AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0787360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0787360 MtrunA17_Chr5g0400081 97.902 143 3 0 1 143 742 884 6.98e-92 284
Msa0787360 MtrunA17_Chr4g0055151 88.811 143 16 0 1 143 746 888 3.99e-84 263
Msa0787360 MtrunA17_Chr1g0192761 46.296 108 58 0 24 131 860 967 1.58e-28 109
Msa0787360 MtrunA17_Chr1g0192711 45.370 108 57 1 24 131 69 174 1.72e-28 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0787360 AT5G47040.1 82.639 144 24 1 1 143 745 888 2.45e-77 246
Msa0787360 AT5G26860.1 48.148 108 56 0 24 131 871 978 3.09e-29 112
Msa0787360 AT3G05790.2 46.491 114 61 0 18 131 814 927 4.15e-29 111
Msa0787360 AT3G05790.1 46.491 114 61 0 18 131 825 938 4.67e-29 111
Msa0787360 AT3G05780.1 44.954 109 60 0 24 132 813 921 1.56e-28 109

Find 81 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGACACTAGGAAGGGTTTC+AGG 0.270699 5_2:-73044061 Msa0787360:three_prime_UTR
ACCATCGGTGCTGGCCAATT+TGG 0.275970 5_2:-73044565 Msa0787360:CDS
TCGCAATAATTGAATCATAA+TGG 0.282315 5_2:+73044208 None:intergenic
AAGTCCTTTAAGTTCCTTTC+AGG 0.285807 5_2:+73044600 None:intergenic
CCTACCTGAAAGGAACTTAA+AGG 0.295993 5_2:-73044604 Msa0787360:CDS
CGCAATAATTGAATCATAAT+GGG 0.296929 5_2:+73044209 None:intergenic
TCCGGTGGTTTCTAGAGTTT+TGG 0.304397 5_2:+73044140 None:intergenic
CCGATTGCAATGTTTAATAA+AGG 0.315445 5_2:-73043758 Msa0787360:three_prime_UTR
CAGTAAAATAGCCACATAAA+TGG 0.352796 5_2:+73043861 None:intergenic
CCAGCTGAAGGCCCATCTTT+AGG 0.362695 5_2:+73045536 None:intergenic
AACAGAGTTTACCTCCAAAT+TGG 0.372227 5_2:+73044551 None:intergenic
CATAAATGAGGCCAGGGAAG+AGG 0.382330 5_2:+73043895 None:intergenic
AACATTTGCTCAGGTTGAAT+AGG 0.396182 5_2:+73043945 None:intergenic
CCTTTATTAAACATTGCAAT+CGG 0.409739 5_2:+73043758 None:intergenic
AACATTGCAATCGGGCCAAC+TGG 0.410054 5_2:+73043767 None:intergenic
GAATCATAATGGGGCCTTCA+AGG 0.413344 5_2:+73044219 None:intergenic
ATACTAGCTGCACATCGATA+TGG 0.430794 5_2:-73044642 Msa0787360:CDS
TGACTGGAGAGATGACTTTG+AGG 0.459709 5_2:-73045448 Msa0787360:CDS
ATGTTTAATAAAGGTATGTT+TGG 0.462414 5_2:-73043749 Msa0787360:three_prime_UTR
TAGAGAGACAACATTTGCTC+AGG 0.465094 5_2:+73043936 None:intergenic
TGATTCAATTATTGCGACAC+TGG 0.466263 5_2:-73044202 Msa0787360:three_prime_UTR
AAGAGCAACTGATCTCAAAC+TGG 0.477594 5_2:-73045627 Msa0787360:CDS
CTTTATTAAACATTGCAATC+GGG 0.478044 5_2:+73043759 None:intergenic
TGTGACTTTAGTCACAGCTT+TGG 0.480340 5_2:-73045513 Msa0787360:CDS
AACTCTAGAAACCACCGGAT+TGG 0.486513 5_2:-73044136 Msa0787360:three_prime_UTR
CTTTGTAATACCCTCTTCCC+TGG 0.488604 5_2:-73043906 Msa0787360:three_prime_UTR
TCCAAATTGGCCAGCACCGA+TGG 0.490360 5_2:+73044564 None:intergenic
TGTTGGTGGTATCAAGGATA+AGG 0.493185 5_2:-73045411 Msa0787360:intron
AACTTTGAGTGTTGTCTCCA+AGG 0.494499 5_2:+73044252 None:intergenic
CCTAAAGATGGGCCTTCAGC+TGG 0.495256 5_2:-73045536 Msa0787360:CDS
AGTTGTAACTGTATCCTTGA+AGG 0.495686 5_2:-73044233 Msa0787360:exon
TGAAGTGCCACCATCGGTGC+TGG 0.499180 5_2:-73044574 Msa0787360:CDS
TCTTTAGGTACTGCACCTGC+AGG 0.506064 5_2:+73045551 None:intergenic
GCAGGTGCAGTACCTAAAGA+TGG 0.507102 5_2:-73045548 Msa0787360:CDS
TTAGCTCTTAAATGTGTACA+AGG 0.509617 5_2:-73043801 Msa0787360:three_prime_UTR
GAAACCCTTCCTAGTGTCCA+TGG 0.510355 5_2:+73044064 None:intergenic
ATGTCAGCTCCCTTCCAATC+CGG 0.512252 5_2:+73044122 None:intergenic
ACTACCTGTTGGTGGTATCA+AGG 0.514302 5_2:-73045417 Msa0787360:CDS
GACTGGAGAGATGACTTTGA+GGG 0.516889 5_2:-73045447 Msa0787360:CDS
ATCGGTGCTGGCCAATTTGG+AGG 0.520600 5_2:-73044562 Msa0787360:intron
GATTCAATTATTGCGACACT+GGG 0.521727 5_2:-73044201 Msa0787360:three_prime_UTR
AGATCTGATACCGCTATGAC+TGG 0.524335 5_2:-73045464 Msa0787360:CDS
GGTGAGCATTAATCTGTTGG+AGG 0.526627 5_2:-73045597 Msa0787360:CDS
CCTTTAAGTTCCTTTCAGGT+AGG 0.529882 5_2:+73044604 None:intergenic
TGAAAGGAACTTAAAGGACT+TGG 0.530014 5_2:-73044598 Msa0787360:CDS
TTATCCTTGATACCACCAAC+AGG 0.532012 5_2:+73045413 None:intergenic
AAATTAACATAAATGAGGCC+AGG 0.533717 5_2:+73043888 None:intergenic
ATAAATGAGGCCAGGGAAGA+GGG 0.534241 5_2:+73043896 None:intergenic
TCAGGTTGAATAGGTACAGC+TGG 0.538639 5_2:+73043954 None:intergenic
ACTTTGAGTGTTGTCTCCAA+GGG 0.540729 5_2:+73044253 None:intergenic
CTAGAAACCACCGGATTGGA+AGG 0.546177 5_2:-73044132 Msa0787360:three_prime_UTR
TGCGGTGAGCATTAATCTGT+TGG 0.551507 5_2:-73045600 Msa0787360:CDS
