AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1367920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1367920 MtrunA17_Chr7g0236891 96.407 167 6 0 1 167 1 167 6.22e-119 333
Msa1367920 MtrunA17_Chr3g0094861 47.260 146 71 1 16 161 169 308 2.80e-33 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1367920 AT3G17609.2 60.000 130 47 2 39 167 22 147 6.23e-44 142
Msa1367920 AT3G17609.3 61.157 121 42 2 48 167 2 118 4.06e-41 134
Msa1367920 AT3G17609.1 74.444 90 22 1 79 167 44 133 4.40e-40 132
Msa1367920 AT3G17609.4 74.444 90 22 1 79 167 43 132 4.56e-40 132
Msa1367920 AT5G11260.1 48.175 137 54 3 31 161 26 151 4.54e-33 115
Msa1367920 AT5G11260.2 48.120 133 52 3 31 157 26 147 1.74e-30 109

Find 71 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAATTGTGTAATTGATTA+AGG 0.121343 tig0018573:-11211 Msa1367920:three_prime_UTR
ATATAAGGTTCTTCTAAATT+AGG 0.169445 tig0018573:-11371 Msa1367920:three_prime_UTR
CGGTTACATTGCTTTGATTA+TGG 0.188466 tig0018573:+12171 None:intergenic
TGAGATACGTTCTTCTAAAT+TGG 0.194375 tig0018573:+11598 None:intergenic
CTTCATCTTCATCTTCTTCA+TGG 0.213050 tig0018573:-13297 Msa1367920:CDS
TCTTCCACGGCGGCGCTTGC+CGG 0.245919 tig0018573:+12124 None:intergenic
CTTCCACGGCGGCGCTTGCC+GGG 0.275869 tig0018573:+12125 None:intergenic
TTTCTGAACCAAAACTCTTT+AGG 0.294887 tig0018573:-13534 Msa1367920:five_prime_UTR
CAAATAGGTTGCTAAGGAAT+AGG 0.306771 tig0018573:-11706 Msa1367920:intron
TGATGGGGCCTAAAGAGTTT+TGG 0.346977 tig0018573:+13526 None:intergenic
TATAAGGTTCTTCTAAATTA+GGG 0.349631 tig0018573:-11370 Msa1367920:three_prime_UTR
CCTTCATTGCTCATCAACTT+TGG 0.354625 tig0018573:+11404 None:intergenic
CTTCATTGCTCATCAACTTT+GGG 0.354751 tig0018573:+11405 None:intergenic
TGCTCCCGGGGCACTGGTTA+AGG 0.356514 tig0018573:-11174 Msa1367920:three_prime_UTR
TAAATTGTGTAATTGATTAA+GGG 0.359378 tig0018573:-11210 Msa1367920:three_prime_UTR
GAAGGTTAGACAGGGATATA+AGG 0.362469 tig0018573:-11386 Msa1367920:three_prime_UTR
CATTGTGTACCTTCCACATC+TGG 0.376399 tig0018573:+12233 None:intergenic
TACTGGTGTTCATAATGAAT+TGG 0.380711 tig0018573:+11274 None:intergenic
CTTCTAAATTAGGGCATTGT+GGG 0.383047 tig0018573:-11361 Msa1367920:three_prime_UTR
TTCCTTCATCTCAGTATCAT+TGG 0.395557 tig0018573:+13339 None:intergenic
TGATTAAGGGTTGTGTTAAC+CGG 0.397964 tig0018573:-11197 Msa1367920:three_prime_UTR
TCGGAGCATGGCGTTCTCAT+TGG 0.400151 tig0018573:+11568 None:intergenic
GTTGTGTTAACCGGTGCTCC+CGG 0.404620 tig0018573:-11188 Msa1367920:three_prime_UTR
