AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1207650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1207650 MtrunA17_Chr4g0056591 75.094 265 65 1 2 265 456 720 2.72e-139 410
Msa1207650 MtrunA17_Chr4g0056581 96.825 126 4 0 1 126 1 126 2.17e-83 246
Msa1207650 MtrunA17_Chr7g0231931 38.224 259 156 3 3 258 427 684 5.91e-56 191
Msa1207650 MtrunA17_Chr2g0286711 37.066 259 141 4 3 258 421 660 2.51e-48 170
Msa1207650 MtrunA17_Chr4g0056571 77.528 89 20 0 177 265 1 89 1.27e-43 144
Msa1207650 MtrunA17_Chr2g0311941 26.199 271 147 7 44 265 496 762 8.66e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1207650 AT1G62750.1 72.453 265 72 1 2 265 460 724 8.07e-134 396
Msa1207650 AT1G45332.2 40.541 259 150 3 3 258 250 507 1.96e-59 198
Msa1207650 AT2G45030.1 40.541 259 150 3 3 258 430 687 1.92e-58 198
Msa1207650 AT1G45332.1 40.541 259 150 3 3 258 430 687 1.98e-58 198
Msa1207650 AT1G56070.3 26.129 310 172 10 2 258 450 755 7.86e-16 77.4
Msa1207650 AT1G56070.2 26.129 310 172 10 2 258 450 755 7.86e-16 77.4
Msa1207650 AT1G56070.1 26.129 310 172 10 2 258 450 755 7.86e-16 77.4
Msa1207650 AT3G12915.2 26.136 264 141 8 44 258 442 700 3.77e-11 63.5
Msa1207650 AT3G22980.1 35.345 116 72 3 2 114 502 617 3.81e-11 63.5
Msa1207650 AT3G22980.3 35.345 116 72 3 2 114 502 617 3.81e-11 63.5
Msa1207650 AT3G22980.2 35.345 116 72 3 2 114 502 617 3.81e-11 63.5

Find 70 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTCTCAAAAGAGAATTTA+AGG 0.150654 8_1:-65384915 Msa1207650:intron
CTCCATGTCAGCTTTAGTTT+TGG 0.200742 8_1:+65385060 None:intergenic
ACAATTTCAACTTTCATTAT+AGG 0.216886 8_1:+65384136 None:intergenic
TGGTGTTCTAGCCGGCTTTC+CGG 0.222511 8_1:-65384290 Msa1207650:CDS
GTTACTCCTGAAGAACATTT+AGG 0.259112 8_1:-65384115 Msa1207650:CDS
ACATCTCCTAAATGTTCTTC+AGG 0.320044 8_1:+65384109 None:intergenic
CTTCCAGAAGAATTCATTAC+TGG 0.320246 8_1:-65384346 Msa1207650:CDS
TCAATTGCAATCTTAATAAC+AGG 0.329367 8_1:+65385085 None:intergenic
GAACATTTAGGAGATGTAAT+TGG 0.332221 8_1:-65384103 Msa1207650:CDS
TGCTTTCCCTATAGTTTACT+TGG 0.338998 8_1:+65384509 None:intergenic
ATGGATATTGTTACTCTTGT+TGG 0.342618 8_1:-65385187 Msa1207650:CDS
ACCCCAGTAATGAATTCTTC+TGG 0.342666 8_1:+65384343 None:intergenic
GCAATCTTAATAACAGGAAC+AGG 0.342806 8_1:+65385091 None:intergenic
TGTCACAAAAGCTATTGATT+TGG 0.354211 8_1:+65384059 None:intergenic
TCGTCCGGTCCTCTTTATCT+TGG 0.357888 8_1:+65384981 None:intergenic
AAGCTTCTCTTGCTGCCAAC+TGG 0.389694 8_1:+65384200 None:intergenic
CGTCCGGTCCTCTTTATCTT+GGG 0.401352 8_1:+65384982 None:intergenic
GTATGGTTACATCTGCAAAT+TGG 0.403323 8_1:+65384431 None:intergenic
TCAAATTTGTATCCACTACT+TGG 0.404077 8_1:+65384391 None:intergenic
AGGTTCAAGCATTAACGGTT+TGG 0.428422 8_1:+65384156 None:intergenic
GTATCCACTACTTGGGTCCA+TGG 0.429904 8_1:+65384399 None:intergenic
GTCCATGGGTTCAAAATGTA+TGG 0.430865 8_1:+65384414 None:intergenic