AATTAACATAAATGAGGCCA+GGG 0.559635 5_2:+73043889 None:intergenic
ATACATATACATTTCCCTGC+AGG 0.560721 5_2:-73045566 Msa0787360:CDS
AAGGGAGCACTTTAGCCAGT+TGG 0.566243 5_2:-73043782 Msa0787360:three_prime_UTR
AGGGGTCTAGTACTACCTGT+TGG 0.573314 5_2:-73045428 Msa0787360:CDS
AGTGTACCACCATGGACACT+AGG 0.575646 5_2:-73044073 Msa0787360:three_prime_UTR
GGTCTAGTACTACCTGTTGG+TGG 0.575809 5_2:-73045425 Msa0787360:CDS
TGATCTCAAACTGGCTGCTG+CGG 0.587312 5_2:-73045618 Msa0787360:CDS
CAGGTGCAGTACCTAAAGAT+GGG 0.595150 5_2:-73045547 Msa0787360:CDS
TACCACCATGGACACTAGGA+AGG 0.596686 5_2:-73044069 Msa0787360:three_prime_UTR
CTTGGTTGAAGTGCCACCAT+CGG 0.597442 5_2:-73044580 Msa0787360:CDS
AAATTGGCCAGCACCGATGG+TGG 0.597978 5_2:+73044567 None:intergenic
GTGAGCATTAATCTGTTGGA+GGG 0.600831 5_2:-73045596 Msa0787360:CDS
GATACTGCTTGCGAAACGAA+TGG 0.605902 5_2:-73044310 Msa0787360:CDS
TCAGCTCCCTTCCAATCCGG+TGG 0.613214 5_2:+73044125 None:intergenic
CAGGGAAGAGGGTATTACAA+AGG 0.616158 5_2:+73043907 None:intergenic
AGAGAGTCATCCTACCTGAA+AGG 0.617338 5_2:-73044614 Msa0787360:CDS
ACTAAAGTCACACCAGCTGA+AGG 0.622524 5_2:+73045524 None:intergenic
ACCAAAACTCTAGAAACCAC+CGG 0.629632 5_2:-73044141 Msa0787360:three_prime_UTR
TAGAAACCACCGGATTGGAA+GGG 0.644819 5_2:-73044131 Msa0787360:three_prime_UTR
CTTTAGGTACTGCACCTGCA+GGG 0.647269 5_2:+73045552 None:intergenic
GCAATAATTGAATCATAATG+GGG 0.658341 5_2:+73044210 None:intergenic
CATGATTGAGTGTACCACCA+TGG 0.671210 5_2:-73044081 Msa0787360:three_prime_UTR
TAGCTCTTAAATGTGTACAA+GGG 0.676060 5_2:-73043800 Msa0787360:three_prime_UTR
ACTGGAGAGATGACTTTGAG+GGG 0.676799 5_2:-73045446 Msa0787360:CDS
ACCACCATGGACACTAGGAA+GGG 0.680613 5_2:-73044068 Msa0787360:three_prime_UTR
ACTGCTTGCGAAACGAATGG+AGG 0.694617 5_2:-73044307 Msa0787360:CDS
AGTCATCTCTCCAGTCATAG+CGG 0.711714 5_2:+73045454 None:intergenic
ACCCTTCCTAGTGTCCATGG+TGG 0.744517 5_2:+73044067 None:intergenic
ATTCAATTATTGCGACACTG+GGG 0.753732 5_2:-73044200 Msa0787360:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAATTAACAATCTT+CGG - chr5_2:73044656-73044675 Msa0787360:intron 10.0%
!! AATACTTACAAAAAAAATTA+TGG + chr5_2:73045391-73045410 None:intergenic 10.0%
!! AAATAAAAATTAACAATCTT+CGG - chr5_2:73044656-73044675 Msa0787360:intron 10.0%
!! AATACTTACAAAAAAAATTA+TGG + chr5_2:73045391-73045410 None:intergenic 10.0%
!! TAATGAAATTACTTTACTAA+TGG + chr5_2:73044114-73044133 None:intergenic 15.0%
!!! CTAATACTATTTTAGAATTA+GGG + chr5_2:73044316-73044335 None:intergenic 15.0%
!!! TCTAATACTATTTTAGAATT+AGG + chr5_2:73044317-73044336 None:intergenic 15.0%
!! TAATGAAATTACTTTACTAA+TGG + chr5_2:73044114-73044133 None:intergenic 15.0%
!!! CTAATACTATTTTAGAATTA+GGG + chr5_2:73044316-73044335 None:intergenic 15.0%
!!! TCTAATACTATTTTAGAATT+AGG + chr5_2:73044317-73044336 None:intergenic 15.0%
!! ATTCAGTAGAAAGTTTATAT+TGG + chr5_2:73044018-73044037 None:intergenic 20.0%
!! AAAGTAATTTCATTATTGCA+CGG - chr5_2:73044119-73044138 Msa0787360:three_prime_UTR 20.0%
!! AATTGCTTATGATTAAAAAG+TGG - chr5_2:73044688-73044707 Msa0787360:intron 20.0%
!! GTAAAACAAAAAAATAAGCA+GGG + chr5_2:73045010-73045029 None:intergenic 20.0%
!! TATCTGTATATTCATTTCAT+TGG + chr5_2:73045055-73045074 None:intergenic 20.0%
!! TTACAAAAAAAATTATGGAG+TGG + chr5_2:73045386-73045405 None:intergenic 20.0%
!!! AAGTATTTTTCTTTTGCTTT+TGG - chr5_2:73045404-73045423 Msa0787360:intron 20.0%
!! GCAAAAAATTAACATAAATG+AGG + chr5_2:73045501-73045520 None:intergenic 20.0%
!!! TTAATTTTTTGCCATTTATG+TGG - chr5_2:73045509-73045528 Msa0787360:CDS 20.0%
!!! ATGTTTAATAAAGGTATGTT+TGG - chr5_2:73045632-73045651 Msa0787360:CDS 20.0%
!! ATTCAGTAGAAAGTTTATAT+TGG + chr5_2:73044018-73044037 None:intergenic 20.0%
!! AAAGTAATTTCATTATTGCA+CGG - chr5_2:73044119-73044138 Msa0787360:three_prime_UTR 20.0%
!! AATTGCTTATGATTAAAAAG+TGG - chr5_2:73044688-73044707 Msa0787360:intron 20.0%
!! GTAAAACAAAAAAATAAGCA+GGG + chr5_2:73045010-73045029 None:intergenic 20.0%
!! TATCTGTATATTCATTTCAT+TGG + chr5_2:73045055-73045074 None:intergenic 20.0%
!! TTACAAAAAAAATTATGGAG+TGG + chr5_2:73045386-73045405 None:intergenic 20.0%
!!! AAGTATTTTTCTTTTGCTTT+TGG - chr5_2:73045404-73045423 Msa0787360:intron 20.0%
!! GCAAAAAATTAACATAAATG+AGG + chr5_2:73045501-73045520 None:intergenic 20.0%
!!! TTAATTTTTTGCCATTTATG+TGG - chr5_2:73045509-73045528 Msa0787360:CDS 20.0%
!!! ATGTTTAATAAAGGTATGTT+TGG - chr5_2:73045632-73045651 Msa0787360:CDS 20.0%
