AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0370420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0370420 MtrunA17_Chr3g0115461 98.636 660 9 0 1 660 1 660 0.0 1334
Msa0370420 MtrunA17_Chr5g0425241 76.543 648 142 4 19 658 7 652 0.0 1006
Msa0370420 MtrunA17_Chr3g0124381 62.997 654 220 7 15 657 12 654 0.0 816
Msa0370420 MtrunA17_Chr5g0425251 52.036 663 304 6 3 660 2 655 0.0 688
Msa0370420 MtrunA17_Chr3g0124371 51.946 668 295 11 2 658 6 658 0.0 662
Msa0370420 MtrunA17_Chr3g0115481 51.932 647 286 6 23 652 13 651 0.0 655
Msa0370420 MtrunA17_Chr2g0278931 52.073 603 276 5 52 649 54 648 0.0 607
Msa0370420 MtrunA17_Chr7g0260181 49.308 578 285 3 75 652 65 634 0.0 560
Msa0370420 MtrunA17_Chr2g0331951 48.041 587 295 4 75 660 70 647 0.0 541
Msa0370420 MtrunA17_Chr1g0185231 44.720 644 340 5 17 652 2 637 0.0 540
Msa0370420 MtrunA17_Chr4g0043931 44.623 623 323 7 39 651 22 632 1.80e-178 522
Msa0370420 MtrunA17_Chr4g0004261 46.116 605 318 3 56 660 58 654 4.06e-178 521
Msa0370420 MtrunA17_Chr6g0485191 43.328 577 313 6 77 652 113 676 1.92e-161 480
Msa0370420 MtrunA17_Chr4g0043951 44.050 563 290 7 5 560 3 547 5.12e-155 458
Msa0370420 MtrunA17_Chr7g0222631 36.632 576 338 11 88 655 83 639 2.56e-110 348
Msa0370420 MtrunA17_Chr1g0173031 37.681 345 142 6 70 409 66 342 1.28e-53 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0370420 AT5G10180.1 61.852 637 231 4 26 656 46 676 0.0 803
Msa0370420 AT1G77990.1 62.031 640 229 4 20 650 30 664 0.0 779
Msa0370420 AT1G22150.1 52.904 637 277 6 38 659 26 654 0.0 647
Msa0370420 AT1G22150.3 52.904 637 277 6 38 659 26 654 0.0 647
Msa0370420 AT1G22150.4 52.904 637 277 6 38 659 26 654 0.0 647
Msa0370420 AT4G08620.1 52.615 631 276 5 38 652 17 640 0.0 642
Msa0370420 AT1G78000.2 54.200 631 266 6 38 652 22 645 0.0 636
Msa0370420 AT1G78000.1 54.200 631 266 6 38 652 22 645 0.0 636
Msa0370420 AT1G78000.3 54.200 631 266 6 38 652 22 645 0.0 636
Msa0370420 AT1G78000.5 54.392 592 247 6 38 613 22 606 0.0 594
Msa0370420 AT1G22150.2 53.180 566 243 5 38 588 26 584 0.0 582
Msa0370420 AT3G51895.2 45.497 644 337 6 14 652 48 682 0.0 576
Msa0370420 AT3G51895.1 45.497 644 337 6 14 652 3 637 0.0 576
Msa0370420 AT1G78000.4 54.561 570 236 6 38 591 22 584 0.0 573
Msa0370420 AT3G15990.1 46.024 591 309 5 60 649 59 640 0.0 530
Msa0370420 AT1G23090.1 46.827 583 300 5 75 656 51 624 1.03e-175 514
Msa0370420 AT4G02700.1 44.928 621 329 4 37 652 15 627 2.09e-171 504
Msa0370420 AT1G78000.7 57.456 456 187 3 136 591 1 449 3.28e-171 497
Msa0370420 AT1G78000.6 55.992 484 192 4 38 505 22 500 4.67e-167 488
Msa0370420 AT5G19600.1 43.005 579 307 5 77 652 65 623 2.74e-164 486
Msa0370420 AT1G23090.2 45.545 505 261 6 153 656 1 492 4.98e-142 424
Msa0370420 AT1G23090.3 45.545 505 261 6 153 656 1 492 4.98e-142 424
Msa0370420 AT1G23090.4 45.545 505 261 6 153 656 1 492 4.98e-142 424
Msa0370420 AT3G12520.2 33.775 604 384 8 53 655 28 616 2.30e-112 352
Msa0370420 AT3G12520.1 33.775 604 384 8 53 655 44 632 2.48e-112 353
Msa0370420 AT5G13550.1 33.940 604 383 8 53 655 57 645 4.51e-109 345
Msa0370420 AT3G12520.3 34.122 507 318 8 53 558 44 535 5.86e-92 295

Find 160 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTAGTTTGACTTTCTTTA+AGG 0.154749 3_1:+68129121 None:intergenic
TATATCACCCTACGTTATTT+TGG 0.158521 3_1:+68128263 None:intergenic
GCACACTTTGTGGATAAAAT+TGG 0.172279 3_1:-68128544 Msa0370420:CDS
GTTGGACAAGCAGCTAAAAT+TGG 0.258087 3_1:-68131724 Msa0370420:CDS
GCAAAACTTGATCCTCAATA+TGG 0.263394 3_1:-68133154 Msa0370420:CDS
ATCTGATGTGGTTTCTGTTT+TGG 0.265706 3_1:-68132579 Msa0370420:CDS
TAAGAGAAGCTTGCTATATA+TGG 0.265917 3_1:-68130711 Msa0370420:CDS
TCAAATCAGTGGACATTTAC+AGG 0.281496 3_1:+68133696 None:intergenic
ATATAACTAATGTTTGAAAA+TGG 0.285502 3_1:-68133937 Msa0370420:five_prime_UTR
TTGTCACATGCTGCACTTGT+AGG 0.290645 3_1:-68132680 Msa0370420:CDS
TTGATGAATGTTGATACTTC+TGG 0.296180 3_1:-68128947 Msa0370420:CDS
TTCCATAGAGGAGGTGGATT+TGG 0.296434 3_1:+68133491 None:intergenic
ATAATCCTCTCTGCACTTCC+AGG 0.304769 3_1:-68130745 Msa0370420:CDS
GTTCACCATTGAGTTGTAAT+TGG 0.307870 3_1:+68131749 None:intergenic
TCAAGAGGGTCAATTTGATT+TGG 0.320695 3_1:+68133729 None:intergenic
TTGTTTGTATCGGTAGAAAT+TGG 0.326079 3_1:-68130637 Msa0370420:CDS
CACCAAATCCACCTCCTCTA+TGG 0.326646 3_1:-68133493 Msa0370420:CDS
TGTATCATCTCATTATCTTC+TGG 0.327658 3_1:-68128165 Msa0370420:three_prime_UTR
GGTGAATTGAGCTTGGATTA+AGG 0.334344 3_1:+68131770 None:intergenic
GATTGGTCTTCAGCAGCTTA+AGG 0.344368 3_1:-68132633 Msa0370420:CDS
TGGATAAAATTGGGAAAGAA+TGG 0.350661 3_1:-68128534 Msa0370420:CDS
ATTAAAGGATACCATCTAGA+TGG 0.353006 3_1:-68131548 Msa0370420:CDS
ATTGGTTAATCTATAAAGTT+GGG 0.372974 3_1:+68133840 None:intergenic
TCTTGTGGCATCTCTTAGAT+TGG 0.377154 3_1:+68133822 None:intergenic
TTTCTTTGTTCCCATCTAGA+TGG 0.377693 3_1:+68131537 None:intergenic
GAGGATTATTGAAGCAAGTA+TGG 0.380145 3_1:+68130759 None:intergenic
TTGAACGTATTTATACTATT+CGG 0.381703 3_1:-68128296 Msa0370420:three_prime_UTR
TATCTAATGTTTCAGAGTAT+TGG 0.382487 3_1:-68133190 Msa0370420:intron
GAGGGTCCAAGCTGTAATAT+TGG 0.384678 3_1:-68129094 Msa0370420:CDS
AAGAACTTGTTATTCTTAAG+TGG 0.386415 3_1:+68133455 None:intergenic
CGACCTGGGATAGAAGTTCT+TGG 0.386434 3_1:-68129419 Msa0370420:CDS
GATTGGTTAATCTATAAAGT+TGG 0.387949 3_1:+68133839 None:intergenic
CAGCAGCTTAAGGGGTTGCT+TGG 0.391696 3_1:-68132623 Msa0370420:CDS
GCTTAAAGTGGCACACTTTG+TGG 0.393127 3_1:-68128554 Msa0370420:CDS
AGCAGCTTAAGGGGTTGCTT+GGG 0.395989 3_1:-68132622 Msa0370420:CDS
TCACAGAAGGCTTGTGTTGT+TGG 0.396597 3_1:+68129389 None:intergenic
