AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1331540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331540 MtrunA17_Chr4g0056591 67.823 317 75 2 2 291 456 772 1.05e-146 430
Msa1331540 MtrunA17_Chr4g0056581 95.238 126 6 0 1 126 1 126 2.23e-81 243
Msa1331540 MtrunA17_Chr4g0056571 67.883 137 24 1 177 293 1 137 1.02e-58 184
Msa1331540 MtrunA17_Chr7g0231931 32.915 319 185 4 3 293 427 744 8.84e-56 192
Msa1331540 MtrunA17_Chr2g0286711 31.975 319 170 5 3 293 421 720 7.14e-48 170
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331540 AT1G62750.1 65.300 317 83 2 2 291 460 776 3.26e-141 417
Msa1331540 AT1G45332.2 35.110 319 178 4 3 293 250 567 2.96e-60 201
Msa1331540 AT1G45332.1 35.110 319 178 4 3 293 430 747 4.04e-59 201
Msa1331540 AT2G45030.1 35.110 319 178 4 3 293 430 747 4.43e-59 201
Msa1331540 AT1G56070.3 26.129 310 172 10 2 258 450 755 1.05e-15 77.8
Msa1331540 AT1G56070.2 26.129 310 172 10 2 258 450 755 1.05e-15 77.8
Msa1331540 AT1G56070.1 26.129 310 172 10 2 258 450 755 1.05e-15 77.8
Msa1331540 AT3G12915.2 26.136 264 141 8 44 258 442 700 4.67e-11 63.9
Msa1331540 AT3G22980.1 35.345 116 72 3 2 114 502 617 4.94e-11 63.9
Msa1331540 AT3G22980.3 35.345 116 72 3 2 114 502 617 4.94e-11 63.9
Msa1331540 AT3G22980.2 35.345 116 72 3 2 114 502 617 4.94e-11 63.9

Find 75 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTCTCAAAAGAGAATTTA+AGG 0.150654 8_4:+51084277 Msa1331540:CDS
CTCCATGTCAGCTTTAGTTT+TGG 0.200742 8_4:-51084132 None:intergenic
ACAATTTCAACTTTCATTAT+AGG 0.216886 8_4:-51085075 None:intergenic
TGGTGTTCTAGCCGGCTTTC+CGG 0.222511 8_4:+51084921 Msa1331540:CDS
GTTACTCCTGAAGAACATTT+AGG 0.259112 8_4:+51085096 Msa1331540:CDS
ACATCTCCTAAATGTTCTTC+AGG 0.320044 8_4:-51085102 None:intergenic
CTTCCAGAAGAATTCATTAC+TGG 0.320246 8_4:+51084865 Msa1331540:CDS
TCAATTGCAATCTTAATAAC+AGG 0.329367 8_4:-51084107 None:intergenic
GAACATTTAGGAGATGTAAT+TGG 0.332221 8_4:+51085108 Msa1331540:CDS
TGCTTTCCCTATAGTTTACT+TGG 0.338998 8_4:-51084702 None:intergenic
ATGGATATTGTTACTCTTGT+TGG 0.342618 8_4:+51084005 Msa1331540:CDS
ACCCCAGTAATGAATTCTTC+TGG 0.342666 8_4:-51084868 None:intergenic
GCAATCTTAATAACAGGAAC+AGG 0.342806 8_4:-51084101 None:intergenic
TGTCACAAAAGCTATTGATT+TGG 0.354211 8_4:-51085152 None:intergenic
AAGCTTCTCTTGCTGCCAAC+TGG 0.389694 8_4:-51085011 None:intergenic
TCATCCGGTCCTCTTTATCT+TGG 0.393378 8_4:-51084211 None:intergenic
CATCCGGTCCTCTTTATCTT+GGG 0.397382 8_4:-51084210 None:intergenic
TCAAATTTGTATCCACTACT+TGG 0.404077 8_4:-51084820 None:intergenic
AGGTTCAAGCATTAACGGTT+TGG 0.428422 8_4:-51085055 None:intergenic
GTATCCACTACTTGGGTCCA+TGG 0.429904 8_4:-51084812 None:intergenic
GTCCATGGGTTCAAAATGTA+TGG 0.430865 8_4:-51084797 None:intergenic
ATTATAGGTTCAAGCATTAA+CGG 0.444891 8_4:-51085060 None:intergenic
ATCAAGCACGAATGGACCCT+TGG 0.445699 8_4:-51084066 None:intergenic
TAAAGCTGACATGGAGAAGA+TGG 0.456923 8_4:+51084139 Msa1331540:CDS
TCTTGGGATAAGCGGAAAGA+AGG 0.462771 8_4:-51084194 None:intergenic
TCAAGCACGAATGGACCCTT+GGG 0.462799 8_4:-51084065 None:intergenic
ATGCCTCACTTCTGTGACTT+CGG 0.464378 8_4:-51084728 None:intergenic
CCTACTCAATGCAGTTTGAC+AGG 0.466205 8_4:+51085507 Msa1331540:CDS
GCTTTCCCTATAGTTTACTT+GGG 0.467404 8_4:-51084701 None:intergenic
CGGATGATCATTCAAGGAAC+GGG 0.468533 8_4:+51084227 Msa1331540:CDS
CCGCTTATCCCAAGATAAAG+AGG 0.478110 8_4:+51084202 Msa1331540:CDS