!! GTATGTTTCTTGCATTTTTA+TGG - chr5_2:73043992-73044011 Msa0787360:three_prime_UTR 25.0%
! CTGAACATAAGTTTATAAGT+GGG - chr5_2:73044444-73044463 Msa0787360:intron 25.0%
! TGAACATAAGTTTATAAGTG+GGG - chr5_2:73044445-73044464 Msa0787360:intron 25.0%
! GTAAGTATTAGAATTTGAGT+TGG + chr5_2:73044516-73044535 None:intergenic 25.0%
!!! ATACGAATACTTTTTATACC+TGG - chr5_2:73044617-73044636 Msa0787360:CDS 25.0%
!! ATTTATCACTATTTCTTGTC+CGG - chr5_2:73044944-73044963 Msa0787360:intron 25.0%
! CGTAAAACAAAAAAATAAGC+AGG + chr5_2:73045011-73045030 None:intergenic 25.0%
! ATTTCATTGGTGAGTTATTA+GGG + chr5_2:73045042-73045061 None:intergenic 25.0%
! GCAATAATTGAATCATAATG+GGG + chr5_2:73045174-73045193 None:intergenic 25.0%
! CGCAATAATTGAATCATAAT+GGG + chr5_2:73045175-73045194 None:intergenic 25.0%
! TCGCAATAATTGAATCATAA+TGG + chr5_2:73045176-73045195 None:intergenic 25.0%
! CTTTATTAAACATTGCAATC+GGG + chr5_2:73045625-73045644 None:intergenic 25.0%
! CCTTTATTAAACATTGCAAT+CGG + chr5_2:73045626-73045645 None:intergenic 25.0%
!! TTAATAAAGGTATGTTTGGT+TGG - chr5_2:73045636-73045655 Msa0787360:CDS 25.0%
!! GTATGTTTCTTGCATTTTTA+TGG - chr5_2:73043992-73044011 Msa0787360:three_prime_UTR 25.0%
! CTGAACATAAGTTTATAAGT+GGG - chr5_2:73044444-73044463 Msa0787360:intron 25.0%
! TGAACATAAGTTTATAAGTG+GGG - chr5_2:73044445-73044464 Msa0787360:intron 25.0%
! GTAAGTATTAGAATTTGAGT+TGG + chr5_2:73044516-73044535 None:intergenic 25.0%
!!! ATACGAATACTTTTTATACC+TGG - chr5_2:73044617-73044636 Msa0787360:CDS 25.0%
!! ATTTATCACTATTTCTTGTC+CGG - chr5_2:73044944-73044963 Msa0787360:intron 25.0%
! CGTAAAACAAAAAAATAAGC+AGG + chr5_2:73045011-73045030 None:intergenic 25.0%
! ATTTCATTGGTGAGTTATTA+GGG + chr5_2:73045042-73045061 None:intergenic 25.0%
! GCAATAATTGAATCATAATG+GGG + chr5_2:73045174-73045193 None:intergenic 25.0%
! CGCAATAATTGAATCATAAT+GGG + chr5_2:73045175-73045194 None:intergenic 25.0%
! TCGCAATAATTGAATCATAA+TGG + chr5_2:73045176-73045195 None:intergenic 25.0%
! CTTTATTAAACATTGCAATC+GGG + chr5_2:73045625-73045644 None:intergenic 25.0%
! CCTTTATTAAACATTGCAAT+CGG + chr5_2:73045626-73045645 None:intergenic 25.0%
GTTAGTAGCAAATATGCAAT+TGG - chr5_2:73044060-73044079 Msa0787360:three_prime_UTR 30.0%
CTGAGCATAAGTTTATAAGT+GGG - chr5_2:73044241-73044260 Msa0787360:exon 30.0%
TGAGCATAAGTTTATAAGTG+GGG - chr5_2:73044242-73044261 Msa0787360:exon 30.0%
CCACTTATAAACTTATGTTC+AGG + chr5_2:73044446-73044465 None:intergenic 30.0%
CCTGAACATAAGTTTATAAG+TGG - chr5_2:73044443-73044462 Msa0787360:intron 30.0%
! ATTTTGTAGTAGTTGTGAAC+CGG - chr5_2:73044866-73044885 Msa0787360:intron 30.0%
CATATTCAGTACTTGATACT+AGG - chr5_2:73044890-73044909 Msa0787360:intron 30.0%
GATACTAGGTTAGACATATT+TGG - chr5_2:73044904-73044923 Msa0787360:intron 30.0%
AAACATTCTATCGTAAAGAC+CGG + chr5_2:73044966-73044985 None:intergenic 30.0%
!!! AGAATGTTTTGAAAACACAG+TGG - chr5_2:73044977-73044996 Msa0787360:intron 30.0%
CATTTCATTGGTGAGTTATT+AGG + chr5_2:73045043-73045062 None:intergenic 30.0%
CAAAAAAAATTATGGAGTGG+TGG + chr5_2:73045383-73045402 None:intergenic 30.0%
AATTAACATAAATGAGGCCA+GGG + chr5_2:73045495-73045514 None:intergenic 30.0%
AAATTAACATAAATGAGGCC+AGG + chr5_2:73045496-73045515 None:intergenic 30.0%
CAGTAAAATAGCCACATAAA+TGG + chr5_2:73045523-73045542 None:intergenic 30.0%
!! ACCATTATTTTTCACGAACA+AGG - chr5_2:73045550-73045569 Msa0787360:CDS 30.0%
!! CCATTATTTTTCACGAACAA+GGG - chr5_2:73045551-73045570 Msa0787360:CDS 30.0%
! TTAGCTCTTAAATGTGTACA+AGG - chr5_2:73045580-73045599 Msa0787360:CDS 30.0%
TAGCTCTTAAATGTGTACAA+GGG - chr5_2:73045581-73045600 Msa0787360:CDS 30.0%
CCGATTGCAATGTTTAATAA+AGG - chr5_2:73045623-73045642 Msa0787360:CDS 30.0%
GTTAGTAGCAAATATGCAAT+TGG - chr5_2:73044060-73044079 Msa0787360:three_prime_UTR 30.0%
CTGAGCATAAGTTTATAAGT+GGG - chr5_2:73044241-73044260 Msa0787360:exon 30.0%
TGAGCATAAGTTTATAAGTG+GGG - chr5_2:73044242-73044261 Msa0787360:exon 30.0%
CCACTTATAAACTTATGTTC+AGG + chr5_2:73044446-73044465 None:intergenic 30.0%
CCTGAACATAAGTTTATAAG+TGG - chr5_2:73044443-73044462 Msa0787360:intron 30.0%
! ATTTTGTAGTAGTTGTGAAC+CGG - chr5_2:73044866-73044885 Msa0787360:intron 30.0%
CATATTCAGTACTTGATACT+AGG - chr5_2:73044890-73044909 Msa0787360:intron 30.0%
GATACTAGGTTAGACATATT+TGG - chr5_2:73044904-73044923 Msa0787360:intron 30.0%
AAACATTCTATCGTAAAGAC+CGG + chr5_2:73044966-73044985 None:intergenic 30.0%