GCTTGCATTGGTGCTTTCTT+CGG 0.396879 3_1:-68130664 Msa0370420:CDS
CACACTTTGTGGATAAAATT+GGG 0.397337 3_1:-68128543 Msa0370420:CDS
GCACAAAGATTATTCTTTGA+AGG 0.402042 3_1:+68133772 None:intergenic
TTTACTGTAACATTATTTGC+TGG 0.407664 3_1:-68132839 Msa0370420:CDS
GAAATGTTAGCAATGGGTTG+TGG 0.411356 3_1:-68131518 Msa0370420:CDS
ATGGGTTGTGGGAACATTGC+AGG 0.411452 3_1:-68131506 Msa0370420:CDS
ATTGGTCTTCAGCAGCTTAA+GGG 0.412152 3_1:-68132632 Msa0370420:CDS
ATTTGGATAATTGCTTGAAA+GGG 0.415017 3_1:+68133746 None:intergenic
TGCTGCACTTGTAGGATTCA+TGG 0.416473 3_1:-68132672 Msa0370420:CDS
GATTTGGATAATTGCTTGAA+AGG 0.419392 3_1:+68133745 None:intergenic
AGAAACCACATCAGATTTGT+TGG 0.419815 3_1:+68132586 None:intergenic
TTTGACTTCCTTGCTTGCAT+TGG 0.419990 3_1:-68130676 Msa0370420:CDS
TAATCATCATGATTTAAATC+TGG 0.422388 3_1:+68132875 None:intergenic
ACTTCATGCTATGTTGCAAC+TGG 0.422888 3_1:-68131476 Msa0370420:intron
TAAAGAAAGTCAAACTACTA+AGG 0.422980 3_1:-68129118 Msa0370420:CDS
TTATCTGTAGTGTATACAAT+TGG 0.430685 3_1:-68128431 Msa0370420:three_prime_UTR
AGTTCAAGAGAAATTGCAAT+TGG 0.438871 3_1:-68132953 Msa0370420:CDS
GGTCAGCGAATTTATAAGAT+AGG 0.445238 3_1:+68128476 None:intergenic
CCATAAATCTTGCAAACAAA+AGG 0.446827 3_1:+68132013 None:intergenic
CCTCTTATCTATGCTGTGAT+GGG 0.450706 3_1:-68132977 Msa0370420:CDS
TCTCTTATGTCAATTAATCC+TGG 0.451555 3_1:+68130727 None:intergenic
TACAAGCACTCCAGGCATCT+TGG 0.452819 3_1:-68129345 Msa0370420:CDS
GGATAAAATTGGGAAAGAAT+GGG 0.456057 3_1:-68128533 Msa0370420:CDS
TGTAACAGTGATTCTGTGTT+TGG 0.461750 3_1:-68130818 Msa0370420:CDS
TGTAATTGGTGAATTGAGCT+TGG 0.462279 3_1:+68131763 None:intergenic
CTTCGGTGTCTTGTTTGTAT+CGG 0.463347 3_1:-68130647 Msa0370420:CDS
TCCTCTTATCTATGCTGTGA+TGG 0.465460 3_1:-68132978 Msa0370420:CDS
AATATGAGAGTCACAGAAGA+TGG 0.472056 3_1:-68133572 Msa0370420:CDS
TGTGAATTACTAGCCACCTT+GGG 0.472725 3_1:+68128578 None:intergenic
ATCAACCACTTTGTGACATA+AGG 0.473180 3_1:+68132898 None:intergenic
CGCTGGATGACAAGAAACTC+TGG 0.475479 3_1:+68128371 None:intergenic
AAATGTTAGCAATGGGTTGT+GGG 0.484005 3_1:-68131517 Msa0370420:CDS
AACAAAGAAATGTTAGCAAT+GGG 0.485559 3_1:-68131524 Msa0370420:CDS
GCAGGTGCAGCCATCATGAT+TGG 0.487827 3_1:-68132650 Msa0370420:CDS
AAGATACTCATCAAACAGAT+AGG 0.488267 3_1:-68133535 Msa0370420:CDS
GGATTTATGCTCATCTTCAC+AGG 0.493067 3_1:-68133879 Msa0370420:five_prime_UTR
CTCCGGATGGAATTTGATGA+TGG 0.497401 3_1:+68132537 None:intergenic
TTGCAGGTTGGGATTTCTTG+TGG 0.498105 3_1:-68132708 Msa0370420:intron
CCCATCACAGCATAGATAAG+AGG 0.498846 3_1:+68132977 None:intergenic
TTAATCTATAAAGTTGGGAA+TGG 0.499428 3_1:+68133845 None:intergenic
TTACCTTTCTCTTACAACAT+TGG 0.501627 3_1:+68129283 None:intergenic
ATAGTAAAACATGTCAAAAG+AGG 0.504882 3_1:-68131793 Msa0370420:CDS
CCCATGGCTACAAGCACTCC+AGG 0.507925 3_1:-68129353 Msa0370420:CDS
AAAGAAAGTCAAACTACTAA+GGG 0.510904 3_1:-68129117 Msa0370420:CDS
CTCCATCATCAAATTCCATC+CGG 0.512952 3_1:-68132539 Msa0370420:CDS
GACACTAGAGGAGCAATAGC+TGG 0.513276 3_1:+68131874 None:intergenic
TACTTCTGGAATTATAGTAC+TGG 0.514900 3_1:-68128933 Msa0370420:CDS
ATGCCAATGTTGTAAGAGAA+AGG 0.517333 3_1:-68129286 Msa0370420:intron
ATACAATTGGAATTGCATAT+AGG 0.525073 3_1:-68128418 Msa0370420:three_prime_UTR
CAACTCAATGGTGAACATGT+TGG 0.525684 3_1:-68131742 Msa0370420:CDS
TTGGTCATTCGTATAAGCTC+TGG 0.525879 3_1:-68129326 Msa0370420:CDS
ATAAGATAGGCATGCTTCCA+CGG 0.526500 3_1:+68128489 None:intergenic
GCCTGGAGTGCTTGTAGCCA+TGG 0.529683 3_1:+68129352 None:intergenic
TGATATAGAAACTAGTAGAG+TGG 0.536204 3_1:-68128247 Msa0370420:three_prime_UTR
AGCAGTGACACTACAGCTAC+TGG 0.536402 3_1:+68132929 None:intergenic
GAACAAAGAAATGTTAGCAA+TGG 0.536518 3_1:-68131525 Msa0370420:CDS
ATTCACCAATTACAACTCAA+TGG 0.538027 3_1:-68131754 Msa0370420:CDS
TCGCTGACCCGTGATTTCAC+AGG 0.539593 3_1:-68128462 Msa0370420:exon
TGCTAGCCTAAGCATACCTC+AGG 0.539896 3_1:-68133300 Msa0370420:intron
CCACGGCTTCAGCAACGGTA+AGG 0.544085 3_1:+68128506 None:intergenic
TGCTTCCACGGCTTCAGCAA+CGG 0.546644 3_1:+68128501 None:intergenic
TTGTGAATTACTAGCCACCT+TGG 0.547481 3_1:+68128577 None:intergenic
AGAAAGCACCAATGCAAGCA+AGG 0.551839 3_1:+68130668 None:intergenic
ATACGAATGACCAAGATGCC+TGG 0.556493 3_1:+68129335 None:intergenic
TATATAATCCAAAATAACGT+AGG 0.559729 3_1:-68128271 Msa0370420:three_prime_UTR
TACCTACACAAGCCATATTG+AGG 0.559998 3_1:+68133142 None:intergenic
TGTTCTAAATGTGTTAAACA+TGG 0.561709 3_1:+68128013 None:intergenic
TTGGTCTTCAGCAGCTTAAG+GGG 0.565521 3_1:-68132631 Msa0370420:CDS
TTAAAGGATACCATCTAGAT+GGG 0.565733 3_1:-68131547 Msa0370420:CDS
AAAGTACTTACTTCTCCGGA+TGG 0.566401 3_1:+68132524 None:intergenic
ATCAGTATCAAATATTGTGA+TGG 0.566934 3_1:-68130842 Msa0370420:CDS
CTACCAAGAACTTCTATCCC+AGG 0.571095 3_1:+68129416 None:intergenic
TTGGGAAGCATAAATAGAGA+GGG 0.574818 3_1:-68133902 Msa0370420:five_prime_UTR
TACTGGAGGAACTGCACAAG+AGG 0.577069 3_1:-68128916 Msa0370420:CDS
CAGGACTAGATTTGTCAAGA+GGG 0.578549 3_1:+68133715 None:intergenic
TGTCAATATATGTCTCCTAT+CGG 0.578553 3_1:-68128190 Msa0370420:three_prime_UTR
AGTAATTCACAAGCTTAAAG+TGG 0.582837 3_1:-68128566 Msa0370420:CDS
CACAAGAGGTTGCTCTCCCG+TGG 0.584272 3_1:-68128902 Msa0370420:CDS
TCATGTCCAATATTACAGCT+TGG 0.587216 3_1:+68129088 None:intergenic
ATTGGGAAGCATAAATAGAG+AGG 0.587279 3_1:-68133903 Msa0370420:five_prime_UTR
ACAGGACTAGATTTGTCAAG+AGG 0.588059 3_1:+68133714 None:intergenic
ATATAATCCAAAATAACGTA+GGG 0.591078 3_1:-68128270 Msa0370420:three_prime_UTR
TATATACCTGAGGTATGCTT+AGG 0.597660 3_1:+68133294 None:intergenic
CTCTTATCTATGCTGTGATG+GGG 0.597838 3_1:-68132976 Msa0370420:CDS
TTATAGGAAGCAATGGCTGT+TGG 0.598367 3_1:-68131587 Msa0370420:intron