ATGAAGGAAGCTGCAACAAC+TGG 0.409191 tig0018573:-13325 Msa1367920:CDS
TTTGATTTGTTAACTCAGAA+TGG 0.409238 tig0018573:+12201 None:intergenic
CGTCTATGTTCCTTGTCTGC+AGG 0.409298 tig0018573:+12098 None:intergenic
CCTATGCCTCCACATAGATT+TGG 0.415132 tig0018573:-13262 Msa1367920:intron
AAATAGGTTGCTAAGGAATA+GGG 0.428080 tig0018573:-11705 Msa1367920:intron
AACCGGTGCTCCCGGGGCAC+TGG 0.433020 tig0018573:-11180 Msa1367920:three_prime_UTR
TGTTACTTGAAATTTCTTTG+AGG 0.443146 tig0018573:-13411 Msa1367920:five_prime_UTR
TTGTGTTAACCGGTGCTCCC+GGG 0.453179 tig0018573:-11187 Msa1367920:three_prime_UTR
TAAAACAGAGAAGAAAGGTT+TGG 0.458287 tig0018573:-13580 Msa1367920:five_prime_UTR
CTTCATCTTCTTCATGGAGT+AGG 0.466765 tig0018573:-13291 Msa1367920:CDS
CAACTTCAAGCAGGCTTCCC+CGG 0.470731 tig0018573:-12143 Msa1367920:CDS
ATGAGCAATGAAGGTTAGAC+AGG 0.476526 tig0018573:-11395 Msa1367920:exon
GTCTATGTTCCTTGTCTGCA+GGG 0.478530 tig0018573:+12099 None:intergenic
AACCAGTGCCCCGGGAGCAC+CGG 0.490537 tig0018573:+11178 None:intergenic
GTTAATGCACTTGCAATGTT+GGG 0.495633 tig0018573:+13459 None:intergenic
AGCCAATGATACTGAGATGA+AGG 0.496590 tig0018573:-13341 Msa1367920:CDS
TGTCTGCAGGGTTTCTTCCA+CGG 0.500164 tig0018573:+12111 None:intergenic
CCAAAGTTGATGAGCAATGA+AGG 0.501104 tig0018573:-11404 Msa1367920:exon
TTATGTTACCTTTCGGAGCA+TGG 0.517776 tig0018573:+11556 None:intergenic
TCTTCTAAATTAGGGCATTG+TGG 0.522870 tig0018573:-11362 Msa1367920:three_prime_UTR
TTCCACGGCGGCGCTTGCCG+GGG 0.522944 tig0018573:+12126 None:intergenic
ATTGTCTTTGAAAGAGTGAT+GGG 0.523947 tig0018573:+13510 None:intergenic
CCAAATCTATGTGGAGGCAT+AGG 0.526031 tig0018573:+13262 None:intergenic
TGTTAATGCACTTGCAATGT+TGG 0.535125 tig0018573:+13458 None:intergenic
AGGAACATAGACGTCTCAAA+AGG 0.535376 tig0018573:-12088 Msa1367920:intron
CATTGTCTTTGAAAGAGTGA+TGG 0.546775 tig0018573:+13509 None:intergenic
GTGTTACAAATAGGTTGCTA+AGG 0.552163 tig0018573:-11712 Msa1367920:intron
GATACCTTAACCAGTGCCCC+GGG 0.552240 tig0018573:+11170 None:intergenic
TGGAAGAAACCCTGCAGACA+AGG 0.552255 tig0018573:-12108 Msa1367920:CDS
TGTGTTAACCGGTGCTCCCG+GGG 0.554531 tig0018573:-11186 Msa1367920:three_prime_UTR
AGATACCTTAACCAGTGCCC+CGG 0.559775 tig0018573:+11169 None:intergenic
ACCGATGCTCAACTTCAAGC+AGG 0.560214 tig0018573:-12152 Msa1367920:CDS
CATGAAGAAGATGAAGATGA+AGG 0.570746 tig0018573:+13298 None:intergenic
GTTGCTAAGGAATAGGGTCT+CGG 0.571634 tig0018573:-11699 Msa1367920:CDS