ATTATAGGTTCAAGCATTAA+CGG 0.444891 8_1:+65384151 None:intergenic
ATCAAGCACGAATGGACCCT+TGG 0.445699 8_1:+65385126 None:intergenic
TAAAGCTGACATGGAGAAGA+TGG 0.456923 8_1:-65385053 Msa1207650:CDS
TCTTGGGATAAGCGGAAAGA+AGG 0.462771 8_1:+65384998 None:intergenic
TCAAGCACGAATGGACCCTT+GGG 0.462799 8_1:+65385127 None:intergenic
GCTTTCCCTATAGTTTACTT+GGG 0.467404 8_1:+65384510 None:intergenic
TATGTGTTCAATAAACAATC+AGG 0.472517 8_1:-65384463 Msa1207650:CDS
CCGCTTATCCCAAGATAAAG+AGG 0.478110 8_1:-65384990 Msa1207650:CDS
TATCCACTACTTGGGTCCAT+GGG 0.482451 8_1:+65384400 None:intergenic
ATACCTCACTTCTGTGACTT+CGG 0.483194 8_1:+65384483 None:intergenic
TCCATTCGTGCTTGATCAGA+TGG 0.492171 8_1:-65385119 Msa1207650:CDS
GAGGACCGGACGATCATTCA+AGG 0.514727 8_1:-65384971 Msa1207650:CDS
TACACCAACAACCGGAAAGC+CGG 0.518143 8_1:+65384279 None:intergenic
CCGTTCCTTGAATGATCGTC+CGG 0.518352 8_1:+65384966 None:intergenic
TGAGACGTTGTGTGACCCCA+AGG 0.519530 8_1:-65385143 Msa1207650:CDS
GGAGATGTAATTGGTGATCT+CGG 0.520638 8_1:-65384094 Msa1207650:CDS
CAAATTTGTATCCACTACTT+GGG 0.533919 8_1:+65384392 None:intergenic
ACTGCGCGTACACCAACAAC+CGG 0.534986 8_1:+65384271 None:intergenic
ATGAGCAATGGTGTTCTAGC+CGG 0.543808 8_1:-65384298 Msa1207650:CDS
TTCCAGAAGAATTCATTACT+GGG 0.551889 8_1:-65384345 Msa1207650:CDS
TCCATCTGATCAAGCACGAA+TGG 0.552084 8_1:+65385118 None:intergenic
GACATGGAGAAGATGGAAGC+TGG 0.555973 8_1:-65385046 Msa1207650:CDS
ATGCAGGTAGAAGCTAATGT+TGG 0.557514 8_1:-65384538 Msa1207650:intron
TGGTGTACGCGCAGTACTTG+TGG 0.572358 8_1:-65384263 Msa1207650:CDS
CTTTCCCTATAGTTTACTTG+GGG 0.575513 8_1:+65384511 None:intergenic
GAACCCATGGACCCAAGTAG+TGG 0.580505 8_1:-65384403 Msa1207650:CDS
AAATGTGAGGGTATTCCAGT+TGG 0.582925 8_1:-65384215 Msa1207650:CDS
CCTCTTTATCTTGGGATAAG+CGG 0.587821 8_1:+65384990 None:intergenic
GGTTTGAAAGATACTATAGC+CGG 0.593470 8_1:-65385166 Msa1207650:CDS
CTTGGGATAAGCGGAAAGAA+GGG 0.595180 8_1:+65384999 None:intergenic
ACCCAAAACTAAAGCTGACA+TGG 0.611458 8_1:-65385062 Msa1207650:CDS
GGATGGTAATTACCATGATG+TGG 0.612641 8_1:-65384242 Msa1207650:CDS
GGGGTCACACAACGTCTCAC+CGG 0.615808 8_1:+65385147 None:intergenic
GAGACGTTGTGTGACCCCAA+GGG 0.619509 8_1:-65385142 Msa1207650:CDS
TCACATTTGAATCCACATCA+TGG 0.622810 8_1:+65384230 None:intergenic
CCGGACGATCATTCAAGGAA+CGG 0.623049 8_1:-65384966 Msa1207650:CDS
TGGTTTAATCAAGCTTGCAG+AGG 0.635811 8_1:-65385026 Msa1207650:CDS
TCCAGAAGAATTCATTACTG+GGG 0.636103 8_1:-65384344 Msa1207650:CDS
CAATCTTAATAACAGGAACA+GGG 0.636579 8_1:+65385092 None:intergenic
TGGTTACATCTGCAAATTGG+CGG 0.637647 8_1:+65384434 None:intergenic
TATCCCAAGATAAAGAGGAC+CGG 0.637725 8_1:-65384985 Msa1207650:CDS
GTGTTCAATAAACAATCAGG+TGG 0.650549 8_1:-65384460 Msa1207650:CDS
TTGGAAAAGTGCATGAGCAA+TGG 0.661091 8_1:-65384310 Msa1207650:CDS
TGATGTGGATTCAAATGTGA+GGG 0.666011 8_1:-65384227 Msa1207650:CDS