TCTCATATTGAAAGCATCAG+AGG 0.599209 3_1:+68133586 None:intergenic
ATCTTCCTTATGTCACAAAG+TGG 0.602945 3_1:-68132903 Msa0370420:CDS
CTTCACCAACAAATCTGATG+TGG 0.603053 3_1:-68132591 Msa0370420:CDS
ATTGTTCCAGAATACTCAAG+TGG 0.606100 3_1:-68129161 Msa0370420:intron
TTCTGGAATTATAGTACTGG+AGG 0.606870 3_1:-68128930 Msa0370420:CDS
CCTTACCGTTGCTGAAGCCG+TGG 0.611588 3_1:-68128506 Msa0370420:CDS
GAAGGCTATGTATGACTGAG+AGG 0.611649 3_1:+68133790 None:intergenic
AAAGTCAAACTACTAAGGGG+AGG 0.612648 3_1:-68129113 Msa0370420:CDS
ATGAGATGATACAATCCGAT+AGG 0.613639 3_1:+68128175 None:intergenic
CATGTCAATTGTCAAATCAG+TGG 0.615503 3_1:+68133685 None:intergenic
GAATTCAAAACTAGGCACGC+TGG 0.615831 3_1:+68128354 None:intergenic
CTTCCAATGACAAAATTCAG+AGG 0.616131 3_1:+68132051 None:intergenic
AAGTCAAACTACTAAGGGGA+GGG 0.616401 3_1:-68129112 Msa0370420:CDS
CCTGGAGTGCTTGTAGCCAT+GGG 0.620616 3_1:+68129353 None:intergenic
AAAACGACCTGTGAAATCAC+GGG 0.620959 3_1:+68128455 None:intergenic
CTCATATTGAAAGCATCAGA+GGG 0.624348 3_1:+68133587 None:intergenic
TGATGTTAGTCAATATCCCA+TGG 0.624539 3_1:-68129369 Msa0370420:CDS
ATTGAAGCAAGTATGGCCAC+AGG 0.625560 3_1:+68130766 None:intergenic
TTGTTCCAGAATACTCAAGT+GGG 0.625900 3_1:-68129160 Msa0370420:intron
GGGAAGCATAAATAGAGAGG+GGG 0.626642 3_1:-68133900 Msa0370420:five_prime_UTR
GCACTTGTAGGATTCATGGC+AGG 0.636916 3_1:-68132668 Msa0370420:CDS
TGGGAAGCATAAATAGAGAG+GGG 0.638485 3_1:-68133901 Msa0370420:five_prime_UTR
TTCCAATGACAAAATTCAGA+GGG 0.638852 3_1:+68132052 None:intergenic
ATATTGACTAACATCACAGA+AGG 0.640670 3_1:+68129376 None:intergenic
TTTGGATAATTGCTTGAAAG+GGG 0.645238 3_1:+68133747 None:intergenic
GAGAGGATACTTGTGTCTTG+TGG 0.649818 3_1:+68133807 None:intergenic
GTAATACAATCAATTCGACC+TGG 0.650323 3_1:-68129434 Msa0370420:CDS
CTGCTGAAGACCAATCATGA+TGG 0.650508 3_1:+68132640 None:intergenic
ATCACAGCATAGATAAGAGG+AGG 0.652330 3_1:+68132980 None:intergenic
TAATACAATCAATTCGACCT+GGG 0.657689 3_1:-68129433 Msa0370420:CDS
AAGAAAGTCAAACTACTAAG+GGG 0.662851 3_1:-68129116 Msa0370420:CDS
TTGGTCTTCAGACACAAGTG+TGG 0.667826 3_1:-68133005 Msa0370420:intron
TGTGTTTGGAATTGTTCACA+AGG 0.669909 3_1:-68130804 Msa0370420:CDS
GATAATATAACTGACACTAG+AGG 0.681566 3_1:+68131862 None:intergenic
TTGCTATGGTGAACCCAAGG+TGG 0.691691 3_1:-68128591 Msa0370420:CDS
AGTTTGCTATGGTGAACCCA+AGG 0.691933 3_1:-68128594 Msa0370420:CDS
GCTGTTATATTACACACCTG+TGG 0.711496 3_1:-68130782 Msa0370420:CDS
ATCAAACAGATAGGACACAG+TGG 0.745524 3_1:-68133526 Msa0370420:CDS
TTAATCCTGGAAGTGCAGAG+AGG 0.761072 3_1:+68130740 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGAATTATTTATTTGAT+TGG - chr3_1:68128935-68128954 Msa0370420:CDS 10.0%
!!! TAAGAAATGAAATATATTTT+TGG - chr3_1:68129969-68129988 Msa0370420:intron 10.0%
!!! TATTTTATTTGTTTTATAGT+TGG - chr3_1:68131026-68131045 Msa0370420:intron 10.0%
!!! ATAATTTTGTTTTCAAAAAT+TGG - chr3_1:68131444-68131463 Msa0370420:intron 10.0%
!! CATAAAATGTTAATTAATTT+AGG + chr3_1:68131877-68131896 None:intergenic 10.0%
!!! CTAAATTAATTAACATTTTA+TGG - chr3_1:68131875-68131894 Msa0370420:CDS 10.0%
!!! TTATTTATTTATTTTTTGAC+AGG - chr3_1:68131942-68131961 Msa0370420:intron 10.0%
!!! TTTTTTTATTTTTTTAGAGT+TGG + chr3_1:68132302-68132321 None:intergenic 10.0%
!! AATATATCTAAATGAAAATT+TGG - chr3_1:68132470-68132489 Msa0370420:intron 10.0%
!!! ATACATATAGATTTTATTAA+AGG - chr3_1:68133236-68133255 Msa0370420:intron 10.0%
!! ATATAACTAATGTTTGAAAA+TGG - chr3_1:68128022-68128041 Msa0370420:three_prime_UTR 15.0%
!!! TACTTTTTTTTTTCATTTTC+TGG - chr3_1:68129452-68129471 Msa0370420:CDS 15.0%
!!! ACTTTTTTTTTTCATTTTCT+GGG - chr3_1:68129453-68129472 Msa0370420:CDS 15.0%
!! TAAAGACAATTAACAAAAAA+GGG - chr3_1:68129683-68129702 Msa0370420:intron 15.0%
!!! GAAAATAACAGTATATTTTT+AGG - chr3_1:68129783-68129802 Msa0370420:intron 15.0%
!! ATATTGTTCAAGTAAAAATT+TGG + chr3_1:68130002-68130021 None:intergenic 15.0%
!!! TTTAGTTTCTAAAAATTTTG+AGG - chr3_1:68130336-68130355 Msa0370420:intron 15.0%
!!! AAAAATTTTGAGGTTTAATT+TGG - chr3_1:68130346-68130365 Msa0370420:intron 15.0%
!!! AAAATTTTGAGGTTTAATTT+GGG - chr3_1:68130347-68130366 Msa0370420:intron 15.0%
!!! GATCTACTTTTATTTATTTT+AGG + chr3_1:68130598-68130617 None:intergenic 15.0%
!! TTCTAAACATATATGAAAAT+AGG + chr3_1:68131405-68131424 None:intergenic 15.0%
!! AACTTTAACCAATAAATTAA+CGG - chr3_1:68131568-68131587 Msa0370420:CDS 15.0%
!! AACGAAATTATTGATATTTA+TGG - chr3_1:68131832-68131851 Msa0370420:CDS 15.0%
!! ACGAAATTATTGATATTTAT+GGG - chr3_1:68131833-68131852 Msa0370420:CDS 15.0%
!!! CTATTATTGAAGTTAATTTT+TGG - chr3_1:68132269-68132288 Msa0370420:intron 15.0%
!!! ATTTTATTAAAGGAAAATTG+TGG - chr3_1:68133246-68133265 Msa0370420:intron 15.0%
!! AAAATGGAAAAAGCAATAAT+TGG - chr3_1:68128038-68128057 Msa0370420:three_prime_UTR 20.0%
!! AAATGGAAAAAGCAATAATT+GGG - chr3_1:68128039-68128058 Msa0370420:three_prime_UTR 20.0%
!! ATTGGTTAATCTATAAAGTT+GGG + chr3_1:68128122-68128141 None:intergenic 20.0%
!! TAATCATCATGATTTAAATC+TGG + chr3_1:68129087-68129106 None:intergenic 20.0%
!! AGATAATTAACAGTTAAATG+AGG + chr3_1:68129191-68129210 None:intergenic 20.0%
!!! AATTTAATTTAATCTGTTGC+AGG - chr3_1:68129235-68129254 Msa0370420:intron 20.0%
!!! TTTTGTTAATTGTCTTTACT+TGG + chr3_1:68129681-68129700 None:intergenic 20.0%
!! GTAAAGACAATTAACAAAAA+AGG - chr3_1:68129682-68129701 Msa0370420:intron 20.0%
!!! ATATACTGTTATTTTCAACT+AGG + chr3_1:68129779-68129798 None:intergenic 20.0%
!!! AAGTATTCATCATGTTTTTT+CGG + chr3_1:68130951-68130970 None:intergenic 20.0%
!! AACATATATGAAAATAGGTT+GGG + chr3_1:68131400-68131419 None:intergenic 20.0%
!! AAACATATATGAAAATAGGT+TGG + chr3_1:68131401-68131420 None:intergenic 20.0%