AATCTATGTGGAGGCATAGG+AGG 0.581180 tig0018573:+13265 None:intergenic
ACACGTAAAACAGAGAAGAA+AGG 0.585758 tig0018573:-13585 Msa1367920:five_prime_UTR
GCCTGCTTGAAGTTGAGCAT+CGG 0.588947 tig0018573:+12151 None:intergenic
TTCCCCGGCAAGCGCCGCCG+TGG 0.608180 tig0018573:-12128 Msa1367920:CDS
TGAGAACGCCATGCTCCGAA+AGG 0.615500 tig0018573:-11564 Msa1367920:intron
TTCTAAATTAGGGCATTGTG+GGG 0.623760 tig0018573:-11360 Msa1367920:three_prime_UTR
CACTTACCAAATCTATGTGG+AGG 0.634191 tig0018573:+13256 None:intergenic
TCTGTTCGAAGTTCCAGATG+TGG 0.639704 tig0018573:-12246 Msa1367920:CDS
TGACACTTACCAAATCTATG+TGG 0.647225 tig0018573:+13253 None:intergenic
CTGCAGGGTTTCTTCCACGG+CGG 0.647406 tig0018573:+12114 None:intergenic
TTCGAAGTTCCAGATGTGGA+AGG 0.651950 tig0018573:-12242 Msa1367920:CDS
ATAATAGTGGTACACATGTG+AGG 0.686831 tig0018573:+11325 None:intergenic
TTGTCTTTGAAAGAGTGATG+GGG 0.687323 tig0018573:+13511 None:intergenic
TGAGCAATGAAGGTTAGACA+GGG 0.704210 tig0018573:-11394 Msa1367920:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTTAAATAAAAATTTAAC+GGG + tig0018573:11878-11897 None:intergenic 10.0%
!! ATTATAATTGTAATATGTAT+CGG + tig0018573:12830-12849 None:intergenic 10.0%
!! AAGAATATTAAGTATATTGT+TGG - tig0018573:11728-11747 Msa1367920:intron 15.0%
!! GGTATATATATAATATAAGT+TGG - tig0018573:11792-11811 Msa1367920:intron 15.0%
!! ATGTCAAATTAAAATTTGAA+GGG + tig0018573:12335-12354 None:intergenic 15.0%
!! AATGTCAAATTAAAATTTGA+AGG + tig0018573:12336-12355 None:intergenic 15.0%
!! TTAAATTGTGTAATTGATTA+AGG - tig0018573:13508-13527 Msa1367920:five_prime_UTR 15.0%
!! TAAATTGTGTAATTGATTAA+GGG - tig0018573:13509-13528 Msa1367920:five_prime_UTR 15.0%
!!! ACAAGTTGTTTTTAAATGAT+CGG + tig0018573:11757-11776 None:intergenic 20.0%
!! TCAAATTGTTGATGTAAAAA+CGG + tig0018573:11953-11972 None:intergenic 20.0%
!! TCAAAATTTGCATTGAATTT+CGG - tig0018573:12093-12112 Msa1367920:CDS 20.0%
!! AACTACATACAATTCAAATT+TGG - tig0018573:12169-12188 Msa1367920:CDS 20.0%
!! AATGCAAAATTGTTACTATT+AGG - tig0018573:12274-12293 Msa1367920:intron 20.0%
!!! TAATATGGACTAAATTGAAT+TGG + tig0018573:12364-12383 None:intergenic 20.0%
!! AAAACAAGTCAAGTTTAATA+TGG + tig0018573:12379-12398 None:intergenic 20.0%
!! ATATAAGGTTCTTCTAAATT+AGG - tig0018573:13348-13367 Msa1367920:CDS 20.0%
!! TATAAGGTTCTTCTAAATTA+GGG - tig0018573:13349-13368 Msa1367920:CDS 20.0%
!!! TTTTTGGGAAATAATAATAC+TGG + tig0018573:13465-13484 None:intergenic 20.0%
!!! ATGTAAACTATCAGTTTTTT+GGG + tig0018573:13480-13499 None:intergenic 20.0%