TATCCACTACTTGGGTCCAT+GGG 0.482451 8_4:-51084811 None:intergenic
CATGTGTTCAATAAACAATC+AGG 0.482646 8_4:+51084748 Msa1331540:CDS
TCCATTCGTGCTTGATCAGA+TGG 0.492171 8_4:+51084073 Msa1331540:CDS
CCGTTCCTTGAATGATCATC+CGG 0.511030 8_4:-51084226 None:intergenic
TACACCAACAACCGGAAAGC+CGG 0.518143 8_4:-51084932 None:intergenic
TGAGACGTTGTGTGACCCCA+AGG 0.519530 8_4:+51084049 Msa1331540:CDS
GCAGTTTGACAGGTTTGATA+CGG 0.520423 8_4:+51085517 Msa1331540:CDS
GGAGATGTAATTGGTGATCT+CGG 0.520638 8_4:+51085117 Msa1331540:CDS
GAGGACCGGATGATCATTCA+AGG 0.522038 8_4:+51084221 Msa1331540:CDS
CAAATTTGTATCCACTACTT+GGG 0.533919 8_4:-51084819 None:intergenic
ACTGCGCGTACACCAACAAC+CGG 0.534986 8_4:-51084940 None:intergenic
ATGAGCAATGGTGTTCTAGC+CGG 0.543808 8_4:+51084913 Msa1331540:CDS
TTCCAGAAGAATTCATTACT+GGG 0.551889 8_4:+51084866 Msa1331540:CDS
TCCATCTGATCAAGCACGAA+TGG 0.552084 8_4:-51084074 None:intergenic
GACATGGAGAAGATGGAAGC+TGG 0.555973 8_4:+51084146 Msa1331540:CDS
ATGCAGGTAGAAGCTAATGT+TGG 0.557514 8_4:+51084673 Msa1331540:intron
TGGTGTACGCGCAGTACTTG+TGG 0.572358 8_4:+51084948 Msa1331540:CDS
CTTTCCCTATAGTTTACTTG+GGG 0.575513 8_4:-51084700 None:intergenic
GAACCCATGGACCCAAGTAG+TGG 0.580505 8_4:+51084808 Msa1331540:CDS
AAATGTGAGGGTATTCCAGT+TGG 0.582925 8_4:+51084996 Msa1331540:CDS
CCGGATGATCATTCAAGGAA+CGG 0.584604 8_4:+51084226 Msa1331540:CDS
CCTGTCAAACTGCATTGAGT+AGG 0.586523 8_4:-51085507 None:intergenic
CCTCTTTATCTTGGGATAAG+CGG 0.587821 8_4:-51084202 None:intergenic
GGTTTGAAAGATACTATAGC+CGG 0.593470 8_4:+51084026 Msa1331540:CDS
CTTGGGATAAGCGGAAAGAA+GGG 0.595180 8_4:-51084193 None:intergenic
ACCCAAAACTAAAGCTGACA+TGG 0.611458 8_4:+51084130 Msa1331540:CDS
GGATGGTAATTACCATGATG+TGG 0.612641 8_4:+51084969 Msa1331540:CDS
GGGGTCACACAACGTCTCAC+CGG 0.615808 8_4:-51084045 None:intergenic
TATCCCAAGATAAAGAGGAC+CGG 0.617364 8_4:+51084207 Msa1331540:CDS
GAGACGTTGTGTGACCCCAA+GGG 0.619509 8_4:+51084050 Msa1331540:CDS
TCACATTTGAATCCACATCA+TGG 0.622810 8_4:-51084981 None:intergenic
GCACGTTTGTCAATAATCTG+AGG 0.626574 8_4:-51085567 None:intergenic
TGGTTACATCTGCAAATTGA+CGG 0.633657 8_4:-51084777 None:intergenic
TGGTTTAATCAAGCTTGCAG+AGG 0.635811 8_4:+51084166 Msa1331540:CDS
TCCAGAAGAATTCATTACTG+GGG 0.636103 8_4:+51084867 Msa1331540:CDS
CAATCTTAATAACAGGAACA+GGG 0.636579 8_4:-51084100 None:intergenic
GTGTTCAATAAACAATCAGG+TGG 0.650549 8_4:+51084751 Msa1331540:CDS
TTTCCGAAGTCACAGAAGTG+AGG 0.658776 8_4:+51084725 Msa1331540:CDS
TTGGAAGAGTGCATGAGCAA+TGG 0.663387 8_4:+51084901 Msa1331540:CDS
TGATGTGGATTCAAATGTGA+GGG 0.666011 8_4:+51084984 Msa1331540:CDS
ACTGCATTGAGTAGGATGCA+CGG 0.668859 8_4:-51085499 None:intergenic
GTACGCGCAGTACTTGTGGA+TGG 0.703304 8_4:+51084952 Msa1331540:CDS
ATGATGTGGATTCAAATGTG+AGG 0.710458 8_4:+51084983 Msa1331540:CDS
CAAGCACGAATGGACCCTTG+GGG 0.723589 8_4:-51084064 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCCATTTTTCAAATTATTA+TGG + chr8_4:51085326-51085345 Msa1331540:intron 15.0%
!! ATCCATAATAATTTGAAAAA+TGG - chr8_4:51085331-51085350 None:intergenic 15.0%
!!! TTCCATTTTTCAAATTATTA+TGG + chr8_4:51085326-51085345 Msa1331540:intron 15.0%
!! ATCCATAATAATTTGAAAAA+TGG - chr8_4:51085331-51085350 None:intergenic 15.0%
!! AAGGAAGTAATCATATAATA+GGG - chr8_4:51084546-51084565 None:intergenic 20.0%
!! ACAATTTCAACTTTCATTAT+AGG - chr8_4:51085078-51085097 None:intergenic 20.0%
!! TCAAATTTAATAAATGCACA+TGG - chr8_4:51085217-51085236 None:intergenic 20.0%
