergenic 25.0%
! GATGTTACAAAACATTAAAC+GGG - chr3_1:64526878-64526897 Msa0368190:intron 25.0%
! ATGTTACAAAACATTAAACG+GGG - chr3_1:64526879-64526898 Msa0368190:intron 25.0%
! AACAGTAATGTATATCAAGA+GGG + chr3_1:64526954-64526973 None:intergenic 25.0%
! TAACAGTAATGTATATCAAG+AGG + chr3_1:64526955-64526974 None:intergenic 25.0%
!!! GCTCTAAATTCAAATGTTTT+CGG - chr3_1:64527614-64527633 Msa0368190:intron 25.0%
! CTTTGAATATACGGAAAAAT+TGG + chr3_1:64527663-64527682 None:intergenic 25.0%
!! ATTTTTCCGTATATTCAAAG+AGG - chr3_1:64527663-64527682 Msa0368190:intron 25.0%
!!! CATTTTGAGTATTGATGAAA+AGG + chr3_1:64527721-64527740 None:intergenic 25.0%
!! TACTCAAAATGTTTTCAGTA+AGG - chr3_1:64527730-64527749 Msa0368190:intron 25.0%
!! ACTCAAAATGTTTTCAGTAA+GGG - chr3_1:64527731-64527750 Msa0368190:intron 25.0%
!! CAATTGGTAATTGTACAAAA+GGG + chr3_1:64527799-64527818 None:intergenic 25.0%
! AGATTTAATCACACAAACAT+TGG - chr3_1:64525939-64525958 Msa0368190:intron 25.0%
! TTATACATTTCCTTGTCATT+TGG - chr3_1:64526027-64526046 Msa0368190:intron 25.0%
!! TTCTTTCGTTAGCAATTTTA+TGG + chr3_1:64526394-64526413 None:intergenic 25.0%
! AAGATCTTCTCTACATTTAT+TGG - chr3_1:64526584-64526603 Msa0368190:intron 25.0%
! TTTGTAACATCTTATGTAGA+TGG + chr3_1:64526869-64526888 None:intergenic 25.0%
! GATGTTACAAAACATTAAAC+GGG - chr3_1:64526878-64526897 Msa0368190:intron 25.0%
! ATGTTACAAAACATTAAACG+GGG - chr3_1:64526879-64526898 Msa0368190:intron 25.0%
! AACAGTAATGTATATCAAGA+GGG + chr3_1:64526954-64526973 None:intergenic 25.0%
! TAACAGTAATGTATATCAAG+AGG + chr3_1:64526955-64526974 None:intergenic 25.0%
!!! GCTCTAAATTCAAATGTTTT+CGG - chr3_1:64527614-64527633 Msa0368190:intron 25.0%
! CTTTGAATATACGGAAAAAT+TGG + chr3_1:64527663-64527682 None:intergenic 25.0%
!! ATTTTTCCGTATATTCAAAG+AGG - chr3_1:64527663-64527682 Msa0368190:intron 25.0%
!!! CATTTTGAGTATTGATGAAA+AGG + chr3_1:64527721-64527740 None:intergenic 25.0%
!! TACTCAAAATGTTTTCAGTA+AGG - chr3_1:64527730-64527749 Msa0368190:intron 25.0%
!! ACTCAAAATGTTTTCAGTAA+GGG - chr3_1:64527731-64527750 Msa0368190:intron 25.0%
!! CAATTGGTAATTGTACAAAA+GGG + chr3_1:64527799-64527818 None:intergenic 25.0%
! GTTCCCGTAATAAATTTTGA+TGG - chr3_1:64525898-64525917 Msa0368190:CDS 30.0%
CAAATTATCTCCAAATGACA+AGG + chr3_1:64526040-64526059 None:intergenic 30.0%
! CTTGTCATTTGGAGATAATT+TGG - chr3_1:64526038-64526057 Msa0368190:intron 30.0%
GTAGTAGGGAAAAACATAAA+GGG + chr3_1:64526178-64526197 None:intergenic 30.0%
AGTAGTAGGGAAAAACATAA+AGG + chr3_1:64526179-64526198 None:intergenic 30.0%
! CATGTGATTTTGTCTATAGT+GGG - chr3_1:64526558-64526577 Msa0368190:intron 30.0%
! AAAGTCATACATTTTCCTTG+AGG + chr3_1:64526685-64526704 None:intergenic 30.0%