!!! AATGTAAACTATCAGTTTTT+TGG + tig0018573:13481-13500 None:intergenic 20.0%
!! TGTTACTTGAAATTTCTTTG+AGG - tig0018573:11308-11327 Msa1367920:three_prime_UTR 25.0%
!! CATATTTTATCCTCAAGTTA+AGG - tig0018573:11539-11558 Msa1367920:intron 25.0%
!! AAATAAAAGACCTTAACTTG+AGG + tig0018573:11552-11571 None:intergenic 25.0%
! TATGAAGAATCTTGTAAGTT+TGG + tig0018573:11652-11671 None:intergenic 25.0%
! ACTTGTTTCATGAAAAGTAA+AGG - tig0018573:11771-11790 Msa1367920:intron 25.0%
!!! ATATAAGTTGGTCCATATTA+AGG - tig0018573:11804-11823 Msa1367920:intron 25.0%
!!! TATAAGTTGGTCCATATTAA+GGG - tig0018573:11805-11824 Msa1367920:intron 25.0%
! TATGCGTGTGTATATTATAA+GGG + tig0018573:11832-11851 None:intergenic 25.0%
! ATATGCGTGTGTATATTATA+AGG + tig0018573:11833-11852 None:intergenic 25.0%
! TACACACGCATATATTAAAT+TGG - tig0018573:11840-11859 Msa1367920:intron 25.0%
! AACTTTGTGATATGATATTG+TGG + tig0018573:11990-12009 None:intergenic 25.0%
!!! TTTGATTTGTTAACTCAGAA+TGG + tig0018573:12521-12540 None:intergenic 25.0%
!! AAATGACTTGTGTTACAAAT+AGG - tig0018573:12998-13017 Msa1367920:intron 25.0%
! ATAACATCATGTTGATCAAA+TGG - tig0018573:13244-13263 Msa1367920:intron 25.0%
! TCAAATGGAAATTTATTCGA+TGG - tig0018573:13259-13278 Msa1367920:intron 25.0%
TAAAACAGAGAAGAAAGGTT+TGG - tig0018573:11139-11158 Msa1367920:three_prime_UTR 30.0%
TTTCTGAACCAAAACTCTTT+AGG - tig0018573:11185-11204 Msa1367920:three_prime_UTR 30.0%
! ATTGTCTTTGAAAGAGTGAT+GGG + tig0018573:11212-11231 None:intergenic 30.0%
!! ATAAGTTGGTCCATATTAAG+GGG - tig0018573:11806-11825 Msa1367920:intron 30.0%
ATGATTATCGATCATTGTGA+AGG + tig0018573:12019-12038 None:intergenic 30.0%
ACATTAACATGTGCTAACAT+TGG + tig0018573:12195-12214 None:intergenic 30.0%
AATAGTGACTATAGAGTGTA+AGG + tig0018573:12691-12710 None:intergenic 30.0%
GTCTGACTTTACTTATCTTT+CGG - tig0018573:12943-12962 Msa1367920:intron 30.0%
AAATAGGTTGCTAAGGAATA+GGG - tig0018573:13014-13033 Msa1367920:intron 30.0%
!!! GTACACTTTTTTTCTTTCAC+GGG + tig0018573:13055-13074 None:intergenic 30.0%
!!! CGTACACTTTTTTTCTTTCA+CGG + tig0018573:13056-13075 None:intergenic 30.0%
TGAGATACGTTCTTCTAAAT+TGG + tig0018573:13124-13143 None:intergenic 30.0%
GTTCAGATTATGTTACCTTT+CGG + tig0018573:13173-13192 None:intergenic 30.0%
TACTGGTGTTCATAATGAAT+TGG + tig0018573:13448-13467 None:intergenic 30.0%
! CTGGTTAAGGTATCTAAAAA+AGG - tig0018573:13558-13577 Msa1367920:five_prime_UTR 30.0%
