AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0383880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383880 MtrunA17_Chr3g0140531 97.028 471 14 0 1 471 1 471 0.0 939
Msa0383880 MtrunA17_Chr1g0146331 68.845 459 140 2 14 471 10 466 0.0 677
Msa0383880 MtrunA17_Chr2g0293331 68.202 456 143 1 16 471 4 457 0.0 672
Msa0383880 MtrunA17_Chr1g0146391 67.467 458 147 1 14 471 2 457 0.0 656
Msa0383880 MtrunA17_Chr1g0146411 57.113 471 193 4 2 470 9 472 0.0 553
Msa0383880 MtrunA17_Chr3g0140541 57.447 470 195 2 1 470 5 469 0.0 542
Msa0383880 MtrunA17_Chr3g0140761 52.391 460 217 2 14 471 23 482 0.0 516
Msa0383880 MtrunA17_Chr1g0146491 51.193 461 223 2 13 471 12 472 6.38e-179 509
Msa0383880 MtrunA17_Chr8g0384661 52.772 451 208 3 18 467 44 490 8.42e-173 494
Msa0383880 MtrunA17_Chr1g0206871 52.088 455 207 3 23 467 14 467 1.43e-168 483
Msa0383880 MtrunA17_Chr4g0037201 49.467 469 231 2 5 467 40 508 2.05e-168 484
Msa0383880 MtrunA17_Chr3g0125081 49.028 463 231 3 7 467 16 475 2.28e-166 478
Msa0383880 MtrunA17_Chr3g0125101 48.491 464 233 4 7 467 16 476 3.90e-163 469
Msa0383880 MtrunA17_Chr1g0159761 50.108 463 228 2 7 467 10 471 5.14e-163 469
Msa0383880 MtrunA17_Chr3g0125091 47.957 465 234 5 7 467 16 476 2.89e-162 467
Msa0383880 MtrunA17_Chr3g0130641 47.403 462 232 4 10 467 19 473 9.32e-157 453
Msa0383880 MtrunA17_Chr3g0130651 50.000 470 226 6 1 467 1 464 1.02e-152 442
Msa0383880 MtrunA17_Chr3g0103211 45.805 441 235 2 18 457 17 454 2.63e-145 423
Msa0383880 MtrunA17_Chr3g0103231 43.886 458 252 3 1 457 1 454 2.50e-144 421
Msa0383880 MtrunA17_Chr3g0103221 45.291 446 240 2 21 465 27 469 7.13e-143 417
Msa0383880 MtrunA17_Chr5g0447221 44.521 438 235 5 23 457 28 460 4.02e-134 395
Msa0383880 MtrunA17_Chr3g0103271 41.485 458 263 3 2 457 5 459 9.20e-124 369
Msa0383880 MtrunA17_Chr1g0206851 50.137 365 174 3 105 467 19 377 7.25e-123 363
Msa0383880 MtrunA17_Chr5g0447231 39.359 437 260 3 23 457 24 457 5.12e-109 330
Msa0383880 MtrunA17_Chr1g0206831 50.301 332 157 3 137 466 14 339 3.05e-105 317
Msa0383880 MtrunA17_Chr3g0103251 40.278 360 188 3 128 460 11 370 1.28e-96 296
Msa0383880 MtrunA17_Chr5g0402151 48.986 296 117 4 27 322 3 264 1.50e-87 269
Msa0383880 MtrunA17_Chr1g0206821 53.086 243 113 1 13 254 11 253 1.60e-81 261
Msa0383880 MtrunA17_Chr1g0206821 52.558 215 101 1 254 467 313 527 5.38e-75 244
Msa0383880 MtrunA17_Chr3g0130671 46.288 229 121 2 4 232 20 246 1.39e-63 207
Msa0383880 MtrunA17_Chr3g0130661 47.778 180 90 2 289 467 1 177 9.47e-57 186
Msa0383880 MtrunA17_Chr6g0458931 25.586 469 310 12 4 467 20 454 3.40e-41 152
Msa0383880 MtrunA17_Chr2g0331721 27.045 440 275 15 2 432 23 425 1.56e-38 145
Msa0383880 MtrunA17_Chr4g0057851 27.295 414 262 9 24 433 10 388 1.98e-38 144
Msa0383880 MtrunA17_Chr8g0376991 25.949 474 305 13 1 467 1 435 1.78e-37 142
Msa0383880 MtrunA17_Chr1g0184721 25.751 466 305 13 10 467 5 437 8.81e-37 140
Msa0383880 MtrunA17_Chr3g0077651 27.740 447 290 9 24 467 52 468 6.59e-35 135
Msa0383880 MtrunA17_Chr1g0146351 56.311 103 44 1 34 136 13 114 7.73e-34 123
Msa0383880 MtrunA17_Chr1g0206861 61.957 92 35 0 14 105 11 102 1.26e-33 124
Msa0383880 MtrunA17_Chr4g0027241 27.803 446 266 15 3 425 10 422 1.85e-33 131
Msa0383880 MtrunA17_Chr5g0422741 27.468 466 290 12 13 467 10 438 1.06e-32 129
Msa0383880 MtrunA17_Chr1g0206841 53.333 105 46 1 1 105 1 102 1.64e-32 119
Msa0383880 MtrunA17_Chr3g0103261 43.704 135 75 1 1 135 1 134 4.11e-32 120
Msa0383880 MtrunA17_Chr1g0198541 26.724 464 300 12 8 467 9 436 3.48e-31 124
Msa0383880 MtrunA17_Chr3g0122921 24.528 477 292 15 6 467 4 427 1.31e-30 123
Msa0383880 MtrunA17_Chr2g0328081 25.895 475 292 11 4 467 2 427 1.70e-29 119
Msa0383880 MtrunA17_Chr1g0198531 25.581 473 309 12 1 467 1 436 3.47e-29 119
Msa0383880 MtrunA17_Chr6g0458921 26.022 465 292 11 14 467 4 427 8.19e-29 117
Msa0383880 MtrunA17_Chr6g0459011 25.472 424 273 10 40 457 1 387 1.82e-28 116
Msa0383880 MtrunA17_Chr6g0459031 25.586 469 294 12 10 467 3 427 1.92e-27 114
Msa0383880 MtrunA17_Chr7g0230011 24.946 465 306 13 10 467 14 442 1.93e-26 111
Msa0383880 MtrunA17_Chr1g0198081 24.160 476 321 14 2 467 33 478 6.33e-26 110
Msa0383880 MtrunA17_Chr3g0143701 24.890 454 302 11 15 457 73 498 9.06e-26 110
Msa0383880 MtrunA17_Chr6g0459021 24.009 454 294 11 24 467 34 446 2.71e-25 108
Msa0383880 MtrunA17_Chr4g0038711 27.692 455 279 15 24 460 70 492 1.70e-23 103
Msa0383880 MtrunA17_Chr8g0387941 23.126 467 321 11 10 467 10 447 3.46e-23 102
Msa0383880 MtrunA17_Chr6g0459001 24.319 477 305 12 24 467 22 475 5.85e-22 98.6
Msa0383880 MtrunA17_Chr2g0281341 22.414 464 299 13 24 467 95 517 1.05e-13 73.2
Msa0383880 MtrunA17_Chr5g0406331 22.926 458 311 14 24 470 86 512 1.38e-13 72.8
Msa0383880 MtrunA17_Chr5g0436281 21.635 416 284 11 55 467 4 380 3.25e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383880 AT1G10010.1 53.084 454 212 1 15 467 18 471 0.0 533
Msa0383880 AT1G10010.2 53.084 454 212 1 15 467 19 472 0.0 533
Msa0383880 AT1G58360.1 53.407 455 211 1 14 467 26 480 0.0 523
Msa0383880 AT5G49630.1 52.401 479 215 5 1 467 1 478 1.39e-179 511
Msa0383880 AT5G09220.1 50.885 452 219 2 18 467 39 489 1.13e-169 487
Msa0383880 AT5G63850.1 50.221 452 222 2 18 467 12 462 1.22e-164 473
Msa0383880 AT1G44100.1 48.614 469 227 3 9 467 12 476 2.47e-164 473
Msa0383880 AT1G77380.1 49.451 455 228 2 14 467 19 472 2.21e-160 462
Msa0383880 AT5G23810.1 44.820 444 236 4 20 457 21 461 3.03e-124 370
Msa0383880 AT5G23810.2 46.789 327 168 3 20 343 21 344 2.10e-96 295
Msa0383880 AT5G23810.4 44.118 238 127 3 20 254 21 255 3.24e-60 198
Msa0383880 AT5G23810.5 48.168 191 96 2 20 207 21 211 8.86e-53 177
Msa0383880 AT5G23810.3 48.168 191 96 2 20 207 21 211 8.86e-53 177
Msa0383880 AT1G24400.1 26.850 473 302 11 1 467 6 440 1.95e-40 150
Msa0383880 AT5G40780.1 24.947 473 309 13 2 467 12 445 3.61e-37 142
Msa0383880 AT1G61270.1 27.527 465 290 11 5 454 2 434 5.77e-37 141
Msa0383880 AT1G48640.1 27.039 466 287 14 14 467 28 452 1.05e-36 140
Msa0383880 AT1G67640.1 26.415 477 304 11 1 467 1 440 1.19e-35 137
Msa0383880 AT3G01760.1 27.865 445 283 12 24 463 31 442 1.29e-35 137
Msa0383880 AT5G40780.3 25.173 433 283 11 40 467 1 397 8.04e-35 134
Msa0383880 AT5G40780.2 25.173 433 283 11 40 467 1 397 8.04e-35 134
Msa0383880 AT1G71680.1 26.598 485 292 13 2 467 8 447 9.47e-35 135
Msa0383880 AT1G71680.2 28.375 363 206 11 2 342 8 338 5.70e-32 125
Msa0383880 AT1G25530.1 27.679 448 285 12 24 467 27 439 1.68e-30 123