!!! AGAATGTTTTGAAAACACAG+TGG - chr5_2:73044977-73044996 Msa0787360:intron 30.0%
CATTTCATTGGTGAGTTATT+AGG + chr5_2:73045043-73045062 None:intergenic 30.0%
CAAAAAAAATTATGGAGTGG+TGG + chr5_2:73045383-73045402 None:intergenic 30.0%
AATTAACATAAATGAGGCCA+GGG + chr5_2:73045495-73045514 None:intergenic 30.0%
AAATTAACATAAATGAGGCC+AGG + chr5_2:73045496-73045515 None:intergenic 30.0%
CAGTAAAATAGCCACATAAA+TGG + chr5_2:73045523-73045542 None:intergenic 30.0%
!! ACCATTATTTTTCACGAACA+AGG - chr5_2:73045550-73045569 Msa0787360:CDS 30.0%
!! CCATTATTTTTCACGAACAA+GGG - chr5_2:73045551-73045570 Msa0787360:CDS 30.0%
! TTAGCTCTTAAATGTGTACA+AGG - chr5_2:73045580-73045599 Msa0787360:CDS 30.0%
TAGCTCTTAAATGTGTACAA+GGG - chr5_2:73045581-73045600 Msa0787360:CDS 30.0%
CCGATTGCAATGTTTAATAA+AGG - chr5_2:73045623-73045642 Msa0787360:CDS 30.0%
ATACATATACATTTCCCTGC+AGG - chr5_2:73043815-73043834 Msa0787360:three_prime_UTR 35.0%
!! GCTTATGAATGGTGGATATT+AGG - chr5_2:73044165-73044184 Msa0787360:three_prime_UTR 35.0%
CCACTTATAAACTTATGCTC+AGG + chr5_2:73044243-73044262 None:intergenic 35.0%
CCTGAGCATAAGTTTATAAG+TGG - chr5_2:73044240-73044259 Msa0787360:exon 35.0%
ATTCTATGCAAGATTCGTTC+AGG - chr5_2:73044336-73044355 Msa0787360:intron 35.0%
! GGTTTATTGTTTCTTGCCAT+CGG + chr5_2:73044576-73044595 None:intergenic 35.0%
GATGGCAAGAAACAATAAAC+CGG - chr5_2:73044575-73044594 Msa0787360:CDS 35.0%
ATAGTGATCAGAGAGTTATC+CGG + chr5_2:73044597-73044616 None:intergenic 35.0%
TTGATGTATGCATTTAAGCC+AGG + chr5_2:73044638-73044657 None:intergenic 35.0%
! AAGTCCTTTAAGTTCCTTTC+AGG + chr5_2:73044784-73044803 None:intergenic 35.0%
TGAAAGGAACTTAAAGGACT+TGG - chr5_2:73044783-73044802 Msa0787360:intron 35.0%
AACAGAGTTTACCTCCAAAT+TGG + chr5_2:73044833-73044852 None:intergenic 35.0%
! TTTTGTAGTAGTTGTGAACC+GGG - chr5_2:73044867-73044886 Msa0787360:intron 35.0%
!! TATCAAGTACTGAATATGCC+CGG + chr5_2:73044888-73044907 None:intergenic 35.0%
! TTAGAACAAGCTTTTGACAG+TGG - chr5_2:73045102-73045121 Msa0787360:intron 35.0%
! TAGAACAAGCTTTTGACAGT+GGG - chr5_2:73045103-73045122 Msa0787360:intron 35.0%
AGTTGTAACTGTATCCTTGA+AGG - chr5_2:73045148-73045167 Msa0787360:intron 35.0%
TGATTCAATTATTGCGACAC+TGG - chr5_2:73045179-73045198 Msa0787360:intron 35.0%
GATTCAATTATTGCGACACT+GGG - chr5_2:73045180-73045199 Msa0787360:intron 35.0%
ATTCAATTATTGCGACACTG+GGG - chr5_2:73045181-73045200 Msa0787360:intron 35.0%
!!! TCTAGAGTTTTGGTTGATCA+CGG + chr5_2:73045234-73045253 None:intergenic 35.0%
!! AACATTTGCTCAGGTTGAAT+AGG + chr5_2:73045439-73045458 None:intergenic 35.0%
CCCTTGTTCGTGAAAAATAA+TGG + chr5_2:73045554-73045573 None:intergenic 35.0%
ATACATATACATTTCCCTGC+AGG - chr5_2:73043815-73043834 Msa0787360:three_prime_UTR 35.0%
!! GCTTATGAATGGTGGATATT+AGG - chr5_2:73044165-73044184 Msa0787360:three_prime_UTR 35.0%
CCACTTATAAACTTATGCTC+AGG + chr5_2:73044243-73044262 None:intergenic 35.0%
CCTGAGCATAAGTTTATAAG+TGG - chr5_2:73044240-73044259 Msa0787360:exon 35.0%
ATTCTATGCAAGATTCGTTC+AGG - chr5_2:73044336-73044355 Msa0787360:intron 35.0%
! GGTTTATTGTTTCTTGCCAT+CGG + chr5_2:73044576-73044595 None:intergenic 35.0%
GATGGCAAGAAACAATAAAC+CGG - chr5_2:73044575-73044594 Msa0787360:CDS 35.0%
ATAGTGATCAGAGAGTTATC+CGG + chr5_2:73044597-73044616 None:intergenic 35.0%
TTGATGTATGCATTTAAGCC+AGG + chr5_2:73044638-73044657 None:intergenic 35.0%
! AAGTCCTTTAAGTTCCTTTC+AGG + chr5_2:73044784-73044803 None:intergenic 35.0%
TGAAAGGAACTTAAAGGACT+TGG - chr5_2:73044783-73044802 Msa0787360:intron 35.0%
AACAGAGTTTACCTCCAAAT+TGG + chr5_2:73044833-73044852 None:intergenic 35.0%
! TTTTGTAGTAGTTGTGAACC+GGG - chr5_2:73044867-73044886 Msa0787360:intron 35.0%
!! TATCAAGTACTGAATATGCC+CGG + chr5_2:73044888-73044907 None:intergenic 35.0%
! TTAGAACAAGCTTTTGACAG+TGG - chr5_2:73045102-73045121 Msa0787360:intron 35.0%
! TAGAACAAGCTTTTGACAGT+GGG - chr5_2:73045103-73045122 Msa0787360:intron 35.0%
AGTTGTAACTGTATCCTTGA+AGG - chr5_2:73045148-73045167 Msa0787360:intron 35.0%
TGATTCAATTATTGCGACAC+TGG - chr5_2:73045179-73045198 Msa0787360:intron 35.0%
GATTCAATTATTGCGACACT+GGG - chr5_2:73045180-73045199 Msa0787360:intron 35.0%
ATTCAATTATTGCGACACTG+GGG - chr5_2:73045181-73045200 Msa0787360:intron 35.0%
!!! TCTAGAGTTTTGGTTGATCA+CGG + chr5_2:73045234-73045253 None:intergenic 35.0%
!! AACATTTGCTCAGGTTGAAT+AGG + chr5_2:73045439-73045458 None:intergenic 35.0%