ACACGTAAAACAGAGAAGAA+AGG - tig0018573:11134-11153 Msa1367920:three_prime_UTR 35.0%
! TTGTCTTTGAAAGAGTGATG+GGG + tig0018573:11211-11230 None:intergenic 35.0%
! CATTGTCTTTGAAAGAGTGA+TGG + tig0018573:11213-11232 None:intergenic 35.0%
GTTAATGCACTTGCAATGTT+GGG + tig0018573:11263-11282 None:intergenic 35.0%
TGTTAATGCACTTGCAATGT+TGG + tig0018573:11264-11283 None:intergenic 35.0%
TTCCTTCATCTCAGTATCAT+TGG + tig0018573:11383-11402 None:intergenic 35.0%
CATGAAGAAGATGAAGATGA+AGG + tig0018573:11424-11443 None:intergenic 35.0%
CTTCATCTTCATCTTCTTCA+TGG - tig0018573:11422-11441 Msa1367920:CDS 35.0%
TGACACTTACCAAATCTATG+TGG + tig0018573:11469-11488 None:intergenic 35.0%
TATTGATAGGCTCTTGACTT+AGG + tig0018573:11595-11614 None:intergenic 35.0%
ATTATAAGGGCCCCTTAATA+TGG + tig0018573:11819-11838 None:intergenic 35.0%
ATTATCGATCATTGTGAAGG+TGG + tig0018573:12016-12035 None:intergenic 35.0%
CGGTTACATTGCTTTGATTA+TGG + tig0018573:12551-12570 None:intergenic 35.0%
ATAGACGTCTCAAAAGGTAA+GGG - tig0018573:12637-12656 Msa1367920:intron 35.0%
CTCAAACGATTGTTGAACTT+CGG - tig0018573:12878-12897 Msa1367920:intron 35.0%
GTGTTACAAATAGGTTGCTA+AGG - tig0018573:13007-13026 Msa1367920:intron 35.0%
CAAATAGGTTGCTAAGGAAT+AGG - tig0018573:13013-13032 Msa1367920:intron 35.0%
!! TTCGATGGTTTTACTTGTAC+AGG - tig0018573:13274-13293 Msa1367920:CDS 35.0%
CTTCATTGCTCATCAACTTT+GGG + tig0018573:13317-13336 None:intergenic 35.0%
!! TCTTCTAAATTAGGGCATTG+TGG - tig0018573:13357-13376 Msa1367920:CDS 35.0%
!! CTTCTAAATTAGGGCATTGT+GGG - tig0018573:13358-13377 Msa1367920:CDS 35.0%
!! TTCTAAATTAGGGCATTGTG+GGG - tig0018573:13359-13378 Msa1367920:exon 35.0%
ATAATAGTGGTACACATGTG+AGG + tig0018573:13397-13416 None:intergenic 35.0%
TGATTAAGGGTTGTGTTAAC+CGG - tig0018573:13522-13541 Msa1367920:five_prime_UTR 35.0%
AGCCAATGATACTGAGATGA+AGG - tig0018573:11378-11397 Msa1367920:three_prime_UTR 40.0%
CTTCATCTTCTTCATGGAGT+AGG - tig0018573:11428-11447 Msa1367920:intron 40.0%
CACTTACCAAATCTATGTGG+AGG + tig0018573:11466-11485 None:intergenic 40.0%
AGGAACATAGACGTCTCAAA+AGG - tig0018573:12631-12650 Msa1367920:intron 40.0%
CATAGACGTCTCAAAAGGTA+AGG - tig0018573:12636-12655 Msa1367920:intron 40.0%
!! TTTTCTTTCACGGGCTTGTT+GGG + tig0018573:13046-13065 None:intergenic 40.0%
! TTTTTCTTTCACGGGCTTGT+TGG + tig0018573:13047-13066 None:intergenic 40.0%
TTATGTTACCTTTCGGAGCA+TGG + tig0018573:13166-13185 None:intergenic 40.0%
CCTTCATTGCTCATCAACTT+TGG + tig0018573:13318-13337 None:intergenic 40.0%