TTTCCGAAGTCACAGAAGTG+AGG 0.671983 8_1:-65384486 Msa1207650:CDS
GTACGCGCAGTACTTGTGGA+TGG 0.703304 8_1:-65384259 Msa1207650:CDS
ATGATGTGGATTCAAATGTG+AGG 0.710458 8_1:-65384228 Msa1207650:CDS
CAAGCACGAATGGACCCTTG+GGG 0.723589 8_1:+65385128 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGGAAGTAATCATATAATA+GGG + chr8_1:65384576-65384595 None:intergenic 20.0%
!!! TATCTAATATTTGTTAATGC+AGG - chr8_1:65384687-65384706 Msa1207650:intron 20.0%
!! ACAATTTCAACTTTCATTAT+AGG + chr8_1:65385108-65385127 None:intergenic 20.0%
!! AAGGAAGTAATCATATAATA+GGG + chr8_1:65384576-65384595 None:intergenic 20.0%
!!! TATCTAATATTTGTTAATGC+AGG - chr8_1:65384687-65384706 Msa1207650:intron 20.0%
!! ACAATTTCAACTTTCATTAT+AGG + chr8_1:65385108-65385127 None:intergenic 20.0%
! TCAATTGCAATCTTAATAAC+AGG + chr8_1:65384159-65384178 None:intergenic 25.0%
!! ATTTTCTGTATCTGTTAACA+TGG - chr8_1:65384375-65384394 Msa1207650:CDS 25.0%
! AGGAAGTAATCATATAATAG+GGG + chr8_1:65384575-65384594 None:intergenic 25.0%
! CAAGGAAGTAATCATATAAT+AGG + chr8_1:65384577-65384596 None:intergenic 25.0%
! TACATAAAACTGATGAAGAT+CGG + chr8_1:65384619-65384638 None:intergenic 25.0%
!!! ATGTGTATGTTTTTATGTGA+TGG - chr8_1:65384642-65384661 Msa1207650:intron 25.0%
! TATGTGTTCAATAAACAATC+AGG - chr8_1:65384778-65384797 Msa1207650:intron 25.0%
! ATTATAGGTTCAAGCATTAA+CGG + chr8_1:65385093-65385112 None:intergenic 25.0%
! TCAATTGCAATCTTAATAAC+AGG + chr8_1:65384159-65384178 None:intergenic 25.0%
!! ATTTTCTGTATCTGTTAACA+TGG - chr8_1:65384375-65384394 Msa1207650:CDS 25.0%
! AGGAAGTAATCATATAATAG+GGG + chr8_1:65384575-65384594 None:intergenic 25.0%
! CAAGGAAGTAATCATATAAT+AGG + chr8_1:65384577-65384596 None:intergenic 25.0%
! TACATAAAACTGATGAAGAT+CGG + chr8_1:65384619-65384638 None:intergenic 25.0%
!!! ATGTGTATGTTTTTATGTGA+TGG - chr8_1:65384642-65384661 Msa1207650:intron 25.0%
! TATGTGTTCAATAAACAATC+AGG - chr8_1:65384778-65384797 Msa1207650:intron 25.0%
! ATTATAGGTTCAAGCATTAA+CGG + chr8_1:65385093-65385112 None:intergenic 25.0%
ATGGATATTGTTACTCTTGT+TGG - chr8_1:65384054-65384073 Msa1207650:CDS 30.0%
CAATCTTAATAACAGGAACA+GGG + chr8_1:65384152-65384171 None:intergenic 30.0%
TCGTCTCAAAAGAGAATTTA+AGG - chr8_1:65384326-65384345 Msa1207650:CDS 30.0%
! CCTTACTTCTTGTTATGATT+TGG + chr8_1:65384451-65384470 None:intergenic 30.0%
CCAAATCATAACAAGAAGTA+AGG - chr8_1:65384448-65384467 Msa1207650:CDS 30.0%
TCATGAAAAAAATGCTTACG+AGG - chr8_1:65384491-65384510 Msa1207650:CDS 30.0%
ATAATCATCCTTGATCTCAA+GGG + chr8_1:65384528-65384547 None:intergenic 30.0%
AATAATCATCCTTGATCTCA+AGG + chr8_1:65384529-65384548 None:intergenic 30.0%
AAGAAAAAGGAATCATCTCA+AGG + chr8_1:65384595-65384614 None:intergenic 30.0%
! TTTTCCCCAAGTAAACTATA+GGG - chr8_1:65384726-65384745 Msa1207650:intron 30.0%
CAAATTTGTATCCACTACTT+GGG + chr8_1:65384852-65384871 None:intergenic 30.0%
