AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0105190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0105190 MtrunA17_Chr1g0159991 91.489 376 22 1 321 686 8 383 0.0 694
Msa0105190 MtrunA17_Chr1g0159991 61.648 352 100 2 3 321 9 358 3.05e-148 436
Msa0105190 MtrunA17_Chr1g0159981 85.714 378 44 1 319 686 16 393 0.0 655
Msa0105190 MtrunA17_Chr1g0159981 63.714 350 91 3 6 321 21 368 5.20e-151 443
Msa0105190 MtrunA17_Chr1g0160011 83.690 374 48 3 321 683 11 382 0.0 627
Msa0105190 MtrunA17_Chr1g0160011 59.424 382 105 6 3 345 12 382 6.78e-146 430
Msa0105190 MtrunA17_Chr1g0159971 81.003 379 36 3 1 345 15 391 0.0 607
Msa0105190 MtrunA17_Chr1g0159971 64.675 385 120 3 317 685 9 393 5.78e-179 515
Msa0105190 MtrunA17_Chr1g0160031 78.780 377 68 2 320 686 10 384 0.0 598
Msa0105190 MtrunA17_Chr1g0160031 55.968 377 125 5 3 345 12 381 2.10e-140 416
Msa0105190 MtrunA17_Chr1g0160101 59.115 384 144 3 314 685 7 389 7.13e-155 453
Msa0105190 MtrunA17_Chr1g0160101 63.202 356 95 3 2 323 14 367 4.73e-153 448
Msa0105190 MtrunA17_Chr7g0254461 53.050 377 163 4 323 685 17 393 1.55e-138 411
Msa0105190 MtrunA17_Chr7g0254461 50.789 380 147 5 4 345 14 391 7.17e-128 384
Msa0105190 MtrunA17_Chr8g0381581 51.969 381 168 4 312 679 5 383 5.99e-135 402
Msa0105190 MtrunA17_Chr8g0381581 50.802 374 144 4 7 344 17 386 2.18e-121 367
Msa0105190 MtrunA17_Chr7g0226941 47.778 360 169 5 341 685 25 380 3.03e-106 328
Msa0105190 MtrunA17_Chr7g0226941 45.272 349 148 5 14 324 16 359 2.58e-93 294
Msa0105190 MtrunA17_Chr7g0275291 41.489 376 198 6 323 683 7 375 2.88e-92 291
Msa0105190 MtrunA17_Chr7g0275291 37.666 377 194 5 9 350 10 380 2.20e-77 252
Msa0105190 MtrunA17_Chr7g0273101 45.506 356 171 10 338 676 18 367 1.22e-89 285
Msa0105190 MtrunA17_Chr7g0273101 42.687 335 148 7 29 324 26 355 6.18e-78 254
Msa0105190 MtrunA17_Chr6g0450701 43.802 363 173 10 339 683 29 378 1.99e-89 284
Msa0105190 MtrunA17_Chr6g0450701 40.731 383 166 10 9 345 11 378 9.27e-82 264
Msa0105190 MtrunA17_Chr7g0226911 40.000 380 199 10 328 683 10 384 1.45e-86 276
Msa0105190 MtrunA17_Chr7g0226911 37.696 382 184 7 11 345 10 384 1.26e-75 248
Msa0105190 MtrunA17_Chr8g0352901 42.078 385 183 10 323 683 4 372 1.99e-85 273
Msa0105190 MtrunA17_Chr8g0352901 37.018 389 181 10 4 345 1 372 2.59e-68 228
Msa0105190 MtrunA17_Chr8g0347751 40.556 360 186 6 344 683 31 382 4.04e-84 270
Msa0105190 MtrunA17_Chr8g0347751 37.368 380 185 5 14 350 18 387 2.03e-74 244
Msa0105190 MtrunA17_Chr7g0226931 40.967 393 187 12 329 683 13 398 5.87e-84 270
Msa0105190 MtrunA17_Chr7g0226931 38.441 372 166 7 11 324 13 379 2.81e-74 245
Msa0105190 MtrunA17_Chr1g0191461 43.127 371 185 11 325 677 7 369 9.19e-83 266
Msa0105190 MtrunA17_Chr1g0191461 40.227 353 163 9 11 324 13 356 4.49e-72 238
Msa0105190 MtrunA17_Chr6g0450711 39.898 391 193 10 323 684 85 462 2.59e-82 268
Msa0105190 MtrunA17_Chr6g0450711 40.882 340 147 6 23 321 113 439 1.22e-69 234
Msa0105190 MtrunA17_Chr6g0450731 40.669 359 177 10 341 684 25 362 6.40e-80 258
Msa0105190 MtrunA17_Chr6g0450731 38.953 344 151 8 16 321 17 339 6.57e-67 224
Msa0105190 MtrunA17_Chr6g0450721 37.760 384 193 9 323 684 1 360 3.96e-78 253
Msa0105190 MtrunA17_Chr6g0450721 38.527 353 151 7 11 321 9 337 2.84e-65 219
Msa0105190 MtrunA17_Chr7g0271551 41.261 349 173 10 349 684 36 365 1.06e-75 247
Msa0105190 MtrunA17_Chr7g0271551 39.255 349 145 10 32 339 36 358 2.14e-64 217
Msa0105190 MtrunA17_Chr8g0339251 40.870 345 160 12 323 648 4 323 1.17e-64 217
Msa0105190 MtrunA17_Chr8g0339251 37.391 345 154 9 4 308 1 323 1.28e-60 206
Msa0105190 MtrunA17_Chr2g0283531 35.754 358 183 13 347 677 29 366 9.01e-50 178
Msa0105190 MtrunA17_Chr2g0283531 35.380 342 157 12 30 324 29 353 2.25e-49 177
Msa0105190 MtrunA17_Chr2g0283481 33.512 373 203 12 329 675 27 380 8.66e-46 167
Msa0105190 MtrunA17_Chr2g0283481 32.603 365 175 12 6 321 24 366 2.71e-43 160
Msa0105190 MtrunA17_Chr2g0283501 33.151 365 201 10 337 675 18 365 1.49e-45 166
Msa0105190 MtrunA17_Chr2g0283501 32.181 376 169 11 9 328 13 358 3.24e-44 162
Msa0105190 MtrunA17_Chr3g0104821 33.611 360 189 14 347 677 42 380 6.26e-44 162
Msa0105190 MtrunA17_Chr3g0104821 32.565 347 161 11 30 324 42 367 3.44e-41 154
Msa0105190 MtrunA17_Chr2g0317261 30.623 369 179 12 2 324 1 338 3.95e-42 156
Msa0105190 MtrunA17_Chr2g0317261 30.878 353 193 11 347 677 28 351 3.35e-40 151
Msa0105190 MtrunA17_Chr2g0283511 30.749 387 221 11 318 677 2 368 4.31e-42 157
Msa0105190 MtrunA17_Chr2g0283511 32.239 335 159 8 37 321 36 352 1.28e-40 153
Msa0105190 MtrunA17_Chr2g0317271 30.663 362 175 11 9 324 7 338 2.05e-41 154
Msa0105190 MtrunA17_Chr2g0317271 30.878 353 193 11 347 677 28 351 9.12e-40 150
Msa0105190 MtrunA17_Chr0c01g0489581 30.894 369 178 12 2 324 1 338 2.22e-41 154
Msa0105190 MtrunA17_Chr0c01g0489581 30.595 353 194 11 347 677 28 351 2.98e-39 148
Msa0105190 MtrunA17_Chr0c01g0489571 30.894 369 178 12 2 324 1 338 2.50e-41 154
Msa0105190 MtrunA17_Chr0c01g0489571 30.878 353 193 11 347 677 28 351 1.16e-39 149
Msa0105190 MtrunA17_Chr4g0057991 31.728 353 197 12 347 676 37 368 7.43e-40 150
Msa0105190 MtrunA17_Chr4g0057991 27.568 370 203 12 4 328 11 360 1.04e-30 124
Msa0105190 MtrunA17_Chr2g0301581 31.143 350 159 11 23 324 25 340 1.65e-38 146
Msa0105190 MtrunA17_Chr2g0301581 31.564 358 182 14 347 677 32 353 3.49e-35 137
Msa0105190 MtrunA17_Chr2g0301541 30.857 350 160 11 23 324 25 340 4.43e-38 145
Msa0105190 MtrunA17_Chr2g0301541 31.006 358 184 14 347 677 32 353 1.04e-33 132
Msa0105190 MtrunA17_Chr3g0112821 32.743 339 163 12 30 324 28 345 6.04e-38 145
Msa0105190 MtrunA17_Chr3g0112821 32.022 356 192 15 347 677 28 358 5.98e-37 142
Msa0105190 MtrunA17_Chr3g0093031 32.362 343 164 12 30 324 28 350 7.59e-37 142
Msa0105190 MtrunA17_Chr3g0093031 31.667 360 193 15 347 677 28 363 4.17e-35 137
Msa0105190 MtrunA17_Chr3g0112691 32.258 341 165 11 30 324 28 348 1.21e-36 141
Msa0105190 MtrunA17_Chr3g0112691 31.073 354 201 11 347 677 28 361 1.29e-35 138
Msa0105190 MtrunA17_Chr3g0096551 30.986 355 165 11 30 324 27 361 2.61e-34 135
Msa0105190 MtrunA17_Chr3g0096551 29.891 368 201 13 347 677 27 374 4.03e-32 128
Msa0105190 MtrunA17_Chr2g0283541 34.653 303 138 11 30 324 29 279 3.30e-33 129
Msa0105190 MtrunA17_Chr2g0283541 32.895 228 127 9 466 677 75 292 1.77e-24 104
Msa0105190 MtrunA17_Chr8g0341001 30.601 366 204 15 324 667 9 346 6.24e-33 130
Msa0105190 MtrunA17_Chr8g0341001 26.923 364 205 11 1 324 1 343 9.70e-26 109
Msa0105190 MtrunA17_Chr2g0330781 30.994 342 188 13 348 667 30 345 1.43e-32 129
Msa0105190 MtrunA17_Chr2g0330781 27.139 339 186 10 31 329 30 347 4.11e-26 110
Msa0105190 MtrunA17_Chr8g0344941 30.854 363 205 13 326 667 18 355 2.29e-32 129
Msa0105190 MtrunA17_Chr8g0344941 29.213 356 189 10 10 324 19 352 2.82e-29 120
Msa0105190 MtrunA17_Chr8g0349341 31.045 335 196 10 349 670 37 349 3.76e-32 128
Msa0105190 MtrunA17_Chr8g0349341 28.267 329 178 8 32 324 37 343 1.51e-27 114
Msa0105190 MtrunA17_Chr8g0349321 31.045 335 196 10 349 670 37 349 4.51e-32 128
Msa0105190 MtrunA17_Chr8g0349321 28.267 329 178 8 32 324 37 343 1.95e-23 102
Msa0105190 MtrunA17_Chr5g0432101 27.366 391 215 17 327 683 7 362 1.34e-30 124
Msa0105190 MtrunA17_Chr4g0027521 29.107 347 200 12 348 672 26 348 1.35e-29 120
Msa0105190 MtrunA17_Chr4g0027521 25.656 343 178 11 31 324 26 340 3.23e-22 99.0
Msa0105190 MtrunA17_Chr2g0301591 34.091 264 144 9 23 261 25 283 3.32e-29 117
Msa0105190 MtrunA17_Chr2g0301591 29.530 298 162 10 328 601 10 283 3.37e-22 97.4
Msa0105190 MtrunA17_Chr8g0374101 28.108 370 223 13 323 670 12 360 1.42e-27 115
Msa0105190 MtrunA17_Chr8g0374101 24.551 334 187 10 32 320 37 350 7.91e-17 82.8
Msa0105190 MtrunA17_Chr1g0156911 30.523 344 185 13 344 663 32 345 4.19e-27 113
Msa0105190 MtrunA17_Chr1g0156911 25.815 368 180 13 16 328 21 350 6.09e-18 86.3
Msa0105190 MtrunA17_Chr5g0438631 28.969 359 205 16 329 663 6 338 1.37e-26 111
Msa0105190 MtrunA17_Chr5g0438631 26.050 357 197 12 11 324 7 339 1.63e-21 96.7
Msa0105190 MtrunA17_Chr2g0320671 28.529 340 198 13 348 667 29 343 1.40e-26 111
Msa0105190 MtrunA17_Chr2g0320671 26.016 369 209 12 1 329 1 345 3.25e-19 89.7
Msa0105190 MtrunA17_Chr5g0396511 27.920 351 206 13 351 680 48 372 3.17e-26 111
Msa0105190 MtrunA17_Chr5g0396511 28.267 329 170 14 34 320 48 352 1.81e-19 91.3
Msa0105190 MtrunA17_Chr3g0099161 30.028 353 196 13 348 675 91 417 3.53e-26 112
Msa0105190 MtrunA17_Chr3g0099161 27.164 335 176 15 31 321 91 401 3.31e-15 78.6
Msa0105190 MtrunA17_Chr5g0444401 28.045 353 197 13 348 673 27 349 1.16e-25 109
Msa0105190 MtrunA17_Chr8g0349331 28.834 326 197 11 10 324 10 311 1.44e-25 108
Msa0105190 MtrunA17_Chr8g0349331 27.348 362 193 11 319 663 2 310 8.75e-25 105
Msa0105190 MtrunA17_Chr8g0349301 31.959 291 166 10 349 626 37 308 2.58e-25 107
Msa0105190 MtrunA17_Chr8g0349301 28.477 302 163 10 32 298 37 320 3.46e-23 101
Msa0105190 MtrunA17_Chr1g0156921 27.493 371 208 17 323 661 8 349 3.30e-25 107
Msa0105190 MtrunA17_Chr2g0301641 29.107 347 199 15 349 673 43 364 3.92e-25 108
Msa0105190 MtrunA17_Chr2g0301641 26.829 369 201 14 1 324 11 355 8.69e-23 101
Msa0105190 MtrunA17_Chr7g0274991 28.378 370 211 14 329 671 8 350 4.62e-25 107
Msa0105190 MtrunA17_Chr5g0438621 28.219 365 200 15 323 662 11 338 4.85e-25 107
Msa0105190 MtrunA17_Chr1g0157001 27.832 309 185 11 373 667 63 347 7.64e-25 107
Msa0105190 MtrunA17_Chr3g0131321 28.000 350 206 12 347 676 32 355 8.38e-25 107
Msa0105190 MtrunA17_Chr3g0131321 24.390 369 206 11 2 324 6 347 1.34e-15 79.3
Msa0105190 MtrunA17_Chr4g0068441 29.124 388 217 17 312 674 2 356 8.67e-25 106
Msa0105190 MtrunA17_Chr3g0120861 27.324 355 205 15 342 672 31 356 9.77e-25 106
Msa0105190 MtrunA17_Chr3g0120861 26.149 348 192 13 12 317 17 341 1.89e-22 99.8
Msa0105190 MtrunA17_Chr1g0156931 28.412 359 197 14 333 667 30 352 1.00e-24 106
Msa0105190 MtrunA17_Chr3g0104831 29.897 291 161 11 410 677 29 299 1.37e-24 104
Msa0105190 MtrunA17_Chr3g0104831 27.007 274 132 9 98 324 34 286 2.33e-17 83.6
Msa0105190 MtrunA17_Chr1g0156901 26.503 366 209 14 323 661 24 356 3.01e-24 105
Msa0105190 MtrunA17_Chr7g0275011 30.556 360 188 15 349 680 34 359 3.21e-24 105
Msa0105190 MtrunA17_Chr7g0275011 24.930 357 199 14 7 321 12 341 2.76e-14 75.1
Msa0105190 MtrunA17_Chr7g0275001 29.360 344 197 14 349 671 25 343 4.05e-24 104
Msa0105190 MtrunA17_Chr5g0438641 28.226 372 210 15 317 663 2 341 6.39e-24 103
Msa0105190 MtrunA17_Chr5g0438641 27.108 332 170 11 31 317 31 335 4.86e-21 95.5
Msa0105190 MtrunA17_Chr4g0046151 28.646 384 200 19 328 670 16 366 7.43e-24 103
Msa0105190 MtrunA17_Chr4g0046151 27.297 370 181 17 3 319 14 348 1.32e-18 88.2
Msa0105190 MtrunA17_Chr1g0156891 27.397 365 209 14 324 661 15 350 1.16e-23 103
Msa0105190 MtrunA17_Chr5g0405831 27.557 352 209 13 344 674 38 364 1.18e-23 103
Msa0105190 MtrunA17_Chr5g0405821 30.357 336 191 16 344 659 38 350 1.35e-23 103
Msa0105190 MtrunA17_Chr5g0405821 27.410 332 175 12 31 319 42 350 4.15e-20 92.8
Msa0105190 MtrunA17_Chr3g0099231 29.143 350 202 14 348 675 27 352 2.48e-23 102
Msa0105190 MtrunA17_Chr2g0294301 28.406 345 205 12 349 674 35 356 2.49e-23 102
Msa0105190 MtrunA17_Chr3g0099151 28.045 353 192 13 348 670 86 406 2.77e-23 103
Msa0105190 MtrunA17_Chr3g0099151 26.513 347 164 17 31 321 86 397 4.75e-15 77.8
Msa0105190 MtrunA17_Chr3g0105401 28.235 340 192 14 348 663 27 338 4.42e-23 101
Msa0105190 MtrunA17_Chr3g0105401 26.513 347 177 13 31 329 27 343 1.22e-18 88.2