AAGATTGCAAACAAATAGCA+GGG + chr3_1:64526721-64526740 None:intergenic 30.0%
TTATGTAGATGGAGTATAAG+AGG + chr3_1:64526858-64526877 None:intergenic 30.0%
ATAGTCAGCAAATAAATAGC+TGG - chr3_1:64526927-64526946 Msa0368190:intron 30.0%
!! CTTTGGGACATTATAAGAAA+TGG - chr3_1:64527304-64527323 Msa0368190:intron 30.0%
CTTCAAGTAAGACTTCAAAA+AGG + chr3_1:64527349-64527368 None:intergenic 30.0%
!!! CTTTTTGAAGTCTTACTTGA+AGG - chr3_1:64527347-64527366 Msa0368190:intron 30.0%
AATATGATAGATGTTGAGTG+AGG + chr3_1:64527391-64527410 None:intergenic 30.0%
ATGAAACTGCATCATAAGTA+CGG + chr3_1:64527471-64527490 None:intergenic 30.0%
! CTCAAAATGTTTTCAGTAAG+GGG - chr3_1:64527732-64527751 Msa0368190:intron 30.0%
TCGTAAGGAAAAAAAACATG+TGG + chr3_1:64527761-64527780 None:intergenic 30.0%
! GCAATTGGTAATTGTACAAA+AGG + chr3_1:64527800-64527819 None:intergenic 30.0%
GTACAATTACCAATTGCTAA+AGG - chr3_1:64527803-64527822 Msa0368190:intron 30.0%
TGCTTCTTAACAATCACAAA+CGG - chr3_1:64527828-64527847 Msa0368190:intron 30.0%
AACAAAGGAAAACTCCATTA+AGG + chr3_1:64528026-64528045 None:intergenic 30.0%
! GTTCCCGTAATAAATTTTGA+TGG - chr3_1:64525898-64525917 Msa0368190:CDS 30.0%
CAAATTATCTCCAAATGACA+AGG + chr3_1:64526040-64526059 None:intergenic 30.0%
! CTTGTCATTTGGAGATAATT+TGG - chr3_1:64526038-64526057 Msa0368190:intron 30.0%
GTAGTAGGGAAAAACATAAA+GGG + chr3_1:64526178-64526197 None:intergenic 30.0%
AGTAGTAGGGAAAAACATAA+AGG + chr3_1:64526179-64526198 None:intergenic 30.0%
! CATGTGATTTTGTCTATAGT+GGG - chr3_1:64526558-64526577 Msa0368190:intron 30.0%
! AAAGTCATACATTTTCCTTG+AGG + chr3_1:64526685-64526704 None:intergenic 30.0%
AAGATTGCAAACAAATAGCA+GGG + chr3_1:64526721-64526740 None:intergenic 30.0%
TTATGTAGATGGAGTATAAG+AGG + chr3_1:64526858-64526877 None:intergenic 30.0%
ATAGTCAGCAAATAAATAGC+TGG - chr3_1:64526927-64526946 Msa0368190:intron 30.0%
!! CTTTGGGACATTATAAGAAA+TGG - chr3_1:64527304-64527323 Msa0368190:intron 30.0%
CTTCAAGTAAGACTTCAAAA+AGG + chr3_1:64527349-64527368 None:intergenic 30.0%
!!! CTTTTTGAAGTCTTACTTGA+AGG - chr3_1:64527347-64527366 Msa0368190:intron 30.0%
AATATGATAGATGTTGAGTG+AGG + chr3_1:64527391-64527410 None:intergenic 30.0%
ATGAAACTGCATCATAAGTA+CGG + chr3_1:64527471-64527490 None:intergenic 30.0%
! CTCAAAATGTTTTCAGTAAG+GGG - chr3_1:64527732-64527751 Msa0368190:intron 30.0%
TCGTAAGGAAAAAAAACATG+TGG + chr3_1:64527761-64527780 None:intergenic 30.0%
! GCAATTGGTAATTGTACAAA+AGG + chr3_1:64527800-64527819 None:intergenic 30.0%
GTACAATTACCAATTGCTAA+AGG - chr3_1:64527803-64527822 Msa0368190:intron 30.0%
TGCTTCTTAACAATCACAAA+CGG - chr3_1:64527828-64527847 Msa0368190:intron 30.0%