!! TGTGCATTTATTAAATTTGA+AGG + chr8_4:51085217-51085236 Msa1331540:intron 20.0%
!! ATATATATTAATGACGTATC+TGG + chr8_4:51085272-51085291 Msa1331540:intron 20.0%
!! AAGGAAGTAATCATATAATA+GGG - chr8_4:51084546-51084565 None:intergenic 20.0%
!! ACAATTTCAACTTTCATTAT+AGG - chr8_4:51085078-51085097 None:intergenic 20.0%
!! TCAAATTTAATAAATGCACA+TGG - chr8_4:51085217-51085236 None:intergenic 20.0%
!! TGTGCATTTATTAAATTTGA+AGG + chr8_4:51085217-51085236 Msa1331540:intron 20.0%
!! ATATATATTAATGACGTATC+TGG + chr8_4:51085272-51085291 Msa1331540:intron 20.0%
! TCAATTGCAATCTTAATAAC+AGG - chr8_4:51084110-51084129 None:intergenic 25.0%
!! ATTTTCTGTATCTGTTAACA+TGG + chr8_4:51084326-51084345 Msa1331540:intron 25.0%
! AACAAATAATCATCCTTGAT+CGG - chr8_4:51084503-51084522 None:intergenic 25.0%
! AGGAAGTAATCATATAATAG+GGG - chr8_4:51084545-51084564 None:intergenic 25.0%
! CAAGGAAGTAATCATATAAT+AGG - chr8_4:51084547-51084566 None:intergenic 25.0%
! TACATAAAACTGATGAAGAT+CGG - chr8_4:51084589-51084608 None:intergenic 25.0%
!! TATCTAATGTTTGTTAATGC+AGG + chr8_4:51084657-51084676 Msa1331540:intron 25.0%
! ATTATAGGTTCAAGCATTAA+CGG - chr8_4:51085063-51085082 None:intergenic 25.0%
! TGAAATGTAACTACAAGTAT+TGG - chr8_4:51085301-51085320 None:intergenic 25.0%
!! GAATATTGTTTTCTTCCTTT+TGG + chr8_4:51085390-51085409 Msa1331540:intron 25.0%
! TCAATTGCAATCTTAATAAC+AGG - chr8_4:51084110-51084129 None:intergenic 25.0%
!! ATTTTCTGTATCTGTTAACA+TGG + chr8_4:51084326-51084345 Msa1331540:intron 25.0%
! AACAAATAATCATCCTTGAT+CGG - chr8_4:51084503-51084522 None:intergenic 25.0%
! AGGAAGTAATCATATAATAG+GGG - chr8_4:51084545-51084564 None:intergenic 25.0%
! CAAGGAAGTAATCATATAAT+AGG - chr8_4:51084547-51084566 None:intergenic 25.0%
! TACATAAAACTGATGAAGAT+CGG - chr8_4:51084589-51084608 None:intergenic 25.0%
!! TATCTAATGTTTGTTAATGC+AGG + chr8_4:51084657-51084676 Msa1331540:intron 25.0%
! ATTATAGGTTCAAGCATTAA+CGG - chr8_4:51085063-51085082 None:intergenic 25.0%
! TGAAATGTAACTACAAGTAT+TGG - chr8_4:51085301-51085320 None:intergenic 25.0%
!! GAATATTGTTTTCTTCCTTT+TGG + chr8_4:51085390-51085409 Msa1331540:intron 25.0%
ATGGATATTGTTACTCTTGT+TGG + chr8_4:51084005-51084024 Msa1331540:CDS 30.0%
CAATCTTAATAACAGGAACA+GGG - chr8_4:51084103-51084122 None:intergenic 30.0%
TCGTCTCAAAAGAGAATTTA+AGG + chr8_4:51084277-51084296 Msa1331540:CDS 30.0%
! CCTTACTTCTTGTTATGATT+TGG - chr8_4:51084400-51084419 None:intergenic 30.0%
CCAAATCATAACAAGAAGTA+AGG + chr8_4:51084397-51084416 Msa1331540:intron 30.0%
TCATGAAAAAAATGCTTACG+AGG + chr8_4:51084440-51084459 Msa1331540:intron 30.0%
ACAGACATGGATTTATTCAA+GGG - chr8_4:51084477-51084496 None:intergenic 30.0%
AAGAAAAAGGAATCATCTCA+AGG - chr8_4:51084565-51084584 None:intergenic 30.0%
! TTTTCCCCAAGTAAACTATA+GGG + chr8_4:51084696-51084715 Msa1331540:CDS 30.0%
CATGTGTTCAATAAACAATC+AGG + chr8_4:51084748-51084767 Msa1331540:CDS 30.0%
CAAATTTGTATCCACTACTT+GGG - chr8_4:51084822-51084841 None:intergenic 30.0%
TCAAATTTGTATCCACTACT+TGG - chr8_4:51084823-51084842 None:intergenic 30.0%
TTCCAGAAGAATTCATTACT+GGG + chr8_4:51084866-51084885 Msa1331540:CDS 30.0%
! TTCATTACTGGGGTTTTTAA+AGG + chr8_4:51084877-51084896 Msa1331540:CDS 30.0%
GAACATTTAGGAGATGTAAT+TGG + chr8_4:51085108-51085127 Msa1331540:CDS 30.0%
! TGTCACAAAAGCTATTGATT+TGG - chr8_4:51085155-51085174 None:intergenic 30.0%