Msa0105190 MtrunA17_Chr2g0283191 26.133 375 214 15 323 664 13 357 5.22e-23 101
Msa0105190 MtrunA17_Chr8g0371481 27.714 350 199 14 343 667 35 355 6.13e-23 101
Msa0105190 MtrunA17_Chr8g0371481 23.099 355 194 12 16 321 25 349 4.02e-12 68.6
Msa0105190 MtrunA17_Chr2g0294311 27.649 387 212 17 322 674 9 361 7.38e-23 101
Msa0105190 MtrunA17_Chr2g0294311 27.778 360 189 15 10 320 10 347 4.18e-20 92.8
Msa0105190 MtrunA17_Chr2g0285061 25.984 381 233 12 323 681 8 361 1.22e-22 100
Msa0105190 MtrunA17_Chr2g0285061 25.740 338 175 8 31 321 31 339 8.16e-20 92.0
Msa0105190 MtrunA17_Chr8g0380041 25.852 352 217 10 348 680 30 356 1.32e-22 100
Msa0105190 MtrunA17_Chr8g0380041 26.426 333 176 10 31 320 30 336 1.12e-16 82.4
Msa0105190 MtrunA17_Chr4g0008851 27.056 377 223 16 326 680 13 359 6.60e-22 98.2
Msa0105190 MtrunA17_Chr1g0182811 28.796 382 216 15 323 680 11 360 7.75e-22 98.2
Msa0105190 MtrunA17_Chr6g0457921 27.778 378 220 15 324 675 3 353 7.75e-22 97.8
Msa0105190 MtrunA17_Chr6g0457921 25.479 365 197 14 4 321 1 337 6.84e-15 77.0
Msa0105190 MtrunA17_Chr3g0142941 28.696 345 199 14 333 659 36 351 7.84e-22 97.8
Msa0105190 MtrunA17_Chr2g0301551 29.126 309 157 13 395 677 37 309 8.37e-22 97.1
Msa0105190 MtrunA17_Chr2g0301551 26.190 294 136 10 78 324 37 296 9.56e-20 90.9
Msa0105190 MtrunA17_Chr3g0092131 27.027 370 204 18 327 667 4 336 8.44e-22 97.8
Msa0105190 MtrunA17_Chr3g0092131 26.111 360 197 15 7 324 1 333 4.00e-18 86.7
Msa0105190 MtrunA17_Chr8g0371471 27.273 352 197 16 343 667 35 354 9.22e-22 97.8
Msa0105190 MtrunA17_Chr7g0275021 28.367 349 193 14 349 671 34 351 1.13e-21 97.4
Msa0105190 MtrunA17_Chr8g0344931 27.493 371 187 11 4 324 1 339 1.61e-21 97.1
Msa0105190 MtrunA17_Chr8g0344931 29.947 374 202 13 325 670 4 345 2.04e-20 93.6
Msa0105190 MtrunA17_Chr5g0434621 26.774 310 179 12 381 672 62 341 5.44e-21 95.1
Msa0105190 MtrunA17_Chr5g0434621 26.205 332 175 14 36 324 29 333 1.63e-14 75.5
Msa0105190 MtrunA17_Chr2g0301571 29.022 317 161 14 395 685 37 315 5.92e-21 94.4
Msa0105190 MtrunA17_Chr2g0301571 26.190 294 136 10 78 324 37 296 8.63e-20 90.9
Msa0105190 MtrunA17_Chr3g0086641 26.776 366 211 15 323 663 13 346 6.16e-21 95.5
Msa0105190 MtrunA17_Chr3g0086641 26.099 364 198 11 3 320 5 343 1.31e-18 88.2
Msa0105190 MtrunA17_Chr3g0142921 26.706 337 200 11 344 659 31 341 1.40e-20 94.0
Msa0105190 MtrunA17_Chr1g0189931 28.612 353 187 14 349 671 32 349 2.15e-20 93.6
Msa0105190 MtrunA17_Chr3g0077571 26.757 370 232 14 323 680 8 350 3.23e-20 92.8
Msa0105190 MtrunA17_Chr3g0077571 25.762 361 197 12 2 323 6 334 1.83e-18 87.8
Msa0105190 MtrunA17_Chr1g0189891 30.508 354 191 17 349 680 29 349 4.97e-20 92.4
Msa0105190 MtrunA17_Chr3g0077581 25.501 349 217 11 348 675 35 361 6.88e-20 92.0
Msa0105190 MtrunA17_Chr4g0027571 29.386 228 125 7 459 667 3 213 2.57e-19 87.4
Msa0105190 MtrunA17_Chr4g0027571 30.588 170 95 6 153 321 60 207 6.94e-11 62.8
Msa0105190 MtrunA17_Chr3g0104801 42.857 119 60 3 30 140 42 160 2.96e-19 85.9
Msa0105190 MtrunA17_Chr3g0104801 38.583 127 65 5 347 461 42 167 7.04e-15 73.6
Msa0105190 MtrunA17_Chr5g0420811 26.198 313 188 10 320 611 3 293 1.55e-18 87.8
Msa0105190 MtrunA17_Chr5g0420811 25.743 303 172 10 7 271 6 293 7.36e-16 79.7
Msa0105190 MtrunA17_Chr8g0371491 26.331 357 214 13 329 663 16 345 4.80e-18 86.3
Msa0105190 MtrunA17_Chr5g0437421 24.496 347 211 12 348 670 31 350 7.91e-18 85.9
Msa0105190 MtrunA17_Chr4g0060811 25.333 300 182 11 384 667 67 340 1.03e-17 85.5
Msa0105190 MtrunA17_Chr4g0017431 25.210 357 218 12 328 662 10 339 6.09e-17 83.2
Msa0105190 MtrunA17_Chr3g0085231 26.111 360 193 13 348 680 30 343 9.32e-17 82.4
Msa0105190 MtrunA17_Chr7g0229581 32.298 161 85 4 521 671 4 150 1.63e-16 77.4
Msa0105190 MtrunA17_Chr7g0273111 53.247 77 34 2 11 85 13 89 2.38e-16 75.1
Msa0105190 MtrunA17_Chr7g0266061 23.939 330 211 9 350 667 43 344 9.71e-16 79.3
Msa0105190 MtrunA17_Chr1g0178931 24.069 349 206 15 341 667 27 338 1.81e-15 78.6
Msa0105190 MtrunA17_Chr2g0284921 25.672 335 199 11 348 663 33 336 2.57e-15 78.2
Msa0105190 MtrunA17_Chr3g0085881 25.225 333 195 12 348 662 32 328 4.17e-15 77.4
Msa0105190 MtrunA17_Chr8g0370981 24.279 416 228 14 319 671 13 404 6.93e-15 77.4
Msa0105190 MtrunA17_Chr2g0284951 25.208 361 209 12 326 662 7 330 1.39e-14 76.3
Msa0105190 MtrunA17_Chr2g0284951 28.804 184 118 5 3 182 4 178 7.87e-11 64.3
Msa0105190 MtrunA17_Chr2g0284991 24.202 376 227 14 325 675 9 351 1.19e-13 73.2
Msa0105190 MtrunA17_Chr1g0198351 23.457 324 210 11 341 654 35 330 1.79e-13 72.4
Msa0105190 MtrunA17_Chr1g0198351 22.741 321 223 11 9 314 20 330 6.55e-11 64.7
Msa0105190 MtrunA17_Chr2g0285001 24.251 367 211 15 325 663 9 336 1.84e-13 72.8
Msa0105190 MtrunA17_Chr2g0285001 25.562 356 183 14 10 318 11 331 2.19e-13 72.4
Msa0105190 MtrunA17_Chr6g0459921 25.000 248 149 8 439 663 106 339 5.12e-13 71.2
Msa0105190 MtrunA17_Chr5g0440501 25.287 261 147 8 439 678 4 237 8.47e-13 68.9
Msa0105190 MtrunA17_Chr6g0455661 25.888 197 122 6 478 663 267 450 3.04e-12 69.3
Msa0105190 MtrunA17_Chr2g0301561 28.017 232 129 10 395 602 37 254 3.07e-12 67.4
Msa0105190 MtrunA17_Chr8g0370951 23.980 392 217 16 319 670 2 352 4.83e-12 68.2
Msa0105190 MtrunA17_Chr8g0380031 27.004 237 141 9 348 570 83 301 5.69e-12 68.2
Msa0105190 MtrunA17_Chr1g0198381 23.353 334 211 12 350 669 3 305 9.29e-12 66.6
Msa0105190 MtrunA17_Chr1g0198381 24.415 299 198 9 33 314 3 290 1.82e-11 65.9
Msa0105190 MtrunA17_Chr3g0106911 32.692 156 83 7 375 527 8 144 1.39e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0105190 AT3G26430.1 50.133 377 175 3 322 685 4 380 3.21e-129 387
Msa0105190 AT3G26430.1 48.997 349 139 3 8 317 4 352 1.06e-113 347
Msa0105190 AT1G67830.1 50.141 355 156 5 345 686 26 372 9.22e-122 368
Msa0105190 AT1G67830.1 49.547 331 131 2 27 321 25 355 9.47e-112 342
Msa0105190 AT5G14450.1 46.400 375 182 5 327 686 19 389 2.13e-112 344
Msa0105190 AT5G14450.1 45.932 381 161 6 4 345 12 386 3.30e-107 331
Msa0105190 AT3G27950.1 45.093 377 170 10 328 683 10 370 2.95e-91 289
Msa0105190 AT3G27950.1 40.533 375 172 7 11 347 11 372 9.22e-80 259
Msa0105190 AT1G54790.1 42.318 371 192 10 322 676 5 369 4.13e-85 273
Msa0105190 AT1G54790.1 37.912 364 178 8 2 324 1 357 6.71e-71 236
Msa0105190 AT1G54790.3 42.507 367 189 10 326 676 10 370 9.24e-84 270
Msa0105190 AT1G54790.3 41.011 356 161 9 11 324 10 358 9.90e-76 248
Msa0105190 AT1G56670.1 40.957 376 191 9 323 685 16 373 1.83e-83 268
Msa0105190 AT1G56670.1 36.800 375 177 11 5 338 9 364 5.55e-63 214
Msa0105190 AT4G01130.1 40.426 376 207 6 321 683 9 380 6.47e-83 267
Msa0105190 AT4G01130.1 36.096 374 200 4 8 345 10 380 5.57e-74 244
Msa0105190 AT1G09390.1 40.838 382 196 9 316 683 3 368 7.32e-81 261
Msa0105190 AT1G09390.1 39.130 345 154 9 31 338 36 361 2.73e-64 218
Msa0105190 AT1G54790.2 39.646 396 191 11 323 676 6 395 2.75e-79 258
Msa0105190 AT1G54790.2 35.385 390 178 9 2 324 1 383 2.84e-65 221
Msa0105190 AT3G05180.1 40.456 351 188 7 346 680 33 378 2.65e-73 242
Msa0105190 AT3G05180.1 42.183 339 152 7 29 328 33 366 1.84e-70 234
Msa0105190 AT3G62280.1 40.115 349 174 11 348 681 35 363 6.07e-68 227
Msa0105190 AT3G62280.1 37.278 338 154 8 22 321 26 343 3.15e-54 190
Msa0105190 AT4G01130.2 41.414 297 152 8 321 602 9 298 1.37e-62 212
Msa0105190 AT4G01130.2 35.517 290 151 2 8 262 10 298 2.75e-53 187
Msa0105190 AT1G56670.2 40.753 292 151 6 323 602 16 297 2.98e-59 202
Msa0105190 AT1G56670.2 35.473 296 144 6 6 262 10 297 6.15e-45 163
Msa0105190 AT4G01130.3 37.966 295 169 5 402 683 1 294 2.41e-56 194
Msa0105190 AT4G01130.3 31.650 297 164 4 85 345 1 294 4.95e-44 160
Msa0105190 AT1G28600.1 35.616 365 190 11 346 685 28 372 1.99e-55 194
Msa0105190 AT1G28600.1 35.040 371 173 12 4 324 1 353 4.02e-48 174
Msa0105190 AT1G28580.1 34.121 381 205 10 325 676 9 372 2.48e-54 191
Msa0105190 AT1G28580.1 30.352 369 192 8 4 324 9 360 3.06e-42 158
Msa0105190 AT1G28650.1 35.000 380 202 11 324 675 9 371 9.95e-54 189
Msa0105190 AT1G28650.1 33.243 367 173 9 10 324 14 360 2.62e-47 172
Msa0105190 AT1G31550.2 34.366 355 192 9 346 676 33 370 3.81e-50 180
Msa0105190 AT1G31550.2 34.188 351 168 9 21 324 24 358 1.61e-46 170
Msa0105190 AT1G28640.1 32.474 388 211 9 319 675 2 369 2.22e-49 178
Msa0105190 AT1G28640.1 32.075 371 186 8 7 328 9 362 4.75e-47 171
Msa0105190 AT1G28670.1 33.679 386 210 11 319 675 2 370 7.52e-49 176
Msa0105190 AT1G28670.1 32.153 367 184 10 7 324 9 359 2.94e-44 163
Msa0105190 AT5G45910.1 35.376 359 185 12 347 675 28 369 2.37e-48 174
Msa0105190 AT5G45910.1 35.817 349 152 12 30 324 28 358 8.03e-45 164
Msa0105190 AT1G28590.1 32.454 379 214 8 323 676 10 371 6.23e-48 174
Msa0105190 AT1G28590.1 33.151 365 176 10 11 324 12 359 5.24e-45 166
Msa0105190 AT3G62280.2 39.273 275 141 8 348 608 35 297 1.08e-47 170
Msa0105190 AT3G62280.2 36.170 282 131 5 22 266 26 295 1.89e-39 147
Msa0105190 AT1G31550.1 33.333 354 194 9 346 676 33 367 1.60e-46 170
Msa0105190 AT1G31550.1 33.143 350 170 9 21 324 24 355 3.37e-43 160
Msa0105190 AT1G28610.2 32.626 377 211 11 324 675 6 364 1.76e-45 167
Msa0105190 AT1G28610.2 31.978 369 181 12 5 324 6 353 9.86e-42 156
Msa0105190 AT1G28570.1 30.749 387 220 11 319 676 2 369 2.30e-44 164
Msa0105190 AT1G28570.1 30.518 367 188 9 7 324 9 357 1.25e-41 156
Msa0105190 AT2G27360.1 31.362 389 219 12 322 683 7 374 3.93e-44 163
Msa0105190 AT2G27360.1 31.868 364 186 9 7 324 10 357 1.46e-43 162
Msa0105190 AT1G28660.2 32.041 387 213 12 319 675 2 368 1.18e-43 162
Msa0105190 AT1G28660.2 32.213 357 195 11 7 324 9 357 1.01e-40 153
Msa0105190 AT1G28660.1 32.474 388 211 13 319 675 2 369 4.28e-43 160
Msa0105190 AT1G28660.1 32.123 358 195 10 7 324 9 358 1.61e-41 155
Msa0105190 AT3G48460.1 29.379 354 204 8 347 675 36 368 2.67e-38 146
Msa0105190 AT3G48460.1 28.691 359 213 7 5 328 11 361 3.38e-33 132
Msa0105190 AT1G28580.2 31.579 304 172 8 392 676 5 291 2.76e-38 144
Msa0105190 AT1G28580.2 26.712 292 155 6 75 324 5 279 2.52e-23 101
Msa0105190 AT3G16370.1 29.586 338 190 12 348 663 29 340 4.42e-28 116
Msa0105190 AT3G16370.1 28.909 339 170 13 31 324 29 341 3.83e-24 105
Msa0105190 AT5G40990.1 29.032 372 225 13 320 670 4 357 7.45e-28 116
Msa0105190 AT5G40990.1 25.753 365 211 10 1 324 6 351 2.53e-22 100
Msa0105190 AT5G03820.1 28.116 345 195 13 348 667 32 348 2.46e-27 114
Msa0105190 AT5G03820.1 27.778 360 198 13 1 321 6 342 9.97e-24 103
Msa0105190 AT1G75900.1 28.152 341 191 13 347 663 41 351 2.79e-27 114
Msa0105190 AT1G75900.1 25.225 333 188 11 30 323 41 351 3.39e-15 78.2
Msa0105190 AT5G22810.1 28.736 348 190 13 348 667 33 350 2.99e-27 114
Msa0105190 AT5G22810.1 28.144 334 181 10 31 324 33 347 2.61e-22 99.8
Msa0105190 AT2G23540.1 27.966 354 193 13 349 670 48 371 3.58e-27 114
Msa0105190 AT2G23540.1 26.216 370 196 16 6 320 14 361 2.55e-17 85.1
Msa0105190 AT5G03820.2 27.487 382 220 15 313 667 25 376 4.47e-27 114
Msa0105190 AT5G03820.2 27.778 360 198 13 1 321 34 370 2.59e-23 103
Msa0105190 AT4G10950.2 27.684 354 209 12 348 680 70 397 1.33e-26 113
Msa0105190 AT4G10950.2 27.628 333 173 13 31 320 70 377 8.33e-21 95.9
Msa0105190 AT1G53920.1 28.446 341 203 10 335 657 34 351 2.19e-26 112
Msa0105190 AT1G53920.1 25.627 359 200 11 4 317 15 351 3.51e-24 105
Msa0105190 AT1G59406.1 28.177 362 214 13 325 667 6 340 2.68e-26 111
Msa0105190 AT1G59030.1 28.177 362 214 13 325 667 6 340 2.68e-26 111
Msa0105190 AT1G58725.1 28.177 362 214 13 325 667 6 340 2.68e-26 111