!!! AGTTTAACTTAATAGATTCA+AGG + chr3_1:68131552-68131571 None:intergenic 20.0%
!! ACTTTAACCAATAAATTAAC+GGG - chr3_1:68131569-68131588 Msa0370420:CDS 20.0%
!! AAAGTCTAAAAATGAAATTC+TGG + chr3_1:68131624-68131643 None:intergenic 20.0%
!! AAAATTTATGTCTGTATTTG+TGG - chr3_1:68131744-68131763 Msa0370420:CDS 20.0%
!!! TTTTTACCAATAATTTTGAC+CGG + chr3_1:68132052-68132071 None:intergenic 20.0%
!! AATTATTGGTAAAAAGACAA+AGG - chr3_1:68132057-68132076 Msa0370420:CDS 20.0%
!!! AAATGAAAATTTGGTTTTGT+AGG - chr3_1:68132479-68132498 Msa0370420:intron 20.0%
!! TCTATCAAAGAAATTGTATA+CGG + chr3_1:68132991-68133010 None:intergenic 20.0%
!!! TCCATAAACTCTTATTTTTT+CGG + chr3_1:68133637-68133656 None:intergenic 20.0%
!! TTGAACGTATTTATACTATT+CGG - chr3_1:68133663-68133682 Msa0370420:five_prime_UTR 20.0%
!! TATATAATCCAAAATAACGT+AGG - chr3_1:68133688-68133707 Msa0370420:five_prime_UTR 20.0%
!! ATATAATCCAAAATAACGTA+GGG - chr3_1:68133689-68133708 Msa0370420:five_prime_UTR 20.0%
!! TAATATCAAGAGAAAAAAAG+TGG - chr3_1:68133835-68133854 Msa0370420:five_prime_UTR 20.0%
!! AATATCAAGAGAAAAAAAGT+GGG - chr3_1:68133836-68133855 Msa0370420:five_prime_UTR 20.0%
!!! TGAAAAACTTATACATTTTG+AGG - chr3_1:68133891-68133910 Msa0370420:five_prime_UTR 20.0%
! TTAATCTATAAAGTTGGGAA+TGG + chr3_1:68128117-68128136 None:intergenic 25.0%
!! GATTGGTTAATCTATAAAGT+TGG + chr3_1:68128123-68128142 None:intergenic 25.0%
! ATTTGGATAATTGCTTGAAA+GGG + chr3_1:68128216-68128235 None:intergenic 25.0%
!!! TCATTTTTGTTGAAGTGTTT+GGG + chr3_1:68128344-68128363 None:intergenic 25.0%
!!! GTAATTAGTTTTTTCCATAG+AGG + chr3_1:68128483-68128502 None:intergenic 25.0%
!!! AAGAACTTGTTATTCTTAAG+TGG + chr3_1:68128507-68128526 None:intergenic 25.0%
! AGAAAGAAAAAACATGTTCA+TGG + chr3_1:68128554-68128573 None:intergenic 25.0%
!!! CATGTTTTTTCTTTCTTTAG+TGG - chr3_1:68128558-68128577 Msa0370420:CDS 25.0%
!! TTTTTGAACAAGCTAAGTAT+TGG + chr3_1:68128591-68128610 None:intergenic 25.0%
!!! TTTAAAGATGATTTTCTAGC+AGG - chr3_1:68128627-68128646 Msa0370420:intron 25.0%
! TATTTGTGAATATATACCTG+AGG + chr3_1:68128678-68128697 None:intergenic 25.0%
!! TATTTATGCATCTGAAACAT+TGG + chr3_1:68128719-68128738 None:intergenic 25.0%
! TATCTAATGTTTCAGAGTAT+TGG - chr3_1:68128769-68128788 Msa0370420:intron 25.0%
! TTTACTGTAACATTATTTGC+TGG - chr3_1:68129120-68129139 Msa0370420:CDS 25.0%
!!! AAAAAAAGTACTTACTTCTC+CGG + chr3_1:68129442-68129461 None:intergenic 25.0%
! AGACTGAGATTAACAAAAAA+AGG - chr3_1:68129647-68129666 Msa0370420:intron 25.0%
! GACTGAGATTAACAAAAAAA+GGG - chr3_1:68129648-68129667 Msa0370420:intron 25.0%
!! GGGTCATAAATTGTAAATTT+TGG - chr3_1:68129703-68129722 Msa0370420:intron 25.0%
! CAAGGTAAGATAAACATATT+AGG - chr3_1:68129747-68129766 Msa0370420:intron 25.0%
! TAAGATAAACATATTAGGCT+CGG - chr3_1:68129752-68129771 Msa0370420:intron 25.0%
! TTTGTCTATTATATTGACAG+TGG - chr3_1:68129882-68129901 Msa0370420:intron 25.0%
!! TTTGAGTTTCTGATTATTTC+AGG - chr3_1:68130033-68130052 Msa0370420:intron 25.0%
! TTGAGTTTCTGATTATTTCA+GGG - chr3_1:68130034-68130053 Msa0370420:intron 25.0%
!! AAAGAAACAAAAAGCTTTTC+TGG - chr3_1:68130059-68130078 Msa0370420:intron 25.0%
! ATATCCAAAGCAGATAAAAA+TGG - chr3_1:68130136-68130155 Msa0370420:intron 25.0%
! TATCCAAAGCAGATAAAAAT+GGG - chr3_1:68130137-68130156 Msa0370420:intron 25.0%
! ATAGTAAAACATGTCAAAAG+AGG - chr3_1:68130166-68130185 Msa0370420:intron 25.0%
!!! AGGTTTAATTTGGGTTTTAT+AGG - chr3_1:68130356-68130375 Msa0370420:intron 25.0%
!! AGATCTTTTGCTTCAATTAA+AGG - chr3_1:68130396-68130415 Msa0370420:intron 25.0%
! AACAAAGAAATGTTAGCAAT+GGG - chr3_1:68130435-68130454 Msa0370420:intron 25.0%
!! ATTATTCTAGAAGTGAATTC+TGG + chr3_1:68130642-68130661 None:intergenic 25.0%
!! GAGCAAAAAAAAACTTTTGT+TGG + chr3_1:68130741-68130760 None:intergenic 25.0%
! TCATATTGCTGAAGTATAAA+TGG - chr3_1:68130858-68130877 Msa0370420:CDS 25.0%
!!! AATTGAACCAGTCATTTTTA+GGG + chr3_1:68130909-68130928 None:intergenic 25.0%
!!! AAATTGAACCAGTCATTTTT+AGG + chr3_1:68130910-68130929 None:intergenic 25.0%
!! TTTCGGTGATTAATTTTTGT+CGG + chr3_1:68130934-68130953 None:intergenic 25.0%
! TTTAATTCTTAAACACTTGC+AGG - chr3_1:68131049-68131068 Msa0370420:intron 25.0%
! ATCAGTATCAAATATTGTGA+TGG - chr3_1:68131117-68131136 Msa0370420:intron 25.0%
!!! TGTTTGGGAATTTTAAGAAA+AGG + chr3_1:68131374-68131393 None:intergenic 25.0%
! TCTTAAACATGTGTGTAAAA+TGG + chr3_1:68131513-68131532 None:intergenic 25.0%
! TAAGTAACCCGTTAATTTAT+TGG + chr3_1:68131579-68131598 None:intergenic 25.0%
!! TGTCGATGGAAAATATTTTA+AGG + chr3_1:68131709-68131728 None:intergenic 25.0%
!! TACAGACATAAATTTTTGCA+AGG + chr3_1:68131740-68131759 None:intergenic 25.0%
! AGAGTAAAGAAAAACATTAC+AGG - chr3_1:68131776-68131795 Msa0370420:CDS 25.0%
! ACTTTACCAATACTTATCAT+GGG - chr3_1:68131997-68132016 Msa0370420:intron 25.0%
! ATAATACCGGTCAAAATTAT+TGG - chr3_1:68132043-68132062 Msa0370420:CDS 25.0%
! AAGAAGTTAGAACTAATGAA+TGG - chr3_1:68132092-68132111 Msa0370420:intron 25.0%
! AGAAGTTAGAACTAATGAAT+GGG - chr3_1:68132093-68132112 Msa0370420:intron 25.0%
!! TTTTTCTTCGAATTAAAGTC+TGG - chr3_1:68132336-68132355 Msa0370420:intron 25.0%
!!! GATTATGCCATATATTTTTG+CGG + chr3_1:68132382-68132401 None:intergenic 25.0%
!! TAGTAGTTTGACTTTCTTTA+AGG + chr3_1:68132841-68132860 None:intergenic 25.0%
! TAAAGAAAGTCAAACTACTA+AGG - chr3_1:68132841-68132860 Msa0370420:CDS 25.0%
! AAAGAAAGTCAAACTACTAA+GGG - chr3_1:68132842-68132861 Msa0370420:CDS 25.0%
! CAAATATGTTACAACATGTT+CGG - chr3_1:68133160-68133179 Msa0370420:CDS 25.0%
! TAGCAAACTGCAAAAATAAA+TGG + chr3_1:68133354-68133373 None:intergenic 25.0%