AACAAAGGAAAACTCCATTA+AGG + chr3_1:64528026-64528045 None:intergenic 30.0%
AAATCTGACATGCAGTAGTA+GGG + chr3_1:64526192-64526211 None:intergenic 35.0%
AAAATCTGACATGCAGTAGT+AGG + chr3_1:64526193-64526212 None:intergenic 35.0%
GTGACATCTGATAGATTCAA+AGG + chr3_1:64526240-64526259 None:intergenic 35.0%
! TCCATGAATGCATTTTTCCT+TGG - chr3_1:64526294-64526313 Msa0368190:intron 35.0%
ACCAAGGAAAAATGCATTCA+TGG + chr3_1:64526298-64526317 None:intergenic 35.0%
! GCATTTTTCCTTGGTCAATT+TGG - chr3_1:64526303-64526322 Msa0368190:intron 35.0%
TTCAAGAACCAAATTGACCA+AGG + chr3_1:64526314-64526333 None:intergenic 35.0%
! GCATGTGATTTTGTCTATAG+TGG - chr3_1:64526557-64526576 Msa0368190:intron 35.0%
TTCCTTGAGGTAATCATTGA+AGG + chr3_1:64526672-64526691 None:intergenic 35.0%
CAAGATTGCAAACAAATAGC+AGG + chr3_1:64526722-64526741 None:intergenic 35.0%
! CTACATCTTTTCCTGCATTA+TGG - chr3_1:64526785-64526804 Msa0368190:CDS 35.0%
CCACTACAAGAAAGGTTATA+GGG + chr3_1:64526818-64526837 None:intergenic 35.0%
CCTATAACCTTTCTTGTAGT+GGG - chr3_1:64526816-64526835 Msa0368190:intron 35.0%
TATAAGAGGAACCAGTTAAG+CGG + chr3_1:64526844-64526863 None:intergenic 35.0%
! TTTTCTTGTCTCGATCTTTC+TGG - chr3_1:64527133-64527152 Msa0368190:intron 35.0%
TGTGAAGAAAAAATTCGCAC+AGG + chr3_1:64527205-64527224 None:intergenic 35.0%
!!! TGCGAATTTTTTCTTCACAC+AGG - chr3_1:64527206-64527225 Msa0368190:intron 35.0%
!!! GCGAATTTTTTCTTCACACA+GGG - chr3_1:64527207-64527226 Msa0368190:intron 35.0%
ATGTGTTTCCCATTGACAAA+AGG + chr3_1:64527234-64527253 None:intergenic 35.0%
ATCTCCAAATGGTATAGCTT+TGG + chr3_1:64527282-64527301 None:intergenic 35.0%
ATACCATTTGGAGATTGCTT+TGG - chr3_1:64527287-64527306 Msa0368190:intron 35.0%
TACCATTTGGAGATTGCTTT+GGG - chr3_1:64527288-64527307 Msa0368190:intron 35.0%
TTCAAAAAGGTCAGTGAATC+AGG + chr3_1:64527336-64527355 None:intergenic 35.0%
TGAAACTGCATCATAAGTAC+GGG + chr3_1:64527470-64527489 None:intergenic 35.0%
TCAGAAGAAACTCCAAATTC+AGG + chr3_1:64527594-64527613 None:intergenic 35.0%
CCAAAGCCTCTTTGAATATA+CGG + chr3_1:64527672-64527691 None:intergenic 35.0%
! CTTGTGTCATTCTATTCGTA+AGG + chr3_1:64527776-64527795 None:intergenic 35.0%
GACAACAATTGGTGAAAAAG+AGG + chr3_1:64527939-64527958 None:intergenic 35.0%
TCTAACAATGCTGAACTTAC+AGG - chr3_1:64528070-64528089 Msa0368190:CDS 35.0%
! ACTTACAGGAAATTTTCTCG+AGG - chr3_1:64528084-64528103 Msa0368190:CDS 35.0%
! CTTACAGGAAATTTTCTCGA+GGG - chr3_1:64528085-64528104 Msa0368190:CDS 35.0%
AAATCTGACATGCAGTAGTA+GGG + chr3_1:64526192-64526211 None:intergenic 35.0%
AAAATCTGACATGCAGTAGT+AGG + chr3_1:64526193-64526212 None:intergenic 35.0%
GTGACATCTGATAGATTCAA+AGG + chr3_1:64526240-64526259 None:intergenic 35.0%