Msa0383880 AT1G08230.2 25.466 483 309 16 1 467 1 448 1.72e-25 108
Msa0383880 AT5G41800.1 23.348 454 307 11 23 467 25 446 5.32e-21 95.9
Msa0383880 AT3G55740.1 22.749 422 272 12 55 467 60 436 6.41e-16 80.1
Msa0383880 AT1G08230.3 26.875 320 195 11 160 467 56 348 9.54e-16 79.0
Msa0383880 AT3G55740.2 22.749 422 272 12 55 467 4 380 1.07e-15 79.0
Msa0383880 AT3G55740.3 22.749 422 272 12 55 467 4 380 1.07e-15 79.0
Msa0383880 AT1G08230.4 26.875 320 195 11 160 467 37 329 1.27e-15 78.2
Msa0383880 AT1G08230.6 26.875 320 195 11 160 467 37 329 1.27e-15 78.2
Msa0383880 AT1G08230.5 26.875 320 195 11 160 467 37 329 1.27e-15 78.2
Msa0383880 AT2G39890.2 23.741 417 274 14 55 467 63 439 1.61e-15 79.0
Msa0383880 AT2G39890.1 23.741 417 274 14 55 467 63 439 1.61e-15 79.0
Msa0383880 AT2G39890.3 23.741 417 274 14 55 467 4 380 2.82e-15 77.8
Msa0383880 AT2G36590.1 22.043 372 250 10 55 424 57 390 3.03e-13 72.0
Msa0383880 AT4G35180.1 24.722 449 254 17 19 432 42 441 5.43e-12 68.2

Find 181 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTCTGGTTGGTTGCTTT+GGG 0.120510 3_1:+86923550 Msa0383880:CDS
AATGTTAACTTATGGAAATT+TGG 0.155373 3_1:-86922896 None:intergenic
TCAACTTATTTAGACTAATT+TGG 0.167184 3_1:+86923832 Msa0383880:CDS
TGCTTGGAGCATTTGGATTT+TGG 0.172242 3_1:+86923925 Msa0383880:CDS
TATCAGAAGAAGACAAAATT+TGG 0.185241 3_1:+86923181 Msa0383880:CDS
TGCCAACATTATCGTAGTTT+TGG 0.199946 3_1:-86919852 None:intergenic
GCCCTTCTGGTTGGTTGCTT+TGG 0.204187 3_1:+86923549 Msa0383880:CDS
ATATATTATGTCATGTCTTT+TGG 0.227629 3_1:+86920224 Msa0383880:five_prime_UTR
TTTCTCATCTGTGTGCTTTC+CGG 0.236560 3_1:-86923406 None:intergenic
TGGAATCAATTTGAAAATTT+CGG 0.236834 3_1:+86919246 Msa0383880:five_prime_UTR
GGGAACATCCTCACTGGTTT+TGG 0.241475 3_1:+86923517 Msa0383880:CDS
AATCCTTACATGCTCGGTTT+TGG 0.247257 3_1:+86922845 Msa0383880:CDS
CTTGCATTGCTTGGAGCATT+TGG 0.251558 3_1:+86923918 Msa0383880:CDS
GCCTGCTGATACGGCAAATA+AGG 0.254571 3_1:+86919889 Msa0383880:five_prime_UTR
TTCATTTAGCGCAAAATATA+TGG 0.259736 3_1:-86919739 None:intergenic
TTGATATCAATGTTAACTTA+TGG 0.271388 3_1:-86922904 None:intergenic
AATCTGAATCTTTATCTAAA+TGG 0.287445 3_1:+86921202 Msa0383880:exon
GAAGAACACCCAAACAAAAT+TGG 0.287814 3_1:+86923792 Msa0383880:CDS
AAAACTTGCAATAAGCTTCA+TGG 0.288812 3_1:-86922817 None:intergenic
ATGTTAACTTATGGAAATTT+GGG 0.301767 3_1:-86922895 None:intergenic
GAGGACAATATTTGTGATAA+TGG 0.301794 3_1:+86923854 Msa0383880:CDS
GGAGAAAGAACCAGTTTGTT+TGG 0.303768 3_1:+86923138 Msa0383880:CDS
AAGATTCTGGATACACGTTT+TGG 0.310664 3_1:+86919399 Msa0383880:five_prime_UTR
ATTTCAACTATACGAAATAT+TGG 0.312065 3_1:-86923729 None:intergenic
TGGACATATCCGGAAGATTC+TGG 0.312648 3_1:+86919386 Msa0383880:five_prime_UTR
GCGTGTTCAGACGTAATAAT+TGG 0.315593 3_1:-86924286 None:intergenic
CCATATGGTAGGAGCATATC+AGG 0.321505 3_1:+86923591 Msa0383880:CDS
GTTGCTGCAATTACCTCTTT+TGG 0.324708 3_1:+86922929 Msa0383880:CDS
AATATTTCGTATAGTTGAAA+TGG 0.334003 3_1:+86923731 Msa0383880:CDS
GCTGCAGTTGGTTCCATTCA+TGG 0.337754 3_1:+86924068 Msa0383880:CDS
GAGGTTATATATAGCCTTAT+AGG 0.341715 3_1:-86920158 None:intergenic
CTCTTGCCATTAACCGAGTC+TGG 0.346028 3_1:-86922103 None:intergenic
AACAATAGCCTATTTCAAAA+TGG 0.348097 3_1:+86924132 Msa0383880:exon
AACGAGTTTCTTGCATTGCT+TGG 0.351193 3_1:+86923909 Msa0383880:CDS
TATGTCAATGTCAGTGGTAT+TGG 0.352491 3_1:-86919662 None:intergenic
AGATATCCAGACTCGGTTAA+TGG 0.352529 3_1:+86922097 Msa0383880:CDS
TCACTTGGCTATGCTGCATT+TGG 0.358697 3_1:+86923481 Msa0383880:CDS
TAATATAGTTCTATATAGTT+TGG 0.359888 3_1:-86918916 None:intergenic
AAGGAGTAACGTAACCTATA+AGG 0.364884 3_1:+86920144 Msa0383880:five_prime_UTR
TATCTAAATGGAGGCTGAAA+AGG 0.368758 3_1:+86921214 Msa0383880:exon
TACTGTTGTCTATGATATAA+TGG 0.373164 3_1:+86923251 Msa0383880:CDS
TAATATATTTGTAGTTATAC+AGG 0.373732 3_1:-86920209 None:intergenic
ATGAGAAAGGCAAATGTGTT+GGG 0.381443 3_1:+86923421 Msa0383880:CDS
ATTGTAAGTGTAAATAGAAA+TGG 0.388984 3_1:-86922056 None:intergenic
AATAACAGCCATAACTATAA+TGG 0.389998 3_1:-86919005 None:intergenic
TAAACAATGATCATGTTTAG+AGG 0.401005 3_1:-86919594 None:intergenic
TGGTTAAACTATGGCTGTTA+TGG 0.401707 3_1:+86918967 Msa0383880:five_prime_UTR
TACTTTGGTTCCAAACAAAC+TGG 0.405444 3_1:-86923148 None:intergenic
TCCTTATTTGCCGTATCAGC+AGG 0.410318 3_1:-86919890 None:intergenic
TGCTAAGTTCACCGGAGAAC+AGG 0.415496 3_1:+86920357 Msa0383880:five_prime_UTR
ACAGTTAGCCATTATAGTTA+TGG 0.415651 3_1:+86918997 Msa0383880:five_prime_UTR
AGTAATAATACTCATGGTAT+TGG 0.417123 3_1:-86919701 None:intergenic
ATTCTTACTAATTCCATGAA+TGG 0.418096 3_1:-86924081 None:intergenic
ACCATCCAGTTGTAACTGAA+TGG 0.421040 3_1:-86918948 None:intergenic
ATCCCAAAACCGAGCATGTA+AGG 0.421442 3_1:-86922848 None:intergenic
TCTCTAGCAGTTGTGGTGTC+AGG 0.423733 3_1:+86922977 Msa0383880:CDS
TGATAACCTTGGTCCTACTT+TGG 0.426891 3_1:-86923163 None:intergenic
ACAACTGGATGGTTAAACTA+TGG 0.436828 3_1:+86918958 Msa0383880:five_prime_UTR
TGAGTAATTGTTTGTGCTCA+AGG 0.439001 3_1:-86918878 None:intergenic
CCTGATATGCTCCTACCATA+TGG 0.439103 3_1:-86923591 None:intergenic
GGTGGTGGGTGCAGGAGTGT+TGG 0.440169 3_1:+86921967 Msa0383880:CDS
GTTTCTTAATTGGACATATC+CGG 0.440176 3_1:+86919376 Msa0383880:five_prime_UTR
TCAAATAATCCTTACATGCT+CGG 0.443237 3_1:+86922839 Msa0383880:CDS
CAGGAGTGTTGGCTCTAGCA+TGG 0.444476 3_1:+86921978 Msa0383880:CDS
AACAAACAAGACTCAATAGT+TGG 0.446187 3_1:-86924028 None:intergenic
TTCCTCCTATGTGGTTCACT+TGG 0.448096 3_1:+86923466 Msa0383880:CDS
AATTGATTCCATGAGAAGCT+TGG 0.448955 3_1:-86919234 None:intergenic
TTTGATTAAAACTAGTTAGT+GGG 0.452131 3_1:-86919631 None:intergenic
GCATTTGGTGATCACACTCC+AGG 0.452200 3_1:+86923496 Msa0383880:CDS
ATAACAGTGGTGGTGGGTGC+AGG 0.463122 3_1:+86921959 Msa0383880:CDS
ATTTGATTAAAACTAGTTAG+TGG 0.464634 3_1:-86919632 None:intergenic
AAACTCAAAGCCTGCTGATA+CGG 0.469154 3_1:+86919880 Msa0383880:five_prime_UTR
CAAATAAGGATCCATTTACT+TGG 0.469419 3_1:+86919903 Msa0383880:five_prime_UTR
GGTTATGCATTAATTGGAAG+TGG 0.469904 3_1:+86922950 Msa0383880:CDS
ATATTTCGTATAGTTGAAAT+GGG 0.469932 3_1:+86923732 Msa0383880:CDS
GAGAGATGTGCATTTGTATC+GGG 0.470377 3_1:-86923965 None:intergenic
GACGGAAGAATCAAGAGAAC+CGG 0.473000 3_1:+86921278 Msa0383880:CDS
TGAGAGATGTGCATTTGTAT+CGG 0.473205 3_1:-86923966 None:intergenic
AGTTTGTTTGGAACCAAAGT+AGG 0.474169 3_1:+86923150 Msa0383880:CDS
CTAGTTAGTGGGGAGGGGAT+AGG 0.475973 3_1:-86919620 None:intergenic
ATTCAGTATGGGAAACTCGC+TGG 0.477343 3_1:+86922401 Msa0383880:CDS
TGTATGCATTATAGTCCATA+TGG 0.479211 3_1:+86923576 Msa0383880:CDS