!!! TTTATTTTTGCAGTTTGCTA+TGG - chr3_1:68133354-68133373 Msa0370420:CDS 25.0%
! TTATCTGTAGTGTATACAAT+TGG - chr3_1:68133528-68133547 Msa0370420:CDS 25.0%
! ATACAATTGGAATTGCATAT+AGG - chr3_1:68133541-68133560 Msa0370420:CDS 25.0%
!!! GGATTTTAGAATTCAAAACT+AGG + chr3_1:68133616-68133635 None:intergenic 25.0%
! TCCGAAAAAATAAGAGTTTA+TGG - chr3_1:68133633-68133652 Msa0370420:five_prime_UTR 25.0%
! GAAAAAATAAGAGTTTATGG+AGG - chr3_1:68133636-68133655 Msa0370420:five_prime_UTR 25.0%
GCACAAAGATTATTCTTTGA+AGG + chr3_1:68128190-68128209 None:intergenic 30.0%
TTTGGATAATTGCTTGAAAG+GGG + chr3_1:68128215-68128234 None:intergenic 30.0%
GATTTGGATAATTGCTTGAA+AGG + chr3_1:68128217-68128236 None:intergenic 30.0%
!! CTCATTTTTGTTGAAGTGTT+TGG + chr3_1:68128345-68128364 None:intergenic 30.0%
AAGATACTCATCAAACAGAT+AGG - chr3_1:68128424-68128443 Msa0370420:three_prime_UTR 30.0%
!!! ATTAGTTTTTTCCATAGAGG+AGG + chr3_1:68128480-68128499 None:intergenic 30.0%
AGTTCAAGAGAAATTGCAAT+TGG - chr3_1:68129006-68129025 Msa0370420:intron 30.0%
!!! GGAATTTTTCAAGTTGCATT+TGG - chr3_1:68129141-68129160 Msa0370420:CDS 30.0%
TAATTTAATCTGTTGCAGGT+TGG - chr3_1:68129239-68129258 Msa0370420:intron 30.0%
AATTTAATCTGTTGCAGGTT+GGG - chr3_1:68129240-68129259 Msa0370420:intron 30.0%
CGAAAGTAGAAACATATTTG+AGG - chr3_1:68129582-68129601 Msa0370420:intron 30.0%
!!! GAACTGTTTTTTGTTTGACA+AGG - chr3_1:68129729-68129748 Msa0370420:intron 30.0%
AAGATAAACATATTAGGCTC+GGG - chr3_1:68129753-68129772 Msa0370420:intron 30.0%
TTCCAATGACAAAATTCAGA+GGG + chr3_1:68129910-68129929 None:intergenic 30.0%
CCATAAATCTTGCAAACAAA+AGG + chr3_1:68129949-68129968 None:intergenic 30.0%
!! CCTTTTGTTTGCAAGATTTA+TGG - chr3_1:68129946-68129965 Msa0370420:intron 30.0%
GATAATATAACTGACACTAG+AGG + chr3_1:68130100-68130119 None:intergenic 30.0%
ATCCAAAGCAGATAAAAATG+GGG - chr3_1:68130138-68130157 Msa0370420:intron 30.0%
ATTCACCAATTACAACTCAA+TGG - chr3_1:68130205-68130224 Msa0370420:intron 30.0%
ATTAAAGGATACCATCTAGA+TGG - chr3_1:68130411-68130430 Msa0370420:intron 30.0%
TTAAAGGATACCATCTAGAT+GGG - chr3_1:68130412-68130431 Msa0370420:intron 30.0%
GAACAAAGAAATGTTAGCAA+TGG - chr3_1:68130434-68130453 Msa0370420:intron 30.0%
!!! TGAATTCTGGTTTTCTTCTT+GGG + chr3_1:68130629-68130648 None:intergenic 30.0%
!! TTTTGTTGGCACTTTTTGTT+AGG + chr3_1:68130727-68130746 None:intergenic 30.0%
TCTCTTATGTCAATTAATCC+TGG + chr3_1:68131235-68131254 None:intergenic 30.0%
!! TAAGAGAAGCTTGCTATATA+TGG - chr3_1:68131248-68131267 Msa0370420:intron 30.0%
! TTGTTTGTATCGGTAGAAAT+TGG - chr3_1:68131322-68131341 Msa0370420:intron 30.0%
!! CATGATAAGTATTGGTAAAG+TGG + chr3_1:68131998-68132017 None:intergenic 30.0%
CACTTTACCAATACTTATCA+TGG - chr3_1:68131996-68132015 Msa0370420:intron 30.0%
CTTTACCAATACTTATCATG+GGG - chr3_1:68131998-68132017 Msa0370420:intron 30.0%
ATCCACTAGTGTAATAATAC+CGG - chr3_1:68132030-68132049 Msa0370420:CDS 30.0%
!!! CTAATGAATGGGTTATTTTG+TGG - chr3_1:68132104-68132123 Msa0370420:intron 30.0%
AAGTGAGTTCCATCATAATT+TGG - chr3_1:68132139-68132158 Msa0370420:intron 30.0%
AAATCCATGCCAAATTATGA+TGG + chr3_1:68132151-68132170 None:intergenic 30.0%
TTCTCCAGTAGAATAGATTA+TGG - chr3_1:68132209-68132228 Msa0370420:intron 30.0%
TAGATTATGGTCCACATATA+TGG - chr3_1:68132222-68132241 Msa0370420:intron 30.0%
AGATTATGGTCCACATATAT+GGG - chr3_1:68132223-68132242 Msa0370420:intron 30.0%
GCTAAAACCGCAAAAATATA+TGG - chr3_1:68132372-68132391 Msa0370420:intron 30.0%
GCATAATCTCTTCGAATAAA+AGG - chr3_1:68132394-68132413 Msa0370420:intron 30.0%
TAATACAATCAATTCGACCT+GGG - chr3_1:68132526-68132545 Msa0370420:intron 30.0%
! ATATTGACTAACATCACAGA+AGG + chr3_1:68132586-68132605 None:intergenic 30.0%
TTACCTTTCTCTTACAACAT+TGG + chr3_1:68132679-68132698 None:intergenic 30.0%
AAGAAAGTCAAACTACTAAG+GGG - chr3_1:68132843-68132862 Msa0370420:CDS 30.0%
!! TACTTCTGGAATTATAGTAC+TGG - chr3_1:68133026-68133045 Msa0370420:intron 30.0%
TTACAACATGTTCGGATTAA+TGG - chr3_1:68133168-68133187 Msa0370420:CDS 30.0%
TTCGGATTAATGGTTAGATT+TGG - chr3_1:68133178-68133197 Msa0370420:CDS 30.0%
AGTAATTCACAAGCTTAAAG+TGG - chr3_1:68133393-68133412 Msa0370420:CDS 30.0%
CACACTTTGTGGATAAAATT+GGG - chr3_1:68133416-68133435 Msa0370420:CDS 30.0%
TGGATAAAATTGGGAAAGAA+TGG - chr3_1:68133425-68133444 Msa0370420:CDS 30.0%
GGATAAAATTGGGAAAGAAT+GGG - chr3_1:68133426-68133445 Msa0370420:CDS 30.0%
! TATATCACCCTACGTTATTT+TGG + chr3_1:68133699-68133718 None:intergenic 30.0%
TGATATAGAAACTAGTAGAG+TGG - chr3_1:68133712-68133731 Msa0370420:five_prime_UTR 30.0%
TGTCAATATATGTCTCCTAT+CGG - chr3_1:68133769-68133788 Msa0370420:five_prime_UTR 30.0%
TGTATCATCTCATTATCTTC+TGG - chr3_1:68133794-68133813 Msa0370420:five_prime_UTR 30.0%
! ATTGGGAAGCATAAATAGAG+AGG - chr3_1:68128056-68128075 Msa0370420:three_prime_UTR 35.0%
! TTGGGAAGCATAAATAGAGA+GGG - chr3_1:68128057-68128076 Msa0370420:three_prime_UTR 35.0%
TCAAGAGGGTCAATTTGATT+TGG + chr3_1:68128233-68128252 None:intergenic 35.0%
TCAAATCAGTGGACATTTAC+AGG + chr3_1:68128266-68128285 None:intergenic 35.0%
CATGTCAATTGTCAAATCAG+TGG + chr3_1:68128277-68128296 None:intergenic 35.0%
!! CTCATATTGAAAGCATCAGA+GGG + chr3_1:68128375-68128394 None:intergenic 35.0%
!! TCTCATATTGAAAGCATCAG+AGG + chr3_1:68128376-68128395 None:intergenic 35.0%
AATATGAGAGTCACAGAAGA+TGG - chr3_1:68128387-68128406 Msa0370420:three_prime_UTR 35.0%
! TTCATGGCAAGTTCTTTTCT+TGG + chr3_1:68128538-68128557 None:intergenic 35.0%
TATATACCTGAGGTATGCTT+AGG + chr3_1:68128668-68128687 None:intergenic 35.0%
GCAAAACTTGATCCTCAATA+TGG - chr3_1:68128805-68128824 Msa0370420:intron 35.0%