! TCCATGAATGCATTTTTCCT+TGG - chr3_1:64526294-64526313 Msa0368190:intron 35.0%
ACCAAGGAAAAATGCATTCA+TGG + chr3_1:64526298-64526317 None:intergenic 35.0%
! GCATTTTTCCTTGGTCAATT+TGG - chr3_1:64526303-64526322 Msa0368190:intron 35.0%
TTCAAGAACCAAATTGACCA+AGG + chr3_1:64526314-64526333 None:intergenic 35.0%
! GCATGTGATTTTGTCTATAG+TGG - chr3_1:64526557-64526576 Msa0368190:intron 35.0%
TTCCTTGAGGTAATCATTGA+AGG + chr3_1:64526672-64526691 None:intergenic 35.0%
CAAGATTGCAAACAAATAGC+AGG + chr3_1:64526722-64526741 None:intergenic 35.0%
! CTACATCTTTTCCTGCATTA+TGG - chr3_1:64526785-64526804 Msa0368190:CDS 35.0%
CCACTACAAGAAAGGTTATA+GGG + chr3_1:64526818-64526837 None:intergenic 35.0%
CCTATAACCTTTCTTGTAGT+GGG - chr3_1:64526816-64526835 Msa0368190:intron 35.0%
TATAAGAGGAACCAGTTAAG+CGG + chr3_1:64526844-64526863 None:intergenic 35.0%
! TTTTCTTGTCTCGATCTTTC+TGG - chr3_1:64527133-64527152 Msa0368190:intron 35.0%
TGTGAAGAAAAAATTCGCAC+AGG + chr3_1:64527205-64527224 None:intergenic 35.0%
!!! TGCGAATTTTTTCTTCACAC+AGG - chr3_1:64527206-64527225 Msa0368190:intron 35.0%
!!! GCGAATTTTTTCTTCACACA+GGG - chr3_1:64527207-64527226 Msa0368190:intron 35.0%
ATGTGTTTCCCATTGACAAA+AGG + chr3_1:64527234-64527253 None:intergenic 35.0%
ATCTCCAAATGGTATAGCTT+TGG + chr3_1:64527282-64527301 None:intergenic 35.0%
ATACCATTTGGAGATTGCTT+TGG - chr3_1:64527287-64527306 Msa0368190:intron 35.0%
TACCATTTGGAGATTGCTTT+GGG - chr3_1:64527288-64527307 Msa0368190:intron 35.0%
TTCAAAAAGGTCAGTGAATC+AGG + chr3_1:64527336-64527355 None:intergenic 35.0%
TGAAACTGCATCATAAGTAC+GGG + chr3_1:64527470-64527489 None:intergenic 35.0%
TCAGAAGAAACTCCAAATTC+AGG + chr3_1:64527594-64527613 None:intergenic 35.0%
CCAAAGCCTCTTTGAATATA+CGG + chr3_1:64527672-64527691 None:intergenic 35.0%
! CTTGTGTCATTCTATTCGTA+AGG + chr3_1:64527776-64527795 None:intergenic 35.0%
GACAACAATTGGTGAAAAAG+AGG + chr3_1:64527939-64527958 None:intergenic 35.0%
TCTAACAATGCTGAACTTAC+AGG - chr3_1:64528070-64528089 Msa0368190:CDS 35.0%
! ACTTACAGGAAATTTTCTCG+AGG - chr3_1:64528084-64528103 Msa0368190:CDS 35.0%
! CTTACAGGAAATTTTCTCGA+GGG - chr3_1:64528085-64528104 Msa0368190:CDS 35.0%
TTCCTTGAAATCAGTCCTGA+AGG - chr3_1:64525871-64525890 Msa0368190:CDS 40.0%
! TACCTTCAGGACTGATTTCA+AGG + chr3_1:64525876-64525895 None:intergenic 40.0%
ATTACGGGAACTTTACCTTC+AGG + chr3_1:64525889-64525908 None:intergenic 40.0%
TTTGAGAACCAGACTGACTA+AGG + chr3_1:64526346-64526365 None:intergenic 40.0%
GCTAACGAAAGAAACTCACA+TGG - chr3_1:64526401-64526420 Msa0368190:intron 40.0%
TGACACCGTATGACACAATT+AGG - chr3_1:64526463-64526482 Msa0368190:intron 40.0%