TCCTTTCTCCAAGCTTCTCA+TGG 0.482293 3_1:+86919226 Msa0383880:five_prime_UTR
ATCTAAATGGAGGCTGAAAA+GGG 0.484463 3_1:+86921215 Msa0383880:exon
CCTTCTGGTTGGTTGCTTTG+GGG 0.485026 3_1:+86923551 Msa0383880:CDS
GTTTCAGTAGCTGCTGCAGT+TGG 0.487316 3_1:+86924056 Msa0383880:CDS
AACGTGTATCCAGAATCTTC+CGG 0.487627 3_1:-86919395 None:intergenic
CTCATCTGTGTGCTTTCCGG+TGG 0.491821 3_1:-86923403 None:intergenic
TACGTTACTCCTTTAAAAGC+CGG 0.494313 3_1:-86920134 None:intergenic
ATACAAGATAAATAGTCTCT+TGG 0.498155 3_1:-86920041 None:intergenic
ATAATACTCATGGTATTGGT+GGG 0.504700 3_1:-86919697 None:intergenic
CTTTCATTCCAATCAATCAA+AGG 0.505510 3_1:+86919466 Msa0383880:five_prime_UTR
GCAAGAAACTCGTTGAAGAA+TGG 0.506573 3_1:-86923900 None:intergenic
ATACCATGAGTATTATTACT+TGG 0.508565 3_1:+86919704 Msa0383880:five_prime_UTR
AACGAAAACGCGTTTACTTG+AGG 0.509209 3_1:-86919356 None:intergenic
TGCAATTGATTCTCGCTGCA+TGG 0.512330 3_1:+86919163 Msa0383880:five_prime_UTR
AATTAATGCATAACCAAAAG+AGG 0.512333 3_1:-86922942 None:intergenic
TACTAATAGTTGCGGAAAAG+AGG 0.512974 3_1:-86919561 None:intergenic
ACAGTACTCAAATGAGGAAG+TGG 0.516285 3_1:+86921250 Msa0383880:CDS
GATGAGAAAGGCAAATGTGT+TGG 0.517908 3_1:+86923420 Msa0383880:CDS
TTGATTAAAACTAGTTAGTG+GGG 0.518840 3_1:-86919630 None:intergenic
AATAATACTCATGGTATTGG+TGG 0.521333 3_1:-86919698 None:intergenic
TTGTCTTCTTCTGATAACCT+TGG 0.523957 3_1:-86923174 None:intergenic
TTAGTAATTGCTAAGTTCAC+CGG 0.525109 3_1:+86920349 Msa0383880:five_prime_UTR
TCCATGAGAAGCTTGGAGAA+AGG 0.528469 3_1:-86919227 None:intergenic
TTAAAACTAGTTAGTGGGGA+GGG 0.528583 3_1:-86919626 None:intergenic
TCCATTCAGTTACAACTGGA+TGG 0.531237 3_1:+86918947 Msa0383880:five_prime_UTR
TGGACTCTCTCTAGCAGTTG+TGG 0.531790 3_1:+86922970 Msa0383880:CDS
GATTGATGATACCTGTTCTC+CGG 0.535214 3_1:-86920368 None:intergenic
GAGAAATTACACTTATATGC+AGG 0.536730 3_1:+86922123 Msa0383880:CDS
TTCAGTATGGGAAACTCGCT+GGG 0.539810 3_1:+86922402 Msa0383880:CDS
AATAAAGCAATGGCTGGATG+TGG 0.541807 3_1:-86919530 None:intergenic
GCATGGGCAATTTCTCAACT+AGG 0.542467 3_1:+86921995 Msa0383880:CDS
TCTCAACTAGGATGGATAGC+TGG 0.542950 3_1:+86922007 Msa0383880:CDS
ACACATAATAACAGTGGTGG+TGG 0.543885 3_1:+86921952 Msa0383880:CDS
ACTTATTTAGACTAATTTGG+AGG 0.544065 3_1:+86923835 Msa0383880:CDS
AGGCTCTAATTCTTGAGAGT+GGG 0.544744 3_1:+86921179 Msa0383880:intron
TTTGTGGATTGATTCAGTAT+GGG 0.545041 3_1:+86922390 Msa0383880:CDS
AGTATTATTACTTGGACACT+AGG 0.550657 3_1:+86919712 Msa0383880:five_prime_UTR
TAGGCTCTAATTCTTGAGAG+TGG 0.551021 3_1:+86921178 Msa0383880:intron
ATGTTGTTTGATTGATTGCA+AGG 0.551837 3_1:+86919802 Msa0383880:five_prime_UTR
TAAAACTAGTTAGTGGGGAG+GGG 0.555988 3_1:-86919625 None:intergenic
CTTGCTGCAATGATGACAAT+GGG 0.558549 3_1:-86919772 None:intergenic
ACATGAGCTACATCAACTCT+AGG 0.559577 3_1:-86924157 None:intergenic
CCCCAAAGCAACCAACCAGA+AGG 0.561618 3_1:-86923551 None:intergenic
TGTCCAAGTAATAATACTCA+TGG 0.565263 3_1:-86919707 None:intergenic
GGGCAATTTCTCAACTAGGA+TGG 0.565746 3_1:+86921999 Msa0383880:CDS
GGAAAGCACACAGATGAGAA+AGG 0.569880 3_1:+86923408 Msa0383880:CDS
AATATATTTGTAGTTATACA+GGG 0.570950 3_1:-86920208 None:intergenic
TATCAAACAGTACTCAAATG+AGG 0.572155 3_1:+86921244 Msa0383880:CDS
AAACCAGTGAGGATGTTCCC+TGG 0.577786 3_1:-86923514 None:intergenic
TCATTGACTCATGCGATGCG+AGG 0.580019 3_1:-86919501 None:intergenic
TATACCTAGGTAAGCATGAA+CGG 0.581147 3_1:-86922146 None:intergenic
ATTGACTCTAATATACATTG+AGG 0.581889 3_1:+86919025 Msa0383880:five_prime_UTR
CACATTAAAGTCAAATCCAC+CGG 0.582623 3_1:+86923387 Msa0383880:CDS
CCCCAAAACTACGATAATGT+TGG 0.583096 3_1:+86919850 Msa0383880:five_prime_UTR
TTGAGCACAAACAATTACTC+AGG 0.586166 3_1:+86918880 Msa0383880:five_prime_UTR
TTTGAGACAATAAAATCTGA+AGG 0.587153 3_1:-86922871 None:intergenic
CATTGACTCATGCGATGCGA+GGG 0.587939 3_1:-86919500 None:intergenic
AGGAGTGTTGGCTCTAGCAT+GGG 0.591346 3_1:+86921979 Msa0383880:CDS
ATTAAAACTAGTTAGTGGGG+AGG 0.594129 3_1:-86919627 None:intergenic
CTGAATCTTTATCTAAATGG+AGG 0.602948 3_1:+86921205 Msa0383880:exon
TTTCGGTGTAAAGAATGAGT+GGG 0.605269 3_1:+86919263 Msa0383880:five_prime_UTR
CACATAATAACAGTGGTGGT+GGG 0.606869 3_1:+86921953 Msa0383880:CDS
ACTCCAGGGAACATCCTCAC+TGG 0.606948 3_1:+86923511 Msa0383880:CDS
AATGAGGAAGTGGATGATGA+CGG 0.608436 3_1:+86921260 Msa0383880:CDS
TATAACTTGCTCTACAAGCA+TGG 0.608733 3_1:+86922442 Msa0383880:CDS
CATAGCCAAGTGAACCACAT+AGG 0.609497 3_1:-86923471 None:intergenic
AAACTCGCTGGGATTACAGT+GGG 0.611394 3_1:+86922413 Msa0383880:CDS
TCTTGCTGCAATGATGACAA+TGG 0.614910 3_1:-86919773 None:intergenic
TATACATTGAGGCATAATTG+AGG 0.614986 3_1:+86919036 Msa0383880:five_prime_UTR
AGCCAAGTGAACCACATAGG+AGG 0.616311 3_1:-86923468 None:intergenic
CCCAAAGCAACCAACCAGAA+GGG 0.617292 3_1:-86923550 None:intergenic
ATCGGGAAGAAGACGATGAG+TGG 0.621718 3_1:-86923948 None:intergenic
TATATATATGTCAATGTCAG+TGG 0.621958 3_1:-86919668 None:intergenic
TAATACTCATGGTATTGGTG+GGG 0.623728 3_1:-86919696 None:intergenic
GTTACTCCTTTAAAAGCCGG+TGG 0.624487 3_1:-86920131 None:intergenic
TTGCAAGTGACGCTTTGATG+AGG 0.624811 3_1:-86920177 None:intergenic
ATTTCGGTGTAAAGAATGAG+TGG 0.625105 3_1:+86919262 Msa0383880:five_prime_UTR
CAGGCCGTTCATGCTTACCT+AGG 0.625589 3_1:+86922142 Msa0383880:CDS
GTTGAAGAATGGCATTGCCA+TGG 0.631337 3_1:-86923889 None:intergenic
AAATGGGTGCCAACATGATG+TGG 0.632507 3_1:+86923748 Msa0383880:CDS
TGAGAAAGGCAAATGTGTTG+GGG 0.635338 3_1:+86923422 Msa0383880:CDS
TTGGAACCAAAGTAGGACCA+AGG 0.639180 3_1:+86923157 Msa0383880:CDS
TGAACGCGGCCACATCATGT+TGG 0.643082 3_1:-86923757 None:intergenic
AATGGCCACAGTCATTGCCA+TGG 0.643159 3_1:+86923872 Msa0383880:CDS
AGTGGTGGTACTAATAGTTG+CGG 0.644274 3_1:-86919569 None:intergenic
TATTTGTAGTTATACAGGGG+AGG 0.647401 3_1:-86920204 None:intergenic
TGCATTATAGTCCATATGGT+AGG 0.648433 3_1:+86923580 Msa0383880:CDS
CATTTGGTGATCACACTCCA+GGG 0.652654 3_1:+86923497 Msa0383880:CDS
TGATCATGTTTAGAGGCAAG+TGG 0.662501 3_1:-86919587 None:intergenic
TTGTTATAGATATCCAGACT+CGG 0.668178 3_1:+86922090 Msa0383880:CDS
CATAAAATCCAAAACCAGTG+AGG 0.669591 3_1:-86923525 None:intergenic
AACACACATAATAACAGTGG+TGG 0.670192 3_1:+86921949 Msa0383880:CDS
TTCGGTGTAAAGAATGAGTG+GGG 0.684112 3_1:+86919264 Msa0383880:five_prime_UTR
CATTGCCATGGCAATGACTG+TGG 0.692928 3_1:-86923877 None:intergenic
GAAACTCGCTGGGATTACAG+TGG 0.694611 3_1:+86922412 Msa0383880:CDS
ATATATTTGTAGTTATACAG+GGG 0.695622 3_1:-86920207 None:intergenic
AACAACACACATAATAACAG+TGG 0.699193 3_1:+86921946 Msa0383880:CDS