Msa0105190 AT5G42170.1 28.863 343 198 12 344 667 45 360 6.36e-26 110
Msa0105190 AT1G71120.1 28.022 364 194 11 336 670 18 342 8.69e-26 110
Msa0105190 AT1G71120.1 26.023 342 184 9 24 324 23 336 1.11e-22 100
Msa0105190 AT5G45670.1 26.593 361 221 11 322 663 3 338 2.02e-25 108
Msa0105190 AT5G45670.1 25.281 356 206 7 4 320 1 335 3.10e-20 93.6
Msa0105190 AT3G14225.1 30.409 342 201 13 349 670 37 361 2.50e-25 108
Msa0105190 AT3G14225.1 26.420 352 199 11 27 338 32 363 2.32e-16 82.0
Msa0105190 AT1G28570.2 28.963 328 172 12 7 324 9 285 2.74e-25 107
Msa0105190 AT1G28570.2 25.347 288 182 10 406 676 26 297 3.96e-20 92.4
Msa0105190 AT3G14225.2 30.792 341 197 13 349 670 37 357 3.94e-25 108
Msa0105190 AT3G14225.2 26.136 352 196 9 27 338 32 359 3.16e-16 81.6
Msa0105190 AT1G28600.2 36.967 211 117 7 4 205 1 204 4.09e-25 104
Msa0105190 AT1G28600.2 35.829 187 100 5 346 522 28 204 1.95e-21 94.0
Msa0105190 AT5G03810.1 25.862 348 198 13 348 667 29 344 4.51e-25 107
Msa0105190 AT2G42990.1 28.108 370 210 15 323 666 1 340 6.31e-25 107
Msa0105190 AT2G42990.1 26.479 355 193 12 12 324 10 338 1.05e-21 97.8
Msa0105190 AT3G50400.1 28.125 352 200 14 347 670 32 358 1.37e-24 106
Msa0105190 AT5G08460.1 27.559 381 223 15 327 681 28 381 2.56e-24 106
Msa0105190 AT5G08460.1 26.331 357 189 13 9 318 28 357 9.61e-21 95.5
Msa0105190 AT4G26790.1 26.686 341 205 13 347 667 27 342 2.63e-24 105
Msa0105190 AT4G26790.1 25.915 328 181 10 30 317 27 332 1.52e-19 91.3
Msa0105190 AT4G26790.2 26.686 341 205 13 347 667 27 342 2.63e-24 105
Msa0105190 AT4G26790.2 25.915 328 181 10 30 317 27 332 1.52e-19 91.3
Msa0105190 AT1G20120.1 30.194 361 194 17 342 674 71 401 2.68e-24 106
Msa0105190 AT4G10950.1 27.401 354 206 13 348 680 70 393 3.05e-24 106
Msa0105190 AT4G10950.1 27.327 333 170 14 31 320 70 373 1.97e-18 88.6
Msa0105190 AT5G63170.1 28.451 355 199 12 324 659 3 321 4.40e-24 104
Msa0105190 AT1G53940.2 30.702 342 196 14 349 670 39 359 5.21e-24 105
Msa0105190 AT1G53940.2 26.972 393 212 15 11 353 8 375 6.48e-20 92.8
Msa0105190 AT3G04290.1 29.060 351 188 13 349 671 29 346 6.75e-24 104
Msa0105190 AT2G04570.1 26.110 383 207 15 324 672 6 346 5.91e-23 101
Msa0105190 AT5G45960.1 29.553 291 166 13 349 614 47 323 6.47e-23 101
Msa0105190 AT5G15720.1 26.190 336 205 10 348 663 29 341 7.71e-23 101
Msa0105190 AT5G45950.1 26.254 339 197 13 349 666 40 346 1.50e-22 100
Msa0105190 AT3G53100.1 26.648 349 205 13 342 667 22 342 1.85e-22 100
Msa0105190 AT2G30310.1 26.822 343 200 11 341 659 26 341 2.36e-22 99.8
Msa0105190 AT3G43570.1 25.634 355 208 11 323 667 3 311 2.49e-22 99.0
Msa0105190 AT1G29670.1 25.281 356 220 12 328 663 10 339 2.56e-22 99.8
Msa0105190 AT1G06990.1 25.074 339 206 13 347 663 35 347 4.25e-22 99.0
Msa0105190 AT1G58430.1 27.645 293 171 10 347 614 33 309 4.71e-22 99.0
Msa0105190 AT5G37690.1 28.105 306 170 14 381 667 64 338 4.71e-22 99.0
Msa0105190 AT1G20130.1 27.507 349 199 14 343 663 198 520 6.93e-22 100
Msa0105190 AT1G20130.2 27.507 349 199 14 343 663 178 500 7.56e-22 100
Msa0105190 AT2G31540.1 25.320 391 222 17 318 672 2 358 9.98e-22 97.8
Msa0105190 AT1G29670.2 25.137 366 229 11 317 663 68 407 1.12e-21 99.0
Msa0105190 AT2G30220.1 26.765 340 196 14 347 661 31 342 1.27e-21 97.4
Msa0105190 AT2G24560.1 26.954 371 211 15 318 659 2 341 2.26e-21 97.1
Msa0105190 AT4G18970.1 25.672 335 206 10 348 663 27 337 2.46e-21 96.7
Msa0105190 AT4G18970.1 24.316 329 189 7 31 320 27 334 4.07e-16 80.9
Msa0105190 AT5G18430.1 28.571 343 200 12 349 670 28 346 2.51e-21 96.7
Msa0105190 AT1G28610.1 34.434 212 115 8 5 205 6 204 3.47e-21 94.0
Msa0105190 AT1G28610.1 34.239 184 101 5 342 515 24 197 6.66e-19 87.4
Msa0105190 AT4G18970.2 25.672 335 206 10 348 663 27 337 4.11e-21 97.1
Msa0105190 AT4G18970.2 24.316 329 189 7 31 320 27 334 2.54e-16 82.4
Msa0105190 AT1G33811.1 25.731 342 212 12 343 663 28 348 1.01e-20 95.1
Msa0105190 AT1G54030.1 28.669 293 154 9 381 660 87 337 1.02e-20 95.9
Msa0105190 AT1G54030.1 24.359 312 183 10 33 319 53 336 2.35e-13 73.2
Msa0105190 AT5G03610.1 25.904 332 205 12 350 667 44 348 1.15e-20 94.7
Msa0105190 AT1G75880.2 27.945 365 213 16 328 667 26 365 1.19e-20 95.1
Msa0105190 AT1G75890.3 26.087 391 230 15 302 663 26 386 1.52e-20 95.1
Msa0105190 AT1G58520.3 27.859 341 197 14 344 667 25 333 1.65e-20 94.0
Msa0105190 AT1G58525.1 27.859 341 197 14 344 667 25 333 1.65e-20 94.0
Msa0105190 AT1G75880.1 27.869 366 213 17 328 667 26 366 1.87e-20 94.4
Msa0105190 AT1G75880.1 23.691 363 199 13 9 321 26 360 2.37e-11 66.6
Msa0105190 AT1G53990.1 27.793 367 219 14 325 670 7 348 1.97e-20 94.4
Msa0105190 AT1G75890.2 27.177 379 216 16 314 663 10 357 2.86e-20 93.6
Msa0105190 AT1G28570.3 28.922 204 122 6 488 676 11 206 3.23e-20 90.5
Msa0105190 AT1G28570.3 26.562 192 95 4 171 324 11 194 1.89e-15 76.6
Msa0105190 AT1G54020.2 26.503 366 221 12 328 680 12 342 3.63e-20 93.6
Msa0105190 AT1G54020.2 25.562 356 190 11 4 321 6 324 2.28e-17 85.1
Msa0105190 AT5G33370.1 28.035 346 198 14 349 671 30 347 3.81e-20 93.2
Msa0105190 AT1G73610.1 27.778 342 193 13 344 667 30 335 5.02e-20 92.4
Msa0105190 AT1G20132.1 26.023 342 196 13 348 663 60 370 6.94e-20 92.8
Msa0105190 AT1G71691.2 26.243 362 210 14 337 673 41 370 7.08e-20 92.8
Msa0105190 AT1G71691.2 25.610 328 190 8 31 324 54 361 4.06e-16 81.3
Msa0105190 AT1G20135.1 26.158 367 211 13 317 664 2 327 1.18e-19 91.3
Msa0105190 AT2G40250.1 27.336 289 175 12 349 614 36 312 2.53e-19 90.9
Msa0105190 AT3G43550.1 28.667 300 178 12 323 602 3 286 3.44e-19 89.0
Msa0105190 AT1G75890.1 27.551 392 211 17 314 663 10 370 4.99e-19 90.1
Msa0105190 AT1G54000.1 26.273 373 224 15 325 680 12 350 5.24e-19 90.1
Msa0105190 AT1G54010.1 26.738 374 221 14 325 680 12 350 6.86e-19 89.7
Msa0105190 AT5G03980.1 28.796 191 110 5 488 663 127 306 7.20e-19 88.6
Msa0105190 AT5G03980.1 26.316 190 95 4 171 324 127 307 1.01e-14 76.3
Msa0105190 AT1G74460.1 28.443 334 192 16 351 663 25 332 8.85e-19 89.4
Msa0105190 AT1G75930.1 27.148 291 180 8 341 611 21 299 1.35e-18 88.2
Msa0105190 AT1G23500.1 29.474 285 161 10 349 611 35 301 1.84e-18 87.8
Msa0105190 AT1G29660.1 25.137 366 228 13 317 663 2 340 1.98e-18 88.2
Msa0105190 AT2G19050.1 26.286 350 197 13 348 675 30 340 2.36e-18 87.8
Msa0105190 AT1G71250.1 24.538 379 223 12 327 676 15 359 3.35e-18 87.4
Msa0105190 AT3G14820.1 25.449 334 212 12 348 667 31 341 9.00e-18 85.9
Msa0105190 AT2G24560.2 27.532 316 181 13 318 604 2 298 1.64e-17 84.7
Msa0105190 AT2G03980.2 26.901 342 189 16 346 660 40 347 1.91e-17 85.1
Msa0105190 AT2G03980.3 26.901 342 189 16 346 660 40 347 1.91e-17 85.1
Msa0105190 AT2G03980.1 26.901 342 189 16 346 660 40 347 1.91e-17 85.1
Msa0105190 AT2G03980.4 26.901 342 189 16 346 660 40 347 1.91e-17 85.1
Msa0105190 AT2G04020.1 31.280 211 127 8 346 549 40 239 1.93e-17 83.2
Msa0105190 AT5G37690.2 26.797 306 166 15 381 667 64 330 2.74e-17 84.3
Msa0105190 AT2G04020.2 31.280 211 127 8 346 549 40 239 3.30e-17 84.0
Msa0105190 AT5G55050.1 29.805 359 188 17 343 669 33 359 3.38e-17 84.7
Msa0105190 AT2G19010.1 25.429 350 200 13 348 675 29 339 3.48e-17 84.0
Msa0105190 AT3G14220.1 24.138 377 219 16 320 670 2 337 7.54e-17 83.2
Msa0105190 AT2G19010.2 25.429 350 200 13 348 675 59 369 8.02e-17 83.6
Msa0105190 AT2G19060.1 26.197 355 193 13 348 675 29 341 8.12e-17 83.2
Msa0105190 AT1G53940.1 31.752 274 152 12 349 602 39 297 9.73e-17 82.0
Msa0105190 AT1G53940.1 27.152 302 158 10 11 262 8 297 1.13e-12 69.7
Msa0105190 AT1G75910.1 25.939 293 176 9 344 611 23 299 1.07e-16 82.4
Msa0105190 AT1G75910.1 23.677 359 195 14 11 324 7 331 8.02e-12 67.8
Msa0105190 AT5G15720.3 24.183 306 187 9 375 663 33 310 1.62e-16 82.0
Msa0105190 AT5G15720.2 25.818 275 173 8 348 602 29 292 4.63e-16 80.1
Msa0105190 AT1G71691.3 27.148 291 167 12 337 602 41 311 5.07e-16 80.1
Msa0105190 AT1G71691.3 25.632 277 164 7 20 262 43 311 5.69e-13 70.9
Msa0105190 AT4G30140.1 27.011 348 195 14 348 675 32 340 7.48e-15 77.0
Msa0105190 AT4G16230.1 29.699 266 141 13 325 567 4 246 7.68e-15 75.5
Msa0105190 AT3G09930.2 24.242 330 208 13 350 664 40 342 8.05e-15 77.0
Msa0105190 AT3G09930.1 24.242 330 208 13 350 664 40 342 8.05e-15 77.0
Msa0105190 AT5G03600.1 25.000 336 193 14 348 664 13 308 8.65e-15 76.6
Msa0105190 AT5G41890.1 25.316 316 181 15 383 670 71 359 1.02e-14 77.0
Msa0105190 AT5G03600.2 25.000 336 193 14 348 664 48 343 1.35e-14 76.3
Msa0105190 AT1G75920.2 25.321 312 187 13 328 611 6 299 4.49e-14 74.7
Msa0105190 AT1G71691.1 23.920 301 177 12 393 673 1 269 8.12e-13 70.1
Msa0105190 AT2G19050.2 26.336 262 152 8 348 589 30 270 1.03e-12 69.7
Msa0105190 AT1G54030.2 28.780 205 111 6 381 577 87 264 2.74e-12 68.9
Msa0105190 AT5G33370.2 29.032 248 141 11 349 577 30 261 1.10e-11 67.0
Msa0105190 AT1G54020.1 24.138 290 177 9 400 680 1 256 1.10e-11 66.6
Msa0105190 AT1G54020.5 24.138 290 177 9 400 680 1 256 1.10e-11 66.6
Msa0105190 AT1G54020.3 24.138 290 177 9 400 680 1 256 1.10e-11 66.6
Msa0105190 AT2G31550.1 25.714 175 100 7 513 672 58 217 1.31e-11 65.1
Msa0105190 AT3G14210.1 24.118 340 210 11 339 661 26 334 1.49e-11 67.4

Find 145 sgRNAs with CRISPR-Local

Find 571 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTCTTTGTAGCAAATAT+TGG 0.178924 1_3:-13548382 None:intergenic
TATAAAATTCTTTACTATAT+CGG 0.214825 1_3:-13550794 None:intergenic
ACCAATATCAAATGTGTATA+AGG 0.220968 1_3:-13550707 None:intergenic
TACTGAATTTGAAGGGAAAA+TGG 0.224045 1_3:-13550461 None:intergenic
TGGATGTGTGCCTTTAATTT+TGG 0.224209 1_3:+13551050 Msa0105190:CDS
AACCATCTACTAGAATAATA+TGG 0.227325 1_3:+13551515 Msa0105190:CDS
AGCGCATATCTTGATTCTTT+GGG 0.238639 1_3:+13544097 Msa0105190:CDS
TGTCTAATGAATTGTGTTCT+AGG 0.252829 1_3:-13544253 None:intergenic
TTTGGAATAATAATCTTCTT+TGG 0.255011 1_3:-13550683 None:intergenic
AAGCGCATATCTTGATTCTT+TGG 0.258296 1_3:+13544096 Msa0105190:CDS
AATTAGGGGCCAGGTCATTT+TGG 0.264269 1_3:+13551007 Msa0105190:CDS
CCATTGGGTATAATACTATT+AGG 0.269389 1_3:-13550428 None:intergenic
GTAATTTCAGCTCAAAGTTT+TGG 0.272793 1_3:+13544061 Msa0105190:intron
GGAAAATTGGCCAAAATTAA+AGG 0.273646 1_3:-13551060 None:intergenic
ATCTAGAATATATACAAATT+AGG 0.275565 1_3:+13550991 Msa0105190:intron
TTCCCTGCAATCTTCAACTT+TGG 0.275888 1_3:+13542695 Msa0105190:CDS
AATTCTTTGTAGCAAATATT+GGG 0.277876 1_3:-13548381 None:intergenic
TCTAGAATATATACAAATTA+GGG 0.278589 1_3:+13550992 Msa0105190:intron
TTCTTTATATTAGACATATA+TGG 0.280042 1_3:+13551718 Msa0105190:three_prime_UTR
CTTTATAGCAGATGGAAAAT+TGG 0.280511 1_3:-13551073 None:intergenic
TTGGAATAATAATCTTCTTT+GGG 0.286703 1_3:-13550682 None:intergenic
TCCCATATTATTCTAGTAGA+TGG 0.294746 1_3:-13551517 None:intergenic
CGAATCATTCTTGATTTCAT+AGG 0.296923 1_3:+13548538 Msa0105190:CDS
ATCCTCCCATTCCACTAAAT+AGG 0.303807 1_3:+13551608 Msa0105190:CDS
GCCTTATACACATTTGATAT+TGG 0.309552 1_3:+13550706 Msa0105190:CDS
TTGAGTACCATTGACCTCTA+TGG 0.311057 1_3:-13545524 None:intergenic
GGAGAAATCATAAACATAAA+TGG 0.328429 1_3:+13551463 Msa0105190:CDS
ACTTATTTCCACAGACCTAA+TGG 0.339588 1_3:+13542785 Msa0105190:CDS
GCTTTGTACACATTTGATAT+TGG 0.345019 1_3:+13544413 Msa0105190:CDS
GACCATCTTCAAGAGTGAAT+TGG 0.350637 1_3:+13545569 Msa0105190:CDS
CAAGGAAGAGTATTTCTCTA+AGG 0.350686 1_3:+13544391 Msa0105190:CDS
ATAAAATTCTTTACTATATC+GGG 0.350692 1_3:-13550793 None:intergenic
TTGTAACATGCCCTATTTAG+TGG 0.352126 1_3:-13551619 None:intergenic
GTCTTTGATCAAATCTCTAC+TGG 0.362400 1_3:+13551574 Msa0105190:CDS
TTAGCTGAAAAGGATGAAAA+TGG 0.366007 1_3:+13545142 Msa0105190:intron