ATCTTCCTTATGTCACAAAG+TGG - chr3_1:68129056-68129075 Msa0370420:intron 35.0%
ATCAACCACTTTGTGACATA+AGG + chr3_1:68129064-68129083 None:intergenic 35.0%
!! AAGTTGCATTTGGAGTTTTC+AGG - chr3_1:68129151-68129170 Msa0370420:CDS 35.0%
AGAAACCACATCAGATTTGT+TGG + chr3_1:68129376-68129395 None:intergenic 35.0%
! ATCTGATGTGGTTTCTGTTT+TGG - chr3_1:68129380-68129399 Msa0370420:CDS 35.0%
ACTAACAAAGAACACACTCA+AGG + chr3_1:68129536-68129555 None:intergenic 35.0%
GTTCTTTGTTAGTAAACTCG+TGG - chr3_1:68129543-68129562 Msa0370420:intron 35.0%
AAAACTCACATAACATGGGT+GGG + chr3_1:68129840-68129859 None:intergenic 35.0%
CAGCAAAACTCACATAACAT+GGG + chr3_1:68129844-68129863 None:intergenic 35.0%
TCAGCAAAACTCACATAACA+TGG + chr3_1:68129845-68129864 None:intergenic 35.0%
! TACCCTCTGAATTTTGTCAT+TGG - chr3_1:68129905-68129924 Msa0370420:intron 35.0%
CTTCCAATGACAAAATTCAG+AGG + chr3_1:68129911-68129930 None:intergenic 35.0%
!! AACCCCATTTTTATCTGCTT+TGG + chr3_1:68130143-68130162 None:intergenic 35.0%
TGTAATTGGTGAATTGAGCT+TGG + chr3_1:68130199-68130218 None:intergenic 35.0%
! GTTCACCATTGAGTTGTAAT+TGG + chr3_1:68130213-68130232 None:intergenic 35.0%
!! TTGGGTTTTATAGGAAGCAA+TGG - chr3_1:68130365-68130384 Msa0370420:intron 35.0%
TTTCTTTGTTCCCATCTAGA+TGG + chr3_1:68130425-68130444 None:intergenic 35.0%
!! AAATGTTAGCAATGGGTTGT+GGG - chr3_1:68130442-68130461 Msa0370420:intron 35.0%
!!! GTGAATTCTGGTTTTCTTCT+TGG + chr3_1:68130630-68130649 None:intergenic 35.0%
TTGTGTATTTAGATGTCCGA+TGG + chr3_1:68130837-68130856 None:intergenic 35.0%
ATGGAATCAACCTTCTTAAG+CGG - chr3_1:68130877-68130896 Msa0370420:CDS 35.0%
GAGATTTCCCTAAAAATGAC+TGG - chr3_1:68130899-68130918 Msa0370420:intron 35.0%
TGTAACAGTGATTCTGTGTT+TGG - chr3_1:68131141-68131160 Msa0370420:intron 35.0%
! TGTGTTTGGAATTGTTCACA+AGG - chr3_1:68131155-68131174 Msa0370420:intron 35.0%
GAGGATTATTGAAGCAAGTA+TGG + chr3_1:68131203-68131222 None:intergenic 35.0%
! AAATAGGTTGGGTTGTGTTT+GGG + chr3_1:68131389-68131408 None:intergenic 35.0%
! AAAATAGGTTGGGTTGTGTT+TGG + chr3_1:68131390-68131409 None:intergenic 35.0%
CTTAATAGATTCAAGGTACG+TGG + chr3_1:68131545-68131564 None:intergenic 35.0%
! TATGATGGAACTCACTTGTT+AGG + chr3_1:68132136-68132155 None:intergenic 35.0%
AGTTCCATCATAATTTGGCA+TGG - chr3_1:68132144-68132163 Msa0370420:intron 35.0%
TGGACCATAATCTATTCTAC+TGG + chr3_1:68132216-68132235 None:intergenic 35.0%
GTATATGAGACCCATATATG+TGG + chr3_1:68132236-68132255 None:intergenic 35.0%
GTAATACAATCAATTCGACC+TGG - chr3_1:68132525-68132544 Msa0370420:intron 35.0%
TGATGTTAGTCAATATCCCA+TGG - chr3_1:68132590-68132609 Msa0370420:CDS 35.0%
ATGCCAATGTTGTAAGAGAA+AGG - chr3_1:68132673-68132692 Msa0370420:CDS 35.0%
ATTGTTCCAGAATACTCAAG+TGG - chr3_1:68132798-68132817 Msa0370420:intron 35.0%
TTGTTCCAGAATACTCAAGT+GGG - chr3_1:68132799-68132818 Msa0370420:intron 35.0%
TCATGTCCAATATTACAGCT+TGG + chr3_1:68132874-68132893 None:intergenic 35.0%
!! TTCTGGAATTATAGTACTGG+AGG - chr3_1:68133029-68133048 Msa0370420:intron 35.0%
GCACACTTTGTGGATAAAAT+TGG - chr3_1:68133415-68133434 Msa0370420:CDS 35.0%
GGTCAGCGAATTTATAAGAT+AGG + chr3_1:68133486-68133505 None:intergenic 35.0%
AAAAACGACCTGTGAAATCA+CGG + chr3_1:68133508-68133527 None:intergenic 35.0%
ATGAGATGATACAATCCGAT+AGG + chr3_1:68133787-68133806 None:intergenic 35.0%
! TGGGAAGCATAAATAGAGAG+GGG - chr3_1:68128058-68128077 Msa0370420:three_prime_UTR 40.0%
GGATTTATGCTCATCTTCAC+AGG - chr3_1:68128080-68128099 Msa0370420:three_prime_UTR 40.0%
TCTTGTGGCATCTCTTAGAT+TGG + chr3_1:68128140-68128159 None:intergenic 40.0%
CAGGACTAGATTTGTCAAGA+GGG + chr3_1:68128247-68128266 None:intergenic 40.0%
ACAGGACTAGATTTGTCAAG+AGG + chr3_1:68128248-68128267 None:intergenic 40.0%
ATCAAACAGATAGGACACAG+TGG - chr3_1:68128433-68128452 Msa0370420:three_prime_UTR 40.0%
!!! AGTTTTTTCCATAGAGGAGG+TGG + chr3_1:68128477-68128496 None:intergenic 40.0%
! ATCCTCAATATGGCTTGTGT+AGG - chr3_1:68128815-68128834 Msa0370420:intron 40.0%
TACCTACACAAGCCATATTG+AGG + chr3_1:68128820-68128839 None:intergenic 40.0%
ATCACAGCATAGATAAGAGG+AGG + chr3_1:68128982-68129001 None:intergenic 40.0%
TCCTCTTATCTATGCTGTGA+TGG - chr3_1:68128981-68129000 Msa0370420:intron 40.0%
CCTCTTATCTATGCTGTGAT+GGG - chr3_1:68128982-68129001 Msa0370420:intron 40.0%
CTCTTATCTATGCTGTGATG+GGG - chr3_1:68128983-68129002 Msa0370420:intron 40.0%
!! ATTGGTCTTCAGCAGCTTAA+GGG - chr3_1:68129327-68129346 Msa0370420:CDS 40.0%
CTTCACCAACAAATCTGATG+TGG - chr3_1:68129368-68129387 Msa0370420:CDS 40.0%
CTCCATCATCAAATTCCATC+CGG - chr3_1:68129420-68129439 Msa0370420:CDS 40.0%
! AAAGTACTTACTTCTCCGGA+TGG + chr3_1:68129438-68129457 None:intergenic 40.0%
AAACTCACATAACATGGGTG+GGG + chr3_1:68129839-68129858 None:intergenic 40.0%
CAAAACTCACATAACATGGG+TGG + chr3_1:68129841-68129860 None:intergenic 40.0%
GGTGAATTGAGCTTGGATTA+AGG + chr3_1:68130192-68130211 None:intergenic 40.0%
CAACTCAATGGTGAACATGT+TGG - chr3_1:68130217-68130236 Msa0370420:intron 40.0%
GTTGGACAAGCAGCTAAAAT+TGG - chr3_1:68130235-68130254 Msa0370420:intron 40.0%
TTATAGGAAGCAATGGCTGT+TGG - chr3_1:68130372-68130391 Msa0370420:intron 40.0%
!! GAAATGTTAGCAATGGGTTG+TGG - chr3_1:68130441-68130460 Msa0370420:intron 40.0%
ACTTCATGCTATGTTGCAAC+TGG - chr3_1:68130483-68130502 Msa0370420:intron 40.0%
TGTTGCAACTGGTAAGTGAT+TGG - chr3_1:68130494-68130513 Msa0370420:intron 40.0%
GCTGTTATATTACACACCTG+TGG - chr3_1:68131177-68131196 Msa0370420:intron 40.0%
! TTTGACTTCCTTGCTTGCAT+TGG - chr3_1:68131283-68131302 Msa0370420:intron 40.0%
!! CTTCGGTGTCTTGTTTGTAT+CGG - chr3_1:68131312-68131331 Msa0370420:intron 40.0%
GCAAGGATTCAAAATGTCGA+TGG + chr3_1:68131723-68131742 None:intergenic 40.0%