TCATGTTTAGAGGCAAGTGG+TGG 0.706876 3_1:-86919584 None:intergenic
TCATTTATGAAAGATGAACG+CGG 0.761503 3_1:-86923771 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAAATAAATAAATAAACA+AGG - chr3_1:86919129-86919148 None:intergenic 10.0%
!!! TTTTACTTTTATCAATTAAA+AGG + chr3_1:86919964-86919983 Msa0383880:five_prime_UTR 10.0%
!!! TTTTTTATTTTCATTGTTTT+CGG - chr3_1:86920069-86920088 None:intergenic 10.0%
!!! TTTATACTATTAATTTTTGT+TGG + chr3_1:86921674-86921693 Msa0383880:intron 10.0%
!!! TTATACTATTAATTTTTGTT+GGG + chr3_1:86921675-86921694 Msa0383880:intron 10.0%
!!! TAATATAGTTCTATATAGTT+TGG - chr3_1:86918919-86918938 None:intergenic 15.0%
!!! TTTATTTATTTTGAAAATCC+AGG + chr3_1:86919135-86919154 Msa0383880:intron 15.0%
!!! TAACAATTTTATTTAGTTTG+TGG + chr3_1:86919436-86919455 Msa0383880:five_prime_UTR 15.0%
!!! AACAATTTTATTTAGTTTGT+GGG + chr3_1:86919437-86919456 Msa0383880:five_prime_UTR 15.0%
!! AATATATTTGTAGTTATACA+GGG - chr3_1:86920211-86920230 None:intergenic 15.0%
!! TAATATATTTGTAGTTATAC+AGG - chr3_1:86920212-86920231 None:intergenic 15.0%
!! TTTCAAAATATTATTGACAT+GGG - chr3_1:86920628-86920647 None:intergenic 15.0%
!! ATTTCAAAATATTATTGACA+TGG - chr3_1:86920629-86920648 None:intergenic 15.0%
!! TTACAATATTTATTTACCAT+TGG - chr3_1:86921062-86921081 None:intergenic 15.0%
!!! TTTTATTGCAAAAAAAGAAA+AGG - chr3_1:86921646-86921665 None:intergenic 15.0%
!!! TTTTCTTTTTTTGCAATAAA+AGG + chr3_1:86921645-86921664 Msa0383880:intron 15.0%
!! AGTATATTTGATGTATTTAA+TGG + chr3_1:86921871-86921890 Msa0383880:intron 15.0%
!! ATGTATTTAATGGAAATAAT+TGG + chr3_1:86921881-86921900 Msa0383880:intron 15.0%
!!! ATTTGTTGTTAATATTTTGT+TGG - chr3_1:86923028-86923047 None:intergenic 15.0%
!! TTTCATAATTATCCAATAAT+TGG - chr3_1:86923054-86923073 None:intergenic 15.0%
!!! TCTAATCTATGTTTTTATTT+AGG + chr3_1:86923363-86923382 Msa0383880:intron 15.0%
!! TGGAATCAATTTGAAAATTT+CGG + chr3_1:86919246-86919265 Msa0383880:five_prime_UTR 20.0%
!! TTTGATTAAAACTAGTTAGT+GGG - chr3_1:86919634-86919653 None:intergenic 20.0%
!! ATTTGATTAAAACTAGTTAG+TGG - chr3_1:86919635-86919654 None:intergenic 20.0%
!!! AAATAAATGATTTTTTCCAC+CGG + chr3_1:86920115-86920134 Msa0383880:five_prime_UTR 20.0%
!! ATATATTTGTAGTTATACAG+GGG - chr3_1:86920210-86920229 None:intergenic 20.0%
!!! ATATATTATGTCATGTCTTT+TGG + chr3_1:86920224-86920243 Msa0383880:five_prime_UTR 20.0%
!! TGTCATTCAGATTTATATAT+GGG - chr3_1:86920478-86920497 None:intergenic 20.0%
!! TTCAAAATATTATTGACATG+GGG - chr3_1:86920627-86920646 None:intergenic 20.0%
!!! TTTTTTTAAATCCTCCATTT+TGG - chr3_1:86920799-86920818 None:intergenic 20.0%
!!! TTTGTTTTCATAGAGTTTTT+TGG + chr3_1:86920926-86920945 Msa0383880:intron 20.0%
!! ATTTATTTACCATTGGATTA+AGG - chr3_1:86921055-86921074 None:intergenic 20.0%
!! AATCTGAATCTTTATCTAAA+TGG + chr3_1:86921202-86921221 Msa0383880:exon 20.0%
!! TCAAATAGTTATGAAAAAGA+TGG + chr3_1:86921416-86921435 Msa0383880:intron 20.0%
!! TAAAAGAAAACATCTTTCAA+AGG - chr3_1:86921458-86921477 None:intergenic 20.0%
!! ATGGTAGTATATAATAATGT+CGG - chr3_1:86921502-86921521 None:intergenic 20.0%
!! ATAGCATAAGTTAGTAAATA+TGG - chr3_1:86921749-86921768 None:intergenic 20.0%
!! ATTGTAAGTGTAAATAGAAA+TGG - chr3_1:86922059-86922078 None:intergenic 20.0%
!! TGTATTTATGATATATACCT+AGG - chr3_1:86922162-86922181 None:intergenic 20.0%
!!! TTCTATTAATCAATTTGTTG+AGG - chr3_1:86922568-86922587 None:intergenic 20.0%
!! ATGTTAACTTATGGAAATTT+GGG - chr3_1:86922898-86922917 None:intergenic 20.0%
!! AATGTTAACTTATGGAAATT+TGG - chr3_1:86922899-86922918 None:intergenic 20.0%
!! TTGATATCAATGTTAACTTA+TGG - chr3_1:86922907-86922926 None:intergenic 20.0%
!!! ACAACAAATTTTCCAATTAT+TGG + chr3_1:86923039-86923058 Msa0383880:intron 20.0%
!! TTCCAATTATGTATTTACTA+AGG + chr3_1:86923091-86923110 Msa0383880:intron 20.0%
!! ATTTCAACTATACGAAATAT+TGG - chr3_1:86923732-86923751 None:intergenic 20.0%
!! AATATTTCGTATAGTTGAAA+TGG + chr3_1:86923731-86923750 Msa0383880:CDS 20.0%
!! ATATTTCGTATAGTTGAAAT+GGG + chr3_1:86923732-86923751 Msa0383880:CDS 20.0%
!! TCAACTTATTTAGACTAATT+TGG + chr3_1:86923832-86923851 Msa0383880:CDS 20.0%
!!! TTGGAACTTTTAAAATAACT+TGG - chr3_1:86924270-86924289 None:intergenic 20.0%
! AATAACAGCCATAACTATAA+TGG - chr3_1:86919008-86919027 None:intergenic 25.0%
!! ATTGACTCTAATATACATTG+AGG + chr3_1:86919025-86919044 Msa0383880:five_prime_UTR 25.0%
!!! AATTTTATTTAGTTTGTGGG+TGG + chr3_1:86919440-86919459 Msa0383880:five_prime_UTR 25.0%
! AAAAAAAATAAAGCAATGGC+TGG - chr3_1:86919539-86919558 None:intergenic 25.0%
! GGAGAAAAAAAATAAAGCAA+TGG - chr3_1:86919543-86919562 None:intergenic 25.0%
! TAAACAATGATCATGTTTAG+AGG - chr3_1:86919597-86919616 None:intergenic 25.0%
! TTGATTAAAACTAGTTAGTG+GGG - chr3_1:86919633-86919652 None:intergenic 25.0%
! TATATATATGTCAATGTCAG+TGG - chr3_1:86919671-86919690 None:intergenic 25.0%
! AGTAATAATACTCATGGTAT+TGG - chr3_1:86919704-86919723 None:intergenic 25.0%
! ATACCATGAGTATTATTACT+TGG + chr3_1:86919704-86919723 Msa0383880:five_prime_UTR 25.0%
! TTCATTTAGCGCAAAATATA+TGG - chr3_1:86919742-86919761 None:intergenic 25.0%
!! AAACATTTTCACCAAGTAAA+TGG - chr3_1:86919917-86919936 None:intergenic 25.0%
! ATACAAGATAAATAGTCTCT+TGG - chr3_1:86920044-86920063 None:intergenic 25.0%
! AGATTTATATATGGGATCAA+AGG - chr3_1:86920470-86920489 None:intergenic 25.0%
!! GTGTCATTCAGATTTATATA+TGG - chr3_1:86920479-86920498 None:intergenic 25.0%
! TTTCTTAATTTCTTATCGAC+TGG - chr3_1:86920839-86920858 None:intergenic 25.0%
! AATTAAGAAAAAACTCCATG+AGG + chr3_1:86920849-86920868 Msa0383880:intron 25.0%
!!! TATTTGTATGTTTGGTTTTC+TGG + chr3_1:86920970-86920989 Msa0383880:intron 25.0%
!! AAGAACATATGATTCTGAAA+TGG - chr3_1:86921362-86921381 None:intergenic 25.0%
! AAGTTGACAATTTCAATAGA+TGG - chr3_1:86921521-86921540 None:intergenic 25.0%
! CATGAAAGAAAGAAAATAAG+AGG - chr3_1:86921609-86921628 None:intergenic 25.0%
! ATTTGGAAAATCTAATCTTC+TGG + chr3_1:86921722-86921741 Msa0383880:intron 25.0%
! CAAATATACTAGTATCTAAC+TGG - chr3_1:86921861-86921880 None:intergenic 25.0%
! TGGAAATAATTGGATTTGAA+TGG + chr3_1:86921891-86921910 Msa0383880:intron 25.0%
!!! TTTAGCATTGACAAAAATAG+TGG - chr3_1:86922303-86922322 None:intergenic 25.0%
!!! TTGATTAACCAGAGTATTTT+TGG + chr3_1:86922479-86922498 Msa0383880:intron 25.0%
!! TTTGAGACAATAAAATCTGA+AGG - chr3_1:86922874-86922893 None:intergenic 25.0%
! AATTAATGCATAACCAAAAG+AGG - chr3_1:86922945-86922964 None:intergenic 25.0%