TCAAATTTGTATCCACTACT+TGG + chr8_1:65384853-65384872 None:intergenic 30.0%
TTCCAGAAGAATTCATTACT+GGG - chr8_1:65384896-65384915 Msa1207650:intron 30.0%
! TTCATTACTGGGGTTTTTAA+AGG - chr8_1:65384907-65384926 Msa1207650:intron 30.0%
GAACATTTAGGAGATGTAAT+TGG - chr8_1:65385138-65385157 Msa1207650:CDS 30.0%
! TGTCACAAAAGCTATTGATT+TGG + chr8_1:65385185-65385204 None:intergenic 30.0%
ACAAGAGTAACAATATCCAT+TGG + chr8_1:65384054-65384073 None:intergenic 30.0%
ATGGATATTGTTACTCTTGT+TGG - chr8_1:65384054-65384073 Msa1207650:CDS 30.0%
CAATCTTAATAACAGGAACA+GGG + chr8_1:65384152-65384171 None:intergenic 30.0%
TCGTCTCAAAAGAGAATTTA+AGG - chr8_1:65384326-65384345 Msa1207650:CDS 30.0%
! CCTTACTTCTTGTTATGATT+TGG + chr8_1:65384451-65384470 None:intergenic 30.0%
CCAAATCATAACAAGAAGTA+AGG - chr8_1:65384448-65384467 Msa1207650:CDS 30.0%
TCATGAAAAAAATGCTTACG+AGG - chr8_1:65384491-65384510 Msa1207650:CDS 30.0%
ATAATCATCCTTGATCTCAA+GGG + chr8_1:65384528-65384547 None:intergenic 30.0%
AATAATCATCCTTGATCTCA+AGG + chr8_1:65384529-65384548 None:intergenic 30.0%
AAGAAAAAGGAATCATCTCA+AGG + chr8_1:65384595-65384614 None:intergenic 30.0%
! TTTTCCCCAAGTAAACTATA+GGG - chr8_1:65384726-65384745 Msa1207650:intron 30.0%
CAAATTTGTATCCACTACTT+GGG + chr8_1:65384852-65384871 None:intergenic 30.0%
TCAAATTTGTATCCACTACT+TGG + chr8_1:65384853-65384872 None:intergenic 30.0%
TTCCAGAAGAATTCATTACT+GGG - chr8_1:65384896-65384915 Msa1207650:intron 30.0%
! TTCATTACTGGGGTTTTTAA+AGG - chr8_1:65384907-65384926 Msa1207650:intron 30.0%
GAACATTTAGGAGATGTAAT+TGG - chr8_1:65385138-65385157 Msa1207650:CDS 30.0%
! TGTCACAAAAGCTATTGATT+TGG + chr8_1:65385185-65385204 None:intergenic 30.0%
GGTTTGAAAGATACTATAGC+CGG - chr8_1:65384075-65384094 Msa1207650:CDS 35.0%
GCAATCTTAATAACAGGAAC+AGG + chr8_1:65384153-65384172 None:intergenic 35.0%
!!! TCCATGTCAGCTTTAGTTTT+GGG + chr8_1:65384183-65384202 None:intergenic 35.0%
!!! TCTTTTGAGACGATCAACAA+TGG + chr8_1:65384319-65384338 None:intergenic 35.0%
GATGAAGATCGGAAAGAAAA+AGG + chr8_1:65384608-65384627 None:intergenic 35.0%
! GTTTTCCCCAAGTAAACTAT+AGG - chr8_1:65384725-65384744 Msa1207650:intron 35.0%
CTTTCCCTATAGTTTACTTG+GGG + chr8_1:65384733-65384752 None:intergenic 35.0%
GCTTTCCCTATAGTTTACTT+GGG + chr8_1:65384734-65384753 None:intergenic 35.0%
TGCTTTCCCTATAGTTTACT+TGG + chr8_1:65384735-65384754 None:intergenic 35.0%
GTGTTCAATAAACAATCAGG+TGG - chr8_1:65384781-65384800 Msa1207650:intron 35.0%
GTATGGTTACATCTGCAAAT+TGG + chr8_1:65384813-65384832 None:intergenic 35.0%
! AACCATACATTTTGAACCCA+TGG - chr8_1:65384825-65384844 Msa1207650:intron 35.0%
CTTCCAGAAGAATTCATTAC+TGG - chr8_1:65384895-65384914 Msa1207650:intron 35.0%
TCCAGAAGAATTCATTACTG+GGG - chr8_1:65384897-65384916 Msa1207650:intron 35.0%
!! TACTGGGGTTTTTAAAGGAT+TGG - chr8_1:65384912-65384931 Msa1207650:intron 35.0%