! TATTGTTTTCTTCCTTTTGG+TGG + chr8_4:51085393-51085412 Msa1331540:intron 30.0%
ATGGATATTGTTACTCTTGT+TGG + chr8_4:51084005-51084024 Msa1331540:CDS 30.0%
CAATCTTAATAACAGGAACA+GGG - chr8_4:51084103-51084122 None:intergenic 30.0%
TCGTCTCAAAAGAGAATTTA+AGG + chr8_4:51084277-51084296 Msa1331540:CDS 30.0%
! CCTTACTTCTTGTTATGATT+TGG - chr8_4:51084400-51084419 None:intergenic 30.0%
CCAAATCATAACAAGAAGTA+AGG + chr8_4:51084397-51084416 Msa1331540:intron 30.0%
TCATGAAAAAAATGCTTACG+AGG + chr8_4:51084440-51084459 Msa1331540:intron 30.0%
ACAGACATGGATTTATTCAA+GGG - chr8_4:51084477-51084496 None:intergenic 30.0%
AAGAAAAAGGAATCATCTCA+AGG - chr8_4:51084565-51084584 None:intergenic 30.0%
! TTTTCCCCAAGTAAACTATA+GGG + chr8_4:51084696-51084715 Msa1331540:CDS 30.0%
CATGTGTTCAATAAACAATC+AGG + chr8_4:51084748-51084767 Msa1331540:CDS 30.0%
CAAATTTGTATCCACTACTT+GGG - chr8_4:51084822-51084841 None:intergenic 30.0%
TCAAATTTGTATCCACTACT+TGG - chr8_4:51084823-51084842 None:intergenic 30.0%
TTCCAGAAGAATTCATTACT+GGG + chr8_4:51084866-51084885 Msa1331540:CDS 30.0%
! TTCATTACTGGGGTTTTTAA+AGG + chr8_4:51084877-51084896 Msa1331540:CDS 30.0%
GAACATTTAGGAGATGTAAT+TGG + chr8_4:51085108-51085127 Msa1331540:CDS 30.0%
! TGTCACAAAAGCTATTGATT+TGG - chr8_4:51085155-51085174 None:intergenic 30.0%
! TATTGTTTTCTTCCTTTTGG+TGG + chr8_4:51085393-51085412 Msa1331540:intron 30.0%
GGTTTGAAAGATACTATAGC+CGG + chr8_4:51084026-51084045 Msa1331540:CDS 35.0%
GCAATCTTAATAACAGGAAC+AGG - chr8_4:51084104-51084123 None:intergenic 35.0%
!!! TCCATGTCAGCTTTAGTTTT+GGG - chr8_4:51084134-51084153 None:intergenic 35.0%
!!! TCTTTTGAGACGATCAACAA+TGG - chr8_4:51084270-51084289 None:intergenic 35.0%
GACAGACATGGATTTATTCA+AGG - chr8_4:51084478-51084497 None:intergenic 35.0%
GATGAAGATCGGAAAGAAAA+AGG - chr8_4:51084578-51084597 None:intergenic 35.0%
! GTTTTCCCCAAGTAAACTAT+AGG + chr8_4:51084695-51084714 Msa1331540:CDS 35.0%
CTTTCCCTATAGTTTACTTG+GGG - chr8_4:51084703-51084722 None:intergenic 35.0%
GCTTTCCCTATAGTTTACTT+GGG - chr8_4:51084704-51084723 None:intergenic 35.0%
TGCTTTCCCTATAGTTTACT+TGG - chr8_4:51084705-51084724 None:intergenic 35.0%
GTGTTCAATAAACAATCAGG+TGG + chr8_4:51084751-51084770 Msa1331540:CDS 35.0%
TGGTTACATCTGCAAATTGA+CGG - chr8_4:51084780-51084799 None:intergenic 35.0%
! AACCATACATTTTGAACCCA+TGG + chr8_4:51084795-51084814 Msa1331540:CDS 35.0%
CTTCCAGAAGAATTCATTAC+TGG + chr8_4:51084865-51084884 Msa1331540:CDS 35.0%
TCCAGAAGAATTCATTACTG+GGG + chr8_4:51084867-51084886 Msa1331540:CDS 35.0%
!! TACTGGGGTTTTTAAAGGAT+TGG + chr8_4:51084882-51084901 Msa1331540:CDS 35.0%
TCACATTTGAATCCACATCA+TGG - chr8_4:51084984-51085003 None:intergenic 35.0%
ATGATGTGGATTCAAATGTG+AGG + chr8_4:51084983-51085002 Msa1331540:CDS 35.0%
TGATGTGGATTCAAATGTGA+GGG + chr8_4:51084984-51085003 Msa1331540:CDS 35.0%
GTTACTCCTGAAGAACATTT+AGG + chr8_4:51085096-51085115 Msa1331540:CDS 35.0%
ACATCTCCTAAATGTTCTTC+AGG - chr8_4:51085105-51085124 None:intergenic 35.0%
! AATAGCTTTTGTGACAAACC+AGG + chr8_4:51085159-51085178 Msa1331540:CDS 35.0%
TACTGAAACATCTCAGCAAT+AGG - chr8_4:51085449-51085468 None:intergenic 35.0%
GGTTTGAAAGATACTATAGC+CGG + chr8_4:51084026-51084045 Msa1331540:CDS 35.0%
GCAATCTTAATAACAGGAAC+AGG - chr8_4:51084104-51084123 None:intergenic 35.0%
!!! TCCATGTCAGCTTTAGTTTT+GGG - chr8_4:51084134-51084153 None:intergenic 35.0%
!!! TCTTTTGAGACGATCAACAA+TGG - chr8_4:51084270-51084289 None:intergenic 35.0%