!!! TCTTTTGGTTATGCATTAAT+TGG + chr3_1:86922944-86922963 Msa0383880:CDS 25.0%
! TGCCTTAGTAAATACATAAT+TGG - chr3_1:86923096-86923115 None:intergenic 25.0%
!!! TGTATTTACTAAGGCATTTT+TGG + chr3_1:86923100-86923119 Msa0383880:intron 25.0%
! TATCAGAAGAAGACAAAATT+TGG + chr3_1:86923181-86923200 Msa0383880:CDS 25.0%
! TACTGTTGTCTATGATATAA+TGG + chr3_1:86923251-86923270 Msa0383880:CDS 25.0%
! GAAGTATAAAAAAGTAGACT+TGG + chr3_1:86923299-86923318 Msa0383880:intron 25.0%
! TAGAGATAACTGATATCAAT+GGG - chr3_1:86923347-86923366 None:intergenic 25.0%
! TTAGAGATAACTGATATCAA+TGG - chr3_1:86923348-86923367 None:intergenic 25.0%
! ACTTATTTAGACTAATTTGG+AGG + chr3_1:86923835-86923854 Msa0383880:CDS 25.0%
!! TAAACAGATTTTCATTGAAG+TGG + chr3_1:86923997-86924016 Msa0383880:CDS 25.0%
! ATTCTTACTAATTCCATGAA+TGG - chr3_1:86924084-86924103 None:intergenic 25.0%
! AACAATAGCCTATTTCAAAA+TGG + chr3_1:86924132-86924151 Msa0383880:exon 25.0%
!!! GAACTTTTAAAATAACTTGG+TGG - chr3_1:86924267-86924286 None:intergenic 25.0%
ACAGTTAGCCATTATAGTTA+TGG + chr3_1:86918997-86919016 Msa0383880:five_prime_UTR 30.0%
TATACATTGAGGCATAATTG+AGG + chr3_1:86919036-86919055 Msa0383880:five_prime_UTR 30.0%
AGAATCAATTGCATAAATCC+TGG - chr3_1:86919156-86919175 None:intergenic 30.0%
TAACAAAAAAACGAGTGACT+TGG + chr3_1:86919315-86919334 Msa0383880:five_prime_UTR 30.0%
AACAAAAAAACGAGTGACTT+GGG + chr3_1:86919316-86919335 Msa0383880:five_prime_UTR 30.0%
GTTTCTTAATTGGACATATC+CGG + chr3_1:86919376-86919395 Msa0383880:five_prime_UTR 30.0%
CTTTCATTCCAATCAATCAA+AGG + chr3_1:86919466-86919485 Msa0383880:five_prime_UTR 30.0%
! TATTTTCGCCTTTGATTGAT+TGG - chr3_1:86919477-86919496 None:intergenic 30.0%
!! ATAATACTCATGGTATTGGT+GGG - chr3_1:86919700-86919719 None:intergenic 30.0%
! AATAATACTCATGGTATTGG+TGG - chr3_1:86919701-86919720 None:intergenic 30.0%
TGTCCAAGTAATAATACTCA+TGG - chr3_1:86919710-86919729 None:intergenic 30.0%
AGTATTATTACTTGGACACT+AGG + chr3_1:86919712-86919731 Msa0383880:five_prime_UTR 30.0%
! ATGTTGTTTGATTGATTGCA+AGG + chr3_1:86919802-86919821 Msa0383880:five_prime_UTR 30.0%
CAAATAAGGATCCATTTACT+TGG + chr3_1:86919903-86919922 Msa0383880:five_prime_UTR 30.0%
!! GAGGTTATATATAGCCTTAT+AGG - chr3_1:86920161-86920180 None:intergenic 30.0%
TTAGTAATTGCTAAGTTCAC+CGG + chr3_1:86920349-86920368 Msa0383880:five_prime_UTR 30.0%
TTCGGAAAAAAGGAAAAAGA+AGG - chr3_1:86920396-86920415 None:intergenic 30.0%
TTATATATGGGATCAAAGGT+CGG - chr3_1:86920466-86920485 None:intergenic 30.0%
! TGCCAATACTGTTTTCTTTA+CGG + chr3_1:86920557-86920576 Msa0383880:intron 30.0%
AGACACGATATTTGTATGTT+TGG + chr3_1:86920962-86920981 Msa0383880:intron 30.0%
AGTGTCCCATTAAATATGAT+GGG + chr3_1:86921026-86921045 Msa0383880:intron 30.0%
TATTTACCATTGGATTAAGG+AGG - chr3_1:86921052-86921071 None:intergenic 30.0%
TTAACTCTCTAATAAGCACA+AGG - chr3_1:86921106-86921125 None:intergenic 30.0%
!!! CAGTTTTGTTTTTGATGCTT+AGG + chr3_1:86921159-86921178 Msa0383880:intron 30.0%
CTGAATCTTTATCTAAATGG+AGG + chr3_1:86921205-86921224 Msa0383880:exon 30.0%
TATCAAACAGTACTCAAATG+AGG + chr3_1:86921244-86921263 Msa0383880:CDS 30.0%
GTTGAAGGAGTAATAGAATT+TGG + chr3_1:86921705-86921724 Msa0383880:intron 30.0%
AACAACACACATAATAACAG+TGG + chr3_1:86921946-86921965 Msa0383880:CDS 30.0%
TTGTTATAGATATCCAGACT+CGG + chr3_1:86922090-86922109 Msa0383880:CDS 30.0%
GAGAAATTACACTTATATGC+AGG + chr3_1:86922123-86922142 Msa0383880:CDS 30.0%
!! AGTACAATTTTAGCGTGAAT+CGG - chr3_1:86922253-86922272 None:intergenic 30.0%
!! TTTTGTGGATTGATTCAGTA+TGG + chr3_1:86922389-86922408 Msa0383880:CDS 30.0%
! TTTGTGGATTGATTCAGTAT+GGG + chr3_1:86922390-86922409 Msa0383880:CDS 30.0%
!!! TTTTAGGACCAAAAATACTC+TGG - chr3_1:86922490-86922509 None:intergenic 30.0%
TTGCAATTTCAATGCATTCA+AGG - chr3_1:86922541-86922560 None:intergenic 30.0%
!! TTGATTTGCTTCCACAAAAA+TGG + chr3_1:86922794-86922813 Msa0383880:CDS 30.0%
AAAACTTGCAATAAGCTTCA+TGG - chr3_1:86922820-86922839 None:intergenic 30.0%
TCAAATAATCCTTACATGCT+CGG + chr3_1:86922839-86922858 Msa0383880:CDS 30.0%
TGTATGCATTATAGTCCATA+TGG + chr3_1:86923576-86923595 Msa0383880:CDS 30.0%
GTATGTTGATATAATGTTGC+AGG + chr3_1:86923695-86923714 Msa0383880:intron 30.0%
TCATTTATGAAAGATGAACG+CGG - chr3_1:86923774-86923793 None:intergenic 30.0%
!! TCAAAGAGCCAATTTTGTTT+GGG - chr3_1:86923803-86923822 None:intergenic 30.0%
GAGGACAATATTTGTGATAA+TGG + chr3_1:86923854-86923873 Msa0383880:CDS 30.0%
AACAAACAAGACTCAATAGT+TGG - chr3_1:86924031-86924050 None:intergenic 30.0%
TGAGTAATTGTTTGTGCTCA+AGG - chr3_1:86918881-86918900 None:intergenic 35.0%
TTGAGCACAAACAATTACTC+AGG + chr3_1:86918880-86918899 Msa0383880:five_prime_UTR 35.0%
! CTTTTCCATTCAGTTACAAC+TGG + chr3_1:86918943-86918962 Msa0383880:five_prime_UTR 35.0%
ACAACTGGATGGTTAAACTA+TGG + chr3_1:86918958-86918977 Msa0383880:five_prime_UTR 35.0%
TGGTTAAACTATGGCTGTTA+TGG + chr3_1:86918967-86918986 Msa0383880:five_prime_UTR 35.0%
! AATTGATTCCATGAGAAGCT+TGG - chr3_1:86919237-86919256 None:intergenic 35.0%
! ATTTCGGTGTAAAGAATGAG+TGG + chr3_1:86919262-86919281 Msa0383880:five_prime_UTR 35.0%
! TTTCGGTGTAAAGAATGAGT+GGG + chr3_1:86919263-86919282 Msa0383880:five_prime_UTR 35.0%
ACAAAAAAACGAGTGACTTG+GGG + chr3_1:86919317-86919336 Msa0383880:five_prime_UTR 35.0%
! ACGCGTTTTCGTTTCTTAAT+TGG + chr3_1:86919366-86919385 Msa0383880:five_prime_UTR 35.0%
! AAGATTCTGGATACACGTTT+TGG + chr3_1:86919399-86919418 Msa0383880:five_prime_UTR 35.0%
TACTAATAGTTGCGGAAAAG+AGG - chr3_1:86919564-86919583 None:intergenic 35.0%
TTAAAACTAGTTAGTGGGGA+GGG - chr3_1:86919629-86919648 None:intergenic 35.0%
ATTAAAACTAGTTAGTGGGG+AGG - chr3_1:86919630-86919649 None:intergenic 35.0%
TATGTCAATGTCAGTGGTAT+TGG - chr3_1:86919665-86919684 None:intergenic 35.0%
!! TAATACTCATGGTATTGGTG+GGG - chr3_1:86919699-86919718 None:intergenic 35.0%
!! CCAACATTATCGTAGTTTTG+GGG - chr3_1:86919853-86919872 None:intergenic 35.0%
! GCCAACATTATCGTAGTTTT+GGG - chr3_1:86919854-86919873 None:intergenic 35.0%
! TGCCAACATTATCGTAGTTT+TGG - chr3_1:86919855-86919874 None:intergenic 35.0%
!!! TTTTTTCCACCGGCTTTTAA+AGG + chr3_1:86920125-86920144 Msa0383880:five_prime_UTR 35.0%
! TACGTTACTCCTTTAAAAGC+CGG - chr3_1:86920137-86920156 None:intergenic 35.0%
AAGGAGTAACGTAACCTATA+AGG + chr3_1:86920144-86920163 Msa0383880:five_prime_UTR 35.0%
TATTTGTAGTTATACAGGGG+AGG - chr3_1:86920207-86920226 None:intergenic 35.0%
AATGACACGTAACACTGTTT+CGG + chr3_1:86920491-86920510 Msa0383880:intron 35.0%
!! GTAAAGAAAACAGTATTGGC+AGG - chr3_1:86920558-86920577 None:intergenic 35.0%