ATCAAATGTGTATAAGGCTT+TGG 0.373582 1_3:-13550701 None:intergenic
CGTCTAATTGTCGATTTCAT+TGG 0.373711 1_3:+13542824 Msa0105190:CDS
TCACCAAAGTTGAAGATTGC+AGG 0.385266 1_3:-13542698 None:intergenic
CTAGTTGTTTGTTGTGGCTA+TGG 0.388133 1_3:+13545460 Msa0105190:CDS
TCCTCCCATTCCACTAAATA+GGG 0.392622 1_3:+13551609 Msa0105190:CDS
AAATGCTGATACTGGTGGTT+TGG 0.396433 1_3:+13548438 Msa0105190:CDS
GCACCAAAGTTAAATATTGC+AGG 0.407053 1_3:-13548412 None:intergenic
ACCATCTTCAAGAGTGAATT+GGG 0.407177 1_3:+13545570 Msa0105190:CDS
GAGAAACTATTGATTATCTC+TGG 0.411103 1_3:-13544500 None:intergenic
CTTAGAGAAATACTCTTCCT+TGG 0.412709 1_3:-13544390 None:intergenic
CTTATTTCCACAGACCTAAT+GGG 0.420130 1_3:+13542786 Msa0105190:CDS
GGTGCTTCAAATGCTGATAC+TGG 0.421451 1_3:+13548430 Msa0105190:CDS
AATCTCTGAATTGAGTGTAT+TGG 0.422061 1_3:-13544225 None:intergenic
GATATTGGTCAAAATGATCT+TGG 0.426312 1_3:+13544428 Msa0105190:CDS
ATACACAACACTGGACCAAT+TGG 0.429145 1_3:+13551030 Msa0105190:CDS
GCAAAATTCATTAGAGATCA+AGG 0.430565 1_3:+13550512 Msa0105190:CDS
ATTAAGATATGGACTTAGGT+AGG 0.436390 1_3:-13550342 None:intergenic
CCATCAGAGAACCTCCCATT+AGG 0.438883 1_3:-13542800 None:intergenic
TTTCCTGCAATATTTAACTT+TGG 0.440023 1_3:+13548409 Msa0105190:CDS
ACCATCTACTAGAATAATAT+GGG 0.442115 1_3:+13551516 Msa0105190:CDS
GATCCTAGAGAATTAAGATA+TGG 0.444570 1_3:-13550353 None:intergenic
CAAGCACTTCAGTTGCCAAA+TGG 0.446432 1_3:+13548472 Msa0105190:CDS
TCAAGATATGCGCTTAGATA+AGG 0.460946 1_3:-13544088 None:intergenic
TTAGAGAAATACTCTTCCTT+GGG 0.465277 1_3:-13544389 None:intergenic
CCCACCTAGTATTATACCTC+AGG 0.465429 1_3:+13544174 Msa0105190:CDS
GGTCAAAATGATCTTACTGC+TGG 0.468242 1_3:+13550727 Msa0105190:CDS
TGGCTATCCTTTATAGCAGA+TGG 0.469012 1_3:-13551081 None:intergenic
CATGCCCTATTTAGTGGAAT+GGG 0.472312 1_3:-13551613 None:intergenic
AAACTCAGACACTGGTGGCT+TGG 0.473491 1_3:+13542724 Msa0105190:CDS
CATAGCCACAACAAACAACT+AGG 0.473839 1_3:-13545459 None:intergenic
CCACCCTGAGGTATAATACT+AGG 0.476832 1_3:-13544178 None:intergenic
CAAGATATGCGCTTAGATAA+GGG 0.482225 1_3:-13544087 None:intergenic
GTCTCTCCATATGGTGGCGT+TGG 0.483501 1_3:-13542764 None:intergenic
AGTCCATATCTTAATTCTCT+AGG 0.487332 1_3:+13550350 Msa0105190:CDS
AAATGGACTAAACATTCCAT+TGG 0.487410 1_3:-13550444 None:intergenic
ATTAAAGGCACACATCCAAT+TGG 0.488389 1_3:-13551045 None:intergenic
ACATGCCCTATTTAGTGGAA+TGG 0.489175 1_3:-13551614 None:intergenic
GAGAATTAAGATATGGACTT+AGG 0.490134 1_3:-13550346 None:intergenic
TGGAAATAAGTCTCTCCATA+TGG 0.492180 1_3:-13542773 None:intergenic
CTATGAAATCAAGAATGATT+CGG 0.493581 1_3:-13548537 None:intergenic
AAATGGTACAAACATTGTTG+TGG 0.497281 1_3:+13551480 Msa0105190:CDS
GGTGCAAACTTTGCAACAGC+AGG 0.502492 1_3:+13550389 Msa0105190:CDS
TGTATTGCTTTGCACAACCT+TGG 0.503056 1_3:-13551101 None:intergenic
AATGGTACAAACATTGTTGT+GGG 0.503607 1_3:+13551481 Msa0105190:CDS
TATAATTACAGCAGTAGTGT+TGG 0.509022 1_3:+13545490 Msa0105190:CDS
ACATATGTGATTGCAGCTAA+AGG 0.510042 1_3:-13545247 None:intergenic
TGGCAACTGAAGTGCTTGAA+AGG 0.511071 1_3:-13548467 None:intergenic
ATTGATTGTACTGAATTTGA+AGG 0.512446 1_3:-13550469 None:intergenic
GGTCAAAATGATCTTGGTGC+TGG 0.513823 1_3:+13544434 Msa0105190:CDS
CAAGCACCAACGCCACCATA+TGG 0.515260 1_3:+13542758 Msa0105190:CDS
GATCCACACGAAGTTGAGCT+AGG 0.516606 1_3:-13551164 None:intergenic
TCCCAATTCACTCTTGAAGA+TGG 0.517302 1_3:-13545571 None:intergenic
ATATATACAAATTAGGGGCC+AGG 0.517339 1_3:+13550998 Msa0105190:CDS
CATGTGGCATGTTGTGGCTA+TGG 0.526634 1_3:+13551406 Msa0105190:CDS
AATGGACTAAACATTCCATT+GGG 0.529064 1_3:-13550443 None:intergenic
CATCCCCTAGTTGTTTGTTG+TGG 0.531642 1_3:+13545454 Msa0105190:CDS
ATATTTCAATCATAAGTTGA+AGG 0.539994 1_3:+13545195 Msa0105190:CDS
ATTCTTTGTAGCAAATATTG+GGG 0.543366 1_3:-13548380 None:intergenic
TATTGGACATCAAGGTAGAA+AGG 0.543537 1_3:-13544208 None:intergenic
TTAAGATATGGACTTAGGTA+GGG 0.544125 1_3:-13550341 None:intergenic
TGGAATAATAATCTTCTTTG+GGG 0.555591 1_3:-13550681 None:intergenic
TACAGCAGTAGTGTTGGATG+TGG 0.559884 1_3:+13545496 Msa0105190:CDS
ACATATGTGATTGCAGCTAG+TGG 0.560723 1_3:-13551189 None:intergenic
GGTGACTCAAACTCAGACAC+TGG 0.562687 1_3:+13542716 Msa0105190:CDS
GCGCATATCTTGATTCTTTG+GGG 0.564900 1_3:+13544098 Msa0105190:CDS
TTGATTGTACTGAATTTGAA+GGG 0.569678 1_3:-13550468 None:intergenic
ATAGCCACAACAAACAACTA+GGG 0.571894 1_3:-13545458 None:intergenic
GTTGTTTGTTGTGGCTATGG+AGG 0.573272 1_3:+13545463 Msa0105190:CDS
CACCAAAGTTGAAGATTGCA+GGG 0.576163 1_3:-13542697 None:intergenic
CCTAATAGTATTATACCCAA+TGG 0.577765 1_3:+13550428 Msa0105190:CDS
ATTGAGTGTATTGGACATCA+AGG 0.579239 1_3:-13544216 None:intergenic
TCTTCAAGAGTGAATTGGGA+TGG 0.582285 1_3:+13545574 Msa0105190:CDS
AGCAGTAGTGTTGGATGTGG+AGG 0.587280 1_3:+13545499 Msa0105190:CDS
AGCCCTAGCTCAACTTCGTG+TGG 0.589422 1_3:+13551161 Msa0105190:CDS
CTACCACATGTGGCATGTTG+TGG 0.589804 1_3:+13551400 Msa0105190:CDS
TATAACATTCGTGCTAGATG+TGG 0.594579 1_3:+13551442 Msa0105190:CDS
CCTGAGGTATAATACTAGGT+GGG 0.598100 1_3:-13544174 None:intergenic
GCTTCAAATGCTGATACTGG+TGG 0.598979 1_3:+13548433 Msa0105190:CDS
ATTTGCAAGCTTGATGCCCA+AGG 0.600463 1_3:+13544373 Msa0105190:CDS
AAAATAACTGTGTTAAATCG+TGG 0.600847 1_3:+13551679 Msa0105190:three_prime_UTR
CAATGAAATCGACAATTAGA+CGG 0.606252 1_3:-13542823 None:intergenic
ATCCACACGAAGTTGAGCTA+GGG 0.606515 1_3:-13551163 None:intergenic
CCCTGAGGTATAATACTAGG+TGG 0.606983 1_3:-13544175 None:intergenic
AGAACCTCCCATTAGGTCTG+TGG 0.608880 1_3:-13542793 None:intergenic
GGAGGAACCATAGAGGTCAA+TGG 0.609556 1_3:+13545517 Msa0105190:CDS
CTAGGATCAAACTTCACACA+TGG 0.612367 1_3:+13550368 Msa0105190:CDS
CTGAGGTATAATACTAGGTG+GGG 0.612955 1_3:-13544173 None:intergenic
GCCCTATTTAGTGGAATGGG+AGG 0.622277 1_3:-13551610 None:intergenic
GTGCAAACTTTGCAACAGCA+GGG 0.631688 1_3:+13550390 Msa0105190:CDS
CCTAATGGGAGGTTCTCTGA+TGG 0.634494 1_3:+13542800 Msa0105190:CDS
CCACCTAGTATTATACCTCA+GGG 0.636374 1_3:+13544175 Msa0105190:CDS
TCTACTAGAATAATATGGGA+TGG 0.641361 1_3:+13551520 Msa0105190:CDS
TTCTTTGTAGCAAATATTGG+GGG 0.645637 1_3:-13548379 None:intergenic
AGGATTTGAGCTACCACATG+TGG 0.650013 1_3:+13551390 Msa0105190:intron
GTGGCATGTTGTGGCTATGG+AGG 0.654822 1_3:+13551409 Msa0105190:CDS
GACTCAAACTCAGACACTGG+TGG 0.655403 1_3:+13542719 Msa0105190:CDS
ATTTCCACAGACCTAATGGG+AGG 0.656669 1_3:+13542789 Msa0105190:CDS
TGAGGTATAATACTAGGTGG+GGG 0.657709 1_3:-13544172 None:intergenic
TAGCCACAACATGCCACATG+TGG 0.671628 1_3:-13551403 None:intergenic
AAATAAGTCTCTCCATATGG+TGG 0.673013 1_3:-13542770 None:intergenic
ACACAATTCATTAGACAACA+AGG 0.676208 1_3:+13544259 Msa0105190:CDS
TCTGCTATAAAGGATAGCCA+AGG 0.676832 1_3:+13551084 Msa0105190:CDS
TAGCCACAACAAACAACTAG+GGG 0.679936 1_3:-13545457 None:intergenic
CTAGAATATATACAAATTAG+GGG 0.698873 1_3:+13550993 Msa0105190:intron
CCTAGTATTATACCTCAGGG+TGG 0.705655 1_3:+13544178 Msa0105190:CDS
TGGATGTGGAGGAACCATAG+AGG 0.718015 1_3:+13545510 Msa0105190:CDS
GTTGTGTATCCAAAATGACC+TGG 0.720607 1_3:-13551016 None:intergenic
ATTGCTACTTTCAATCACTG+TGG 0.728286 1_3:-13542660 None:intergenic
AAAGGACTGTATCCACCCTG+AGG 0.752311 1_3:-13544190 None:intergenic
GGATGGTACACATTACACAG+AGG 0.801423 1_3:+13551537 Msa0105190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAATAATTTTTTAATT+GGG - chr1_3:13547575-13547594 None:intergenic 0.0%
!!! TTAAAAAATAATTTTTTAAT+TGG - chr1_3:13547576-13547595 None:intergenic 0.0%
!!! ATTTTTTATAAAAAATAATA+AGG - chr1_3:13549776-13549795 None:intergenic 0.0%
!!! TTTTGTATTTTAATTAGTTA+GGG - chr1_3:13543045-13543064 None:intergenic 10.0%
!! TAATGATAATTCTAAATAAA+AGG + chr1_3:13544015-13544034 Msa0105190:intron 10.0%
!!! ATTAATATTCACATATTTTT+AGG + chr1_3:13544307-13544326 Msa0105190:intron 10.0%
!!! ATTTGATTTGTTTATATAAT+AGG - chr1_3:13544862-13544881 None:intergenic 10.0%
!!! ATTCTTCTATATATATTTTA+TGG - chr1_3:13546982-13547001 None:intergenic 10.0%
!! ATTGATTAAAATAGAAAATA+GGG - chr1_3:13547250-13547269 None:intergenic 10.0%
!! AATTGATTAAAATAGAAAAT+AGG - chr1_3:13547251-13547270 None:intergenic 10.0%
!!! AATAATAATTCGTTTTTTTA+TGG + chr1_3:13547434-13547453 Msa0105190:intron 10.0%
!!! ATTCAAAAAAAATATTTTAC+AGG + chr1_3:13547501-13547520 Msa0105190:intron 10.0%
!!! TTCAAAAAAAATATTTTACA+GGG + chr1_3:13547502-13547521 Msa0105190:intron 10.0%
!!! ATTATTATTTTTGTATAGTT+TGG - chr1_3:13547935-13547954 None:intergenic 10.0%
!!! TTTTTTTTAATTCTTTTTTG+AGG - chr1_3:13548762-13548781 None:intergenic 10.0%
!!! TATAAGAGTATTAATTAATT+TGG + chr1_3:13549604-13549623 Msa0105190:intron 10.0%
!! TAATATTGATCTTTAATAAA+TGG + chr1_3:13549633-13549652 Msa0105190:intron 10.0%
!!! AATTATTTCTATATTTATGA+AGG + chr1_3:13550272-13550291 Msa0105190:intron 10.0%
!!! ATTATTTCTATATTTATGAA+GGG + chr1_3:13550273-13550292 Msa0105190:intron 10.0%
!! TATAAAATTCTTTACTATAT+CGG - chr1_3:13550797-13550816 None:intergenic 10.0%
!!! ATATTTTAATTTAAAGTTGA+AGG + chr1_3:13551137-13551156 Msa0105190:intron 10.0%
!!! TTTGTATTTTAATTAGTTAG+GGG - chr1_3:13543044-13543063 None:intergenic 15.0%
!!! GTTTTGTATTTTAATTAGTT+AGG - chr1_3:13543046-13543065 None:intergenic 15.0%
!! TACAATAAACAAACATAAAA+TGG - chr1_3:13543312-13543331 None:intergenic 15.0%
!!! AGTTCAATTTTTTTAAACAT+TGG - chr1_3:13543607-13543626 None:intergenic 15.0%
!! AAAAATCAAATTAAATTGAC+CGG - chr1_3:13543897-13543916 None:intergenic 15.0%
!! TGAAATTACAAATCATAAAT+TGG - chr1_3:13544050-13544069 None:intergenic 15.0%
!!! GTATGGTATTAAATAATTTT+TGG - chr1_3:13544811-13544830 None:intergenic 15.0%
!! ATAATCAATACAAAATAAGT+GGG - chr1_3:13544895-13544914 None:intergenic 15.0%
!! TATAATCAATACAAAATAAG+TGG - chr1_3:13544896-13544915 None:intergenic 15.0%
!! GAAAATACACAAAAATATAA+GGG - chr1_3:13545120-13545139 None:intergenic 15.0%
!!! TGAAAAAAATTAACGTTTTT+AGG + chr1_3:13545362-13545381 Msa0105190:intron 15.0%
!!! AATGTATATTTTAACATAAG+AGG + chr1_3:13545842-13545861 Msa0105190:intron 15.0%
!!! ATGTATATTTTAACATAAGA+GGG + chr1_3:13545843-13545862 Msa0105190:intron 15.0%
!!! TTTTTTTCAATATTCTCTTT+GGG - chr1_3:13546453-13546472 None:intergenic 15.0%
!!! TTTTTTTTCAATATTCTCTT+TGG - chr1_3:13546454-13546473 None:intergenic 15.0%
!!! TATTTTTTAAATCTGATCAT+TGG + chr1_3:13547055-13547074 Msa0105190:intron 15.0%
!!! TATTTGTGTAAAATTTTACA+TGG + chr1_3:13547212-13547231 Msa0105190:intron 15.0%
!! TTGATTAAAATAGAAAATAG+GGG - chr1_3:13547249-13547268 None:intergenic 15.0%
!!! AAAAAAAAAAACTTTTACAG+GGG - chr1_3:13547362-13547381 None:intergenic 15.0%
!!! GAAAAAAAAAAACTTTTACA+GGG - chr1_3:13547363-13547382 None:intergenic 15.0%
!! AAAAGAATTAAAAAAAACTG+TGG + chr1_3:13548765-13548784 Msa0105190:intron 15.0%
!!! TAAATGGTTTTTTTTTTTTG+TGG + chr1_3:13549649-13549668 Msa0105190:intron 15.0%
!!! TTACTAAAAATAGTGTTTTT+TGG + chr1_3:13549833-13549852 Msa0105190:intron 15.0%
!!! ATATTTTTTGTTGAGATTTA+AGG - chr1_3:13549993-13550012 None:intergenic 15.0%
!!! CGTCTTTTTATTATTATATT+TGG - chr1_3:13550008-13550027 None:intergenic 15.0%
!!! TCAATTGATTTTATCTTTAT+TGG - chr1_3:13550176-13550195 None:intergenic 15.0%
!!! AGTGATTATGATTTTAATTA+AGG + chr1_3:13550586-13550605 Msa0105190:intron 15.0%
!! GAAATTAAGAAAGAAAAAAT+TGG - chr1_3:13550623-13550642 None:intergenic 15.0%
!! ATAAAATTCTTTACTATATC+GGG - chr1_3:13550796-13550815 None:intergenic 15.0%
!!! ATCTAGAATATATACAAATT+AGG + chr1_3:13550991-13551010 Msa0105190:intron 15.0%
!!! TCTAGAATATATACAAATTA+GGG + chr1_3:13550992-13551011 Msa0105190:intron 15.0%