TCACATTTGAATCCACATCA+TGG + chr8_1:65385014-65385033 None:intergenic 35.0%
ATGATGTGGATTCAAATGTG+AGG - chr8_1:65385013-65385032 Msa1207650:CDS 35.0%
TGATGTGGATTCAAATGTGA+GGG - chr8_1:65385014-65385033 Msa1207650:CDS 35.0%
GTTACTCCTGAAGAACATTT+AGG - chr8_1:65385126-65385145 Msa1207650:CDS 35.0%
ACATCTCCTAAATGTTCTTC+AGG + chr8_1:65385135-65385154 None:intergenic 35.0%
GGTTTGAAAGATACTATAGC+CGG - chr8_1:65384075-65384094 Msa1207650:CDS 35.0%
GCAATCTTAATAACAGGAAC+AGG + chr8_1:65384153-65384172 None:intergenic 35.0%
!!! TCCATGTCAGCTTTAGTTTT+GGG + chr8_1:65384183-65384202 None:intergenic 35.0%
!!! TCTTTTGAGACGATCAACAA+TGG + chr8_1:65384319-65384338 None:intergenic 35.0%
GATGAAGATCGGAAAGAAAA+AGG + chr8_1:65384608-65384627 None:intergenic 35.0%
! GTTTTCCCCAAGTAAACTAT+AGG - chr8_1:65384725-65384744 Msa1207650:intron 35.0%
CTTTCCCTATAGTTTACTTG+GGG + chr8_1:65384733-65384752 None:intergenic 35.0%
GCTTTCCCTATAGTTTACTT+GGG + chr8_1:65384734-65384753 None:intergenic 35.0%
TGCTTTCCCTATAGTTTACT+TGG + chr8_1:65384735-65384754 None:intergenic 35.0%
GTGTTCAATAAACAATCAGG+TGG - chr8_1:65384781-65384800 Msa1207650:intron 35.0%
GTATGGTTACATCTGCAAAT+TGG + chr8_1:65384813-65384832 None:intergenic 35.0%
! AACCATACATTTTGAACCCA+TGG - chr8_1:65384825-65384844 Msa1207650:intron 35.0%
CTTCCAGAAGAATTCATTAC+TGG - chr8_1:65384895-65384914 Msa1207650:intron 35.0%
TCCAGAAGAATTCATTACTG+GGG - chr8_1:65384897-65384916 Msa1207650:intron 35.0%
!! TACTGGGGTTTTTAAAGGAT+TGG - chr8_1:65384912-65384931 Msa1207650:intron 35.0%
TCACATTTGAATCCACATCA+TGG + chr8_1:65385014-65385033 None:intergenic 35.0%
ATGATGTGGATTCAAATGTG+AGG - chr8_1:65385013-65385032 Msa1207650:CDS 35.0%
TGATGTGGATTCAAATGTGA+GGG - chr8_1:65385014-65385033 Msa1207650:CDS 35.0%
GTTACTCCTGAAGAACATTT+AGG - chr8_1:65385126-65385145 Msa1207650:CDS 35.0%
ACATCTCCTAAATGTTCTTC+AGG + chr8_1:65385135-65385154 None:intergenic 35.0%
ACCCAAAACTAAAGCTGACA+TGG - chr8_1:65384179-65384198 Msa1207650:CDS 40.0%
!! CTCCATGTCAGCTTTAGTTT+TGG + chr8_1:65384184-65384203 None:intergenic 40.0%
TAAAGCTGACATGGAGAAGA+TGG - chr8_1:65384188-65384207 Msa1207650:CDS 40.0%
TGGTTTAATCAAGCTTGCAG+AGG - chr8_1:65384215-65384234 Msa1207650:CDS 40.0%
CCTCTTTATCTTGGGATAAG+CGG + chr8_1:65384254-65384273 None:intergenic 40.0%
TATCCCAAGATAAAGAGGAC+CGG - chr8_1:65384256-65384275 Msa1207650:CDS 40.0%
ATGCAGGTAGAAGCTAATGT+TGG - chr8_1:65384703-65384722 Msa1207650:intron 40.0%
ATACCTCACTTCTGTGACTT+CGG + chr8_1:65384761-65384780 None:intergenic 40.0%
TGGTTACATCTGCAAATTGG+CGG + chr8_1:65384810-65384829 None:intergenic 40.0%
GTCCATGGGTTCAAAATGTA+TGG + chr8_1:65384830-65384849 None:intergenic 40.0%
ACCCCAGTAATGAATTCTTC+TGG + chr8_1:65384901-65384920 None:intergenic 40.0%
! TTGGAAAAGTGCATGAGCAA+TGG - chr8_1:65384931-65384950 Msa1207650:CDS 40.0%