GACCGTAAAGAAAACAGTAT+TGG - chr3_1:86920562-86920581 None:intergenic 35.0%
!! CATTTAATTTGCACCACATG+TGG + chr3_1:86920748-86920767 Msa0383880:intron 35.0%
!! AGAATTTGTTAGACCACATG+TGG - chr3_1:86920764-86920783 None:intergenic 35.0%
!!! ATCCTCCATTTTGGTTTGTT+AGG - chr3_1:86920790-86920809 None:intergenic 35.0%
GTTGATTACGCAATCTGATA+AGG + chr3_1:86921003-86921022 Msa0383880:intron 35.0%
GAGTGTCCCATTAAATATGA+TGG + chr3_1:86921025-86921044 Msa0383880:intron 35.0%
TATCTAAATGGAGGCTGAAA+AGG + chr3_1:86921214-86921233 Msa0383880:exon 35.0%
ATCTAAATGGAGGCTGAAAA+GGG + chr3_1:86921215-86921234 Msa0383880:exon 35.0%
AGAGATGCTGAAGTTATAAC+TGG - chr3_1:86921326-86921345 None:intergenic 35.0%
CTTTCTTTCATGACGTCAAA+CGG + chr3_1:86921617-86921636 Msa0383880:intron 35.0%
! TTGTTGGGATTGTAAGTTGA+AGG + chr3_1:86921690-86921709 Msa0383880:intron 35.0%
AACACACATAATAACAGTGG+TGG + chr3_1:86921949-86921968 Msa0383880:CDS 35.0%
TATACCTAGGTAAGCATGAA+CGG - chr3_1:86922149-86922168 None:intergenic 35.0%
!! GTACAATTTTAGCGTGAATC+GGG - chr3_1:86922252-86922271 None:intergenic 35.0%
! TAGTTGCCCATTTTGTCATT+AGG + chr3_1:86922350-86922369 Msa0383880:intron 35.0%
GTTCCACCTAATGACAAAAT+GGG - chr3_1:86922359-86922378 None:intergenic 35.0%
TGTTCCACCTAATGACAAAA+TGG - chr3_1:86922360-86922379 None:intergenic 35.0%
! GGAACAATGCACATATTTTG+TGG + chr3_1:86922374-86922393 Msa0383880:CDS 35.0%
!! TATAACTTGCTCTACAAGCA+TGG + chr3_1:86922442-86922461 Msa0383880:CDS 35.0%
! CAACCTCACTCACATATTTT+AGG - chr3_1:86922506-86922525 None:intergenic 35.0%
TGCCACATGTATAAATTAGG+GGG - chr3_1:86922760-86922779 None:intergenic 35.0%
CTGCCACATGTATAAATTAG+GGG - chr3_1:86922761-86922780 None:intergenic 35.0%
CCTGCCACATGTATAAATTA+GGG - chr3_1:86922762-86922781 None:intergenic 35.0%
CCTAATTTATACATGTGGCA+GGG + chr3_1:86922760-86922779 Msa0383880:intron 35.0%
GGTTATGCATTAATTGGAAG+TGG + chr3_1:86922950-86922969 Msa0383880:CDS 35.0%
! TACTTTGGTTCCAAACAAAC+TGG - chr3_1:86923151-86923170 None:intergenic 35.0%
! AGTTTGTTTGGAACCAAAGT+AGG + chr3_1:86923150-86923169 Msa0383880:CDS 35.0%
TTGTCTTCTTCTGATAACCT+TGG - chr3_1:86923177-86923196 None:intergenic 35.0%
!!! TTGGAAAGTTTTGACTGCTT+TGG + chr3_1:86923200-86923219 Msa0383880:CDS 35.0%
!!! TGGAAAGTTTTGACTGCTTT+GGG + chr3_1:86923201-86923220 Msa0383880:CDS 35.0%
CACATTAAAGTCAAATCCAC+CGG + chr3_1:86923387-86923406 Msa0383880:CDS 35.0%
ATGAGAAAGGCAAATGTGTT+GGG + chr3_1:86923421-86923440 Msa0383880:CDS 35.0%
! ACAATACTTTTCCTCCTATG+TGG + chr3_1:86923457-86923476 Msa0383880:CDS 35.0%
CATAAAATCCAAAACCAGTG+AGG - chr3_1:86923528-86923547 None:intergenic 35.0%
TGCATTATAGTCCATATGGT+AGG + chr3_1:86923580-86923599 Msa0383880:CDS 35.0%
GAAGAACACCCAAACAAAAT+TGG + chr3_1:86923792-86923811 Msa0383880:CDS 35.0%
! GTCAAAGAGCCAATTTTGTT+TGG - chr3_1:86923804-86923823 None:intergenic 35.0%
TGAGAGATGTGCATTTGTAT+CGG - chr3_1:86923969-86923988 None:intergenic 35.0%
!!! TCTAGGCTCCATTTTGAAAT+AGG - chr3_1:86924143-86924162 None:intergenic 35.0%
TCCATTCAGTTACAACTGGA+TGG + chr3_1:86918947-86918966 Msa0383880:five_prime_UTR 40.0%
ACCATCCAGTTGTAACTGAA+TGG - chr3_1:86918951-86918970 None:intergenic 40.0%
! TTCGGTGTAAAGAATGAGTG+GGG + chr3_1:86919264-86919283 Msa0383880:five_prime_UTR 40.0%
AACGAAAACGCGTTTACTTG+AGG - chr3_1:86919359-86919378 None:intergenic 40.0%
AACGTGTATCCAGAATCTTC+CGG - chr3_1:86919398-86919417 None:intergenic 40.0%
!! ATACACGTTTTGGATCGTGT+CGG + chr3_1:86919409-86919428 Msa0383880:five_prime_UTR 40.0%
AATAAAGCAATGGCTGGATG+TGG - chr3_1:86919533-86919552 None:intergenic 40.0%
AGTGGTGGTACTAATAGTTG+CGG - chr3_1:86919572-86919591 None:intergenic 40.0%
TGATCATGTTTAGAGGCAAG+TGG - chr3_1:86919590-86919609 None:intergenic 40.0%
TAAAACTAGTTAGTGGGGAG+GGG - chr3_1:86919628-86919647 None:intergenic 40.0%
CTTGCTGCAATGATGACAAT+GGG - chr3_1:86919775-86919794 None:intergenic 40.0%
TCTTGCTGCAATGATGACAA+TGG - chr3_1:86919776-86919795 None:intergenic 40.0%
CCCCAAAACTACGATAATGT+TGG + chr3_1:86919850-86919869 Msa0383880:five_prime_UTR 40.0%
AAACTCAAAGCCTGCTGATA+CGG + chr3_1:86919880-86919899 Msa0383880:five_prime_UTR 40.0%
! GATTGATGATACCTGTTCTC+CGG - chr3_1:86920371-86920390 None:intergenic 40.0%
GAACTTCGGATTCGGAAAAA+AGG - chr3_1:86920406-86920425 None:intergenic 40.0%
TGGTATTCGAACTTCGGATT+CGG - chr3_1:86920414-86920433 None:intergenic 40.0%
GCATGATTGGAATTTGGACA+GGG - chr3_1:86920536-86920555 None:intergenic 40.0%
! CTGTTTTCTTTACGGTCTTG+TGG + chr3_1:86920565-86920584 Msa0383880:intron 40.0%
!! TTTTCTTTACGGTCTTGTGG+TGG + chr3_1:86920568-86920587 Msa0383880:intron 40.0%
CTGCACCTAACAAACCAAAA+TGG + chr3_1:86920782-86920801 Msa0383880:intron 40.0%
CACCTAACAAACCAAAATGG+AGG + chr3_1:86920785-86920804 Msa0383880:intron 40.0%
GGAGGCCCATCATATTTAAT+GGG - chr3_1:86921034-86921053 None:intergenic 40.0%
AGGAGGCCCATCATATTTAA+TGG - chr3_1:86921035-86921054 None:intergenic 40.0%
! TAGGCTCTAATTCTTGAGAG+TGG + chr3_1:86921178-86921197 Msa0383880:intron 40.0%
! AGGCTCTAATTCTTGAGAGT+GGG + chr3_1:86921179-86921198 Msa0383880:intron 40.0%
ACAGTACTCAAATGAGGAAG+TGG + chr3_1:86921250-86921269 Msa0383880:CDS 40.0%
AATGAGGAAGTGGATGATGA+CGG + chr3_1:86921260-86921279 Msa0383880:CDS 40.0%
GATAGAGAAAGCAAGCTTAC+CGG - chr3_1:86921300-86921319 None:intergenic 40.0%
TGGATTTGAATGGATGCTTG+TGG + chr3_1:86921901-86921920 Msa0383880:intron 40.0%
ACACATAATAACAGTGGTGG+TGG + chr3_1:86921952-86921971 Msa0383880:CDS 40.0%
CACATAATAACAGTGGTGGT+GGG + chr3_1:86921953-86921972 Msa0383880:CDS 40.0%
! AGATATCCAGACTCGGTTAA+TGG + chr3_1:86922097-86922116 Msa0383880:CDS 40.0%
GTGCAATTAATCCCTCAAGT+CGG - chr3_1:86922218-86922237 None:intergenic 40.0%
GACTTGAGGGATTAATTGCA+CGG + chr3_1:86922217-86922236 Msa0383880:intron 40.0%
! TTGCCCATTTTGTCATTAGG+TGG + chr3_1:86922353-86922372 Msa0383880:intron 40.0%
GGTCCTAAAATATGTGAGTG+AGG + chr3_1:86922500-86922519 Msa0383880:intron 40.0%
TGAGTGAGGTTGTATTACTG+TGG + chr3_1:86922514-86922533 Msa0383880:intron 40.0%
ATGTATAAATTAGGGGGGGT+GGG - chr3_1:86922754-86922773 None:intergenic 40.0%
CCACATGTATAAATTAGGGG+GGG - chr3_1:86922758-86922777 None:intergenic 40.0%
GCCACATGTATAAATTAGGG+GGG - chr3_1:86922759-86922778 None:intergenic 40.0%
CCCTAATTTATACATGTGGC+AGG + chr3_1:86922759-86922778 Msa0383880:intron 40.0%
CCCTGCCACATGTATAAATT+AGG - chr3_1:86922763-86922782 None:intergenic 40.0%
!!! AAGCTTCATGGCCATTTTTG+TGG - chr3_1:86922808-86922827 None:intergenic 40.0%