!! TTAAATCTTCATTAATATGT+AGG + chr1_3:13551370-13551389 Msa0105190:intron 15.0%
!! TTCTTTATATTAGACATATA+TGG + chr1_3:13551718-13551737 Msa0105190:three_prime_UTR 15.0%
!!! ATCAAGTTTATCATTTTTTG+TGG + chr1_3:13542619-13542638 Msa0105190:CDS 20.0%
!! AAACAAACATAAAATGGTTT+CGG - chr1_3:13543306-13543325 None:intergenic 20.0%
!!! GATTTTTTGTGAATAATTGA+AGG - chr1_3:13543758-13543777 None:intergenic 20.0%
!! TTATGAACTAAGATTGTTTA+AGG - chr1_3:13543860-13543879 None:intergenic 20.0%
!!! AAAAGGATGTTATTATGTTT+TGG - chr1_3:13543930-13543949 None:intergenic 20.0%
!!! AAAACATAATAACATCCTTT+TGG + chr1_3:13543929-13543948 Msa0105190:intron 20.0%
!!! AATATTCACATATTTTTAGG+TGG + chr1_3:13544310-13544329 Msa0105190:intron 20.0%
!! AAACCATGTCTTTATTATTA+AGG - chr1_3:13544337-13544356 None:intergenic 20.0%
!! TAGTTTCTCCAAAAATATTA+AGG + chr1_3:13544514-13544533 Msa0105190:CDS 20.0%
!!! TTGAACTACCTTAATATTTT+TGG - chr1_3:13544525-13544544 None:intergenic 20.0%
!! AATAGTTCAAACATTTAGAA+AGG - chr1_3:13544551-13544570 None:intergenic 20.0%
!! CAAACTTATTATATGTCTTA+TGG + chr1_3:13544591-13544610 Msa0105190:intron 20.0%
!! GCAAGTTAAAAAAATTCTAT+AGG + chr1_3:13544655-13544674 Msa0105190:intron 20.0%
!! TTTGATCTGTTAAAAAATGA+AGG + chr1_3:13544683-13544702 Msa0105190:intron 20.0%
!! TTGATCTGTTAAAAAATGAA+GGG + chr1_3:13544684-13544703 Msa0105190:intron 20.0%
!!! TTGATTTGTAAAACTGTTTT+TGG + chr1_3:13544737-13544756 Msa0105190:intron 20.0%
!! AAATTGTATAATATACCACA+AGG + chr1_3:13544935-13544954 Msa0105190:intron 20.0%
!! AGATCAATAAATTAAGAAAG+GGG - chr1_3:13545011-13545030 None:intergenic 20.0%
!! GAGATCAATAAATTAAGAAA+GGG - chr1_3:13545012-13545031 None:intergenic 20.0%
!! TGAGATCAATAAATTAAGAA+AGG - chr1_3:13545013-13545032 None:intergenic 20.0%
!! GGAAAATACACAAAAATATA+AGG - chr1_3:13545121-13545140 None:intergenic 20.0%
!!! ATATTTCAATCATAAGTTGA+AGG + chr1_3:13545195-13545214 Msa0105190:CDS 20.0%
!!! TTTTTTTGGGTTGTTAAAAA+TGG - chr1_3:13545296-13545315 None:intergenic 20.0%
!! TTTAACAACCCAAAAAAATA+TGG + chr1_3:13545298-13545317 Msa0105190:CDS 20.0%
!!! TTGACTTACCATATTTTTTT+GGG - chr1_3:13545309-13545328 None:intergenic 20.0%
!!! TTTGACTTACCATATTTTTT+TGG - chr1_3:13545310-13545329 None:intergenic 20.0%
!!! TAAAGCTCAATATATTTTGA+TGG - chr1_3:13545704-13545723 None:intergenic 20.0%
!! CTTATGCAAAAGATATTATT+GGG - chr1_3:13545812-13545831 None:intergenic 20.0%
!! TCTTATGCAAAAGATATTAT+TGG - chr1_3:13545813-13545832 None:intergenic 20.0%
!!! TTTTTTCAATATTCTCTTTG+GGG - chr1_3:13546452-13546471 None:intergenic 20.0%
!!! CGTTTTTTTTACCATATTTA+TGG - chr1_3:13546594-13546613 None:intergenic 20.0%
!!! ATATTTTATGGATTACTCAA+AGG - chr1_3:13546970-13546989 None:intergenic 20.0%
!!! AAAAAAAAAACTTTTACAGG+GGG - chr1_3:13547361-13547380 None:intergenic 20.0%
!!! GGAAAAAAAAAAACTTTTAC+AGG - chr1_3:13547364-13547383 None:intergenic 20.0%
!!! CAAAAATTTTGGTTTTTGTA+TGG - chr1_3:13547406-13547425 None:intergenic 20.0%
!!! TCTGAAGAAATTTTTTTTAC+AGG + chr1_3:13547472-13547491 Msa0105190:intron 20.0%
!!! AAGAAATTTTTTTTACAGGA+GGG + chr1_3:13547476-13547495 Msa0105190:intron 20.0%
!! ATGTCTCTTAAAAACAAATT+GGG - chr1_3:13547776-13547795 None:intergenic 20.0%
!! AATGTCTCTTAAAAACAAAT+TGG - chr1_3:13547777-13547796 None:intergenic 20.0%
!!! TTTCTATTGGTTAAAAACAA+TGG + chr1_3:13548100-13548119 Msa0105190:intron 20.0%
!! AATTCTTTGTAGCAAATATT+GGG - chr1_3:13548384-13548403 None:intergenic 20.0%
!! ATGTTCATACAAAATGAAAT+AGG - chr1_3:13548581-13548600 None:intergenic 20.0%
!!! TTAATTCTTTTTTGAGGAAA+CGG - chr1_3:13548756-13548775 None:intergenic 20.0%
!! ATTAGAGAATTCAAATTGTA+TGG + chr1_3:13548826-13548845 Msa0105190:intron 20.0%
!! TTAGAGAATTCAAATTGTAT+GGG + chr1_3:13548827-13548846 Msa0105190:intron 20.0%
!!! GTTTTATCATAGAAACAATA+TGG + chr1_3:13548873-13548892 Msa0105190:intron 20.0%
!!! TGTGATTTTTAAGAAAATAG+GGG - chr1_3:13548963-13548982 None:intergenic 20.0%
!!! GTGTGATTTTTAAGAAAATA+GGG - chr1_3:13548964-13548983 None:intergenic 20.0%
!!! TGTGTGATTTTTAAGAAAAT+AGG - chr1_3:13548965-13548984 None:intergenic 20.0%
!! AAAAATTACTAGACTTAATG+TGG - chr1_3:13549245-13549264 None:intergenic 20.0%
!!! AGTCTAGTAATTTTTTTCAA+AGG + chr1_3:13549250-13549269 Msa0105190:intron 20.0%
!!! TTTTTGCTTATATTTTGAGA+CGG - chr1_3:13549293-13549312 None:intergenic 20.0%
!! AATTATGATTATTATTAGGC+GGG - chr1_3:13549922-13549941 None:intergenic 20.0%
!! CAATTATGATTATTATTAGG+CGG - chr1_3:13549923-13549942 None:intergenic 20.0%
!! CACCAATTATGATTATTATT+AGG - chr1_3:13549926-13549945 None:intergenic 20.0%
!! TTGGAATAATAATCTTCTTT+GGG - chr1_3:13550685-13550704 None:intergenic 20.0%
!!! TTTGGAATAATAATCTTCTT+TGG - chr1_3:13550686-13550705 None:intergenic 20.0%
!!! GAATTTTATAGAGAATATCA+AGG + chr1_3:13550807-13550826 Msa0105190:CDS 20.0%
!! TAGATAAAGTTAGCAAAAAA+GGG - chr1_3:13550843-13550862 None:intergenic 20.0%
!! ATTAATAAAATGCAACTTAC+TGG + chr1_3:13550966-13550985 Msa0105190:intron 20.0%
!! CTAGAATATATACAAATTAG+GGG + chr1_3:13550993-13551012 Msa0105190:intron 20.0%
!! TTCCAAAATCCAAAAAAATA+CGG + chr1_3:13551240-13551259 Msa0105190:CDS 20.0%
!!! ATCGATCATATTTTTTAGTT+AGG + chr1_3:13551276-13551295 Msa0105190:intron 20.0%
!!! TCGATCATATTTTTTAGTTA+GGG + chr1_3:13551277-13551296 Msa0105190:intron 20.0%
!!! TTTTTTAGTTAGGGTATATT+TGG + chr1_3:13551286-13551305 Msa0105190:intron 20.0%
!!! GAAATTTTCAGGAGTTTAAT+TGG + chr1_3:13542943-13542962 Msa0105190:intron 25.0%
!! TGCTGAGTGTAATATATTTT+TGG + chr1_3:13542970-13542989 Msa0105190:intron 25.0%
! ACCAAAGATTCAATACATAA+GGG - chr1_3:13543072-13543091 None:intergenic 25.0%
! TACCAAAGATTCAATACATA+AGG - chr1_3:13543073-13543092 None:intergenic 25.0%
! AAAAACTTGAAACAAACAAC+TGG + chr1_3:13543439-13543458 Msa0105190:intron 25.0%
! ATAGTTATACATACACGTTT+AGG - chr1_3:13543545-13543564 None:intergenic 25.0%
! TTGTGAATAATTGAAGGTTT+AGG - chr1_3:13543752-13543771 None:intergenic 25.0%
! CAAAAAATCAGACATTAAAC+TGG + chr1_3:13543769-13543788 Msa0105190:intron 25.0%
! ATTTGACTATAGTTTCATAG+TGG - chr1_3:13543821-13543840 None:intergenic 25.0%
!!! CAATCACTAATTTTTTAGGT+TGG - chr1_3:13544636-13544655 None:intergenic 25.0%
!!! CTTGCAATCACTAATTTTTT+AGG - chr1_3:13544640-13544659 None:intergenic 25.0%
! CAGAACAAAAATTTCGTTTA+AGG + chr1_3:13544785-13544804 Msa0105190:intron 25.0%
!!! ATTTAAGACCCACTTTTTTA+GGG - chr1_3:13544981-13545000 None:intergenic 25.0%
!!! AATTTAAGACCCACTTTTTT+AGG - chr1_3:13544982-13545001 None:intergenic 25.0%
! ATTCAGGACATATACAATTT+GGG + chr1_3:13545049-13545068 Msa0105190:intron 25.0%
! AATACACAAAAATATAAGGG+AGG - chr1_3:13545117-13545136 None:intergenic 25.0%
! TGAATTATTCATTGATATGC+AGG + chr1_3:13545424-13545443 Msa0105190:intron 25.0%
!! AATGGTACTCAAATTTTTGT+AGG + chr1_3:13545535-13545554 Msa0105190:CDS 25.0%
!!! ATATTTTGATGGAATTTCTG+TGG - chr1_3:13545693-13545712 None:intergenic 25.0%
!! AATAAAGTGTTCTTCTACAT+TGG + chr1_3:13545755-13545774 Msa0105190:intron 25.0%
!! ATAAAGTGTTCTTCTACATT+GGG + chr1_3:13545756-13545775 Msa0105190:intron 25.0%
! GATATTATTGGGTATGAAAT+TGG - chr1_3:13545801-13545820 None:intergenic 25.0%
!!! ATATTTTAACATAAGAGGGA+AGG + chr1_3:13545847-13545866 Msa0105190:intron 25.0%
!!! CATAATTCAAGCTTTTTTGT+AGG + chr1_3:13545874-13545893 Msa0105190:intron 25.0%
! AATGACTACACTCTATATAA+GGG - chr1_3:13546058-13546077 None:intergenic 25.0%
!! AAAAAGTGATCAATTTTCGT+CGG - chr1_3:13546428-13546447 None:intergenic 25.0%
! AAAAACAAGAAGAGAAATAG+AGG + chr1_3:13546471-13546490 Msa0105190:intron 25.0%
! AAAACAAGAAGAGAAATAGA+GGG + chr1_3:13546472-13546491 Msa0105190:intron 25.0%
! AGGTATTTATAGGTAGAAAT+GGG + chr1_3:13546551-13546570 Msa0105190:intron 25.0%
! ATTTATGGTAGTTACAACAT+AGG - chr1_3:13546579-13546598 None:intergenic 25.0%
! TGTTGTAACTACCATAAATA+TGG + chr1_3:13546580-13546599 Msa0105190:intron 25.0%
!!! TAAAGTTTGTTAAAAACGTG+TGG + chr1_3:13546616-13546635 Msa0105190:intron 25.0%
!!! CTATTTTAATCAATTCGACA+AGG + chr1_3:13547256-13547275 Msa0105190:intron 25.0%
!!! GAAGAAATTTTTTTTACAGG+AGG + chr1_3:13547475-13547494 Msa0105190:intron 25.0%
!!! CTGTAATATAGGTCATTTTT+GGG - chr1_3:13547534-13547553 None:intergenic 25.0%
! CAAAAATGACCTATATTACA+GGG + chr1_3:13547533-13547552 Msa0105190:intron 25.0%
! AAAAATGACCTATATTACAG+GGG + chr1_3:13547534-13547553 Msa0105190:intron 25.0%
! CACTACTCTTAATAATATAC+CGG - chr1_3:13548028-13548047 None:intergenic 25.0%
!! TTCTTTTTCTCTCTTTCTAT+TGG + chr1_3:13548087-13548106 Msa0105190:intron 25.0%
! TGATCATATGATAATTCCAT+AGG + chr1_3:13548261-13548280 Msa0105190:intron 25.0%
! ATTCTTTGTAGCAAATATTG+GGG - chr1_3:13548383-13548402 None:intergenic 25.0%
! CAATTCTTTGTAGCAAATAT+TGG - chr1_3:13548385-13548404 None:intergenic 25.0%
!! TTTCCTGCAATATTTAACTT+TGG + chr1_3:13548409-13548428 Msa0105190:CDS 25.0%
!!! ACTTTTTTCAATAGATCAAC+TGG + chr1_3:13548499-13548518 Msa0105190:CDS 25.0%
! CTATGAAATCAAGAATGATT+CGG - chr1_3:13548540-13548559 None:intergenic 25.0%
! CATTTCCTCAAAAAACAAAA+AGG + chr1_3:13549070-13549089 Msa0105190:intron 25.0%
! GTGGTTTAACTAAAAAACAA+TGG - chr1_3:13549226-13549245 None:intergenic 25.0%
!! ACGAATTTTTCCTTGTATTT+TGG + chr1_3:13549374-13549393 Msa0105190:intron 25.0%
!! CGAATTTTTCCTTGTATTTT+GGG + chr1_3:13549375-13549394 Msa0105190:intron 25.0%
!! GTTTTGTCGTATAAATATGA+GGG - chr1_3:13549424-13549443 None:intergenic 25.0%
!! TGTTTTGTCGTATAAATATG+AGG - chr1_3:13549425-13549444 None:intergenic 25.0%
!!! TTAGAGAACTTAAGTTGAAT+GGG - chr1_3:13549484-13549503 None:intergenic 25.0%
!!! ATTAGAGAACTTAAGTTGAA+TGG - chr1_3:13549485-13549504 None:intergenic 25.0%
!!! ATGGTTTTTTTTTTTTGTGG+TGG + chr1_3:13549652-13549671 Msa0105190:intron 25.0%
! GACAATGCATAATATATACA+AGG - chr1_3:13549697-13549716 None:intergenic 25.0%
! CGCCTAATAATAATCATAAT+TGG + chr1_3:13549921-13549940 Msa0105190:intron 25.0%
! TTTGTGCTGAAGAAAAAAAA+TGG - chr1_3:13550310-13550329 None:intergenic 25.0%
! TTGATTGTACTGAATTTGAA+GGG - chr1_3:13550471-13550490 None:intergenic 25.0%
! ATTGATTGTACTGAATTTGA+AGG - chr1_3:13550472-13550491 None:intergenic 25.0%
!! TCTCTAATGAATTTTGCTTT+TGG - chr1_3:13550509-13550528 None:intergenic 25.0%
!! AATTTCAAAATTTTCTTGCC+AGG + chr1_3:13550637-13550656 Msa0105190:intron 25.0%
! TGGAATAATAATCTTCTTTG+GGG - chr1_3:13550684-13550703 None:intergenic 25.0%
! ACCAATATCAAATGTGTATA+AGG - chr1_3:13550710-13550729 None:intergenic 25.0%
! GTAGATAAAGTTAGCAAAAA+AGG - chr1_3:13550844-13550863 None:intergenic 25.0%
! GGAGAAATCATAAACATAAA+TGG + chr1_3:13551463-13551482 Msa0105190:CDS 25.0%
! AACCATCTACTAGAATAATA+TGG + chr1_3:13551515-13551534 Msa0105190:CDS 25.0%
! ACCATCTACTAGAATAATAT+GGG + chr1_3:13551516-13551535 Msa0105190:CDS 25.0%
! AAAATAACTGTGTTAAATCG+TGG + chr1_3:13551679-13551698 Msa0105190:three_prime_UTR 25.0%
CAATGAAATCGACAATTAGA+CGG - chr1_3:13542826-13542845 None:intergenic 30.0%
! ATGTACATGATTGAGCTTTT+AGG + chr1_3:13542877-13542896 Msa0105190:intron 30.0%
TTCTACTTCTACATGTTAGA+AGG + chr1_3:13542916-13542935 Msa0105190:intron 30.0%
!!! TTTTGGCTTAATTGCACTTT+TGG + chr1_3:13542987-13543006 Msa0105190:intron 30.0%
!! TCGTAACTTTTGGAAAGATA+GGG - chr1_3:13543014-13543033 None:intergenic 30.0%
!! ATCGTAACTTTTGGAAAGAT+AGG - chr1_3:13543015-13543034 None:intergenic 30.0%
! CTTTCCAAAAGTTACGATTT+TGG + chr1_3:13543017-13543036 Msa0105190:intron 30.0%
CCAAAGATTCAATACATAAG+GGG - chr1_3:13543071-13543090 None:intergenic 30.0%
!!! TGCCACGTGTAAATTTTTTA+TGG + chr1_3:13543161-13543180 Msa0105190:intron 30.0%