GACACCGTATGACACAATTA+GGG - chr3_1:64526464-64526483 Msa0368190:intron 40.0%
TGGTCCCTAATTGTGTCATA+CGG + chr3_1:64526471-64526490 None:intergenic 40.0%
AAGAGCAAAGATCCCAATGA+TGG - chr3_1:64526614-64526633 Msa0368190:intron 40.0%
CTCCTTCAATGATTACCTCA+AGG - chr3_1:64526667-64526686 Msa0368190:intron 40.0%
! CTTTTCCTGCATTATGGTCA+TGG - chr3_1:64526791-64526810 Msa0368190:CDS 40.0%
CCCTATAACCTTTCTTGTAG+TGG - chr3_1:64526815-64526834 Msa0368190:intron 40.0%
CCCACTACAAGAAAGGTTAT+AGG + chr3_1:64526819-64526838 None:intergenic 40.0%
CAATGGGAAACACATATCTG+CGG - chr3_1:64527239-64527258 Msa0368190:intron 40.0%
!! ATAGCTTTGGTCCTAGTGAT+AGG + chr3_1:64527269-64527288 None:intergenic 40.0%
AGGACCAAAGCTATACCATT+TGG - chr3_1:64527275-64527294 Msa0368190:intron 40.0%
ATGATAGATGTTGAGTGAGG+AGG + chr3_1:64527388-64527407 None:intergenic 40.0%
TGTCCATGCTTAAAGATCAC+AGG - chr3_1:64527535-64527554 Msa0368190:intron 40.0%
TAGCCTGTGATCTTTAAGCA+TGG + chr3_1:64527541-64527560 None:intergenic 40.0%
TCAATAGGGAGACCTGAATT+TGG - chr3_1:64527579-64527598 Msa0368190:intron 40.0%
!! AAATTGGTTTGCAAAGCCCA+AGG + chr3_1:64527647-64527666 None:intergenic 40.0%
CCGTATATTCAAAGAGGCTT+TGG - chr3_1:64527669-64527688 Msa0368190:intron 40.0%
!! AGAAGCACTCCTTTAGCAAT+TGG + chr3_1:64527815-64527834 None:intergenic 40.0%
GACAACAAGCTGACAACAAT+TGG + chr3_1:64527950-64527969 None:intergenic 40.0%
ACAGATCATCTAGGGATTGT+GGG + chr3_1:64527972-64527991 None:intergenic 40.0%
AACAGATCATCTAGGGATTG+TGG + chr3_1:64527973-64527992 None:intergenic 40.0%
CACAGACAACAGATCATCTA+GGG + chr3_1:64527980-64527999 None:intergenic 40.0%
ACACAGACAACAGATCATCT+AGG + chr3_1:64527981-64528000 None:intergenic 40.0%
TTCCTTGAAATCAGTCCTGA+AGG - chr3_1:64525871-64525890 Msa0368190:CDS 40.0%
! TACCTTCAGGACTGATTTCA+AGG + chr3_1:64525876-64525895 None:intergenic 40.0%
ATTACGGGAACTTTACCTTC+AGG + chr3_1:64525889-64525908 None:intergenic 40.0%
TTTGAGAACCAGACTGACTA+AGG + chr3_1:64526346-64526365 None:intergenic 40.0%
GCTAACGAAAGAAACTCACA+TGG - chr3_1:64526401-64526420 Msa0368190:intron 40.0%
TGACACCGTATGACACAATT+AGG - chr3_1:64526463-64526482 Msa0368190:intron 40.0%
GACACCGTATGACACAATTA+GGG - chr3_1:64526464-64526483 Msa0368190:intron 40.0%
TGGTCCCTAATTGTGTCATA+CGG + chr3_1:64526471-64526490 None:intergenic 40.0%
AAGAGCAAAGATCCCAATGA+TGG - chr3_1:64526614-64526633 Msa0368190:intron 40.0%
CTCCTTCAATGATTACCTCA+AGG - chr3_1:64526667-64526686 Msa0368190:intron 40.0%
! CTTTTCCTGCATTATGGTCA+TGG - chr3_1:64526791-64526810 Msa0368190:CDS 40.0%
CCCTATAACCTTTCTTGTAG+TGG - chr3_1:64526815-64526834 Msa0368190:intron 40.0%
CCCACTACAAGAAAGGTTAT+AGG + chr3_1:64526819-64526838 None:intergenic 40.0%