GGATGGTAATTACCATGATG+TGG - chr8_1:65384999-65385018 Msa1207650:CDS 40.0%
!! AAATGTGAGGGTATTCCAGT+TGG - chr8_1:65385026-65385045 Msa1207650:CDS 40.0%
AGGTTCAAGCATTAACGGTT+TGG + chr8_1:65385088-65385107 None:intergenic 40.0%
! GGAGATGTAATTGGTGATCT+CGG - chr8_1:65385147-65385166 Msa1207650:CDS 40.0%
ACCCAAAACTAAAGCTGACA+TGG - chr8_1:65384179-65384198 Msa1207650:CDS 40.0%
!! CTCCATGTCAGCTTTAGTTT+TGG + chr8_1:65384184-65384203 None:intergenic 40.0%
TAAAGCTGACATGGAGAAGA+TGG - chr8_1:65384188-65384207 Msa1207650:CDS 40.0%
TGGTTTAATCAAGCTTGCAG+AGG - chr8_1:65384215-65384234 Msa1207650:CDS 40.0%
CCTCTTTATCTTGGGATAAG+CGG + chr8_1:65384254-65384273 None:intergenic 40.0%
TATCCCAAGATAAAGAGGAC+CGG - chr8_1:65384256-65384275 Msa1207650:CDS 40.0%
ATGCAGGTAGAAGCTAATGT+TGG - chr8_1:65384703-65384722 Msa1207650:intron 40.0%
ATACCTCACTTCTGTGACTT+CGG + chr8_1:65384761-65384780 None:intergenic 40.0%
TGGTTACATCTGCAAATTGG+CGG + chr8_1:65384810-65384829 None:intergenic 40.0%
GTCCATGGGTTCAAAATGTA+TGG + chr8_1:65384830-65384849 None:intergenic 40.0%
ACCCCAGTAATGAATTCTTC+TGG + chr8_1:65384901-65384920 None:intergenic 40.0%
! TTGGAAAAGTGCATGAGCAA+TGG - chr8_1:65384931-65384950 Msa1207650:CDS 40.0%
GGATGGTAATTACCATGATG+TGG - chr8_1:65384999-65385018 Msa1207650:CDS 40.0%
!! AAATGTGAGGGTATTCCAGT+TGG - chr8_1:65385026-65385045 Msa1207650:CDS 40.0%
AGGTTCAAGCATTAACGGTT+TGG + chr8_1:65385088-65385107 None:intergenic 40.0%
! GGAGATGTAATTGGTGATCT+CGG - chr8_1:65385147-65385166 Msa1207650:CDS 40.0%
TCCATTCGTGCTTGATCAGA+TGG - chr8_1:65384122-65384141 Msa1207650:CDS 45.0%
TCCATCTGATCAAGCACGAA+TGG + chr8_1:65384126-65384145 None:intergenic 45.0%
CTTGGGATAAGCGGAAAGAA+GGG + chr8_1:65384245-65384264 None:intergenic 45.0%
TCTTGGGATAAGCGGAAAGA+AGG + chr8_1:65384246-65384265 None:intergenic 45.0%
CCGCTTATCCCAAGATAAAG+AGG - chr8_1:65384251-65384270 Msa1207650:CDS 45.0%
GACTATGACCCTTGAGATCA+AGG - chr8_1:65384517-65384536 Msa1207650:CDS 45.0%
TTTCCGAAGTCACAGAAGTG+AGG - chr8_1:65384755-65384774 Msa1207650:intron 45.0%
TATCCACTACTTGGGTCCAT+GGG + chr8_1:65384844-65384863 None:intergenic 45.0%
ATGAGCAATGGTGTTCTAGC+CGG - chr8_1:65384943-65384962 Msa1207650:CDS 45.0%
! TGGCAGCAAGAGAAGCTTTT+AGG - chr8_1:65385046-65385065 Msa1207650:CDS 45.0%
! GGCAGCAAGAGAAGCTTTTA+GGG - chr8_1:65385047-65385066 Msa1207650:CDS 45.0%
!! GCAAGAGAAGCTTTTAGGGA+AGG - chr8_1:65385051-65385070 Msa1207650:CDS 45.0%
TCCATTCGTGCTTGATCAGA+TGG - chr8_1:65384122-65384141 Msa1207650:CDS 45.0%
TCCATCTGATCAAGCACGAA+TGG + chr8_1:65384126-65384145 None:intergenic 45.0%
CTTGGGATAAGCGGAAAGAA+GGG + chr8_1:65384245-65384264 None:intergenic 45.0%
TCTTGGGATAAGCGGAAAGA+AGG + chr8_1:65384246-65384265 None:intergenic 45.0%
CCGCTTATCCCAAGATAAAG+AGG - chr8_1:65384251-65384270 Msa1207650:CDS 45.0%
GACTATGACCCTTGAGATCA+AGG - chr8_1:65384517-65384536 Msa1207650:CDS 45.0%