!!! GCCACGTGTAAATTTTTTAT+GGG + chr1_3:13543162-13543181 Msa0105190:intron 30.0%
ACCCATAAAAAATTTACACG+TGG - chr1_3:13543166-13543185 None:intergenic 30.0%
!! TTACCATTACCAATTTTGAC+TGG - chr1_3:13543205-13543224 None:intergenic 30.0%
GACATGTGAATTTCATTGAT+GGG + chr1_3:13543699-13543718 Msa0105190:intron 30.0%
CATAATTCAATCAGTTGAAC+CGG + chr1_3:13543875-13543894 Msa0105190:intron 30.0%
GTTGCAAGAGACATATAATT+CGG - chr1_3:13543977-13543996 None:intergenic 30.0%
! GTAATTTCAGCTCAAAGTTT+TGG + chr1_3:13544061-13544080 Msa0105190:intron 30.0%
AATCTCTGAATTGAGTGTAT+TGG - chr1_3:13544228-13544247 None:intergenic 30.0%
TGTCTAATGAATTGTGTTCT+AGG - chr1_3:13544256-13544275 None:intergenic 30.0%
ACACAATTCATTAGACAACA+AGG + chr1_3:13544259-13544278 Msa0105190:CDS 30.0%
GGTCCTTAATAATAAAGACA+TGG + chr1_3:13544331-13544350 Msa0105190:intron 30.0%
AAAGACATGGTTTACTTTGT+AGG + chr1_3:13544344-13544363 Msa0105190:intron 30.0%
TTAGAGAAATACTCTTCCTT+GGG - chr1_3:13544392-13544411 None:intergenic 30.0%
GCTTTGTACACATTTGATAT+TGG + chr1_3:13544413-13544432 Msa0105190:CDS 30.0%
GATATTGGTCAAAATGATCT+TGG + chr1_3:13544428-13544447 Msa0105190:CDS 30.0%
! GAGAAACTATTGATTATCTC+TGG - chr1_3:13544503-13544522 None:intergenic 30.0%
AATACAAAATAAGTGGGTGT+AGG - chr1_3:13544889-13544908 None:intergenic 30.0%
ATATAGTAAGTTACACCTTG+TGG - chr1_3:13544953-13544972 None:intergenic 30.0%
!!! TTTAAGACCCACTTTTTTAG+GGG - chr1_3:13544980-13544999 None:intergenic 30.0%
TTGATCTCATTTGATGAACT+TGG + chr1_3:13545024-13545043 Msa0105190:intron 30.0%
GATTCAGGACATATACAATT+TGG + chr1_3:13545048-13545067 Msa0105190:intron 30.0%
! GTATTTTCCATTAGCTGAAA+AGG + chr1_3:13545132-13545151 Msa0105190:intron 30.0%
! TTTTCATCCTTTTCAGCTAA+TGG - chr1_3:13545142-13545161 None:intergenic 30.0%
TTAGCTGAAAAGGATGAAAA+TGG + chr1_3:13545142-13545161 Msa0105190:intron 30.0%
TATAATTACAGCAGTAGTGT+TGG + chr1_3:13545490-13545509 Msa0105190:CDS 30.0%
! ATTTTCCATGAAATTTCCAC+TGG + chr1_3:13545628-13545647 Msa0105190:intron 30.0%
! GAAATTGGCATTGAAATCAT+AGG - chr1_3:13545786-13545805 None:intergenic 30.0%
CAATGACTACACTCTATATA+AGG - chr1_3:13546059-13546078 None:intergenic 30.0%
CGTTACAATTTACAATGATG+AGG + chr1_3:13546081-13546100 Msa0105190:intron 30.0%
ACAGATTTAAATTTAGCCCA+AGG + chr1_3:13546358-13546377 Msa0105190:intron 30.0%
CAGATTTAAATTTAGCCCAA+GGG + chr1_3:13546359-13546378 Msa0105190:intron 30.0%
AAAATACATCATCAACCCTT+GGG - chr1_3:13546377-13546396 None:intergenic 30.0%
! AAAAGTGATCAATTTTCGTC+GGG - chr1_3:13546427-13546446 None:intergenic 30.0%
!! AAGTATGGAGAGGTATTTAT+AGG + chr1_3:13546541-13546560 Msa0105190:intron 30.0%
! GAGGTATTTATAGGTAGAAA+TGG + chr1_3:13546550-13546569 Msa0105190:intron 30.0%
TAATGGTCCAATGATGAATT+TGG + chr1_3:13546909-13546928 Msa0105190:intron 30.0%
TAAACAGCCAAATTCATCAT+TGG - chr1_3:13546919-13546938 None:intergenic 30.0%
TGATGAATTTGGCTGTTTAA+TGG + chr1_3:13546920-13546939 Msa0105190:intron 30.0%
GATGAATTTGGCTGTTTAAT+GGG + chr1_3:13546921-13546940 Msa0105190:intron 30.0%
TCGAGTAAAATGATATTGAG+CGG - chr1_3:13547029-13547048 None:intergenic 30.0%
TCAATTCGACAAGGTTTAAT+AGG + chr1_3:13547265-13547284 Msa0105190:intron 30.0%
! AGGTTTAATAGGTGATGTTT+TGG + chr1_3:13547276-13547295 Msa0105190:intron 30.0%
!!! TCGTTTTTTTATGGCCTATT+AGG + chr1_3:13547443-13547462 Msa0105190:intron 30.0%
!!! CGTTTTTTTATGGCCTATTA+GGG + chr1_3:13547444-13547463 Msa0105190:intron 30.0%
!!! GTTTTTTTATGGCCTATTAG+GGG + chr1_3:13547445-13547464 Msa0105190:intron 30.0%
!!! TTTTTTTATGGCCTATTAGG+GGG + chr1_3:13547446-13547465 Msa0105190:intron 30.0%
!! CCTGTAATATAGGTCATTTT+TGG - chr1_3:13547535-13547554 None:intergenic 30.0%
CCAAAAATGACCTATATTAC+AGG + chr1_3:13547532-13547551 Msa0105190:intron 30.0%
AAAATGACCTATATTACAGG+GGG + chr1_3:13547535-13547554 Msa0105190:intron 30.0%
!! TTAGCATTGAGATACACTTT+TGG + chr1_3:13547690-13547709 Msa0105190:intron 30.0%
!! TGTTTTTAAGAGACATTTGC+AGG + chr1_3:13547780-13547799 Msa0105190:intron 30.0%
GTCATGATAGTTGTCAAAAA+TGG - chr1_3:13548063-13548082 None:intergenic 30.0%
GTGCTTCATCAATAATTTCA+TGG + chr1_3:13548291-13548310 Msa0105190:intron 30.0%
TTCTTTGTAGCAAATATTGG+GGG - chr1_3:13548382-13548401 None:intergenic 30.0%
TTGAAAAAAGTCTCTCCATT+TGG - chr1_3:13548490-13548509 None:intergenic 30.0%
CGAATCATTCTTGATTTCAT+AGG + chr1_3:13548538-13548557 Msa0105190:CDS 30.0%
!! TGTTCATCACTTTTGAAAAG+TGG + chr1_3:13548618-13548637 Msa0105190:intron 30.0%
CATTCAAACAACTATTTGTG+TGG + chr1_3:13548691-13548710 Msa0105190:intron 30.0%
!! TTTTAAGAAAATAGGGGTGA+GGG - chr1_3:13548957-13548976 None:intergenic 30.0%
!! TTTTTAAGAAAATAGGGGTG+AGG - chr1_3:13548958-13548977 None:intergenic 30.0%
!! AGTCATCATTTCTTTTTCGT+TGG + chr1_3:13549024-13549043 Msa0105190:intron 30.0%
!!! CCAAACCTTTTTGTTTTTTG+AGG - chr1_3:13549078-13549097 None:intergenic 30.0%
CCTCAAAAAACAAAAAGGTT+TGG + chr1_3:13549075-13549094 Msa0105190:intron 30.0%
!! GTTTGATGATGTATCTTCTA+CGG - chr1_3:13549136-13549155 None:intergenic 30.0%
! CTAGTATTCGTGTATTGATA+AGG - chr1_3:13549167-13549186 None:intergenic 30.0%
GTTCTCTAATGAGAGAAATA+CGG + chr1_3:13549495-13549514 Msa0105190:intron 30.0%
AGAAACGTATTTCTCTCATT+AGG - chr1_3:13549554-13549573 None:intergenic 30.0%
ATACTCTTATAGTAGATGCA+CGG - chr1_3:13549595-13549614 None:intergenic 30.0%
!!! TTTTTTTTTTTTGTGGTGGC+TGG + chr1_3:13549656-13549675 Msa0105190:intron 30.0%
!!! TTTTTTTTTTTGTGGTGGCT+GGG + chr1_3:13549657-13549676 Msa0105190:intron 30.0%
CATAATATATACAAGGTCCA+GGG - chr1_3:13549690-13549709 None:intergenic 30.0%
TGTTAAATAAGAAGCTCACA+TGG + chr1_3:13550199-13550218 Msa0105190:intron 30.0%
TTAAGATATGGACTTAGGTA+GGG - chr1_3:13550344-13550363 None:intergenic 30.0%
ATTAAGATATGGACTTAGGT+AGG - chr1_3:13550345-13550364 None:intergenic 30.0%
GAGAATTAAGATATGGACTT+AGG - chr1_3:13550349-13550368 None:intergenic 30.0%
AGTCCATATCTTAATTCTCT+AGG + chr1_3:13550350-13550369 Msa0105190:CDS 30.0%
GATCCTAGAGAATTAAGATA+TGG - chr1_3:13550356-13550375 None:intergenic 30.0%
CCATTGGGTATAATACTATT+AGG - chr1_3:13550431-13550450 None:intergenic 30.0%
CCTAATAGTATTATACCCAA+TGG + chr1_3:13550428-13550447 Msa0105190:CDS 30.0%
!! AATGGACTAAACATTCCATT+GGG - chr1_3:13550446-13550465 None:intergenic 30.0%
!! AAATGGACTAAACATTCCAT+TGG - chr1_3:13550447-13550466 None:intergenic 30.0%
TACTGAATTTGAAGGGAAAA+TGG - chr1_3:13550464-13550483 None:intergenic 30.0%
GCAAAATTCATTAGAGATCA+AGG + chr1_3:13550512-13550531 Msa0105190:CDS 30.0%
ATCAAATGTGTATAAGGCTT+TGG - chr1_3:13550704-13550723 None:intergenic 30.0%
GCCTTATACACATTTGATAT+TGG + chr1_3:13550706-13550725 Msa0105190:CDS 30.0%
GGAAAATTGGCCAAAATTAA+AGG - chr1_3:13551063-13551082 None:intergenic 30.0%
CTTTATAGCAGATGGAAAAT+TGG - chr1_3:13551076-13551095 None:intergenic 30.0%
! CAATTTTCCATCTGCTATAA+AGG + chr1_3:13551074-13551093 Msa0105190:CDS 30.0%
!!! TTTTGGAAAAGAGAGTACTT+AGG - chr1_3:13551228-13551247 None:intergenic 30.0%
!!! CACCGTATTTTTTTGGATTT+TGG - chr1_3:13551245-13551264 None:intergenic 30.0%
!!! TTTGTCTCACCGTATTTTTT+TGG - chr1_3:13551252-13551271 None:intergenic 30.0%
AAATGGTACAAACATTGTTG+TGG + chr1_3:13551480-13551499 Msa0105190:CDS 30.0%
AATGGTACAAACATTGTTGT+GGG + chr1_3:13551481-13551500 Msa0105190:CDS 30.0%
TCCCATATTATTCTAGTAGA+TGG - chr1_3:13551520-13551539 None:intergenic 30.0%
TCTACTAGAATAATATGGGA+TGG + chr1_3:13551520-13551539 Msa0105190:CDS 30.0%
!! ATTGCTACTTTCAATCACTG+TGG - chr1_3:13542663-13542682 None:intergenic 35.0%
AAATAAGTCTCTCCATATGG+TGG - chr1_3:13542773-13542792 None:intergenic 35.0%
TGGAAATAAGTCTCTCCATA+TGG - chr1_3:13542776-13542795 None:intergenic 35.0%
ACTTATTTCCACAGACCTAA+TGG + chr1_3:13542785-13542804 Msa0105190:CDS 35.0%
CTTATTTCCACAGACCTAAT+GGG + chr1_3:13542786-13542805 Msa0105190:CDS 35.0%
!! CGTCTAATTGTCGATTTCAT+TGG + chr1_3:13542824-13542843 Msa0105190:CDS 35.0%
ACTTCTACATGTTAGAAGGT+TGG + chr1_3:13542920-13542939 Msa0105190:intron 35.0%
CTTCTACATGTTAGAAGGTT+GGG + chr1_3:13542921-13542940 Msa0105190:intron 35.0%
! TAGAAGGTTGGGAAATTTTC+AGG + chr1_3:13542932-13542951 Msa0105190:intron 35.0%
!! CGTAACTTTTGGAAAGATAG+GGG - chr1_3:13543013-13543032 None:intergenic 35.0%
CCCCTTATGTATTGAATCTT+TGG + chr1_3:13543068-13543087 Msa0105190:intron 35.0%
!! ACCAAGTCAAAATTGGTCTT+GGG - chr1_3:13543105-13543124 None:intergenic 35.0%
AGACCAGTCAAAATTGGTAA+TGG + chr1_3:13543199-13543218 Msa0105190:intron 35.0%
!! AGTTAGTCCAGTTGATAAGA+AGG + chr1_3:13543633-13543652 Msa0105190:intron 35.0%
GTTGAACTCAAACATTTACG+AGG - chr1_3:13543669-13543688 None:intergenic 35.0%
CGACATGTGAATTTCATTGA+TGG + chr1_3:13543698-13543717 Msa0105190:intron 35.0%
! GTTAATTTGGTACTGCCAAA+AGG - chr1_3:13543947-13543966 None:intergenic 35.0%
ATTCGGACCAAGAGTTAATT+TGG - chr1_3:13543960-13543979 None:intergenic 35.0%
CAAGATATGCGCTTAGATAA+GGG - chr1_3:13544090-13544109 None:intergenic 35.0%
TCAAGATATGCGCTTAGATA+AGG - chr1_3:13544091-13544110 None:intergenic 35.0%
AAGCGCATATCTTGATTCTT+TGG + chr1_3:13544096-13544115 Msa0105190:CDS 35.0%
AGCGCATATCTTGATTCTTT+GGG + chr1_3:13544097-13544116 Msa0105190:CDS 35.0%
GTTTGCACCATGTGAAAAAT+TGG - chr1_3:13544125-13544144 None:intergenic 35.0%
TATTGGACATCAAGGTAGAA+AGG - chr1_3:13544211-13544230 None:intergenic 35.0%
ATTGAGTGTATTGGACATCA+AGG - chr1_3:13544219-13544238 None:intergenic 35.0%
CTTAGAGAAATACTCTTCCT+TGG - chr1_3:13544393-13544412 None:intergenic 35.0%
!! CAAGGAAGAGTATTTCTCTA+AGG + chr1_3:13544391-13544410 Msa0105190:CDS 35.0%
!!! GTTTTTGGAACATGACAATC+TGG + chr1_3:13544752-13544771 Msa0105190:intron 35.0%
CAGCATAAGACAAACTTGTA+TGG - chr1_3:13544828-13544847 None:intergenic 35.0%
ATATACACCCCCTAAAAAAG+TGG + chr1_3:13544969-13544988 Msa0105190:intron 35.0%
TATACACCCCCTAAAAAAGT+GGG + chr1_3:13544970-13544989 Msa0105190:intron 35.0%
!!! TTAAGACCCACTTTTTTAGG+GGG - chr1_3:13544979-13544998 None:intergenic 35.0%
! TTTGATGAACTTGGTGATTC+AGG + chr1_3:13545033-13545052 Msa0105190:intron 35.0%
! ATTTGGGTGCTAGATCATTT+TGG + chr1_3:13545065-13545084 Msa0105190:intron 35.0%
! TCATTTTGGATACACAACAC+AGG + chr1_3:13545079-13545098 Msa0105190:intron 35.0%
ACATATGTGATTGCAGCTAA+AGG - chr1_3:13545250-13545269 None:intergenic 35.0%
ATAGCCACAACAAACAACTA+GGG - chr1_3:13545461-13545480 None:intergenic 35.0%
ACCATCTTCAAGAGTGAATT+GGG + chr1_3:13545570-13545589 Msa0105190:CDS 35.0%
!!! AAGCTTTTTTGTAGGACAGA+TGG + chr1_3:13545882-13545901 Msa0105190:intron 35.0%
CAGGTCGGATCATATATATA+GGG - chr1_3:13545917-13545936 None:intergenic 35.0%
TCAGGTCGGATCATATATAT+AGG - chr1_3:13545918-13545937 None:intergenic 35.0%
CAAAATACCAACTTCAGCAT+TGG - chr1_3:13546021-13546040 None:intergenic 35.0%
CAATTTACAATGATGAGGAG+CGG + chr1_3:13546086-13546105 Msa0105190:intron 35.0%
! CAAGAAGTTCTTTTTACCCA+CGG - chr1_3:13546326-13546345 None:intergenic 35.0%
TGGGTAAAAAGAACTTCTTG+TGG + chr1_3:13546326-13546345 Msa0105190:intron 35.0%
GAAAATACATCATCAACCCT+TGG - chr1_3:13546378-13546397 None:intergenic 35.0%
! ATGATGTATTTTCCCCAAGA+AGG + chr1_3:13546385-13546404 Msa0105190:intron 35.0%
! AAAGTGATCAATTTTCGTCG+GGG - chr1_3:13546426-13546445 None:intergenic 35.0%
TGAGATGGTGTGAAGAATTA+GGG + chr1_3:13546518-13546537 Msa0105190:intron 35.0%
TGTGAAGAATTAGGGAAGTA+TGG + chr1_3:13546526-13546545 Msa0105190:intron 35.0%
! GTTAAAAACGTGTGGATTGA+AGG + chr1_3:13546624-13546643 Msa0105190:intron 35.0%
! AACTAACGCAAGGGTATATT+TGG + chr1_3:13546805-13546824 Msa0105190:intron 35.0%