!! CCAAAGTTGATGAGCAATGA+AGG - tig0018573:13315-13334 Msa1367920:CDS 40.0%
ATGAGCAATGAAGGTTAGAC+AGG - tig0018573:13324-13343 Msa1367920:CDS 40.0%
TGAGCAATGAAGGTTAGACA+GGG - tig0018573:13325-13344 Msa1367920:CDS 40.0%
GAAGGTTAGACAGGGATATA+AGG - tig0018573:13333-13352 Msa1367920:CDS 40.0%
! TGATGGGGCCTAAAGAGTTT+TGG + tig0018573:11196-11215 None:intergenic 45.0%
ATGAAGGAAGCTGCAACAAC+TGG - tig0018573:11394-11413 Msa1367920:exon 45.0%
! AATCTATGTGGAGGCATAGG+AGG + tig0018573:11457-11476 None:intergenic 45.0%
! CCAAATCTATGTGGAGGCAT+AGG + tig0018573:11460-11479 None:intergenic 45.0%
CCTATGCCTCCACATAGATT+TGG - tig0018573:11457-11476 Msa1367920:intron 45.0%
GGTGACAGTTGGATCTAGAT+TGG + tig0018573:12123-12142 None:intergenic 45.0%
TAGATCCAACTGTCACCTGA+GGG - tig0018573:12126-12145 Msa1367920:CDS 45.0%
AGATCTTCATCGCTATCGTC+TGG + tig0018573:12456-12475 None:intergenic 45.0%
TCTGTTCGAAGTTCCAGATG+TGG - tig0018573:12473-12492 Msa1367920:intron 45.0%
TTCGAAGTTCCAGATGTGGA+AGG - tig0018573:12477-12496 Msa1367920:intron 45.0%
CATTGTGTACCTTCCACATC+TGG + tig0018573:12489-12508 None:intergenic 45.0%
GTCTATGTTCCTTGTCTGCA+GGG + tig0018573:12623-12642 None:intergenic 45.0%
GTTGCTAAGGAATAGGGTCT+CGG - tig0018573:13020-13039 Msa1367920:intron 45.0%
!! AAACTAATTAAAAAAAAAAT+TGG + tig0018573:11495-11514 None:intergenic 5.0%
!!! TTTTTTAATTAAATATTGAT+AGG + tig0018573:11608-11627 None:intergenic 5.0%
!! ATTGTTAAATAAAAATTTAA+CGG + tig0018573:11879-11898 None:intergenic 5.0%
!!! ATTTTATAAATATATAATAG+TGG + tig0018573:13410-13429 None:intergenic 5.0%
CTAGATCCAACTGTCACCTG+AGG - tig0018573:12125-12144 Msa1367920:CDS 50.0%
ACCGATGCTCAACTTCAAGC+AGG - tig0018573:12567-12586 Msa1367920:intron 50.0%
GCCTGCTTGAAGTTGAGCAT+CGG + tig0018573:12571-12590 None:intergenic 50.0%
TGTCTGCAGGGTTTCTTCCA+CGG + tig0018573:12611-12630 None:intergenic 50.0%
TGGAAGAAACCCTGCAGACA+AGG - tig0018573:12611-12630 Msa1367920:intron 50.0%
CGTCTATGTTCCTTGTCTGC+AGG + tig0018573:12624-12643 None:intergenic 50.0%
AGATACCTTAACCAGTGCCC+CGG + tig0018573:13553-13572 None:intergenic 50.0%
TCACTCCCTCAGGTGACAGT+TGG + tig0018573:12134-12153 None:intergenic 55.0%
TCTCGTGCATTCACTCCCTC+AGG + tig0018573:12144-12163 None:intergenic 55.0%
CAACTTCAAGCAGGCTTCCC+CGG - tig0018573:12576-12595 Msa1367920:intron 55.0%
TCGGAGCATGGCGTTCTCAT+TGG + tig0018573:13154-13173 None:intergenic 55.0%
TGAGAACGCCATGCTCCGAA+AGG - tig0018573:13155-13174 Msa1367920:intron 55.0%