! AATCCTTACATGCTCGGTTT+TGG + chr3_1:86922845-86922864 Msa0383880:CDS 40.0%
! ATCCTTACATGCTCGGTTTT+GGG + chr3_1:86922846-86922865 Msa0383880:CDS 40.0%
! GTTGCTGCAATTACCTCTTT+TGG + chr3_1:86922929-86922948 Msa0383880:CDS 40.0%
TGGAAAGACACAAGTGATGA+AGG - chr3_1:86923008-86923027 None:intergenic 40.0%
!!! AGGCATTTTTGGCTGTGAAT+AGG + chr3_1:86923111-86923130 Msa0383880:intron 40.0%
!!! GGCATTTTTGGCTGTGAATA+GGG + chr3_1:86923112-86923131 Msa0383880:intron 40.0%
!! TTTTGGCTGTGAATAGGGAA+AGG + chr3_1:86923117-86923136 Msa0383880:intron 40.0%
! GGAGAAAGAACCAGTTTGTT+TGG + chr3_1:86923138-86923157 Msa0383880:CDS 40.0%
TGATAACCTTGGTCCTACTT+TGG - chr3_1:86923166-86923185 None:intergenic 40.0%
ACTGATATCAATGGGACTAG+TGG - chr3_1:86923339-86923358 None:intergenic 40.0%
TTTCTCATCTGTGTGCTTTC+CGG - chr3_1:86923409-86923428 None:intergenic 40.0%
GATGAGAAAGGCAAATGTGT+TGG + chr3_1:86923420-86923439 Msa0383880:CDS 40.0%
TGAGAAAGGCAAATGTGTTG+GGG + chr3_1:86923422-86923441 Msa0383880:CDS 40.0%
! TTGGATTTTATGAGCCCTTC+TGG + chr3_1:86923536-86923555 Msa0383880:CDS 40.0%
! ATTTTATGAGCCCTTCTGGT+TGG + chr3_1:86923540-86923559 Msa0383880:CDS 40.0%
GCAAGAAACTCGTTGAAGAA+TGG - chr3_1:86923903-86923922 None:intergenic 40.0%
AACGAGTTTCTTGCATTGCT+TGG + chr3_1:86923909-86923928 Msa0383880:CDS 40.0%
!! TGCTTGGAGCATTTGGATTT+TGG + chr3_1:86923925-86923944 Msa0383880:CDS 40.0%
GAGAGATGTGCATTTGTATC+GGG - chr3_1:86923968-86923987 None:intergenic 40.0%
ACATGAGCTACATCAACTCT+AGG - chr3_1:86924160-86924179 None:intergenic 40.0%
! TGCAATTGATTCTCGCTGCA+TGG + chr3_1:86919163-86919182 Msa0383880:five_prime_UTR 45.0%
TCCTTTCTCCAAGCTTCTCA+TGG + chr3_1:86919226-86919245 Msa0383880:five_prime_UTR 45.0%
TCCATGAGAAGCTTGGAGAA+AGG - chr3_1:86919230-86919249 None:intergenic 45.0%
! GGGCAAGCTCTTCTTTTACA+GGG + chr3_1:86919284-86919303 Msa0383880:five_prime_UTR 45.0%
TGGACATATCCGGAAGATTC+TGG + chr3_1:86919386-86919405 Msa0383880:five_prime_UTR 45.0%
TCATGTTTAGAGGCAAGTGG+TGG - chr3_1:86919587-86919606 None:intergenic 45.0%
! TCCTTATTTGCCGTATCAGC+AGG - chr3_1:86919893-86919912 None:intergenic 45.0%
! GTTACTCCTTTAAAAGCCGG+TGG - chr3_1:86920134-86920153 None:intergenic 45.0%
TTGCAAGTGACGCTTTGATG+AGG - chr3_1:86920180-86920199 None:intergenic 45.0%
! CAGGACTGGTATTCGAACTT+CGG - chr3_1:86920420-86920439 None:intergenic 45.0%
GGCATGATTGGAATTTGGAC+AGG - chr3_1:86920537-86920556 None:intergenic 45.0%
TGGCAGGCATGATTGGAATT+TGG - chr3_1:86920542-86920561 None:intergenic 45.0%
!! ACAGTATTGGCAGGCATGAT+TGG - chr3_1:86920549-86920568 None:intergenic 45.0%
ACCACATTCACAGAGAAGGA+GGG + chr3_1:86920872-86920891 Msa0383880:intron 45.0%
GACGGAAGAATCAAGAGAAC+CGG + chr3_1:86921278-86921297 Msa0383880:CDS 45.0%
AATGGATGCTTGTGGTTGCA+GGG + chr3_1:86921909-86921928 Msa0383880:intron 45.0%
GCATGGGCAATTTCTCAACT+AGG + chr3_1:86921995-86922014 Msa0383880:CDS 45.0%
GGGCAATTTCTCAACTAGGA+TGG + chr3_1:86921999-86922018 Msa0383880:CDS 45.0%
TCTCAACTAGGATGGATAGC+TGG + chr3_1:86922007-86922026 Msa0383880:CDS 45.0%
! TCCCACATTTATCCGACTTG+AGG + chr3_1:86922203-86922222 Msa0383880:intron 45.0%
CCCTCAAGTCGGATAAATGT+GGG - chr3_1:86922207-86922226 None:intergenic 45.0%
! CCCACATTTATCCGACTTGA+GGG + chr3_1:86922204-86922223 Msa0383880:intron 45.0%
TCCCTCAAGTCGGATAAATG+TGG - chr3_1:86922208-86922227 None:intergenic 45.0%
ATTCAGTATGGGAAACTCGC+TGG + chr3_1:86922401-86922420 Msa0383880:CDS 45.0%
TTCAGTATGGGAAACTCGCT+GGG + chr3_1:86922402-86922421 Msa0383880:CDS 45.0%
AAACTCGCTGGGATTACAGT+GGG + chr3_1:86922413-86922432 Msa0383880:CDS 45.0%
TGTATAAATTAGGGGGGGTG+GGG - chr3_1:86922753-86922772 None:intergenic 45.0%
CATGTATAAATTAGGGGGGG+TGG - chr3_1:86922755-86922774 None:intergenic 45.0%
CCCCCCCTAATTTATACATG+TGG + chr3_1:86922755-86922774 Msa0383880:intron 45.0%
ATCCCAAAACCGAGCATGTA+AGG - chr3_1:86922851-86922870 None:intergenic 45.0%
TTGGAACCAAAGTAGGACCA+AGG + chr3_1:86923157-86923176 Msa0383880:CDS 45.0%
! GGAAAGCACACAGATGAGAA+AGG + chr3_1:86923408-86923427 Msa0383880:CDS 45.0%
TTCCTCCTATGTGGTTCACT+TGG + chr3_1:86923466-86923485 Msa0383880:CDS 45.0%
CATAGCCAAGTGAACCACAT+AGG - chr3_1:86923474-86923493 None:intergenic 45.0%
TCACTTGGCTATGCTGCATT+TGG + chr3_1:86923481-86923500 Msa0383880:CDS 45.0%
! CATTTGGTGATCACACTCCA+GGG + chr3_1:86923497-86923516 Msa0383880:CDS 45.0%
CCTGATATGCTCCTACCATA+TGG - chr3_1:86923594-86923613 None:intergenic 45.0%
! CCATATGGTAGGAGCATATC+AGG + chr3_1:86923591-86923610 Msa0383880:CDS 45.0%
AAATGGGTGCCAACATGATG+TGG + chr3_1:86923748-86923767 Msa0383880:CDS 45.0%
GTTGAAGAATGGCATTGCCA+TGG - chr3_1:86923892-86923911 None:intergenic 45.0%
! CTTGCATTGCTTGGAGCATT+TGG + chr3_1:86923918-86923937 Msa0383880:CDS 45.0%
!!! TCTTTTAAAATAATTTATTT+TGG + chr3_1:86921471-86921490 Msa0383880:intron 5.0%
! GGGGCAAGCTCTTCTTTTAC+AGG + chr3_1:86919283-86919302 Msa0383880:five_prime_UTR 50.0%
!! CATTGACTCATGCGATGCGA+GGG - chr3_1:86919503-86919522 None:intergenic 50.0%
!! TCATTGACTCATGCGATGCG+AGG - chr3_1:86919504-86919523 None:intergenic 50.0%
GCCTGCTGATACGGCAAATA+AGG + chr3_1:86919889-86919908 Msa0383880:five_prime_UTR 50.0%
TGCTAAGTTCACCGGAGAAC+AGG + chr3_1:86920357-86920376 Msa0383880:five_prime_UTR 50.0%
TAGGGACATTAGGACAGGAC+TGG - chr3_1:86920434-86920453 None:intergenic 50.0%
GTCAGTAGGGACATTAGGAC+AGG - chr3_1:86920439-86920458 None:intergenic 50.0%
GTCGAGTCAGTAGGGACATT+AGG - chr3_1:86920444-86920463 None:intergenic 50.0%
AAAGGTCGGTCGAGTCAGTA+GGG - chr3_1:86920452-86920471 None:intergenic 50.0%
AACAATCACCCTCACCTCAC+TGG + chr3_1:86920601-86920620 Msa0383880:intron 50.0%
TTATTGACATGGGGCCAGTG+AGG - chr3_1:86920618-86920637 None:intergenic 50.0%
CTCTGTGAATGTGGTCCTCA+TGG - chr3_1:86920867-86920886 None:intergenic 50.0%
GAGGACCACATTCACAGAGA+AGG + chr3_1:86920868-86920887 Msa0383880:intron 50.0%
GACCACATTCACAGAGAAGG+AGG + chr3_1:86920871-86920890 Msa0383880:intron 50.0%
CCACATTCACAGAGAAGGAG+GGG + chr3_1:86920873-86920892 Msa0383880:intron 50.0%
CACATTCACAGAGAAGGAGG+GGG + chr3_1:86920874-86920893 Msa0383880:intron 50.0%
GACGTACGATATTGCTGCAG+CGG + chr3_1:86920898-86920917 Msa0383880:intron 50.0%
GATGGGCCTCCTTAATCCAA+TGG + chr3_1:86921043-86921062 Msa0383880:intron 50.0%
GAATGGATGCTTGTGGTTGC+AGG + chr3_1:86921908-86921927 Msa0383880:intron 50.0%
!! AGGAGTGTTGGCTCTAGCAT+GGG + chr3_1:86921979-86921998 Msa0383880:CDS 50.0%
CTCTTGCCATTAACCGAGTC+TGG - chr3_1:86922106-86922125 None:intergenic 50.0%
GAAACTCGCTGGGATTACAG+TGG + chr3_1:86922412-86922431 Msa0383880:CDS 50.0%