TTTCCGAAGTCACAGAAGTG+AGG - chr8_1:65384755-65384774 Msa1207650:intron 45.0%
TATCCACTACTTGGGTCCAT+GGG + chr8_1:65384844-65384863 None:intergenic 45.0%
ATGAGCAATGGTGTTCTAGC+CGG - chr8_1:65384943-65384962 Msa1207650:CDS 45.0%
! TGGCAGCAAGAGAAGCTTTT+AGG - chr8_1:65385046-65385065 Msa1207650:CDS 45.0%
! GGCAGCAAGAGAAGCTTTTA+GGG - chr8_1:65385047-65385066 Msa1207650:CDS 45.0%
!! GCAAGAGAAGCTTTTAGGGA+AGG - chr8_1:65385051-65385070 Msa1207650:CDS 45.0%
TCAAGCACGAATGGACCCTT+GGG + chr8_1:65384117-65384136 None:intergenic 50.0%
ATCAAGCACGAATGGACCCT+TGG + chr8_1:65384118-65384137 None:intergenic 50.0%
GACATGGAGAAGATGGAAGC+TGG - chr8_1:65384195-65384214 Msa1207650:CDS 50.0%
CGTCCGGTCCTCTTTATCTT+GGG + chr8_1:65384262-65384281 None:intergenic 50.0%
TCGTCCGGTCCTCTTTATCT+TGG + chr8_1:65384263-65384282 None:intergenic 50.0%
CCGTTCCTTGAATGATCGTC+CGG + chr8_1:65384278-65384297 None:intergenic 50.0%
CCGGACGATCATTCAAGGAA+CGG - chr8_1:65384275-65384294 Msa1207650:CDS 50.0%
CGGACGATCATTCAAGGAAC+GGG - chr8_1:65384276-65384295 Msa1207650:CDS 50.0%
GTATCCACTACTTGGGTCCA+TGG + chr8_1:65384845-65384864 None:intergenic 50.0%
TACACCAACAACCGGAAAGC+CGG + chr8_1:65384965-65384984 None:intergenic 50.0%
AAGCTTCTCTTGCTGCCAAC+TGG + chr8_1:65385044-65385063 None:intergenic 50.0%
GGTGATCTCGGCAGAAAAAG+AGG - chr8_1:65385159-65385178 Msa1207650:CDS 50.0%
TCAAGCACGAATGGACCCTT+GGG + chr8_1:65384117-65384136 None:intergenic 50.0%
ATCAAGCACGAATGGACCCT+TGG + chr8_1:65384118-65384137 None:intergenic 50.0%
GACATGGAGAAGATGGAAGC+TGG - chr8_1:65384195-65384214 Msa1207650:CDS 50.0%
CGTCCGGTCCTCTTTATCTT+GGG + chr8_1:65384262-65384281 None:intergenic 50.0%
TCGTCCGGTCCTCTTTATCT+TGG + chr8_1:65384263-65384282 None:intergenic 50.0%
CCGTTCCTTGAATGATCGTC+CGG + chr8_1:65384278-65384297 None:intergenic 50.0%
CCGGACGATCATTCAAGGAA+CGG - chr8_1:65384275-65384294 Msa1207650:CDS 50.0%
CGGACGATCATTCAAGGAAC+GGG - chr8_1:65384276-65384295 Msa1207650:CDS 50.0%
GTATCCACTACTTGGGTCCA+TGG + chr8_1:65384845-65384864 None:intergenic 50.0%
TACACCAACAACCGGAAAGC+CGG + chr8_1:65384965-65384984 None:intergenic 50.0%
AAGCTTCTCTTGCTGCCAAC+TGG + chr8_1:65385044-65385063 None:intergenic 50.0%
GGTGATCTCGGCAGAAAAAG+AGG - chr8_1:65385159-65385178 Msa1207650:CDS 50.0%
TGAGACGTTGTGTGACCCCA+AGG - chr8_1:65384098-65384117 Msa1207650:CDS 55.0%
GAGACGTTGTGTGACCCCAA+GGG - chr8_1:65384099-65384118 Msa1207650:CDS 55.0%
CAAGCACGAATGGACCCTTG+GGG + chr8_1:65384116-65384135 None:intergenic 55.0%
GAGGACCGGACGATCATTCA+AGG - chr8_1:65384270-65384289 Msa1207650:CDS 55.0%
GAACCCATGGACCCAAGTAG+TGG - chr8_1:65384838-65384857 Msa1207650:intron 55.0%
! TGGTGTTCTAGCCGGCTTTC+CGG - chr8_1:65384951-65384970 Msa1207650:CDS 55.0%
ACTGCGCGTACACCAACAAC+CGG + chr8_1:65384973-65384992 None:intergenic 55.0%
TGGTGTACGCGCAGTACTTG+TGG - chr8_1:65384978-65384997 Msa1207650:CDS 55.0%