CAATACTTATCATGGGGTGA+GGG - chr3_1:68132004-68132023 Msa0370420:intron 40.0%
GACCGGTATTATTACACTAG+TGG + chr3_1:68132035-68132054 None:intergenic 40.0%
GGTAAAAAGACAAAGGAAGC+TGG - chr3_1:68132064-68132083 Msa0370420:intron 40.0%
AAAGACAAAGGAAGCTGGAT+AGG - chr3_1:68132069-68132088 Msa0370420:intron 40.0%
!!! TGAATGGGTTATTTTGTGGC+TGG - chr3_1:68132108-68132127 Msa0370420:intron 40.0%
TCTTGTTCTGTACTACCTTG+TGG - chr3_1:68132183-68132202 Msa0370420:intron 40.0%
CTTGTTCTGTACTACCTTGT+GGG - chr3_1:68132184-68132203 Msa0370420:intron 40.0%
TTGTTCTGTACTACCTTGTG+GGG - chr3_1:68132185-68132204 Msa0370420:intron 40.0%
TTGGTCATTCGTATAAGCTC+TGG - chr3_1:68132633-68132652 Msa0370420:CDS 40.0%
AAAGTCAAACTACTAAGGGG+AGG - chr3_1:68132846-68132865 Msa0370420:CDS 40.0%
AAGTCAAACTACTAAGGGGA+GGG - chr3_1:68132847-68132866 Msa0370420:CDS 40.0%
!! AAGTCCTCACTTTTATGCCA+CGG + chr3_1:68133077-68133096 None:intergenic 40.0%
TGTGAATTACTAGCCACCTT+GGG + chr3_1:68133384-68133403 None:intergenic 40.0%
TTGTGAATTACTAGCCACCT+TGG + chr3_1:68133385-68133404 None:intergenic 40.0%
ATAAGATAGGCATGCTTCCA+CGG + chr3_1:68133473-68133492 None:intergenic 40.0%
AAAACGACCTGTGAAATCAC+GGG + chr3_1:68133507-68133526 None:intergenic 40.0%
! GGGAAGCATAAATAGAGAGG+GGG - chr3_1:68128059-68128078 Msa0370420:three_prime_UTR 45.0%
GAGAGGATACTTGTGTCTTG+TGG + chr3_1:68128155-68128174 None:intergenic 45.0%
GAAGGCTATGTATGACTGAG+AGG + chr3_1:68128172-68128191 None:intergenic 45.0%
! TTCCATAGAGGAGGTGGATT+TGG + chr3_1:68128471-68128490 None:intergenic 45.0%
! TTGGTCTTCAGACACAAGTG+TGG - chr3_1:68128954-68128973 Msa0370420:intron 45.0%
CCCATCACAGCATAGATAAG+AGG + chr3_1:68128985-68129004 None:intergenic 45.0%
! TTGCAGGTTGGGATTTCTTG+TGG - chr3_1:68129251-68129270 Msa0370420:intron 45.0%
TTGTCACATGCTGCACTTGT+AGG - chr3_1:68129279-68129298 Msa0370420:intron 45.0%
TGCTGCACTTGTAGGATTCA+TGG - chr3_1:68129287-68129306 Msa0370420:CDS 45.0%
CTGCTGAAGACCAATCATGA+TGG + chr3_1:68129322-68129341 None:intergenic 45.0%
!! GATTGGTCTTCAGCAGCTTA+AGG - chr3_1:68129326-68129345 Msa0370420:CDS 45.0%
! TTGGTCTTCAGCAGCTTAAG+GGG - chr3_1:68129328-68129347 Msa0370420:CDS 45.0%
CTCCGGATGGAATTTGATGA+TGG + chr3_1:68129425-68129444 None:intergenic 45.0%
! CACGTTTGATGACAGACCAT+CGG - chr3_1:68130818-68130837 Msa0370420:CDS 45.0%
AGGGAAATCTCCGCTTAAGA+AGG + chr3_1:68130890-68130909 None:intergenic 45.0%
ATTGAAGCAAGTATGGCCAC+AGG + chr3_1:68131196-68131215 None:intergenic 45.0%
ATAATCCTCTCTGCACTTCC+AGG - chr3_1:68131214-68131233 Msa0370420:intron 45.0%
! TTAATCCTGGAAGTGCAGAG+AGG + chr3_1:68131222-68131241 None:intergenic 45.0%
!! AGAAAGCACCAATGCAAGCA+AGG + chr3_1:68131294-68131313 None:intergenic 45.0%
! GCTTGCATTGGTGCTTTCTT+CGG - chr3_1:68131295-68131314 Msa0370420:intron 45.0%
CCTCACCCCATGATAAGTAT+TGG + chr3_1:68132006-68132025 None:intergenic 45.0%
CCAATACTTATCATGGGGTG+AGG - chr3_1:68132003-68132022 Msa0370420:intron 45.0%
CTACCAAGAACTTCTATCCC+AGG + chr3_1:68132546-68132565 None:intergenic 45.0%
TCACAGAAGGCTTGTGTTGT+TGG + chr3_1:68132573-68132592 None:intergenic 45.0%
ATACGAATGACCAAGATGCC+TGG + chr3_1:68132627-68132646 None:intergenic 45.0%
AGTGACCCACTTGAGTATTC+TGG + chr3_1:68132807-68132826 None:intergenic 45.0%
GAGGGTCCAAGCTGTAATAT+TGG - chr3_1:68132865-68132884 Msa0370420:CDS 45.0%
!! AGTCCTCACTTTTATGCCAC+GGG + chr3_1:68133076-68133095 None:intergenic 45.0%
!! AGTTTGCTATGGTGAACCCA+AGG - chr3_1:68133365-68133384 Msa0370420:CDS 45.0%
GCTTAAAGTGGCACACTTTG+TGG - chr3_1:68133405-68133424 Msa0370420:CDS 45.0%
GAATTCAAAACTAGGCACGC+TGG + chr3_1:68133608-68133627 None:intergenic 45.0%
!! ATAAAATTAAAAAAAAACTA+AGG + chr3_1:68130312-68130331 None:intergenic 5.0%
!!! ACTATTTTTTTTTTATAAAT+TGG + chr3_1:68130978-68130997 None:intergenic 5.0%
!! ATAAAATGTTAATTAATTTA+GGG + chr3_1:68131876-68131895 None:intergenic 5.0%
CACCAAATCCACCTCCTCTA+TGG - chr3_1:68128466-68128485 Msa0370420:exon 50.0%
! TGCTAGCCTAAGCATACCTC+AGG - chr3_1:68128659-68128678 Msa0370420:intron 50.0%
AGCAGTGACACTACAGCTAC+TGG + chr3_1:68129033-68129052 None:intergenic 50.0%
GCACTTGTAGGATTCATGGC+AGG - chr3_1:68129291-68129310 Msa0370420:CDS 50.0%
AGCAGCTTAAGGGGTTGCTT+GGG - chr3_1:68129337-68129356 Msa0370420:CDS 50.0%
GACACTAGAGGAGCAATAGC+TGG + chr3_1:68130088-68130107 None:intergenic 50.0%
! ATGGGTTGTGGGAACATTGC+AGG - chr3_1:68130453-68130472 Msa0370420:intron 50.0%
CGACCTGGGATAGAAGTTCT+TGG - chr3_1:68132540-68132559 Msa0370420:CDS 50.0%
TACAAGCACTCCAGGCATCT+TGG - chr3_1:68132614-68132633 Msa0370420:CDS 50.0%
TACTGGAGGAACTGCACAAG+AGG - chr3_1:68133043-68133062 Msa0370420:intron 50.0%
TCTCCCGTGGCATAAAAGTG+AGG - chr3_1:68133070-68133089 Msa0370420:intron 50.0%
TTGCTATGGTGAACCCAAGG+TGG - chr3_1:68133368-68133387 Msa0370420:CDS 50.0%
CGCTGGATGACAAGAAACTC+TGG + chr3_1:68133591-68133610 None:intergenic 50.0%
GCAGGTGCAGCCATCATGAT+TGG - chr3_1:68129309-68129328 Msa0370420:CDS 55.0%
CAGCAGCTTAAGGGGTTGCT+TGG - chr3_1:68129336-68129355 Msa0370420:CDS 55.0%
TCTACTGGAGAAGCCCCACA+AGG + chr3_1:68132201-68132220 None:intergenic 55.0%
! CCTGGAGTGCTTGTAGCCAT+GGG + chr3_1:68132609-68132628 None:intergenic 55.0%
TGCTTCCACGGCTTCAGCAA+CGG + chr3_1:68133461-68133480 None:intergenic 55.0%
TCGCTGACCCGTGATTTCAC+AGG - chr3_1:68133497-68133516 Msa0370420:CDS 55.0%
CCCATGGCTACAAGCACTCC+AGG - chr3_1:68132606-68132625 Msa0370420:CDS 60.0%
! GCCTGGAGTGCTTGTAGCCA+TGG + chr3_1:68132610-68132629 None:intergenic 60.0%
CACAAGAGGTTGCTCTCCCG+TGG - chr3_1:68133057-68133076 Msa0370420:intron 60.0%
CCACGGCTTCAGCAACGGTA+AGG + chr3_1:68133456-68133475 None:intergenic 60.0%