TGGACTCTCTCTAGCAGTTG+TGG + chr3_1:86922970-86922989 Msa0383880:CDS 50.0%
TCTCTAGCAGTTGTGGTGTC+AGG + chr3_1:86922977-86922996 Msa0383880:CDS 50.0%
AGCCAAGTGAACCACATAGG+AGG - chr3_1:86923471-86923490 None:intergenic 50.0%
! GCATTTGGTGATCACACTCC+AGG + chr3_1:86923496-86923515 Msa0383880:CDS 50.0%
AAACCAGTGAGGATGTTCCC+TGG - chr3_1:86923517-86923536 None:intergenic 50.0%
!!! GGGAACATCCTCACTGGTTT+TGG + chr3_1:86923517-86923536 Msa0383880:CDS 50.0%
CCCAAAGCAACCAACCAGAA+GGG - chr3_1:86923553-86923572 None:intergenic 50.0%
! CCCTTCTGGTTGGTTGCTTT+GGG + chr3_1:86923550-86923569 Msa0383880:CDS 50.0%
! CCTTCTGGTTGGTTGCTTTG+GGG + chr3_1:86923551-86923570 Msa0383880:CDS 50.0%
AATGGCCACAGTCATTGCCA+TGG + chr3_1:86923872-86923891 Msa0383880:CDS 50.0%
CATTGCCATGGCAATGACTG+TGG - chr3_1:86923880-86923899 None:intergenic 50.0%
ATCGGGAAGAAGACGATGAG+TGG - chr3_1:86923951-86923970 None:intergenic 50.0%
GTTTCAGTAGCTGCTGCAGT+TGG + chr3_1:86924056-86924075 Msa0383880:CDS 50.0%
! GCTGCAGTTGGTTCCATTCA+TGG + chr3_1:86924068-86924087 Msa0383880:CDS 50.0%
CTAGTTAGTGGGGAGGGGAT+AGG - chr3_1:86919623-86919642 None:intergenic 55.0%
CAAAGGTCGGTCGAGTCAGT+AGG - chr3_1:86920453-86920472 None:intergenic 55.0%
CCCCTCCTTCTCTGTGAATG+TGG - chr3_1:86920876-86920895 None:intergenic 55.0%
!! ATAACAGTGGTGGTGGGTGC+AGG + chr3_1:86921959-86921978 Msa0383880:CDS 55.0%
!! CAGGAGTGTTGGCTCTAGCA+TGG + chr3_1:86921978-86921997 Msa0383880:CDS 55.0%
CAGGCCGTTCATGCTTACCT+AGG + chr3_1:86922142-86922161 Msa0383880:CDS 55.0%
CTCATCTGTGTGCTTTCCGG+TGG - chr3_1:86923406-86923425 None:intergenic 55.0%
ACTCCAGGGAACATCCTCAC+TGG + chr3_1:86923511-86923530 Msa0383880:CDS 55.0%
! GCCCTTCTGGTTGGTTGCTT+TGG + chr3_1:86923549-86923568 Msa0383880:CDS 55.0%
CCCCAAAGCAACCAACCAGA+AGG - chr3_1:86923554-86923573 None:intergenic 55.0%
TGAACGCGGCCACATCATGT+TGG - chr3_1:86923760-86923779 None:intergenic 55.0%
ACATGGGGCCAGTGAGGTGA+GGG - chr3_1:86920612-86920631 None:intergenic 60.0%
GACATGGGGCCAGTGAGGTG+AGG - chr3_1:86920613-86920632 None:intergenic 65.0%
!! GGTGGTGGGTGCAGGAGTGT+TGG + chr3_1:86921967-86921986 Msa0383880:CDS 65.0%
ATTAGGGGGGGTGGGGTGAG+CGG - chr3_1:86922746-86922765 None:intergenic 65.0%
TTAGGGGGGGTGGGGTGAGC+GGG - chr3_1:86922745-86922764 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 86918870 86924301 86918870 ID=Msa0383880;Name=Msa0383880
chr3_1 mRNA 86918870 86924301 86918870 ID=Msa0383880-mRNA-1;Parent=Msa0383880;Name=Msa0383880-mRNA-1;_AED=0.26;_eAED=0.26;_QI=1450|1|1|1|0.75|0.66|9|162|471
chr3_1 exon 86918870 86919057 86918870 ID=Msa0383880-mRNA-1:exon:23114;Parent=Msa0383880-mRNA-1
chr3_1 exon 86919157 86920378 86919157 ID=Msa0383880-mRNA-1:exon:23115;Parent=Msa0383880-mRNA-1
chr3_1 exon 86921181 86921299 86921181 ID=Msa0383880-mRNA-1:exon:23116;Parent=Msa0383880-mRNA-1
chr3_1 exon 86921930 86922163 86921930 ID=Msa0383880-mRNA-1:exon:23117;Parent=Msa0383880-mRNA-1
chr3_1 exon 86922372 86922465 86922372 ID=Msa0383880-mRNA-1:exon:23118;Parent=Msa0383880-mRNA-1
chr3_1 exon 86922781 86922998 86922781 ID=Msa0383880-mRNA-1:exon:23119;Parent=Msa0383880-mRNA-1
chr3_1 exon 86923133 86923272 86923133 ID=Msa0383880-mRNA-1:exon:23120;Parent=Msa0383880-mRNA-1
chr3_1 exon 86923385 86923612 86923385 ID=Msa0383880-mRNA-1:exon:23121;Parent=Msa0383880-mRNA-1
chr3_1 exon 86923717 86924301 86923717 ID=Msa0383880-mRNA-1:exon:23122;Parent=Msa0383880-mRNA-1
chr3_1 five_prime_UTR 86918870 86919057 86918870 ID=Msa0383880-mRNA-1:five_prime_utr;Parent=Msa0383880-mRNA-1
chr3_1 five_prime_UTR 86919157 86920378 86919157 ID=Msa0383880-mRNA-1:five_prime_utr;Parent=Msa0383880-mRNA-1
chr3_1 five_prime_UTR 86921181 86921220 86921181 ID=Msa0383880-mRNA-1:five_prime_utr;Parent=Msa0383880-mRNA-1
chr3_1 CDS 86921221 86921299 86921221 ID=Msa0383880-mRNA-1:cds;Parent=Msa0383880-mRNA-1
chr3_1 CDS 86921930 86922163 86921930 ID=Msa0383880-mRNA-1:cds;Parent=Msa0383880-mRNA-1
chr3_1 CDS 86922372 86922465 86922372 ID=Msa0383880-mRNA-1:cds;Parent=Msa0383880-mRNA-1
chr3_1 CDS 86922781 86922998 86922781 ID=Msa0383880-mRNA-1:cds;Parent=Msa0383880-mRNA-1
chr3_1 CDS 86923133 86923272 86923133 ID=Msa0383880-mRNA-1:cds;Parent=Msa0383880-mRNA-1
chr3_1 CDS 86923385 86923612 86923385 ID=Msa0383880-mRNA-1:cds;Parent=Msa0383880-mRNA-1
chr3_1 CDS 86923717 86924139 86923717 ID=Msa0383880-mRNA-1:cds;Parent=Msa0383880-mRNA-1
chr3_1 three_prime_UTR 86924140 86924301 86924140 ID=Msa0383880-mRNA-1:three_prime_utr;Parent=Msa0383880-mRNA-1
Gene Sequence

>Msa0383880

ATGGAGGCTGAAAAGGGTGTGTCTATCAAACAGTACTCAAATGAGGAAGTGGATGATGACGGAAGAATCAAGAGAACCGGGAACGTGTTGACAGCAACAACACACATAATAACAGTGGTGGTGGGTGCAGGAGTGTTGGCTCTAGCATGGGCAATTTCTCAACTAGGATGGATAGCTGGCATACTTGTTATGATCACATTTTCATCCATTTCTATTTACACTTACAATCTTATAGCTGATTGTTATAGATATCCAGACTCGGTTAATGGCAAGAGAAATTACACTTATATGCAGGCCGTTCATGCTTACCTAGGTGGAACAATGCACATATTTTGTGGATTGATTCAGTATGGGAAACTCGCTGGGATTACAGTGGGCTACACTATAACTTGCTCTACAAGCATGGTGGCTATAAAGAAATTGATTTGCTTCCACAAAAATGGCCATGAAGCTTATTGCAAGTTTTCAAATAATCCTTACATGCTCGGTTTTGGGATCCTTCAGATTTTATTGTCTCAAATCCCAAATTTCCATAAGTTAACATTGATATCAACTGTTGCTGCAATTACCTCTTTTGGTTATGCATTAATTGGAAGTGGACTCTCTCTAGCAGTTGTGGTGTCAGGGAAAGGAGAAAGAACCAGTTTGTTTGGAACCAAAGTAGGACCAAGGTTATCAGAAGAAGACAAAATTTGGAAAGTTTTGACTGCTTTGGGAAACATTGCACTTGCTTGCTCTTATGCTACTGTTGTCTATGATATAATGGACACATTAAAGTCAAATCCACCGGAAAGCACACAGATGAGAAAGGCAAATGTGTTGGGGATCACTACAATGACAATACTTTTCCTCCTATGTGGTTCACTTGGCTATGCTGCATTTGGTGATCACACTCCAGGGAACATCCTCACTGGTTTTGGATTTTATGAGCCCTTCTGGTTGGTTGCTTTGGGGAATGTATGCATTATAGTCCATATGGTAGGAGCATATCAGGTGTTAGCTCAGCCAATATTTCGTATAGTTGAAATGGGTGCCAACATGATGTGGCCGCGTTCATCTTTCATAAATGAAGAACACCCAAACAAAATTGGCTCTTTGACATTCAACATCAACTTATTTAGACTAATTTGGAGGACAATATTTGTGATAATGGCCACAGTCATTGCCATGGCAATGCCATTCTTCAACGAGTTTCTTGCATTGCTTGGAGCATTTGGATTTTGGCCACTCATCGTCTTCTTCCCGATACAAATGCACATCTCTCAGAAACATATAAACAGATTTTCATTGAAGTGGTGTGTGCTCCAACTATTGAGTCTTGTTTGTTTTTTTGTTTCAGTAGCTGCTGCAGTTGGTTCCATTCATGGAATTAGTAAGAATATCACAAAATACAAACTCTTCATGTATAAACAATAG
Protein sequence

>Msa0383880

MEAEKGVSIKQYSNEEVDDDGRIKRTGNVLTATTHIITVVVGAGVLALAWAISQLGWIAGILVMITFSSISIYTYNLIADCYRYPDSVNGKRNYTYMQAVHAYLGGTMHIFCGLIQYGKLAGITVGYTITCSTSMVAIKKLICFHKNGHEAYCKFSNNPYMLGFGILQILLSQIPNFHKLTLISTVAAITSFGYALIGSGLSLAVVVSGKGERTSLFGTKVGPRLSEEDKIWKVLTALGNIALACSYATVVYDIMDTLKSNPPESTQMRKANVLGITTMTILFLLCGSLGYAAFGDHTPGNILTGFGFYEPFWLVALGNVCIIVHMVGAYQVLAQPIFRIVEMGANMMWPRSSFINEEHPNKIGSLTFNINLFRLIWRTIFVIMATVIAMAMPFFNEFLALLGAFGFWPLIVFFPIQMHISQKHINRFSLKWCVLQLLSLVCFFVSVAAAVGSIHGISKNITKYKLFMYKQ*