CAATGGGAAACACATATCTG+CGG - chr3_1:64527239-64527258 Msa0368190:intron 40.0%
!! ATAGCTTTGGTCCTAGTGAT+AGG + chr3_1:64527269-64527288 None:intergenic 40.0%
AGGACCAAAGCTATACCATT+TGG - chr3_1:64527275-64527294 Msa0368190:intron 40.0%
ATGATAGATGTTGAGTGAGG+AGG + chr3_1:64527388-64527407 None:intergenic 40.0%
TGTCCATGCTTAAAGATCAC+AGG - chr3_1:64527535-64527554 Msa0368190:intron 40.0%
TAGCCTGTGATCTTTAAGCA+TGG + chr3_1:64527541-64527560 None:intergenic 40.0%
TCAATAGGGAGACCTGAATT+TGG - chr3_1:64527579-64527598 Msa0368190:intron 40.0%
!! AAATTGGTTTGCAAAGCCCA+AGG + chr3_1:64527647-64527666 None:intergenic 40.0%
CCGTATATTCAAAGAGGCTT+TGG - chr3_1:64527669-64527688 Msa0368190:intron 40.0%
!! AGAAGCACTCCTTTAGCAAT+TGG + chr3_1:64527815-64527834 None:intergenic 40.0%
GACAACAAGCTGACAACAAT+TGG + chr3_1:64527950-64527969 None:intergenic 40.0%
ACAGATCATCTAGGGATTGT+GGG + chr3_1:64527972-64527991 None:intergenic 40.0%
AACAGATCATCTAGGGATTG+TGG + chr3_1:64527973-64527992 None:intergenic 40.0%
CACAGACAACAGATCATCTA+GGG + chr3_1:64527980-64527999 None:intergenic 40.0%
ACACAGACAACAGATCATCT+AGG + chr3_1:64527981-64528000 None:intergenic 40.0%
!!! TTTTCAGGTGGTGTCACCAA+TGG + chr3_1:64525985-64526004 None:intergenic 45.0%
! ATTGGTGACACCACCTGAAA+AGG - chr3_1:64525984-64526003 Msa0368190:intron 45.0%
! TCCCAATGATGGAACAGAAC+AGG - chr3_1:64526625-64526644 Msa0368190:intron 45.0%
GCCTGTTCTGTTCCATCATT+GGG + chr3_1:64526629-64526648 None:intergenic 45.0%
TGCCTGTTCTGTTCCATCAT+TGG + chr3_1:64526630-64526649 None:intergenic 45.0%
TGCAAACAAATAGCAGGGAG+AGG + chr3_1:64526716-64526735 None:intergenic 45.0%
ATGCAGGAAAAGATGTAGCC+AGG + chr3_1:64526783-64526802 None:intergenic 45.0%
! ACACAGGGTCCTTTTGTCAA+TGG - chr3_1:64527222-64527241 Msa0368190:intron 45.0%
! CACAGGGTCCTTTTGTCAAT+GGG - chr3_1:64527223-64527242 Msa0368190:intron 45.0%
GTCCCAAAGCAATCTCCAAA+TGG + chr3_1:64527293-64527312 None:intergenic 45.0%
! ATGTTTTCGGTCATGTGCCT+TGG - chr3_1:64527627-64527646 Msa0368190:intron 45.0%
! TGTTTTCGGTCATGTGCCTT+GGG - chr3_1:64527628-64527647 Msa0368190:intron 45.0%
!! TTCAAAGAGGCTTTGGCTCT+AGG - chr3_1:64527676-64527695 Msa0368190:intron 45.0%
!!! TTTTCAGGTGGTGTCACCAA+TGG + chr3_1:64525985-64526004 None:intergenic 45.0%
! ATTGGTGACACCACCTGAAA+AGG - chr3_1:64525984-64526003 Msa0368190:intron 45.0%
! TCCCAATGATGGAACAGAAC+AGG - chr3_1:64526625-64526644 Msa0368190:intron 45.0%
GCCTGTTCTGTTCCATCATT+GGG + chr3_1:64526629-64526648 None:intergenic 45.0%
TGCCTGTTCTGTTCCATCAT+TGG + chr3_1:64526630-64526649 None:intergenic 45.0%
TGCAAACAAATAGCAGGGAG+AGG + chr3_1:64526716-64526735 None:intergenic 45.0%