CCCTTGTTCGTGAAAAATAA+TGG + chr5_2:73045554-73045573 None:intergenic 35.0%
AAGAGCAACTGATCTCAAAC+TGG - chr5_2:73043754-73043773 Msa0787360:three_prime_UTR 40.0%
GTGAGCATTAATCTGTTGGA+GGG - chr5_2:73043785-73043804 Msa0787360:three_prime_UTR 40.0%
TGTGACTTTAGTCACAGCTT+TGG - chr5_2:73043868-73043887 Msa0787360:three_prime_UTR 40.0%
TTATCCTTGATACCACCAAC+AGG + chr5_2:73043971-73043990 None:intergenic 40.0%
!! TGTTGGTGGTATCAAGGATA+AGG - chr5_2:73043970-73043989 Msa0787360:three_prime_UTR 40.0%
AGCACCTCAATGCTTATGAA+TGG - chr5_2:73044154-73044173 Msa0787360:three_prime_UTR 40.0%
ACCTCAATGCTTATGAATGG+TGG - chr5_2:73044157-73044176 Msa0787360:three_prime_UTR 40.0%
! TCCACCATTCATAAGCATTG+AGG + chr5_2:73044161-73044180 None:intergenic 40.0%
! TGGTGGATATTAGGACTTTC+TGG - chr5_2:73044174-73044193 Msa0787360:three_prime_UTR 40.0%
GGATATTAGGACTTTCTGGA+TGG - chr5_2:73044178-73044197 Msa0787360:three_prime_UTR 40.0%
GTCACGCATTCAATGAGATA+TGG - chr5_2:73044217-73044236 Msa0787360:three_prime_UTR 40.0%
!! CCTTACAAGCCAGTTTTGTA+GGG - chr5_2:73044274-73044293 Msa0787360:CDS 40.0%
TAACTCGATCCCTACAAAAC+TGG + chr5_2:73044286-73044305 None:intergenic 40.0%
!! AGTTTTGTAGGGATCGAGTT+AGG - chr5_2:73044285-73044304 Msa0787360:CDS 40.0%
AACTTATGTTCAGGCCATAG+AGG + chr5_2:73044437-73044456 None:intergenic 40.0%
ACAATCATCACCTTACAAGC+TGG - chr5_2:73044468-73044487 Msa0787360:intron 40.0%
!!! ACCTTACAAGCTGGTTTTGT+AGG - chr5_2:73044477-73044496 Msa0787360:intron 40.0%
!!! CCTTACAAGCTGGTTTTGTA+GGG - chr5_2:73044478-73044497 Msa0787360:intron 40.0%
!!! CTTACAAGCTGGTTTTGTAG+GGG - chr5_2:73044479-73044498 Msa0787360:intron 40.0%
! GCACTAGTTAGCTTAGTGTA+GGG + chr5_2:73044548-73044567 None:intergenic 40.0%
! TGCACTAGTTAGCTTAGTGT+AGG + chr5_2:73044549-73044568 None:intergenic 40.0%
! TTATTGTTTCTTGCCATCGG+CGG + chr5_2:73044573-73044592 None:intergenic 40.0%
ATACTAGCTGCACATCGATA+TGG - chr5_2:73044739-73044758 Msa0787360:intron 40.0%
! CCTTTAAGTTCCTTTCAGGT+AGG + chr5_2:73044780-73044799 None:intergenic 40.0%
CCTACCTGAAAGGAACTTAA+AGG - chr5_2:73044777-73044796 Msa0787360:intron 40.0%
! ACTTTGAGTGTTGTCTCCAA+GGG + chr5_2:73045131-73045150 None:intergenic 40.0%
! AACTTTGAGTGTTGTCTCCA+AGG + chr5_2:73045132-73045151 None:intergenic 40.0%
! ACCAAAACTCTAGAAACCAC+CGG - chr5_2:73045240-73045259 Msa0787360:intron 40.0%
TAGAGAGACAACATTTGCTC+AGG + chr5_2:73045448-73045467 None:intergenic 40.0%
AAGAGCAACTGATCTCAAAC+TGG - chr5_2:73043754-73043773 Msa0787360:three_prime_UTR 40.0%
GTGAGCATTAATCTGTTGGA+GGG - chr5_2:73043785-73043804 Msa0787360:three_prime_UTR 40.0%
TGTGACTTTAGTCACAGCTT+TGG - chr5_2:73043868-73043887 Msa0787360:three_prime_UTR 40.0%
TTATCCTTGATACCACCAAC+AGG + chr5_2:73043971-73043990 None:intergenic 40.0%
!! TGTTGGTGGTATCAAGGATA+AGG - chr5_2:73043970-73043989 Msa0787360:three_prime_UTR 40.0%
AGCACCTCAATGCTTATGAA+TGG - chr5_2:73044154-73044173 Msa0787360:three_prime_UTR 40.0%
ACCTCAATGCTTATGAATGG+TGG - chr5_2:73044157-73044176 Msa0787360:three_prime_UTR 40.0%
! TCCACCATTCATAAGCATTG+AGG + chr5_2:73044161-73044180 None:intergenic 40.0%
! TGGTGGATATTAGGACTTTC+TGG - chr5_2:73044174-73044193 Msa0787360:three_prime_UTR 40.0%
GGATATTAGGACTTTCTGGA+TGG - chr5_2:73044178-73044197 Msa0787360:three_prime_UTR 40.0%
GTCACGCATTCAATGAGATA+TGG - chr5_2:73044217-73044236 Msa0787360:three_prime_UTR 40.0%
!! CCTTACAAGCCAGTTTTGTA+GGG - chr5_2:73044274-73044293 Msa0787360:CDS 40.0%
TAACTCGATCCCTACAAAAC+TGG + chr5_2:73044286-73044305 None:intergenic 40.0%
!! AGTTTTGTAGGGATCGAGTT+AGG - chr5_2:73044285-73044304 Msa0787360:CDS 40.0%
AACTTATGTTCAGGCCATAG+AGG + chr5_2:73044437-73044456 None:intergenic 40.0%
ACAATCATCACCTTACAAGC+TGG - chr5_2:73044468-73044487 Msa0787360:intron 40.0%
!!! ACCTTACAAGCTGGTTTTGT+AGG - chr5_2:73044477-73044496 Msa0787360:intron 40.0%
!!! CCTTACAAGCTGGTTTTGTA+GGG - chr5_2:73044478-73044497 Msa0787360:intron 40.0%
!!! CTTACAAGCTGGTTTTGTAG+GGG - chr5_2:73044479-73044498 Msa0787360:intron 40.0%
! GCACTAGTTAGCTTAGTGTA+GGG + chr5_2:73044548-73044567 None:intergenic 40.0%
! TGCACTAGTTAGCTTAGTGT+AGG + chr5_2:73044549-73044568 None:intergenic 40.0%
! TTATTGTTTCTTGCCATCGG+CGG + chr5_2:73044573-73044592 None:intergenic 40.0%
ATACTAGCTGCACATCGATA+TGG - chr5_2:73044739-73044758 Msa0787360:intron 40.0%
! CCTTTAAGTTCCTTTCAGGT+AGG + chr5_2:73044780-73044799 None:intergenic 40.0%