GACAGACATGGATTTATTCA+AGG - chr8_4:51084478-51084497 None:intergenic 35.0%
GATGAAGATCGGAAAGAAAA+AGG - chr8_4:51084578-51084597 None:intergenic 35.0%
! GTTTTCCCCAAGTAAACTAT+AGG + chr8_4:51084695-51084714 Msa1331540:CDS 35.0%
CTTTCCCTATAGTTTACTTG+GGG - chr8_4:51084703-51084722 None:intergenic 35.0%
GCTTTCCCTATAGTTTACTT+GGG - chr8_4:51084704-51084723 None:intergenic 35.0%
TGCTTTCCCTATAGTTTACT+TGG - chr8_4:51084705-51084724 None:intergenic 35.0%
GTGTTCAATAAACAATCAGG+TGG + chr8_4:51084751-51084770 Msa1331540:CDS 35.0%
TGGTTACATCTGCAAATTGA+CGG - chr8_4:51084780-51084799 None:intergenic 35.0%
! AACCATACATTTTGAACCCA+TGG + chr8_4:51084795-51084814 Msa1331540:CDS 35.0%
CTTCCAGAAGAATTCATTAC+TGG + chr8_4:51084865-51084884 Msa1331540:CDS 35.0%
TCCAGAAGAATTCATTACTG+GGG + chr8_4:51084867-51084886 Msa1331540:CDS 35.0%
!! TACTGGGGTTTTTAAAGGAT+TGG + chr8_4:51084882-51084901 Msa1331540:CDS 35.0%
TCACATTTGAATCCACATCA+TGG - chr8_4:51084984-51085003 None:intergenic 35.0%
ATGATGTGGATTCAAATGTG+AGG + chr8_4:51084983-51085002 Msa1331540:CDS 35.0%
TGATGTGGATTCAAATGTGA+GGG + chr8_4:51084984-51085003 Msa1331540:CDS 35.0%
GTTACTCCTGAAGAACATTT+AGG + chr8_4:51085096-51085115 Msa1331540:CDS 35.0%
ACATCTCCTAAATGTTCTTC+AGG - chr8_4:51085105-51085124 None:intergenic 35.0%
! AATAGCTTTTGTGACAAACC+AGG + chr8_4:51085159-51085178 Msa1331540:CDS 35.0%
TACTGAAACATCTCAGCAAT+AGG - chr8_4:51085449-51085468 None:intergenic 35.0%
ACCCAAAACTAAAGCTGACA+TGG + chr8_4:51084130-51084149 Msa1331540:CDS 40.0%
!! CTCCATGTCAGCTTTAGTTT+TGG - chr8_4:51084135-51084154 None:intergenic 40.0%
TAAAGCTGACATGGAGAAGA+TGG + chr8_4:51084139-51084158 Msa1331540:CDS 40.0%
TGGTTTAATCAAGCTTGCAG+AGG + chr8_4:51084166-51084185 Msa1331540:CDS 40.0%
CCTCTTTATCTTGGGATAAG+CGG - chr8_4:51084205-51084224 None:intergenic 40.0%
TATCCCAAGATAAAGAGGAC+CGG + chr8_4:51084207-51084226 Msa1331540:CDS 40.0%
ATGCAGGTAGAAGCTAATGT+TGG + chr8_4:51084673-51084692 Msa1331540:intron 40.0%
GTCCATGGGTTCAAAATGTA+TGG - chr8_4:51084800-51084819 None:intergenic 40.0%
ACCCCAGTAATGAATTCTTC+TGG - chr8_4:51084871-51084890 None:intergenic 40.0%
GGATGGTAATTACCATGATG+TGG + chr8_4:51084969-51084988 Msa1331540:CDS 40.0%
!! AAATGTGAGGGTATTCCAGT+TGG + chr8_4:51084996-51085015 Msa1331540:CDS 40.0%
AGGTTCAAGCATTAACGGTT+TGG - chr8_4:51085058-51085077 None:intergenic 40.0%
! GGAGATGTAATTGGTGATCT+CGG + chr8_4:51085117-51085136 Msa1331540:CDS 40.0%
! CTGTTTTCACAACCACCAAA+AGG - chr8_4:51085408-51085427 None:intergenic 40.0%
!! CTTTTGGTGGTTGTGAAAAC+AGG + chr8_4:51085406-51085425 Msa1331540:intron 40.0%
GCTGAGATGTTTCAGTATGT+CGG + chr8_4:51085452-51085471 Msa1331540:intron 40.0%
TTCAGTATGTCGGTACACTT+AGG + chr8_4:51085462-51085481 Msa1331540:intron 40.0%
TCAGTATGTCGGTACACTTA+GGG + chr8_4:51085463-51085482 Msa1331540:intron 40.0%
GCAGTTTGACAGGTTTGATA+CGG + chr8_4:51085517-51085536 Msa1331540:CDS 40.0%
ACCCAAAACTAAAGCTGACA+TGG + chr8_4:51084130-51084149 Msa1331540:CDS 40.0%
!! CTCCATGTCAGCTTTAGTTT+TGG - chr8_4:51084135-51084154 None:intergenic 40.0%
TAAAGCTGACATGGAGAAGA+TGG + chr8_4:51084139-51084158 Msa1331540:CDS 40.0%
TGGTTTAATCAAGCTTGCAG+AGG + chr8_4:51084166-51084185 Msa1331540:CDS 40.0%
CCTCTTTATCTTGGGATAAG+CGG - chr8_4:51084205-51084224 None:intergenic 40.0%
TATCCCAAGATAAAGAGGAC+CGG + chr8_4:51084207-51084226 Msa1331540:CDS 40.0%
ATGCAGGTAGAAGCTAATGT+TGG + chr8_4:51084673-51084692 Msa1331540:intron 40.0%