GTACGCGCAGTACTTGTGGA+TGG - chr8_1:65384982-65385001 Msa1207650:CDS 55.0%
TGAGACGTTGTGTGACCCCA+AGG - chr8_1:65384098-65384117 Msa1207650:CDS 55.0%
GAGACGTTGTGTGACCCCAA+GGG - chr8_1:65384099-65384118 Msa1207650:CDS 55.0%
CAAGCACGAATGGACCCTTG+GGG + chr8_1:65384116-65384135 None:intergenic 55.0%
GAGGACCGGACGATCATTCA+AGG - chr8_1:65384270-65384289 Msa1207650:CDS 55.0%
GAACCCATGGACCCAAGTAG+TGG - chr8_1:65384838-65384857 Msa1207650:intron 55.0%
! TGGTGTTCTAGCCGGCTTTC+CGG - chr8_1:65384951-65384970 Msa1207650:CDS 55.0%
ACTGCGCGTACACCAACAAC+CGG + chr8_1:65384973-65384992 None:intergenic 55.0%
TGGTGTACGCGCAGTACTTG+TGG - chr8_1:65384978-65384997 Msa1207650:CDS 55.0%
GTACGCGCAGTACTTGTGGA+TGG - chr8_1:65384982-65385001 Msa1207650:CDS 55.0%
GGGGTCACACAACGTCTCAC+CGG + chr8_1:65384097-65384116 None:intergenic 60.0%
! CTAGCCGGCTTTCCGGTTGT+TGG - chr8_1:65384958-65384977 Msa1207650:CDS 60.0%
GGGGTCACACAACGTCTCAC+CGG + chr8_1:65384097-65384116 None:intergenic 60.0%
! CTAGCCGGCTTTCCGGTTGT+TGG - chr8_1:65384958-65384977 Msa1207650:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 65384054 65385209 65384054 ID=Msa1207650;Name=Msa1207650
chr8_1 mRNA 65384054 65385209 65384054 ID=Msa1207650-mRNA-1;Parent=Msa1207650;Name=Msa1207650-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|1|0|1|1|1|2|0|265
chr8_1 exon 65384916 65385209 65384916 ID=Msa1207650-mRNA-1:exon:21471;Parent=Msa1207650-mRNA-1
chr8_1 exon 65384054 65384554 65384054 ID=Msa1207650-mRNA-1:exon:21470;Parent=Msa1207650-mRNA-1
chr8_1 CDS 65384916 65385209 65384916 ID=Msa1207650-mRNA-1:cds;Parent=Msa1207650-mRNA-1
chr8_1 CDS 65384054 65384554 65384054 ID=Msa1207650-mRNA-1:cds;Parent=Msa1207650-mRNA-1
Gene Sequence

>Msa1207650

ATGGATATTGTTACTCTTGTTGGTTTGAAAGATACTATAGCCGGTGAGACGTTGTGTGACCCCAAGGGTCCATTCGTGCTTGATCAGATGGACTTCCCTGTTCCTGTTATTAAGATTGCAATTGAACCCAAAACTAAAGCTGACATGGAGAAGATGGAAGCTGGTTTAATCAAGCTTGCAGAGGAAGACCCTTCTTTCCGCTTATCCCAAGATAAAGAGGACCGGACGATCATTCAAGGAACGGGAGAATTGCATCTTGAAACCATTGTTGATCGTCTCAAAAGAGAATTTAAGGTAGAAGCTAATGTTGGTTTTCCCCAAGTAAACTATAGGGAAAGCATTTCCGAAGTCACAGAAGTGAGGTATGTGTTCAATAAACAATCAGGTGGACACCGCCAATTTGCAGATGTAACCATACATTTTGAACCCATGGACCCAAGTAGTGGATACAAATTTGAGAATAAAATCAAAGAAGAAGCACTTCCAGAAGAATTCATTACTGGGGTTTTTAAAGGATTGGAAAAGTGCATGAGCAATGGTGTTCTAGCCGGCTTTCCGGTTGTTGGTGTACGCGCAGTACTTGTGGATGGTAATTACCATGATGTGGATTCAAATGTGAGGGTATTCCAGTTGGCAGCAAGAGAAGCTTTTAGGGAAGGAATGAGAAAAGCCAAACCGTTAATGCTTGAACCTATAATGAAAGTTGAAATTGTTACTCCTGAAGAACATTTAGGAGATGTAATTGGTGATCTCGGCAGAAAAAGAGGCCAAATCAATAGCTTTTGTGACAAACCA

Protein sequence

>Msa1207650

MDIVTLVGLKDTIAGETLCDPKGPFVLDQMDFPVPVIKIAIEPKTKADMEKMEAGLIKLAEEDPSFRLSQDKEDRTIIQGTGELHLETIVDRLKREFKVEANVGFPQVNYRESISEVTEVRYVFNKQSGGHRQFADVTIHFEPMDPSSGYKFENKIKEEALPEEFITGVFKGLEKCMSNGVLAGFPVVGVRAVLVDGNYHDVDSNVRVFQLAAREAFREGMRKAKPLMLEPIMKVEIVTPEEHLGDVIGDLGRKRGQINSFCDKP