CCTACCTGAAAGGAACTTAA+AGG - chr5_2:73044777-73044796 Msa0787360:intron 40.0%
! ACTTTGAGTGTTGTCTCCAA+GGG + chr5_2:73045131-73045150 None:intergenic 40.0%
! AACTTTGAGTGTTGTCTCCA+AGG + chr5_2:73045132-73045151 None:intergenic 40.0%
! ACCAAAACTCTAGAAACCAC+CGG - chr5_2:73045240-73045259 Msa0787360:intron 40.0%
TAGAGAGACAACATTTGCTC+AGG + chr5_2:73045448-73045467 None:intergenic 40.0%
TGCGGTGAGCATTAATCTGT+TGG - chr5_2:73043781-73043800 Msa0787360:three_prime_UTR 45.0%
GGTGAGCATTAATCTGTTGG+AGG - chr5_2:73043784-73043803 Msa0787360:three_prime_UTR 45.0%
CAGGTGCAGTACCTAAAGAT+GGG - chr5_2:73043834-73043853 Msa0787360:three_prime_UTR 45.0%
ACTAAAGTCACACCAGCTGA+AGG + chr5_2:73043860-73043879 None:intergenic 45.0%
AGATCTGATACCGCTATGAC+TGG - chr5_2:73043917-73043936 Msa0787360:three_prime_UTR 45.0%
AGTCATCTCTCCAGTCATAG+CGG + chr5_2:73043930-73043949 None:intergenic 45.0%
TGACTGGAGAGATGACTTTG+AGG - chr5_2:73043933-73043952 Msa0787360:three_prime_UTR 45.0%
GACTGGAGAGATGACTTTGA+GGG - chr5_2:73043934-73043953 Msa0787360:three_prime_UTR 45.0%
ACTGGAGAGATGACTTTGAG+GGG - chr5_2:73043935-73043954 Msa0787360:three_prime_UTR 45.0%
!! ACTACCTGTTGGTGGTATCA+AGG - chr5_2:73043964-73043983 Msa0787360:three_prime_UTR 45.0%
!! GCCTTACAAGCCAGTTTTGT+AGG - chr5_2:73044273-73044292 Msa0787360:CDS 45.0%
!! CCCTACAAAACTGGCTTGTA+AGG + chr5_2:73044277-73044296 None:intergenic 45.0%
ATGTCCAGTCCTCTGTGTAA+GGG - chr5_2:73044398-73044417 Msa0787360:intron 45.0%
TTAAAACCCCCCTTACACAG+AGG + chr5_2:73044410-73044429 None:intergenic 45.0%
!!! GGGGTTTTAAGAGTCCTCTA+TGG - chr5_2:73044420-73044439 Msa0787360:intron 45.0%
CCCTACAAAACCAGCTTGTA+AGG + chr5_2:73044481-73044500 None:intergenic 45.0%
!! GGTTTTGTAGGGGTTGAGTT+AGG - chr5_2:73044489-73044508 Msa0787360:intron 45.0%
TTAGCTTAGTGTAGGGAGAC+TGG + chr5_2:73044541-73044560 None:intergenic 45.0%
AGAGAGTCATCCTACCTGAA+AGG - chr5_2:73044767-73044786 Msa0787360:intron 45.0%
GATACTGCTTGCGAAACGAA+TGG - chr5_2:73045071-73045090 Msa0787360:intron 45.0%
! GAATCATAATGGGGCCTTCA+AGG + chr5_2:73045165-73045184 None:intergenic 45.0%
!!! TCCGGTGGTTTCTAGAGTTT+TGG + chr5_2:73045244-73045263 None:intergenic 45.0%
! AACTCTAGAAACCACCGGAT+TGG - chr5_2:73045245-73045264 Msa0787360:intron 45.0%
! TAGAAACCACCGGATTGGAA+GGG - chr5_2:73045250-73045269 Msa0787360:intron 45.0%
CATGATTGAGTGTACCACCA+TGG - chr5_2:73045300-73045319 Msa0787360:intron 45.0%
!! TCAGGTTGAATAGGTACAGC+TGG + chr5_2:73045430-73045449 None:intergenic 45.0%
!! CAGGGAAGAGGGTATTACAA+AGG + chr5_2:73045477-73045496 None:intergenic 45.0%
CTTTGTAATACCCTCTTCCC+TGG - chr5_2:73045475-73045494 Msa0787360:CDS 45.0%
ATAAATGAGGCCAGGGAAGA+GGG + chr5_2:73045488-73045507 None:intergenic 45.0%
TGCGGTGAGCATTAATCTGT+TGG - chr5_2:73043781-73043800 Msa0787360:three_prime_UTR 45.0%
GGTGAGCATTAATCTGTTGG+AGG - chr5_2:73043784-73043803 Msa0787360:three_prime_UTR 45.0%
CAGGTGCAGTACCTAAAGAT+GGG - chr5_2:73043834-73043853 Msa0787360:three_prime_UTR 45.0%
ACTAAAGTCACACCAGCTGA+AGG + chr5_2:73043860-73043879 None:intergenic 45.0%
AGATCTGATACCGCTATGAC+TGG - chr5_2:73043917-73043936 Msa0787360:three_prime_UTR 45.0%
AGTCATCTCTCCAGTCATAG+CGG + chr5_2:73043930-73043949 None:intergenic 45.0%
TGACTGGAGAGATGACTTTG+AGG - chr5_2:73043933-73043952 Msa0787360:three_prime_UTR 45.0%
GACTGGAGAGATGACTTTGA+GGG - chr5_2:73043934-73043953 Msa0787360:three_prime_UTR 45.0%
ACTGGAGAGATGACTTTGAG+GGG - chr5_2:73043935-73043954 Msa0787360:three_prime_UTR 45.0%
!! ACTACCTGTTGGTGGTATCA+AGG - chr5_2:73043964-73043983 Msa0787360:three_prime_UTR 45.0%
!! GCCTTACAAGCCAGTTTTGT+AGG - chr5_2:73044273-73044292 Msa0787360:CDS 45.0%
!! CCCTACAAAACTGGCTTGTA+AGG + chr5_2:73044277-73044296 None:intergenic 45.0%
ATGTCCAGTCCTCTGTGTAA+GGG - chr5_2:73044398-73044417 Msa0787360:intron 45.0%
TTAAAACCCCCCTTACACAG+AGG + chr5_2:73044410-73044429 None:intergenic 45.0%
!!! GGGGTTTTAAGAGTCCTCTA+TGG - chr5_2:73044420-73044439 Msa0787360:intron 45.0%
CCCTACAAAACCAGCTTGTA+AGG + chr5_2:73044481-73044500 None:intergenic 45.0%
!! GGTTTTGTAGGGGTTGAGTT+AGG - chr5_2:73044489-73044508 Msa0787360:intron 45.0%
TTAGCTTAGTGTAGGGAGAC+TGG + chr5_2:73044541-73044560 None:intergenic 45.0%
AGAGAGTCATCCTACCTGAA+AGG - chr5_2:73044767-73044786 Msa0787360:intron 45.0%
GATACTGCTTGCGAAACGAA+TGG - chr5_2:73045071-73045090 Msa0787360:intron 45.0%