GTCCATGGGTTCAAAATGTA+TGG - chr8_4:51084800-51084819 None:intergenic 40.0%
ACCCCAGTAATGAATTCTTC+TGG - chr8_4:51084871-51084890 None:intergenic 40.0%
GGATGGTAATTACCATGATG+TGG + chr8_4:51084969-51084988 Msa1331540:CDS 40.0%
!! AAATGTGAGGGTATTCCAGT+TGG + chr8_4:51084996-51085015 Msa1331540:CDS 40.0%
AGGTTCAAGCATTAACGGTT+TGG - chr8_4:51085058-51085077 None:intergenic 40.0%
! GGAGATGTAATTGGTGATCT+CGG + chr8_4:51085117-51085136 Msa1331540:CDS 40.0%
! CTGTTTTCACAACCACCAAA+AGG - chr8_4:51085408-51085427 None:intergenic 40.0%
!! CTTTTGGTGGTTGTGAAAAC+AGG + chr8_4:51085406-51085425 Msa1331540:intron 40.0%
GCTGAGATGTTTCAGTATGT+CGG + chr8_4:51085452-51085471 Msa1331540:intron 40.0%
TTCAGTATGTCGGTACACTT+AGG + chr8_4:51085462-51085481 Msa1331540:intron 40.0%
TCAGTATGTCGGTACACTTA+GGG + chr8_4:51085463-51085482 Msa1331540:intron 40.0%
GCAGTTTGACAGGTTTGATA+CGG + chr8_4:51085517-51085536 Msa1331540:CDS 40.0%
TCCATTCGTGCTTGATCAGA+TGG + chr8_4:51084073-51084092 Msa1331540:CDS 45.0%
TCCATCTGATCAAGCACGAA+TGG - chr8_4:51084077-51084096 None:intergenic 45.0%
CTTGGGATAAGCGGAAAGAA+GGG - chr8_4:51084196-51084215 None:intergenic 45.0%
TCTTGGGATAAGCGGAAAGA+AGG - chr8_4:51084197-51084216 None:intergenic 45.0%
CCGCTTATCCCAAGATAAAG+AGG + chr8_4:51084202-51084221 Msa1331540:CDS 45.0%
CATCCGGTCCTCTTTATCTT+GGG - chr8_4:51084213-51084232 None:intergenic 45.0%
TCATCCGGTCCTCTTTATCT+TGG - chr8_4:51084214-51084233 None:intergenic 45.0%
CCGTTCCTTGAATGATCATC+CGG - chr8_4:51084229-51084248 None:intergenic 45.0%
CCGGATGATCATTCAAGGAA+CGG + chr8_4:51084226-51084245 Msa1331540:CDS 45.0%
CGGATGATCATTCAAGGAAC+GGG + chr8_4:51084227-51084246 Msa1331540:CDS 45.0%
TTTCCGAAGTCACAGAAGTG+AGG + chr8_4:51084725-51084744 Msa1331540:CDS 45.0%
ATGCCTCACTTCTGTGACTT+CGG - chr8_4:51084731-51084750 None:intergenic 45.0%
TATCCACTACTTGGGTCCAT+GGG - chr8_4:51084814-51084833 None:intergenic 45.0%
! TTGGAAGAGTGCATGAGCAA+TGG + chr8_4:51084901-51084920 Msa1331540:CDS 45.0%
ATGAGCAATGGTGTTCTAGC+CGG + chr8_4:51084913-51084932 Msa1331540:CDS 45.0%
! TGGCAGCAAGAGAAGCTTTT+AGG + chr8_4:51085016-51085035 Msa1331540:CDS 45.0%
! GGCAGCAAGAGAAGCTTTTA+GGG + chr8_4:51085017-51085036 Msa1331540:CDS 45.0%
!! GCAAGAGAAGCTTTTAGGGA+AGG + chr8_4:51085021-51085040 Msa1331540:CDS 45.0%
! AGCTTTTGTGACAAACCAGG+TGG + chr8_4:51085162-51085181 Msa1331540:intron 45.0%
! TTGGTGGTTGTGAAAACAGG+TGG + chr8_4:51085409-51085428 Msa1331540:intron 45.0%
ACTGCATTGAGTAGGATGCA+CGG - chr8_4:51085502-51085521 None:intergenic 45.0%
CCTGTCAAACTGCATTGAGT+AGG - chr8_4:51085510-51085529 None:intergenic 45.0%
CCTACTCAATGCAGTTTGAC+AGG + chr8_4:51085507-51085526 Msa1331540:CDS 45.0%
TCCATTCGTGCTTGATCAGA+TGG + chr8_4:51084073-51084092 Msa1331540:CDS 45.0%
TCCATCTGATCAAGCACGAA+TGG - chr8_4:51084077-51084096 None:intergenic 45.0%
CTTGGGATAAGCGGAAAGAA+GGG - chr8_4:51084196-51084215 None:intergenic 45.0%
TCTTGGGATAAGCGGAAAGA+AGG - chr8_4:51084197-51084216 None:intergenic 45.0%
CCGCTTATCCCAAGATAAAG+AGG + chr8_4:51084202-51084221 Msa1331540:CDS 45.0%
CATCCGGTCCTCTTTATCTT+GGG - chr8_4:51084213-51084232 None:intergenic 45.0%
TCATCCGGTCCTCTTTATCT+TGG - chr8_4:51084214-51084233 None:intergenic 45.0%
CCGTTCCTTGAATGATCATC+CGG - chr8_4:51084229-51084248 None:intergenic 45.0%
CCGGATGATCATTCAAGGAA+CGG + chr8_4:51084226-51084245 Msa1331540:CDS 45.0%