! TATTTTACAGGGAGTAAACC+TGG - chr1_3:13547513-13547532 None:intergenic 35.0%
! TTTTTGTATGGCCTATTAGG+GGG - chr1_3:13547394-13547413 None:intergenic 35.0%
! GTTTTTGTATGGCCTATTAG+GGG - chr1_3:13547395-13547414 None:intergenic 35.0%
! GGTTTTTGTATGGCCTATTA+GGG - chr1_3:13547396-13547415 None:intergenic 35.0%
! TGGTTTTTGTATGGCCTATT+AGG - chr1_3:13547397-13547416 None:intergenic 35.0%
! TGTTTTACCCCCTGTAATAT+AGG - chr1_3:13547545-13547564 None:intergenic 35.0%
ACAAATTGGGACATTCATTG+TGG - chr1_3:13547763-13547782 None:intergenic 35.0%
AATACAATCCCCAGAAAGAA+AGG + chr1_3:13547823-13547842 Msa0105190:intron 35.0%
! ATAGCCTTTCTTGTTTGACT+GGG - chr1_3:13547970-13547989 None:intergenic 35.0%
! AATAGCCTTTCTTGTTTGAC+TGG - chr1_3:13547971-13547990 None:intergenic 35.0%
TCTACTTTGATATCTCGATC+CGG + chr1_3:13548006-13548025 Msa0105190:intron 35.0%
ATGAAGCACAAATGAACCTA+TGG - chr1_3:13548280-13548299 None:intergenic 35.0%
TGGCACAAATAGAGTTTCTT+AGG + chr1_3:13548311-13548330 Msa0105190:intron 35.0%
GCACCAAAGTTAAATATTGC+AGG - chr1_3:13548415-13548434 None:intergenic 35.0%
! TCAACTGGAAGATTTTCTGA+TGG + chr1_3:13548514-13548533 Msa0105190:CDS 35.0%
GATAAAACATGATCATGTGC+TGG - chr1_3:13548861-13548880 None:intergenic 35.0%
!!! TTTTTTTTTTGTGGTGGCTG+GGG + chr1_3:13549658-13549677 Msa0105190:intron 35.0%
GCATAATATATACAAGGTCC+AGG - chr1_3:13549691-13549710 None:intergenic 35.0%
! CTGCTGATATCTTTGTGTTT+TGG - chr1_3:13549949-13549968 None:intergenic 35.0%
CAAAACACAAAGATATCAGC+AGG + chr1_3:13549947-13549966 Msa0105190:intron 35.0%
ACACTATATAGAAGCTCACA+TGG + chr1_3:13550234-13550253 Msa0105190:intron 35.0%
! TTTTCTTCAGCACAAAGCTT+TGG + chr1_3:13550314-13550333 Msa0105190:intron 35.0%
! TTCAAAATTTTCTTGCCAGG+AGG + chr1_3:13550640-13550659 Msa0105190:intron 35.0%
!!! GATCTTACTGCTGGTTTTTT+TGG + chr1_3:13550736-13550755 Msa0105190:CDS 35.0%
ATATATACAAATTAGGGGCC+AGG + chr1_3:13550998-13551017 Msa0105190:CDS 35.0%
! TCATTTTGGATACACAACAC+TGG + chr1_3:13545079-13545098 Msa0105190:intron 35.0%
! ATTAAAGGCACACATCCAAT+TGG - chr1_3:13551048-13551067 None:intergenic 35.0%
!! TGGATGTGTGCCTTTAATTT+TGG + chr1_3:13551050-13551069 Msa0105190:CDS 35.0%
GTTAGGGTATATTTGGATTG+TGG + chr1_3:13551293-13551312 Msa0105190:intron 35.0%
TATAACATTCGTGCTAGATG+TGG + chr1_3:13551442-13551461 Msa0105190:CDS 35.0%
GTCTTTGATCAAATCTCTAC+TGG + chr1_3:13551574-13551593 Msa0105190:CDS 35.0%
TTGTAACATGCCCTATTTAG+TGG - chr1_3:13551622-13551641 None:intergenic 35.0%
TTCCCTGCAATCTTCAACTT+TGG + chr1_3:13542695-13542714 Msa0105190:CDS 40.0%
CACCAAAGTTGAAGATTGCA+GGG - chr1_3:13542700-13542719 None:intergenic 40.0%
TCACCAAAGTTGAAGATTGC+AGG - chr1_3:13542701-13542720 None:intergenic 40.0%
! GGGACCAAAATCGTAACTTT+TGG - chr1_3:13543024-13543043 None:intergenic 40.0%
!! CAAGTCAAAATTGGTCTTGG+GGG - chr1_3:13543103-13543122 None:intergenic 40.0%
!! CCAAGTCAAAATTGGTCTTG+GGG - chr1_3:13543104-13543123 None:intergenic 40.0%
! GACCAAGTCAAAATTGGTCT+TGG - chr1_3:13543106-13543125 None:intergenic 40.0%
AGCGAAGACCAAGTCAAAAT+TGG - chr1_3:13543112-13543131 None:intergenic 40.0%
TGAGTCACCTTCTTATCAAC+TGG - chr1_3:13543643-13543662 None:intergenic 40.0%
GGCAGTACCAAATTAACTCT+TGG + chr1_3:13543950-13543969 Msa0105190:intron 40.0%
GCGCATATCTTGATTCTTTG+GGG + chr1_3:13544098-13544117 Msa0105190:CDS 40.0%
! TTGGGGACCAATTTTTCACA+TGG + chr1_3:13544115-13544134 Msa0105190:CDS 40.0%
TGAGGTATAATACTAGGTGG+GGG - chr1_3:13544175-13544194 None:intergenic 40.0%
CTGAGGTATAATACTAGGTG+GGG - chr1_3:13544176-13544195 None:intergenic 40.0%
CCTGAGGTATAATACTAGGT+GGG - chr1_3:13544177-13544196 None:intergenic 40.0%
CCACCTAGTATTATACCTCA+GGG + chr1_3:13544175-13544194 Msa0105190:CDS 40.0%
GACATGGTTTACTTTGTAGG+AGG + chr1_3:13544347-13544366 Msa0105190:intron 40.0%
ACATGACAATCTGGAGACAA+TGG + chr1_3:13544761-13544780 Msa0105190:intron 40.0%
TAGCCACAACAAACAACTAG+GGG - chr1_3:13545460-13545479 None:intergenic 40.0%
CATAGCCACAACAAACAACT+AGG - chr1_3:13545462-13545481 None:intergenic 40.0%
!! CTAGTTGTTTGTTGTGGCTA+TGG + chr1_3:13545460-13545479 Msa0105190:CDS 40.0%
TTGAGTACCATTGACCTCTA+TGG - chr1_3:13545527-13545546 None:intergenic 40.0%
GACCATCTTCAAGAGTGAAT+TGG + chr1_3:13545569-13545588 Msa0105190:CDS 40.0%
TCCCAATTCACTCTTGAAGA+TGG - chr1_3:13545574-13545593 None:intergenic 40.0%
TCTTCAAGAGTGAATTGGGA+TGG + chr1_3:13545574-13545593 Msa0105190:CDS 40.0%
AAGCTCCAGTGGAAATTTCA+TGG - chr1_3:13545636-13545655 None:intergenic 40.0%
TCCATCCATTCCCTTGAATA+TGG + chr1_3:13545663-13545682 Msa0105190:intron 40.0%
!! AGTTGTTTTGCTGATCAGGT+CGG - chr1_3:13545932-13545951 None:intergenic 40.0%
!! TGGAAGTTGTTTTGCTGATC+AGG - chr1_3:13545936-13545955 None:intergenic 40.0%
CAGCAAAACAACTTCCAATG+CGG + chr1_3:13545939-13545958 Msa0105190:intron 40.0%
AGTTGTTGTCCTTGTAAGGT+TGG + chr1_3:13545964-13545983 Msa0105190:intron 40.0%
CTCATTGTTCCAACCTTACA+AGG - chr1_3:13545976-13545995 None:intergenic 40.0%
TGTAAGGTTGGAACAATGAG+AGG + chr1_3:13545976-13545995 Msa0105190:intron 40.0%
AGCAAAATTCAAGGGAAAGC+TGG - chr1_3:13546151-13546170 None:intergenic 40.0%
AATGCGCATGTTAAGTAACG+TGG + chr1_3:13546252-13546271 Msa0105190:intron 40.0%
AAATAGTGAGCAGCCTTCTT+GGG - chr1_3:13546401-13546420 None:intergenic 40.0%
AAAATAGTGAGCAGCCTTCT+TGG - chr1_3:13546402-13546421 None:intergenic 40.0%
GTGAGATGGTGTGAAGAATT+AGG + chr1_3:13546517-13546536 Msa0105190:intron 40.0%
! AGAATTAGGGAAGTATGGAG+AGG + chr1_3:13546531-13546550 Msa0105190:intron 40.0%
! AGAACACACGTTTTTGTGGA+CGG - chr1_3:13546665-13546684 None:intergenic 40.0%
GTATATTTGGAAGCAGTGCA+GGG + chr1_3:13546818-13546837 Msa0105190:intron 40.0%
GCAAAATTCCTTTCCCTTTG+TGG + chr1_3:13546867-13546886 Msa0105190:intron 40.0%
TCATCATTGGACCATTACTG+CGG - chr1_3:13546906-13546925 None:intergenic 40.0%
AGATTCGTCAAGATGAACGA+TGG - chr1_3:13547169-13547188 None:intergenic 40.0%
TTCCAAAATACCCCCCTAAT+AGG + chr1_3:13547380-13547399 Msa0105190:intron 40.0%
! TTTTGTATGGCCTATTAGGG+GGG - chr1_3:13547393-13547412 None:intergenic 40.0%
TCTTCAGATTACCCCCTAAT+AGG - chr1_3:13547460-13547479 None:intergenic 40.0%
TGTGTTGTCCTTTCTTTCTG+GGG - chr1_3:13547834-13547853 None:intergenic 40.0%
CTGTGTTGTCCTTTCTTTCT+GGG - chr1_3:13547835-13547854 None:intergenic 40.0%
GATACCCAGTCAAACAAGAA+AGG + chr1_3:13547963-13547982 Msa0105190:intron 40.0%
AAATGCTGATACTGGTGGTT+TGG + chr1_3:13548438-13548457 Msa0105190:CDS 40.0%
GATCTCTTATCGTAGATGCA+TGG + chr1_3:13548713-13548732 Msa0105190:intron 40.0%
!!! TCCTTGTATTTTGGGACTGA+TGG + chr1_3:13549383-13549402 Msa0105190:intron 40.0%
TCCATCAGTCCCAAAATACA+AGG - chr1_3:13549387-13549406 None:intergenic 40.0%
GTGCGTGCAACTATAATCTT+TGG + chr1_3:13549450-13549469 Msa0105190:intron 40.0%
TCTCTCATTAGGTAGATGCT+CGG - chr1_3:13549543-13549562 None:intergenic 40.0%
GATCTATCGTTACGCCATTT+AGG - chr1_3:13549754-13549773 None:intergenic 40.0%
CTAGGATCAAACTTCACACA+TGG + chr1_3:13550368-13550387 Msa0105190:CDS 40.0%
AATGTTGCAAATACACCTCC+TGG - chr1_3:13550658-13550677 None:intergenic 40.0%
GGTCAAAATGATCTTACTGC+TGG + chr1_3:13550727-13550746 Msa0105190:CDS 40.0%
GTTGTGTATCCAAAATGACC+TGG - chr1_3:13551019-13551038 None:intergenic 40.0%
ATACACAACACTGGACCAAT+TGG + chr1_3:13551030-13551049 Msa0105190:CDS 40.0%
TGGCTATCCTTTATAGCAGA+TGG - chr1_3:13551084-13551103 None:intergenic 40.0%
TCTGCTATAAAGGATAGCCA+AGG + chr1_3:13551084-13551103 Msa0105190:CDS 40.0%
TGTATTGCTTTGCACAACCT+TGG - chr1_3:13551104-13551123 None:intergenic 40.0%
ACATATGTGATTGCAGCTAG+TGG - chr1_3:13551192-13551211 None:intergenic 40.0%
ATCCTCCCATTCCACTAAAT+AGG + chr1_3:13551608-13551627 Msa0105190:CDS 40.0%
TCCTCCCATTCCACTAAATA+GGG + chr1_3:13551609-13551628 Msa0105190:CDS 40.0%
CATGCCCTATTTAGTGGAAT+GGG - chr1_3:13551616-13551635 None:intergenic 40.0%
ACATGCCCTATTTAGTGGAA+TGG - chr1_3:13551617-13551636 None:intergenic 40.0%
ATTTCCACAGACCTAATGGG+AGG + chr1_3:13542789-13542808 Msa0105190:CDS 45.0%
!!! CCCCAAGACCAATTTTGACT+TGG + chr1_3:13543101-13543120 Msa0105190:intron 45.0%
GCACCTCACTTAAGTGATGT+GGG - chr1_3:13543144-13543163 None:intergenic 45.0%
CAGCGAAGACCAGTCAAAAT+TGG + chr1_3:13543193-13543212 Msa0105190:intron 45.0%
CCCACCTAGTATTATACCTC+AGG + chr1_3:13544174-13544193 Msa0105190:CDS 45.0%
CCCTGAGGTATAATACTAGG+TGG - chr1_3:13544178-13544197 None:intergenic 45.0%
CCACCCTGAGGTATAATACT+AGG - chr1_3:13544181-13544200 None:intergenic 45.0%
CCTAGTATTATACCTCAGGG+TGG + chr1_3:13544178-13544197 Msa0105190:CDS 45.0%
ATTTGCAAGCTTGATGCCCA+AGG + chr1_3:13544373-13544392 Msa0105190:CDS 45.0%
! GGTCAAAATGATCTTGGTGC+TGG + chr1_3:13544434-13544453 Msa0105190:CDS 45.0%
!!! GATCTTGGTGCTGGCTTTTT+TGG + chr1_3:13544443-13544462 Msa0105190:CDS 45.0%
ATACACAACACAGGACCCAT+TGG + chr1_3:13545088-13545107 Msa0105190:intron 45.0%
ATATAAGGGAGGCAGCCAAT+GGG - chr1_3:13545106-13545125 None:intergenic 45.0%
AATATAAGGGAGGCAGCCAA+TGG - chr1_3:13545107-13545126 None:intergenic 45.0%
! CATCCCCTAGTTGTTTGTTG+TGG + chr1_3:13545454-13545473 Msa0105190:CDS 45.0%
!! GTTGTTTGTTGTGGCTATGG+AGG + chr1_3:13545463-13545482 Msa0105190:CDS 45.0%
! TACAGCAGTAGTGTTGGATG+TGG + chr1_3:13545496-13545515 Msa0105190:CDS 45.0%
GCCATATTCAAGGGAATGGA+TGG - chr1_3:13545667-13545686 None:intergenic 45.0%
GCATGCCATATTCAAGGGAA+TGG - chr1_3:13545671-13545690 None:intergenic 45.0%
CTGTGGCATGCCATATTCAA+GGG - chr1_3:13545676-13545695 None:intergenic 45.0%
TCTGTGGCATGCCATATTCA+AGG - chr1_3:13545677-13545696 None:intergenic 45.0%
GGTGAGTTGTTGTCCTTGTA+AGG + chr1_3:13545960-13545979 Msa0105190:intron 45.0%
AAGGTTGGAACAATGAGAGG+TGG + chr1_3:13545979-13545998 Msa0105190:intron 45.0%
AAGCACTCCAATGCTGAAGT+TGG + chr1_3:13546011-13546030 Msa0105190:intron 45.0%
GGGTGGAGAGCAAAATTCAA+GGG - chr1_3:13546159-13546178 None:intergenic 45.0%
TGGGTGGAGAGCAAAATTCA+AGG - chr1_3:13546160-13546179 None:intergenic 45.0%
! ACCGCAGAAACTTTTTACCG+TGG + chr1_3:13546306-13546325 Msa0105190:intron 45.0%
CCCACGGTAAAAAGTTTCTG+CGG - chr1_3:13546310-13546329 None:intergenic 45.0%
! CCGCAGAAACTTTTTACCGT+GGG + chr1_3:13546307-13546326 Msa0105190:intron 45.0%
AATAGTGAGCAGCCTTCTTG+GGG - chr1_3:13546400-13546419 None:intergenic 45.0%
AGAAATAGAGGGAGAGAGTG+AGG + chr1_3:13546483-13546502 Msa0105190:intron 45.0%
! CGCAAGAACACACGTTTTTG+TGG - chr1_3:13546669-13546688 None:intergenic 45.0%
TGCGTTAGTTAAGTCACGCA+TGG + chr1_3:13546744-13546763 Msa0105190:intron 45.0%
TGCGTGACTTAACTAACGCA+AGG + chr1_3:13546795-13546814 Msa0105190:intron 45.0%
GCGTGACTTAACTAACGCAA+GGG + chr1_3:13546796-13546815 Msa0105190:intron 45.0%
GGTATATTTGGAAGCAGTGC+AGG + chr1_3:13546817-13546836 Msa0105190:intron 45.0%
! TTTGGCTGTTTAATGGGCCT+TGG + chr1_3:13546927-13546946 Msa0105190:intron 45.0%
CCTGTGTTGTCCTTTCTTTC+TGG - chr1_3:13547836-13547855 None:intergenic 45.0%
CCAGAAAGAAAGGACAACAC+AGG + chr1_3:13547833-13547852 Msa0105190:intron 45.0%
GGTGCTTCAAATGCTGATAC+TGG + chr1_3:13548430-13548449 Msa0105190:CDS 45.0%
GCTTCAAATGCTGATACTGG+TGG + chr1_3:13548433-13548452 Msa0105190:CDS 45.0%
! TGGCAACTGAAGTGCTTGAA+AGG - chr1_3:13548470-13548489 None:intergenic 45.0%
CAAGCACTTCAGTTGCCAAA+TGG + chr1_3:13548472-13548491 Msa0105190:CDS 45.0%
!! TTTTGAGGAAACGGTCTCCA+TGG - chr1_3:13548747-13548766 None:intergenic 45.0%
!! ATGCTCGGTGCAACAATTGT+GGG - chr1_3:13549528-13549547 None:intergenic 45.0%
! TGAGCTTAGCTAAGTTGGCA+TGG - chr1_3:13549719-13549738 None:intergenic 45.0%
CACGACGACTCTTTCCTAAA+TGG + chr1_3:13549737-13549756 Msa0105190:intron 45.0%