! GAATCATAATGGGGCCTTCA+AGG + chr5_2:73045165-73045184 None:intergenic 45.0%
!!! TCCGGTGGTTTCTAGAGTTT+TGG + chr5_2:73045244-73045263 None:intergenic 45.0%
! AACTCTAGAAACCACCGGAT+TGG - chr5_2:73045245-73045264 Msa0787360:intron 45.0%
! TAGAAACCACCGGATTGGAA+GGG - chr5_2:73045250-73045269 Msa0787360:intron 45.0%
CATGATTGAGTGTACCACCA+TGG - chr5_2:73045300-73045319 Msa0787360:intron 45.0%
!! TCAGGTTGAATAGGTACAGC+TGG + chr5_2:73045430-73045449 None:intergenic 45.0%
!! CAGGGAAGAGGGTATTACAA+AGG + chr5_2:73045477-73045496 None:intergenic 45.0%
CTTTGTAATACCCTCTTCCC+TGG - chr5_2:73045475-73045494 Msa0787360:CDS 45.0%
ATAAATGAGGCCAGGGAAGA+GGG + chr5_2:73045488-73045507 None:intergenic 45.0%
TGATCTCAAACTGGCTGCTG+CGG - chr5_2:73043763-73043782 Msa0787360:three_prime_UTR 50.0%
! CTTTAGGTACTGCACCTGCA+GGG + chr5_2:73043832-73043851 None:intergenic 50.0%
! TCTTTAGGTACTGCACCTGC+AGG + chr5_2:73043833-73043852 None:intergenic 50.0%
GCAGGTGCAGTACCTAAAGA+TGG - chr5_2:73043833-73043852 Msa0787360:three_prime_UTR 50.0%
AGGGGTCTAGTACTACCTGT+TGG - chr5_2:73043953-73043972 Msa0787360:three_prime_UTR 50.0%
GGTCTAGTACTACCTGTTGG+TGG - chr5_2:73043956-73043975 Msa0787360:three_prime_UTR 50.0%
AATAGCTGGGACCTGATAGC+AGG + chr5_2:73044364-73044383 None:intergenic 50.0%
GCTATCAGGTCCCAGCTATT+AGG - chr5_2:73044364-73044383 Msa0787360:intron 50.0%
CGGAGCATGACCTAATAGCT+GGG + chr5_2:73044377-73044396 None:intergenic 50.0%
CCAGCTATTAGGTCATGCTC+CGG - chr5_2:73044375-73044394 Msa0787360:intron 50.0%
TACACAGAGGACTGGACATC+CGG + chr5_2:73044397-73044416 None:intergenic 50.0%
GATGTCCAGTCCTCTGTGTA+AGG - chr5_2:73044397-73044416 Msa0787360:intron 50.0%
TGTCCAGTCCTCTGTGTAAG+GGG - chr5_2:73044399-73044418 Msa0787360:intron 50.0%
! CTTGGTTGAAGTGCCACCAT+CGG - chr5_2:73044801-73044820 Msa0787360:intron 50.0%
ACTGCTTGCGAAACGAATGG+AGG - chr5_2:73045074-73045093 Msa0787360:intron 50.0%
! CTAGAAACCACCGGATTGGA+AGG - chr5_2:73045249-73045268 Msa0787360:intron 50.0%
ATGTCAGCTCCCTTCCAATC+CGG + chr5_2:73045262-73045281 None:intergenic 50.0%
AGTGTACCACCATGGACACT+AGG - chr5_2:73045308-73045327 Msa0787360:intron 50.0%
TACCACCATGGACACTAGGA+AGG - chr5_2:73045312-73045331 Msa0787360:intron 50.0%
ACCACCATGGACACTAGGAA+GGG - chr5_2:73045313-73045332 Msa0787360:intron 50.0%
GAAACCCTTCCTAGTGTCCA+TGG + chr5_2:73045320-73045339 None:intergenic 50.0%
TGGACACTAGGAAGGGTTTC+AGG - chr5_2:73045320-73045339 Msa0787360:intron 50.0%
CATAAATGAGGCCAGGGAAG+AGG + chr5_2:73045489-73045508 None:intergenic 50.0%
!! AAGGGAGCACTTTAGCCAGT+TGG - chr5_2:73045599-73045618 Msa0787360:CDS 50.0%
AACATTGCAATCGGGCCAAC+TGG + chr5_2:73045617-73045636 None:intergenic 50.0%
TGATCTCAAACTGGCTGCTG+CGG - chr5_2:73043763-73043782 Msa0787360:three_prime_UTR 50.0%
! CTTTAGGTACTGCACCTGCA+GGG + chr5_2:73043832-73043851 None:intergenic 50.0%
! TCTTTAGGTACTGCACCTGC+AGG + chr5_2:73043833-73043852 None:intergenic 50.0%
GCAGGTGCAGTACCTAAAGA+TGG - chr5_2:73043833-73043852 Msa0787360:three_prime_UTR 50.0%
AGGGGTCTAGTACTACCTGT+TGG - chr5_2:73043953-73043972 Msa0787360:three_prime_UTR 50.0%
GGTCTAGTACTACCTGTTGG+TGG - chr5_2:73043956-73043975 Msa0787360:three_prime_UTR 50.0%
AATAGCTGGGACCTGATAGC+AGG + chr5_2:73044364-73044383 None:intergenic 50.0%
GCTATCAGGTCCCAGCTATT+AGG - chr5_2:73044364-73044383 Msa0787360:intron 50.0%
CGGAGCATGACCTAATAGCT+GGG + chr5_2:73044377-73044396 None:intergenic 50.0%
CCAGCTATTAGGTCATGCTC+CGG - chr5_2:73044375-73044394 Msa0787360:intron 50.0%
TACACAGAGGACTGGACATC+CGG + chr5_2:73044397-73044416 None:intergenic 50.0%
GATGTCCAGTCCTCTGTGTA+AGG - chr5_2:73044397-73044416 Msa0787360:intron 50.0%
TGTCCAGTCCTCTGTGTAAG+GGG - chr5_2:73044399-73044418 Msa0787360:intron 50.0%
! CTTGGTTGAAGTGCCACCAT+CGG - chr5_2:73044801-73044820 Msa0787360:intron 50.0%
ACTGCTTGCGAAACGAATGG+AGG - chr5_2:73045074-73045093 Msa0787360:intron 50.0%
! CTAGAAACCACCGGATTGGA+AGG - chr5_2:73045249-73045268 Msa0787360:intron 50.0%
ATGTCAGCTCCCTTCCAATC+CGG + chr5_2:73045262-73045281 None:intergenic 50.0%
AGTGTACCACCATGGACACT+AGG - chr5_2:73045308-73045327 Msa0787360:intron 50.0%
TACCACCATGGACACTAGGA+AGG - chr5_2:73045312-73045331 Msa0787360:intron 50.0%
ACCACCATGGACACTAGGAA+GGG - chr5_2:73045313-73045332 Msa0787360:intron 50.0%
GAAACCCTTCCTAGTGTCCA+TGG + chr5_2:73045320-73045339 None:intergenic 50.0%
TGGACACTAGGAAGGGTTTC+AGG - chr5_2:73045320-73045339 Msa0787360:intron 50.0%