CGGATGATCATTCAAGGAAC+GGG + chr8_4:51084227-51084246 Msa1331540:CDS 45.0%
TTTCCGAAGTCACAGAAGTG+AGG + chr8_4:51084725-51084744 Msa1331540:CDS 45.0%
ATGCCTCACTTCTGTGACTT+CGG - chr8_4:51084731-51084750 None:intergenic 45.0%
TATCCACTACTTGGGTCCAT+GGG - chr8_4:51084814-51084833 None:intergenic 45.0%
! TTGGAAGAGTGCATGAGCAA+TGG + chr8_4:51084901-51084920 Msa1331540:CDS 45.0%
ATGAGCAATGGTGTTCTAGC+CGG + chr8_4:51084913-51084932 Msa1331540:CDS 45.0%
! TGGCAGCAAGAGAAGCTTTT+AGG + chr8_4:51085016-51085035 Msa1331540:CDS 45.0%
! GGCAGCAAGAGAAGCTTTTA+GGG + chr8_4:51085017-51085036 Msa1331540:CDS 45.0%
!! GCAAGAGAAGCTTTTAGGGA+AGG + chr8_4:51085021-51085040 Msa1331540:CDS 45.0%
! AGCTTTTGTGACAAACCAGG+TGG + chr8_4:51085162-51085181 Msa1331540:intron 45.0%
! TTGGTGGTTGTGAAAACAGG+TGG + chr8_4:51085409-51085428 Msa1331540:intron 45.0%
ACTGCATTGAGTAGGATGCA+CGG - chr8_4:51085502-51085521 None:intergenic 45.0%
CCTGTCAAACTGCATTGAGT+AGG - chr8_4:51085510-51085529 None:intergenic 45.0%
CCTACTCAATGCAGTTTGAC+AGG + chr8_4:51085507-51085526 Msa1331540:CDS 45.0%
TCAAGCACGAATGGACCCTT+GGG - chr8_4:51084068-51084087 None:intergenic 50.0%
ATCAAGCACGAATGGACCCT+TGG - chr8_4:51084069-51084088 None:intergenic 50.0%
GACATGGAGAAGATGGAAGC+TGG + chr8_4:51084146-51084165 Msa1331540:CDS 50.0%
GAGGACCGGATGATCATTCA+AGG + chr8_4:51084221-51084240 Msa1331540:CDS 50.0%
CCTTGATCGGATGACAGACA+TGG - chr8_4:51084490-51084509 None:intergenic 50.0%
CCATGTCTGTCATCCGATCA+AGG + chr8_4:51084487-51084506 Msa1331540:intron 50.0%
GTATCCACTACTTGGGTCCA+TGG - chr8_4:51084815-51084834 None:intergenic 50.0%
TACACCAACAACCGGAAAGC+CGG - chr8_4:51084935-51084954 None:intergenic 50.0%
AAGCTTCTCTTGCTGCCAAC+TGG - chr8_4:51085014-51085033 None:intergenic 50.0%
GGTGATCTCGGCAGAAAAAG+AGG + chr8_4:51085129-51085148 Msa1331540:CDS 50.0%
! TGACAAACCAGGTGGACTCA+AGG + chr8_4:51085170-51085189 Msa1331540:intron 50.0%
TGACTTACCTTGAGTCCACC+TGG - chr8_4:51085180-51085199 None:intergenic 50.0%
!! TACACTTAGGGTGCTGACAG+AGG + chr8_4:51085475-51085494 Msa1331540:intron 50.0%
!! ACACTTAGGGTGCTGACAGA+GGG + chr8_4:51085476-51085495 Msa1331540:intron 50.0%
TCAAGCACGAATGGACCCTT+GGG - chr8_4:51084068-51084087 None:intergenic 50.0%
ATCAAGCACGAATGGACCCT+TGG - chr8_4:51084069-51084088 None:intergenic 50.0%
GACATGGAGAAGATGGAAGC+TGG + chr8_4:51084146-51084165 Msa1331540:CDS 50.0%
GAGGACCGGATGATCATTCA+AGG + chr8_4:51084221-51084240 Msa1331540:CDS 50.0%
CCTTGATCGGATGACAGACA+TGG - chr8_4:51084490-51084509 None:intergenic 50.0%
CCATGTCTGTCATCCGATCA+AGG + chr8_4:51084487-51084506 Msa1331540:intron 50.0%
GTATCCACTACTTGGGTCCA+TGG - chr8_4:51084815-51084834 None:intergenic 50.0%
TACACCAACAACCGGAAAGC+CGG - chr8_4:51084935-51084954 None:intergenic 50.0%
AAGCTTCTCTTGCTGCCAAC+TGG - chr8_4:51085014-51085033 None:intergenic 50.0%
GGTGATCTCGGCAGAAAAAG+AGG + chr8_4:51085129-51085148 Msa1331540:CDS 50.0%
! TGACAAACCAGGTGGACTCA+AGG + chr8_4:51085170-51085189 Msa1331540:intron 50.0%
TGACTTACCTTGAGTCCACC+TGG - chr8_4:51085180-51085199 None:intergenic 50.0%
!! TACACTTAGGGTGCTGACAG+AGG + chr8_4:51085475-51085494 Msa1331540:intron 50.0%
!! ACACTTAGGGTGCTGACAGA+GGG + chr8_4:51085476-51085495 Msa1331540:intron 50.0%
TGAGACGTTGTGTGACCCCA+AGG + chr8_4:51084049-51084068 Msa1331540:CDS 55.0%
GAGACGTTGTGTGACCCCAA+GGG + chr8_4:51084050-51084069 Msa1331540:CDS 55.0%
CAAGCACGAATGGACCCTTG+GGG - chr8_4:51084067-51084086 None:intergenic 55.0%