CCTTACCGTTGCTGAAGCCG+TGG - chr3_1:68133453-68133472 Msa0370420:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 68128016 68133965 68128016 ID=Msa0370420;Name=Msa0370420
chr3_1 mRNA 68128016 68133965 68128016 ID=Msa0370420-mRNA-1;Parent=Msa0370420;Name=Msa0370420-mRNA-1;_AED=0.24;_eAED=0.24;_QI=344|1|1|1|1|1|12|455|660
chr3_1 exon 68128016 68128614 68128016 ID=Msa0370420-mRNA-1:exon:14235;Parent=Msa0370420-mRNA-1
chr3_1 exon 68128895 68128971 68128895 ID=Msa0370420-mRNA-1:exon:14234;Parent=Msa0370420-mRNA-1
chr3_1 exon 68129085 68129173 68129085 ID=Msa0370420-mRNA-1:exon:14233;Parent=Msa0370420-mRNA-1
chr3_1 exon 68129287 68129480 68129287 ID=Msa0370420-mRNA-1:exon:14232;Parent=Msa0370420-mRNA-1
chr3_1 exon 68130624 68130910 68130624 ID=Msa0370420-mRNA-1:exon:14231;Parent=Msa0370420-mRNA-1
chr3_1 exon 68131477 68131603 68131477 ID=Msa0370420-mRNA-1:exon:14230;Parent=Msa0370420-mRNA-1
chr3_1 exon 68131696 68131926 68131696 ID=Msa0370420-mRNA-1:exon:14229;Parent=Msa0370420-mRNA-1
chr3_1 exon 68132014 68132079 68132014 ID=Msa0370420-mRNA-1:exon:14228;Parent=Msa0370420-mRNA-1
chr3_1 exon 68132535 68132724 68132535 ID=Msa0370420-mRNA-1:exon:14227;Parent=Msa0370420-mRNA-1
chr3_1 exon 68132809 68133016 68132809 ID=Msa0370420-mRNA-1:exon:14226;Parent=Msa0370420-mRNA-1
chr3_1 exon 68133149 68133197 68133149 ID=Msa0370420-mRNA-1:exon:14225;Parent=Msa0370420-mRNA-1
chr3_1 exon 68133301 68133965 68133301 ID=Msa0370420-mRNA-1:exon:14224;Parent=Msa0370420-mRNA-1
chr3_1 five_prime_UTR 68133622 68133965 68133622 ID=Msa0370420-mRNA-1:five_prime_utr;Parent=Msa0370420-mRNA-1
chr3_1 CDS 68133301 68133621 68133301 ID=Msa0370420-mRNA-1:cds;Parent=Msa0370420-mRNA-1
chr3_1 CDS 68133149 68133197 68133149 ID=Msa0370420-mRNA-1:cds;Parent=Msa0370420-mRNA-1
chr3_1 CDS 68132809 68133016 68132809 ID=Msa0370420-mRNA-1:cds;Parent=Msa0370420-mRNA-1
chr3_1 CDS 68132535 68132724 68132535 ID=Msa0370420-mRNA-1:cds;Parent=Msa0370420-mRNA-1
chr3_1 CDS 68132014 68132079 68132014 ID=Msa0370420-mRNA-1:cds;Parent=Msa0370420-mRNA-1
chr3_1 CDS 68131696 68131926 68131696 ID=Msa0370420-mRNA-1:cds;Parent=Msa0370420-mRNA-1
chr3_1 CDS 68131477 68131603 68131477 ID=Msa0370420-mRNA-1:cds;Parent=Msa0370420-mRNA-1
chr3_1 CDS 68130624 68130910 68130624 ID=Msa0370420-mRNA-1:cds;Parent=Msa0370420-mRNA-1
chr3_1 CDS 68129287 68129480 68129287 ID=Msa0370420-mRNA-1:cds;Parent=Msa0370420-mRNA-1
chr3_1 CDS 68129085 68129173 68129085 ID=Msa0370420-mRNA-1:cds;Parent=Msa0370420-mRNA-1
chr3_1 CDS 68128895 68128971 68128895 ID=Msa0370420-mRNA-1:cds;Parent=Msa0370420-mRNA-1
chr3_1 CDS 68128471 68128614 68128471 ID=Msa0370420-mRNA-1:cds;Parent=Msa0370420-mRNA-1
chr3_1 three_prime_UTR 68128016 68128470 68128016 ID=Msa0370420-mRNA-1:three_prime_utr;Parent=Msa0370420-mRNA-1
Gene Sequence

>Msa0370420

ATGAGTTCATTACCCTCTGATGCTTTCAATATGAGAGTCACAGAAGATGGAAATCTTCATCTTGAAGATACTCATCAAACAGATAGGACACAGTGGATGCTAAATTCACCAAATCCACCTCCTCTATGGAAAAAACTAATTACTCCACTTAAGAATAACAAGTTCTTTTCTTCATCCAAGAAAAGAACTTGCCATGAACATGTTTTTTCTTTCTTTAGTGGTTTATTTCCAATACTTAGCTTGTTCAAAAACTATGATGCTTTCAAGTTTAAAGATGATTTTCTAGCAGGTTTAACTCTTGCTAGCCTAAGCATACCTCAGAGTATTGGTTATGCTAATTTAGCAAAACTTGATCCTCAATATGGCTTGTACACAAGTGTGGTTCCTCCTCTTATCTATGCTGTGATGGGGAGTTCAAGAGAAATTGCAATTGGACCAGTAGCTGTAGTGTCACTGCTGCTATCTTCCTTATGTCACAAAGTGGTTGATCCAGATTTAAATCATGATGATTACAGAAATTTTGTATTTACTGTAACATTATTTGCTGGAATTTTTCAAGTTGCATTTGGAGTTTTCAGGTTGGGATTTCTTGTGGATTTTTTGTCACATGCTGCACTTGTAGGATTCATGGCAGGTGCAGCCATCATGATTGGTCTTCAGCAGCTTAAGGGGTTGCTTGGGATTAGTAACTTCACCAACAAATCTGATGTGGTTTCTGTTTTGGAATCTGTTTATAAGTCACTCCATCATCAAATTCCATCCGGAGAATGGTACCCTCTGAATTTTGTCATTGGAAGTTCATTTCTGATTTTCCTTTTGTTTGCAAGATTTATGGGAAAAAGAAACAAAAAGCTTTTCTGGTTGCCAGCTATTGCTCCTCTAGTGTCAGTTATATTATCAACTTTTATTGTGTATATATCCAAAGCAGATAAAAATGGGGTTAATATAGTAAAACATGTCAAAAGAGGCCTTAATCCAAGCTCAATTCACCAATTACAACTCAATGGTGAACATGTTGGACAAGCAGCTAAAATTGGATTGATTTCTGCTGTTATTGCTCTCACTGAAGCAATGGCTGTTGGTAGATCTTTTGCTTCAATTAAAGGATACCATCTAGATGGGAACAAAGAAATGTTAGCAATGGGTTGTGGGAACATTGCAGGATCTTTCACTTCATGCTATGTTGCAACTGGTTCATTTTCAAGAACTGCAGTAAATTTCAGTGCAAGATGTCAATCATCAGTATCAAATATTGTGATGGCTGTAACAGTGATTCTGTGTTTGGAATTGTTCACAAGGCTGTTATATTACACACCTGTGGCCATACTTGCTTCAATAATCCTCTCTGCACTTCCAGGATTAATTGACATAAGAGAAGCTTGCTATATATGGAAAGTTGACAAATTTGACTTCCTTGCTTGCATTGGTGCTTTCTTCGGTGTCTTGTTTGTATCGGTAGAAATTGGTCTTCTTGTTGCAGTGTCAATCTCGTTTGCAAAGATAGTAATACAATCAATTCGACCTGGGATAGAAGTTCTTGGTAGAATTCCAACAACACAAGCCTTCTGTGATGTTAGTCAATATCCCATGGCTACAAGCACTCCAGGCATCTTGGTCATTCGTATAAGCTCTGGCTCACTCTGCTTTGCAAATGCCAATGTTGTAAGAGAAAGAATACTCAAGTGGGTCACTGAAGAAGATGACCTTAAAGAAAGTCAAACTACTAAGGGGAGGGTCCAAGCTGTAATATTGGACATGACTAATTTGATGAATGTTGATACTTCTGGAATTATAGTACTGGAGGAACTGCACAAGAGGTTGCTCTCCCGTGGCATAAAATTTGCTATGGTGAACCCAAGGTGGCTAGTAATTCACAAGCTTAAAGTGGCACACTTTGTGGATAAAATTGGGAAAGAATGGGTTTTCCTTACCGTTGCTGAAGCCGTGGAAGCATGCCTATCTTATAAATTCGCTGACCCGTGA
Protein sequence

>Msa0370420

MSSLPSDAFNMRVTEDGNLHLEDTHQTDRTQWMLNSPNPPPLWKKLITPLKNNKFFSSSKKRTCHEHVFSFFSGLFPILSLFKNYDAFKFKDDFLAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVVPPLIYAVMGSSREIAIGPVAVVSLLLSSLCHKVVDPDLNHDDYRNFVFTVTLFAGIFQVAFGVFRLGFLVDFLSHAALVGFMAGAAIMIGLQQLKGLLGISNFTNKSDVVSVLESVYKSLHHQIPSGEWYPLNFVIGSSFLIFLLFARFMGKRNKKLFWLPAIAPLVSVILSTFIVYISKADKNGVNIVKHVKRGLNPSSIHQLQLNGEHVGQAAKIGLISAVIALTEAMAVGRSFASIKGYHLDGNKEMLAMGCGNIAGSFTSCYVATGSFSRTAVNFSARCQSSVSNIVMAVTVILCLELFTRLLYYTPVAILASIILSALPGLIDIREACYIWKVDKFDFLACIGAFFGVLFVSVEIGLLVAVSISFAKIVIQSIRPGIEVLGRIPTTQAFCDVSQYPMATSTPGILVIRISSGSLCFANANVVRERILKWVTEEDDLKESQTTKGRVQAVILDMTNLMNVDTSGIIVLEELHKRLLSRGIKFAMVNPRWLVIHKLKVAHFVDKIGKEWVFLTVAEAVEACLSYKFADP*