ATGCAGGAAAAGATGTAGCC+AGG + chr3_1:64526783-64526802 None:intergenic 45.0%
! ACACAGGGTCCTTTTGTCAA+TGG - chr3_1:64527222-64527241 Msa0368190:intron 45.0%
! CACAGGGTCCTTTTGTCAAT+GGG - chr3_1:64527223-64527242 Msa0368190:intron 45.0%
GTCCCAAAGCAATCTCCAAA+TGG + chr3_1:64527293-64527312 None:intergenic 45.0%
! ATGTTTTCGGTCATGTGCCT+TGG - chr3_1:64527627-64527646 Msa0368190:intron 45.0%
! TGTTTTCGGTCATGTGCCTT+GGG - chr3_1:64527628-64527647 Msa0368190:intron 45.0%
!! TTCAAAGAGGCTTTGGCTCT+AGG - chr3_1:64527676-64527695 Msa0368190:intron 45.0%
! GAAGTATCCTAGCCCACCAT+TGG - chr3_1:64525966-64525985 Msa0368190:intron 50.0%
!! TACGCTGTAGCCTTTTCAGG+TGG + chr3_1:64525997-64526016 None:intergenic 50.0%
! GCATACGCTGTAGCCTTTTC+AGG + chr3_1:64526000-64526019 None:intergenic 50.0%
AAGGCTACAGCGTATGCTTC+TGG - chr3_1:64526003-64526022 Msa0368190:intron 50.0%
GTATCTCGCCTTAGTCAGTC+TGG - chr3_1:64526335-64526354 Msa0368190:intron 50.0%
AGGTCTCTCAATCTCTGACC+TGG - chr3_1:64526762-64526781 Msa0368190:CDS 50.0%
AGGGTCCATGACCATAATGC+AGG + chr3_1:64526799-64526818 None:intergenic 50.0%
CATTAACACACGTGCACAGC+CGG - chr3_1:64528115-64528134 Msa0368190:CDS 50.0%
CAACCTTCAACGACATCCTC+CGG + chr3_1:64528137-64528156 None:intergenic 50.0%
AGGTTGGCGTCCTAAAGTAG+AGG - chr3_1:64528151-64528170 Msa0368190:CDS 50.0%
GGTTGGCGTCCTAAAGTAGA+GGG - chr3_1:64528152-64528171 Msa0368190:CDS 50.0%
! GAAGTATCCTAGCCCACCAT+TGG - chr3_1:64525966-64525985 Msa0368190:intron 50.0%
!! TACGCTGTAGCCTTTTCAGG+TGG + chr3_1:64525997-64526016 None:intergenic 50.0%
! GCATACGCTGTAGCCTTTTC+AGG + chr3_1:64526000-64526019 None:intergenic 50.0%
AAGGCTACAGCGTATGCTTC+TGG - chr3_1:64526003-64526022 Msa0368190:intron 50.0%
GTATCTCGCCTTAGTCAGTC+TGG - chr3_1:64526335-64526354 Msa0368190:intron 50.0%
AGGTCTCTCAATCTCTGACC+TGG - chr3_1:64526762-64526781 Msa0368190:CDS 50.0%
AGGGTCCATGACCATAATGC+AGG + chr3_1:64526799-64526818 None:intergenic 50.0%
CATTAACACACGTGCACAGC+CGG - chr3_1:64528115-64528134 Msa0368190:CDS 50.0%
CAACCTTCAACGACATCCTC+CGG + chr3_1:64528137-64528156 None:intergenic 50.0%
AGGTTGGCGTCCTAAAGTAG+AGG - chr3_1:64528151-64528170 Msa0368190:CDS 50.0%
GGTTGGCGTCCTAAAGTAGA+GGG - chr3_1:64528152-64528171 Msa0368190:CDS 50.0%
!! CAGGTGGTGTCACCAATGGT+GGG + chr3_1:64525981-64526000 None:intergenic 55.0%
!! TCAGGTGGTGTCACCAATGG+TGG + chr3_1:64525982-64526001 None:intergenic 55.0%
AGCGGTGCCCACTACAAGAA+AGG + chr3_1:64526826-64526845 None:intergenic 55.0%
!! TGTAGTGGGCACCGCTTAAC+TGG - chr3_1:64526830-64526849 Msa0368190:intron 55.0%
TCTGCGGCTGACCTATCACT+AGG - chr3_1:64527255-64527274 Msa0368190:intron 55.0%
CGGAGGATGTCGTTGAAGGT+TGG - chr3_1:64528135-64528154 Msa0368190:CDS 55.0%