CATAAATGAGGCCAGGGAAG+AGG + chr5_2:73045489-73045508 None:intergenic 50.0%
!! AAGGGAGCACTTTAGCCAGT+TGG - chr5_2:73045599-73045618 Msa0787360:CDS 50.0%
AACATTGCAATCGGGCCAAC+TGG + chr5_2:73045617-73045636 None:intergenic 50.0%
CCAGCTGAAGGCCCATCTTT+AGG + chr5_2:73043848-73043867 None:intergenic 55.0%
CCTAAAGATGGGCCTTCAGC+TGG - chr5_2:73043845-73043864 Msa0787360:three_prime_UTR 55.0%
TCGTTCAGGCACCTGCTATC+AGG - chr5_2:73044350-73044369 Msa0787360:intron 55.0%
CCGGAGCATGACCTAATAGC+TGG + chr5_2:73044378-73044397 None:intergenic 55.0%
GTCCAGTCCTCTGTGTAAGG+GGG - chr5_2:73044400-73044419 Msa0787360:intron 55.0%
TCCAGTCCTCTGTGTAAGGG+GGG - chr5_2:73044401-73044420 Msa0787360:intron 55.0%
CTAACTAGTGCAACCGCCGA+TGG - chr5_2:73044557-73044576 Msa0787360:intron 55.0%
!! AAATTGGCCAGCACCGATGG+TGG + chr5_2:73044817-73044836 None:intergenic 55.0%
!! ACCATCGGTGCTGGCCAATT+TGG - chr5_2:73044816-73044835 Msa0787360:intron 55.0%
! TCCAAATTGGCCAGCACCGA+TGG + chr5_2:73044820-73044839 None:intergenic 55.0%
!! ATCGGTGCTGGCCAATTTGG+AGG - chr5_2:73044819-73044838 Msa0787360:intron 55.0%
! CTTTTGACAGTGGGTGCCCT+TGG - chr5_2:73045112-73045131 Msa0787360:intron 55.0%
ACCCTTCCTAGTGTCCATGG+TGG + chr5_2:73045317-73045336 None:intergenic 55.0%
CCAGCTGAAGGCCCATCTTT+AGG + chr5_2:73043848-73043867 None:intergenic 55.0%
CCTAAAGATGGGCCTTCAGC+TGG - chr5_2:73043845-73043864 Msa0787360:three_prime_UTR 55.0%
TCGTTCAGGCACCTGCTATC+AGG - chr5_2:73044350-73044369 Msa0787360:intron 55.0%
CCGGAGCATGACCTAATAGC+TGG + chr5_2:73044378-73044397 None:intergenic 55.0%
GTCCAGTCCTCTGTGTAAGG+GGG - chr5_2:73044400-73044419 Msa0787360:intron 55.0%
TCCAGTCCTCTGTGTAAGGG+GGG - chr5_2:73044401-73044420 Msa0787360:intron 55.0%
CTAACTAGTGCAACCGCCGA+TGG - chr5_2:73044557-73044576 Msa0787360:intron 55.0%
!! AAATTGGCCAGCACCGATGG+TGG + chr5_2:73044817-73044836 None:intergenic 55.0%
!! ACCATCGGTGCTGGCCAATT+TGG - chr5_2:73044816-73044835 Msa0787360:intron 55.0%
! TCCAAATTGGCCAGCACCGA+TGG + chr5_2:73044820-73044839 None:intergenic 55.0%
!! ATCGGTGCTGGCCAATTTGG+AGG - chr5_2:73044819-73044838 Msa0787360:intron 55.0%
! CTTTTGACAGTGGGTGCCCT+TGG - chr5_2:73045112-73045131 Msa0787360:intron 55.0%
ACCCTTCCTAGTGTCCATGG+TGG + chr5_2:73045317-73045336 None:intergenic 55.0%
ACCCCCCTTACACAGAGGAC+TGG + chr5_2:73044405-73044424 None:intergenic 60.0%
! TGAAGTGCCACCATCGGTGC+TGG - chr5_2:73044807-73044826 Msa0787360:intron 60.0%
TCAGCTCCCTTCCAATCCGG+TGG + chr5_2:73045259-73045278 None:intergenic 60.0%
ACCCCCCTTACACAGAGGAC+TGG + chr5_2:73044405-73044424 None:intergenic 60.0%
! TGAAGTGCCACCATCGGTGC+TGG - chr5_2:73044807-73044826 Msa0787360:intron 60.0%
TCAGCTCCCTTCCAATCCGG+TGG + chr5_2:73045259-73045278 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 73043746 73045657 73043746 ID=Msa0787360;Name=Msa0787360
chr5_2 mRNA 73043746 73045657 73043746 ID=Msa0787360-mRNA-1;Parent=Msa0787360;Name=Msa0787360-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0.33|1|1|1|3|502|143
chr5_2 exon 73043746 73044331 73043746 ID=Msa0787360-mRNA-1:exon:22265;Parent=Msa0787360-mRNA-1
chr5_2 exon 73044563 73044664 73044563 ID=Msa0787360-mRNA-1:exon:22264;Parent=Msa0787360-mRNA-1
chr5_2 exon 73045412 73045657 73045412 ID=Msa0787360-mRNA-1:exon:22263;Parent=Msa0787360-mRNA-1
chr5_2 CDS 73045412 73045657 73045412 ID=Msa0787360-mRNA-1:cds;Parent=Msa0787360-mRNA-1
chr5_2 CDS 73044563 73044664 73044563 ID=Msa0787360-mRNA-1:cds;Parent=Msa0787360-mRNA-1
chr5_2 CDS 73044248 73044331 73044248 ID=Msa0787360-mRNA-1:cds;Parent=Msa0787360-mRNA-1
chr5_2 three_prime_UTR 73043746 73044247 73043746 ID=Msa0787360-mRNA-1:three_prime_utr;Parent=Msa0787360-mRNA-1
Gene Sequence

>Msa0787360

GTGAGAGCAAGAGCAACTGATCTCAAACTGGCTGCTGCGGTGAGCATTAATCTGTTGGAGGGTCGTGATATACATATACATTTCCCTGCAGGTGCAGTACCTAAAGATGGGCCTTCAGCTGGTGTGACTTTAGTCACAGCTTTGGTTTCACTTTTCAGTCAGAGAAAAGTGAGATCTGATACCGCTATGACTGGAGAGATGACTTTGAGGGGTCTAGTACTACCTGTTGGTGGTATCAAGGATAAGATACTAGCTGCACATCGATATGGTATTAAGAGAGTCATCCTACCTGAAAGGAACTTAAAGGACTTGGTTGAAGTGCCACCATCGGTGCTGGCCAATTTGGAGATACTGCTTGCGAAACGAATGGAGGATGTGTTAGAACAAGCTTTTGACAGTGGGTGCCCTTGGAGACAACACTCAAAGTTGTAA

Protein sequence

>Msa0787360

VRARATDLKLAAAVSINLLEGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSQRKVRSDTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPERNLKDLVEVPPSVLANLEILLAKRMEDVLEQAFDSGCPWRQHSKL*