GTGCAAACTTTGCAACAGCA+GGG + chr1_3:13550390-13550409 Msa0105190:CDS 45.0%
! AATTAGGGGCCAGGTCATTT+TGG + chr1_3:13551007-13551026 Msa0105190:CDS 45.0%
ATCCACACGAAGTTGAGCTA+GGG - chr1_3:13551166-13551185 None:intergenic 45.0%
AGGATTTGAGCTACCACATG+TGG + chr1_3:13551390-13551409 Msa0105190:intron 45.0%
GGATGGTACACATTACACAG+AGG + chr1_3:13551537-13551556 Msa0105190:CDS 45.0%
!!! ATTAAAAAAAATATTTTACA+GGG - chr1_3:13547335-13547354 None:intergenic 5.0%
!!! AATTAAAAAAAATATTTTAC+AGG - chr1_3:13547336-13547355 None:intergenic 5.0%
!!! ATTTTTTTTTACAAAAATTT+TGG - chr1_3:13547417-13547436 None:intergenic 5.0%
!! TTTATTAATATATATAACAA+GGG - chr1_3:13550955-13550974 None:intergenic 5.0%
!!! TTTTATTAATATATATAACA+AGG - chr1_3:13550956-13550975 None:intergenic 5.0%
GGTGACTCAAACTCAGACAC+TGG + chr1_3:13542716-13542735 Msa0105190:CDS 50.0%
GACTCAAACTCAGACACTGG+TGG + chr1_3:13542719-13542738 Msa0105190:CDS 50.0%
AAACTCAGACACTGGTGGCT+TGG + chr1_3:13542724-13542743 Msa0105190:CDS 50.0%
AGAACCTCCCATTAGGTCTG+TGG - chr1_3:13542796-13542815 None:intergenic 50.0%
CCATCAGAGAACCTCCCATT+AGG - chr1_3:13542803-13542822 None:intergenic 50.0%
CCTAATGGGAGGTTCTCTGA+TGG + chr1_3:13542800-13542819 Msa0105190:CDS 50.0%
GCACCCACATCACTTAAGTG+AGG + chr1_3:13543138-13543157 Msa0105190:intron 50.0%
GGCACCTCACTTAAGTGATG+TGG - chr1_3:13543145-13543164 None:intergenic 50.0%
AAAGGACTGTATCCACCCTG+AGG - chr1_3:13544193-13544212 None:intergenic 50.0%
! AGCAGTAGTGTTGGATGTGG+AGG + chr1_3:13545499-13545518 Msa0105190:CDS 50.0%
TGGATGTGGAGGAACCATAG+AGG + chr1_3:13545510-13545529 Msa0105190:CDS 50.0%
GGAGGAACCATAGAGGTCAA+TGG + chr1_3:13545517-13545536 Msa0105190:CDS 50.0%
TGGATCAGAGAAAGCTCCAG+TGG - chr1_3:13545647-13545666 None:intergenic 50.0%
AGGACAACAACTCACCGCAT+TGG - chr1_3:13545956-13545975 None:intergenic 50.0%
! TTCAGCATTGGAGTGCTTGC+AGG - chr1_3:13546009-13546028 None:intergenic 50.0%
GAGGAGCGGTTATAGTCTGT+TGG + chr1_3:13546100-13546119 Msa0105190:intron 50.0%
CTGGCAGCAATATGGAGCAA+TGG - chr1_3:13546132-13546151 None:intergenic 50.0%
AGGGAAAGCTGGCAGCAATA+TGG - chr1_3:13546140-13546159 None:intergenic 50.0%
!!! AACTAGCGCAGGGGCATTTT+GGG - chr1_3:13546212-13546231 None:intergenic 50.0%
!!! TAACTAGCGCAGGGGCATTT+TGG - chr1_3:13546213-13546232 None:intergenic 50.0%
TGCGCAAGTTAACTAGCGCA+GGG - chr1_3:13546222-13546241 None:intergenic 50.0%
TTGCGCAAGTTAACTAGCGC+AGG - chr1_3:13546223-13546242 None:intergenic 50.0%
AATAGAGGGAGAGAGTGAGG+AGG + chr1_3:13546486-13546505 Msa0105190:intron 50.0%
ATAGAGGGAGAGAGTGAGGA+GGG + chr1_3:13546487-13546506 Msa0105190:intron 50.0%
! ACACACGTTTTTGTGGACGG+TGG - chr1_3:13546662-13546681 None:intergenic 50.0%
TCTTGCGTTAACTCGCGCAT+AGG + chr1_3:13546682-13546701 Msa0105190:intron 50.0%
TGACTTAAGTCACGCACCAC+TGG - chr1_3:13546708-13546727 None:intergenic 50.0%
TGCGTGACTTAAGTCACGCA+TGG + chr1_3:13546712-13546731 Msa0105190:intron 50.0%
TCCTTTCCCTTTGTGGAGAG+TGG + chr1_3:13546874-13546893 Msa0105190:intron 50.0%
CCTTTCCCTTTGTGGAGAGT+GGG + chr1_3:13546875-13546894 Msa0105190:intron 50.0%
CATATGCTTGCAGCAGTCCA+AGG - chr1_3:13546947-13546966 None:intergenic 50.0%
!!! GGCCTATTAGGGGGGTATTT+TGG - chr1_3:13547385-13547404 None:intergenic 50.0%
GATGCATGGTGCAACAACCA+TGG + chr1_3:13548727-13548746 Msa0105190:intron 50.0%
!! TGCTCGGTGCAACAATTGTG+GGG - chr1_3:13549527-13549546 None:intergenic 50.0%
!! GATGCTCGGTGCAACAATTG+TGG - chr1_3:13549529-13549548 None:intergenic 50.0%
GATGCACGGTGCAACAATTG+TGG - chr1_3:13549581-13549600 None:intergenic 50.0%
CGTCGTGAGCTTAGCTAAGT+TGG - chr1_3:13549724-13549743 None:intergenic 50.0%
GGTGCAAACTTTGCAACAGC+AGG + chr1_3:13550389-13550408 Msa0105190:CDS 50.0%
GATCCACACGAAGTTGAGCT+AGG - chr1_3:13551167-13551186 None:intergenic 50.0%
CTACCACATGTGGCATGTTG+TGG + chr1_3:13551400-13551419 Msa0105190:CDS 50.0%
TAGCCACAACATGCCACATG+TGG - chr1_3:13551406-13551425 None:intergenic 50.0%
CATGTGGCATGTTGTGGCTA+TGG + chr1_3:13551406-13551425 Msa0105190:CDS 50.0%
GCCCTATTTAGTGGAATGGG+AGG - chr1_3:13551613-13551632 None:intergenic 50.0%
CAAGCACCAACGCCACCATA+TGG + chr1_3:13542758-13542777 Msa0105190:CDS 55.0%
! GTCTCTCCATATGGTGGCGT+TGG - chr1_3:13542767-13542786 None:intergenic 55.0%
!! TGACTTGGTCTTCGCTGACG+TGG + chr1_3:13543116-13543135 Msa0105190:intron 55.0%
!! TTGACTGGTCTTCGCTGACG+TGG - chr1_3:13543190-13543209 None:intergenic 55.0%
TGCGAGCAAAATGTGCTGGG+TGG - chr1_3:13546176-13546195 None:intergenic 55.0%
GGGTGCGAGCAAAATGTGCT+GGG - chr1_3:13546179-13546198 None:intergenic 55.0%
AGGGTGCGAGCAAAATGTGC+TGG - chr1_3:13546180-13546199 None:intergenic 55.0%
! GCATTTTGGGCATGGCTGCA+GGG - chr1_3:13546199-13546218 None:intergenic 55.0%
GCGCAAGTTAACTAGCGCAG+GGG - chr1_3:13546221-13546240 None:intergenic 55.0%
GGCGCAAGTTAAGTGACGCA+TGG + chr1_3:13546273-13546292 Msa0105190:intron 55.0%
TAGAGGGAGAGAGTGAGGAG+GGG + chr1_3:13546488-13546507 Msa0105190:intron 55.0%
AGGAGGGGGAGAAAGTGAGA+TGG + chr1_3:13546503-13546522 Msa0105190:intron 55.0%
TTAACTCGCGCATAGGCCAG+TGG + chr1_3:13546689-13546708 Msa0105190:intron 55.0%
AGGGCGCGAGCAAAATGTAC+TGG + chr1_3:13546837-13546856 Msa0105190:intron 55.0%
GGGCGCGAGCAAAATGTACT+GGG + chr1_3:13546838-13546857 Msa0105190:intron 55.0%
CGCGAGCAAAATGTACTGGG+TGG + chr1_3:13546841-13546860 Msa0105190:intron 55.0%
CCCACTCTCCACAAAGGGAA+AGG - chr1_3:13546878-13546897 None:intergenic 55.0%
TCACGCCCACTCTCCACAAA+GGG - chr1_3:13546883-13546902 None:intergenic 55.0%
AGCCCTAGCTCAACTTCGTG+TGG + chr1_3:13551161-13551180 Msa0105190:CDS 55.0%
GTGGCATGTTGTGGCTATGG+AGG + chr1_3:13551409-13551428 Msa0105190:CDS 55.0%
! GGCATTTTGGGCATGGCTGC+AGG - chr1_3:13546200-13546219 None:intergenic 60.0%
AGAGGGAGAGAGTGAGGAGG+GGG + chr1_3:13546489-13546508 Msa0105190:intron 60.0%
GTCACGCCCACTCTCCACAA+AGG - chr1_3:13546884-13546903 None:intergenic 60.0%
AGTGGGCGTGACCGCAGTAA+TGG + chr1_3:13546892-13546911 Msa0105190:intron 60.0%
!!! GCGCAGGGGCATTTTGGGCA+TGG - chr1_3:13546207-13546226 None:intergenic 65.0%
GGTGGCTGGGGTTTGAACCC+TGG + chr1_3:13549670-13549689 Msa0105190:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 13542608 13551752 13542608 ID=Msa0105190;Name=Msa0105190
chr1_3 mRNA 13542608 13551752 13542608 ID=Msa0105190-mRNA-1;Parent=Msa0105190;Name=Msa0105190-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0.6|0.36|1|0.6|0.54|11|104|686
chr1_3 exon 13542608 13542845 13542608 ID=Msa0105190-mRNA-1:exon:5320;Parent=Msa0105190-mRNA-1
chr1_3 exon 13544071 13544280 13544071 ID=Msa0105190-mRNA-1:exon:5321;Parent=Msa0105190-mRNA-1
chr1_3 exon 13544366 13544535 13544366 ID=Msa0105190-mRNA-1:exon:5322;Parent=Msa0105190-mRNA-1
chr1_3 exon 13545154 13545319 13545154 ID=Msa0105190-mRNA-1:exon:5323;Parent=Msa0105190-mRNA-1
chr1_3 exon 13545446 13545623 13545446 ID=Msa0105190-mRNA-1:exon:5324;Parent=Msa0105190-mRNA-1
chr1_3 exon 13548333 13548559 13548333 ID=Msa0105190-mRNA-1:exon:5325;Parent=Msa0105190-mRNA-1
chr1_3 exon 13550324 13550533 13550324 ID=Msa0105190-mRNA-1:exon:5326;Parent=Msa0105190-mRNA-1
chr1_3 exon 13550659 13550828 13550659 ID=Msa0105190-mRNA-1:exon:5327;Parent=Msa0105190-mRNA-1
chr1_3 exon 13550997 13551128 13550997 ID=Msa0105190-mRNA-1:exon:5328;Parent=Msa0105190-mRNA-1
chr1_3 exon 13551159 13551261 13551159 ID=Msa0105190-mRNA-1:exon:5329;Parent=Msa0105190-mRNA-1
chr1_3 exon 13551392 13551752 13551392 ID=Msa0105190-mRNA-1:exon:5330;Parent=Msa0105190-mRNA-1
chr1_3 CDS 13542608 13542845 13542608 ID=Msa0105190-mRNA-1:cds;Parent=Msa0105190-mRNA-1
chr1_3 CDS 13544071 13544280 13544071 ID=Msa0105190-mRNA-1:cds;Parent=Msa0105190-mRNA-1
chr1_3 CDS 13544366 13544535 13544366 ID=Msa0105190-mRNA-1:cds;Parent=Msa0105190-mRNA-1
chr1_3 CDS 13545154 13545319 13545154 ID=Msa0105190-mRNA-1:cds;Parent=Msa0105190-mRNA-1
chr1_3 CDS 13545446 13545623 13545446 ID=Msa0105190-mRNA-1:cds;Parent=Msa0105190-mRNA-1
chr1_3 CDS 13548333 13548559 13548333 ID=Msa0105190-mRNA-1:cds;Parent=Msa0105190-mRNA-1
chr1_3 CDS 13550324 13550533 13550324 ID=Msa0105190-mRNA-1:cds;Parent=Msa0105190-mRNA-1
chr1_3 CDS 13550659 13550828 13550659 ID=Msa0105190-mRNA-1:cds;Parent=Msa0105190-mRNA-1
chr1_3 CDS 13550997 13551128 13550997 ID=Msa0105190-mRNA-1:cds;Parent=Msa0105190-mRNA-1
chr1_3 CDS 13551159 13551261 13551159 ID=Msa0105190-mRNA-1:cds;Parent=Msa0105190-mRNA-1
chr1_3 CDS 13551392 13551648 13551392 ID=Msa0105190-mRNA-1:cds;Parent=Msa0105190-mRNA-1
chr1_3 three_prime_UTR 13551649 13551752 13551649 ID=Msa0105190-mRNA-1:three_prime_utr;Parent=Msa0105190-mRNA-1
Gene Sequence

>Msa0105190

ATGTTTCATATATCAAGTTTATCATTTTTTGTGGTGTTATGTATAGCTACTACCACAGTGATTGAAAGTAGCAATAGTGAGTGCAATTTCCCTGCAATCTTCAACTTTGGTGACTCAAACTCAGACACTGGTGGCTTGGCTGCTTCTCTTCAAGCACCAACGCCACCATATGGAGAGACTTATTTCCACAGACCTAATGGGAGGTTCTCTGATGGCCGTCTAATTGTCGATTTCATTGCTCAAAGTTTTGGACTCCCTTATCTAAGCGCATATCTTGATTCTTTGGGGACCAATTTTTCACATGGTGCAAACTTTGCAACATCAGCATCAACAATTAGACCCCCACCTAGTATTATACCTCAGGGTGGATACAGTCCTTTCTACCTTGATGTCCAATACACTCAATTCAGAGATTTCAAACCTAGAACACAATTCATTAGACAACAAGGAGGATTATTTGCAAGCTTGATGCCCAAGGAAGAGTATTTCTCTAAGGCTTTGTACACATTTGATATTGGTCAAAATGATCTTGGTGCTGGCTTTTTTGGAAACATGACTATACAACAAGTAAATGCTTCTGTGCCAGAGATAATCAATAGTTTCTCCAAAAATATTAAGGATGAAAATGGTTGTGCAAAGCAATATAATGAAGTAGCACAATATTTCAATCATAAGTTGAAGGAAGCTGTCTTTAAACTTCGTGATGATCTTCCTTTAGCTGCAATCACATATGTAGATATCTACTCTGTTAAATATTCCATTTTTAACAACCCAAAAAAATATGGATTTGAGCATCCCCTAGTTGTTTGTTGTGGCTATGGAGGAGAGTATAATTACAGCAGTAGTGTTGGATGTGGAGGAACCATAGAGGTCAATGGTACTCAAATTTTTGTAGGTTCATGTGAAAGACCATCTTCAAGAGTGAATTGGGATGGAATTCATTACACTGAAGCAGCTAGCAAGCACATGTCACTTGTGTATTTGATTGTGCTTATTTTATGTTCTACACCCCCAATATTTGCTACAAAGAATTGTGATTTTCCTGCAATATTTAACTTTGGTGCTTCAAATGCTGATACTGGTGGTTTGGCTGCTGCCTTTCAAGCACTTCAGTTGCCAAATGGAGAGACTTTTTTCAATAGATCAACTGGAAGATTTTCTGATGGCCGAATCATTCTTGATTTCATAGCACAAAGCTTTGGACTTCCCTACCTAAGTCCATATCTTAATTCTCTAGGATCAAACTTCACACATGGTGCAAACTTTGCAACAGCAGGGTCAACAATCAAAATTCCTAATAGTATTATACCCAATGGAATGTTTAGTCCATTTTCCCTTCAAATTCAGTACAATCAATTCAAAGATTTCATACCAAAAGCAAAATTCATTAGAGATCAAGGAGGTGTATTTGCAACATTGATCCCCAAAGAAGATTATTATTCCAAAGCCTTATACACATTTGATATTGGTCAAAATGATCTTACTGCTGGTTTTTTTGGTAATAAGACTATACAACAAGTCAACGATACTATGCCCGATATAGTAAAGAATTTTATAGAGAATATCAAGAATATATACAAATTAGGGGCCAGGTCATTTTGGATACACAACACTGGACCAATTGGATGTGTGCCTTTAATTTTGGCCAATTTTCCATCTGCTATAAAGGATAGCCAAGGTTGTGCAAAGCAATACAATGAAGAAGCCCTAGCTCAACTTCGTGTGGATCTTCCACTAGCTGCAATCACATATGTTGATATCTACTCTCCTAAGTACTCTCTTTTCCAAAATCCAAAAAAATACGGATTTGAGCTACCACATGTGGCATGTTGTGGCTATGGAGGAGAGTATAACTATAACATTCGTGCTAGATGTGGAGAAATCATAAACATAAATGGTACAAACATTGTTGTGGGTTCATGTAAAAAACCATCTACTAGAATAATATGGGATGGTACACATTACACAGAGGCAGCTAACAAGATTGTCTTTGATCAAATCTCTACTGGAGCTTTTACAGATCCTCCCATTCCACTAAATAGGGCATGTTACAAAAAGTGA
Protein sequence

>Msa0105190

MFHISSLSFFVVLCIATTTVIESSNSECNFPAIFNFGDSNSDTGGLAASLQAPTPPYGETYFHRPNGRFSDGRLIVDFIAQSFGLPYLSAYLDSLGTNFSHGANFATSASTIRPPPSIIPQGGYSPFYLDVQYTQFRDFKPRTQFIRQQGGLFASLMPKEEYFSKALYTFDIGQNDLGAGFFGNMTIQQVNASVPEIINSFSKNIKDENGCAKQYNEVAQYFNHKLKEAVFKLRDDLPLAAITYVDIYSVKYSIFNNPKKYGFEHPLVVCCGYGGEYNYSSSVGCGGTIEVNGTQIFVGSCERPSSRVNWDGIHYTEAASKHMSLVYLIVLILCSTPPIFATKNCDFPAIFNFGASNADTGGLAAAFQALQLPNGETFFNRSTGRFSDGRIILDFIAQSFGLPYLSPYLNSLGSNFTHGANFATAGSTIKIPNSIIPNGMFSPFSLQIQYNQFKDFIPKAKFIRDQGGVFATLIPKEDYYSKALYTFDIGQNDLTAGFFGNKTIQQVNDTMPDIVKNFIENIKNIYKLGARSFWIHNTGPIGCVPLILANFPSAIKDSQGCAKQYNEEALAQLRVDLPLAAITYVDIYSPKYSLFQNPKKYGFELPHVACCGYGGEYNYNIRARCGEIININGTNIVVGSCKKPSTRIIWDGTHYTEAANKIVFDQISTGAFTDPPIPLNRACYKK*