GAACCCATGGACCCAAGTAG+TGG + chr8_4:51084808-51084827 Msa1331540:CDS 55.0%
! TGGTGTTCTAGCCGGCTTTC+CGG + chr8_4:51084921-51084940 Msa1331540:CDS 55.0%
ACTGCGCGTACACCAACAAC+CGG - chr8_4:51084943-51084962 None:intergenic 55.0%
TGGTGTACGCGCAGTACTTG+TGG + chr8_4:51084948-51084967 Msa1331540:CDS 55.0%
GTACGCGCAGTACTTGTGGA+TGG + chr8_4:51084952-51084971 Msa1331540:CDS 55.0%
TGAGACGTTGTGTGACCCCA+AGG + chr8_4:51084049-51084068 Msa1331540:CDS 55.0%
GAGACGTTGTGTGACCCCAA+GGG + chr8_4:51084050-51084069 Msa1331540:CDS 55.0%
CAAGCACGAATGGACCCTTG+GGG - chr8_4:51084067-51084086 None:intergenic 55.0%
GAACCCATGGACCCAAGTAG+TGG + chr8_4:51084808-51084827 Msa1331540:CDS 55.0%
! TGGTGTTCTAGCCGGCTTTC+CGG + chr8_4:51084921-51084940 Msa1331540:CDS 55.0%
ACTGCGCGTACACCAACAAC+CGG - chr8_4:51084943-51084962 None:intergenic 55.0%
TGGTGTACGCGCAGTACTTG+TGG + chr8_4:51084948-51084967 Msa1331540:CDS 55.0%
GTACGCGCAGTACTTGTGGA+TGG + chr8_4:51084952-51084971 Msa1331540:CDS 55.0%
GGGGTCACACAACGTCTCAC+CGG - chr8_4:51084048-51084067 None:intergenic 60.0%
! CTAGCCGGCTTTCCGGTTGT+TGG + chr8_4:51084928-51084947 Msa1331540:CDS 60.0%
GGGGTCACACAACGTCTCAC+CGG - chr8_4:51084048-51084067 None:intergenic 60.0%
! CTAGCCGGCTTTCCGGTTGT+TGG + chr8_4:51084928-51084947 Msa1331540:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 51084005 51085580 51084005 ID=Msa1331540;Name=Msa1331540
chr8_4 mRNA 51084005 51085580 51084005 ID=Msa1331540-mRNA-1;Parent=Msa1331540;Name=Msa1331540-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0.5|0|0.66|1|1|3|0|293
chr8_4 exon 51084005 51084298 51084005 ID=Msa1331540-mRNA-1:exon:15003;Parent=Msa1331540-mRNA-1
chr8_4 exon 51084679 51085180 51084679 ID=Msa1331540-mRNA-1:exon:15004;Parent=Msa1331540-mRNA-1
chr8_4 exon 51085495 51085580 51085495 ID=Msa1331540-mRNA-1:exon:15005;Parent=Msa1331540-mRNA-1
chr8_4 CDS 51084005 51084298 51084005 ID=Msa1331540-mRNA-1:cds;Parent=Msa1331540-mRNA-1
chr8_4 CDS 51084679 51085180 51084679 ID=Msa1331540-mRNA-1:cds;Parent=Msa1331540-mRNA-1
chr8_4 CDS 51085495 51085580 51085495 ID=Msa1331540-mRNA-1:cds;Parent=Msa1331540-mRNA-1
Gene Sequence

>Msa1331540

ATGGATATTGTTACTCTTGTTGGTTTGAAAGATACTATAGCCGGTGAGACGTTGTGTGACCCCAAGGGTCCATTCGTGCTTGATCAGATGGACTTCCCTGTTCCTGTTATTAAGATTGCAATTGAACCCAAAACTAAAGCTGACATGGAGAAGATGGAAGCTGGTTTAATCAAGCTTGCAGAGGAAGACCCTTCTTTCCGCTTATCCCAAGATAAAGAGGACCGGATGATCATTCAAGGAACGGGAGAATTGCATCTTGAAACCATTGTTGATCGTCTCAAAAGAGAATTTAAGGTAGAAGCTAATGTTGGTTTTCCCCAAGTAAACTATAGGGAAAGCATTTCCGAAGTCACAGAAGTGAGGCATGTGTTCAATAAACAATCAGGTGGACACCGTCAATTTGCAGATGTAACCATACATTTTGAACCCATGGACCCAAGTAGTGGATACAAATTTGAGAATAAAATCAAAGAAGAAGCACTTCCAGAAGAATTCATTACTGGGGTTTTTAAAGGATTGGAAGAGTGCATGAGCAATGGTGTTCTAGCCGGCTTTCCGGTTGTTGGTGTACGCGCAGTACTTGTGGATGGTAATTACCATGATGTGGATTCAAATGTGAGGGTATTCCAGTTGGCAGCAAGAGAAGCTTTTAGGGAAGGAATGAGAAAAGCCAAACCGTTAATGCTTGAACCTATAATGAAAGTTGAAATTGTTACTCCTGAAGAACATTTAGGAGATGTAATTGGTGATCTCGGCAGAAAAAGAGGCCAAATCAATAGCTTTTGTGACAAACCAGAGGGCCGTGCATCCTACTCAATGCAGTTTGACAGGTTTGATACGGTATCTCGACACATTCAGAATGAACTTGCCTCAGATTATTGA

Protein sequence

>Msa1331540

MDIVTLVGLKDTIAGETLCDPKGPFVLDQMDFPVPVIKIAIEPKTKADMEKMEAGLIKLAEEDPSFRLSQDKEDRMIIQGTGELHLETIVDRLKREFKVEANVGFPQVNYRESISEVTEVRHVFNKQSGGHRQFADVTIHFEPMDPSSGYKFENKIKEEALPEEFITGVFKGLEECMSNGVLAGFPVVGVRAVLVDGNYHDVDSNVRVFQLAAREAFREGMRKAKPLMLEPIMKVEIVTPEEHLGDVIGDLGRKRGQINSFCDKPEGRASYSMQFDRFDTVSRHIQNELASDY*