!! CAGGTGGTGTCACCAATGGT+GGG + chr3_1:64525981-64526000 None:intergenic 55.0%
!! TCAGGTGGTGTCACCAATGG+TGG + chr3_1:64525982-64526001 None:intergenic 55.0%
AGCGGTGCCCACTACAAGAA+AGG + chr3_1:64526826-64526845 None:intergenic 55.0%
!! TGTAGTGGGCACCGCTTAAC+TGG - chr3_1:64526830-64526849 Msa0368190:intron 55.0%
TCTGCGGCTGACCTATCACT+AGG - chr3_1:64527255-64527274 Msa0368190:intron 55.0%
CGGAGGATGTCGTTGAAGGT+TGG - chr3_1:64528135-64528154 Msa0368190:CDS 55.0%
!! GGTGTCACCAATGGTGGGCT+AGG + chr3_1:64525976-64525995 None:intergenic 60.0%
TAACACACGTGCACAGCCGG+AGG - chr3_1:64528118-64528137 Msa0368190:CDS 60.0%
CAGCCGGAGGATGTCGTTGA+AGG - chr3_1:64528131-64528150 Msa0368190:CDS 60.0%
!! GGTGTCACCAATGGTGGGCT+AGG + chr3_1:64525976-64525995 None:intergenic 60.0%
TAACACACGTGCACAGCCGG+AGG - chr3_1:64528118-64528137 Msa0368190:CDS 60.0%
CAGCCGGAGGATGTCGTTGA+AGG - chr3_1:64528131-64528150 Msa0368190:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 64525871 64528175 64525871 ID=Msa0368190;Name=Msa0368190
chr3_1 mRNA 64525871 64528175 64525871 ID=Msa0368190-mRNA-1;Parent=Msa0368190;Name=Msa0368190-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|1|0.5|4|0|162
chr3_1 exon 64528033 64528175 64528033 ID=Msa0368190-mRNA-1:exon:12873;Parent=Msa0368190-mRNA-1
chr3_1 exon 64527352 64527469 64527352 ID=Msa0368190-mRNA-1:exon:12872;Parent=Msa0368190-mRNA-1
chr3_1 exon 64526678 64526818 64526678 ID=Msa0368190-mRNA-1:exon:12871;Parent=Msa0368190-mRNA-1
chr3_1 exon 64525871 64525954 64525871 ID=Msa0368190-mRNA-1:exon:12870;Parent=Msa0368190-mRNA-1
chr3_1 CDS 64528033 64528175 64528033 ID=Msa0368190-mRNA-1:cds;Parent=Msa0368190-mRNA-1
chr3_1 CDS 64527352 64527469 64527352 ID=Msa0368190-mRNA-1:cds;Parent=Msa0368190-mRNA-1
chr3_1 CDS 64526678 64526818 64526678 ID=Msa0368190-mRNA-1:cds;Parent=Msa0368190-mRNA-1
chr3_1 CDS 64525871 64525954 64525871 ID=Msa0368190-mRNA-1:cds;Parent=Msa0368190-mRNA-1
Gene Sequence

>Msa0368190

TTCCTTGAAATCAGTCCTGAAGGTAAAGTTCCCGTAATAAATTTTGATGGAAAGTGGGTTGCTGATTCAGATTTAATCACACAAACATTGGAAGAGAAGTATCCTAGCCCACCATTGGTGACACCACCTGAAAAGGCTACAGCTGGGTCAAAGATCTTCTCTACATTTATTGGATTTCTCAAGAGCAAAGATCCCAATGATGGAACAGAACAGGCATTGCTAAATGAACTTAGCTCCTTCAATGATTACCTCAAGGAAAATGGTCCTTTTGTCAATGGGAAACACATATCTGCGGCTGACCTATCACTAGGACCAAAGCTATACCATTTGGAGATTGCTTTGGGACATTATAAGAAATGGACAGTACCTGATTCACTGACCTTTTTGAAGTCTTACTTGAAGGAAATTTTCTCGAGGGAATCATTCATTAACACACGTGCACAGCCGGAGGATGTCGTTGAAGGTTGGCGTCCTAAAGTAGAGGGT

Protein sequence

>Msa0368190

FLEISPEGKVPVINFDGKWVADSDLITQTLEEKYPSPPLVTPPEKATAGSKIFSTFIGFLKSKDPNDGTEQALLNELSSFNDYLKENGPFVNGKHISAADLSLGPKLYHLEIALGHYKKWTVPDSLTFLKSYLKEIFSRESFINTRAQPEDVVEGWRPKVEG