GTTGTGTTAACCGGTGCTCC+CGG - tig0018573:13531-13550 Msa1367920:five_prime_UTR 55.0%
TTGTGTTAACCGGTGCTCCC+GGG - tig0018573:13532-13551 Msa1367920:five_prime_UTR 55.0%
GATACCTTAACCAGTGCCCC+GGG + tig0018573:13552-13571 None:intergenic 55.0%
CTGCAGGGTTTCTTCCACGG+CGG + tig0018573:12608-12627 None:intergenic 60.0%
TGTGTTAACCGGTGCTCCCG+GGG - tig0018573:13533-13552 Msa1367920:five_prime_UTR 60.0%
!! TGCTCCCGGGGCACTGGTTA+AGG - tig0018573:13545-13564 Msa1367920:five_prime_UTR 65.0%
TCTTCCACGGCGGCGCTTGC+CGG + tig0018573:12598-12617 None:intergenic 70.0%
! AACCAGTGCCCCGGGAGCAC+CGG + tig0018573:13544-13563 None:intergenic 70.0%
TTCCACGGCGGCGCTTGCCG+GGG + tig0018573:12596-12615 None:intergenic 75.0%
CTTCCACGGCGGCGCTTGCC+GGG + tig0018573:12597-12616 None:intergenic 75.0%
AACCGGTGCTCCCGGGGCAC+TGG - tig0018573:13539-13558 Msa1367920:five_prime_UTR 75.0%
!! TTCCCCGGCAAGCGCCGCCG+TGG - tig0018573:12591-12610 Msa1367920:intron 80.0%
Chromosome Type Strat End Strand Name
tig0018573 gene 11123 13618 11123 ID=Msa1367920;Name=Msa1367920
tig0018573 mRNA 11123 13618 11123 ID=Msa1367920-mRNA-1;Parent=Msa1367920;Name=Msa1367920-mRNA-1;_AED=0.18;_eAED=0.18;_QI=241|1|1|1|1|1|4|284|168
tig0018573 exon 11123 11445 11123 ID=Msa1367920-mRNA-1:exon:221;Parent=Msa1367920-mRNA-1
tig0018573 exon 11565 11721 11565 ID=Msa1367920-mRNA-1:exon:220;Parent=Msa1367920-mRNA-1
tig0018573 exon 12089 12284 12089 ID=Msa1367920-mRNA-1:exon:219;Parent=Msa1367920-mRNA-1
tig0018573 exon 13263 13618 13263 ID=Msa1367920-mRNA-1:exon:218;Parent=Msa1367920-mRNA-1
tig0018573 five_prime_UTR 13378 13618 13378 ID=Msa1367920-mRNA-1:five_prime_utr;Parent=Msa1367920-mRNA-1
tig0018573 CDS 13263 13377 13263 ID=Msa1367920-mRNA-1:cds;Parent=Msa1367920-mRNA-1
tig0018573 CDS 12089 12284 12089 ID=Msa1367920-mRNA-1:cds;Parent=Msa1367920-mRNA-1
tig0018573 CDS 11565 11721 11565 ID=Msa1367920-mRNA-1:cds;Parent=Msa1367920-mRNA-1
tig0018573 CDS 11407 11445 11407 ID=Msa1367920-mRNA-1:cds;Parent=Msa1367920-mRNA-1
tig0018573 three_prime_UTR 11123 11406 11123 ID=Msa1367920-mRNA-1:three_prime_utr;Parent=Msa1367920-mRNA-1
Gene Sequence

>Msa1367920

ATGTCTCTTTCAAGAGCCAATGATACTGAGATGAAGGAAGCTGCAACAACTGGAGCACCTTCATCTTCATCTTCTTCATGGAGTAGGTTACCTCCTATGCCTCCACATAGATTTGACGATAGCGATGAAGATCTGTTCGAAGTTCCAGATGTGGAAGGTACACAATGTCAAAGTGTCCATTCTGAGTTAACAAATCAAAATAGTAACCATAATCAAAGCAATGTAACCGATGCTCAACTTCAAGCAGGCTTCCCCGGCAAGCGCCGCCGTGGAAGAAACCCTGCAGACAAGGAACATAGACGTCTCAAAAGGTTGCTAAGGAATAGGGTCTCGGCCCAACAAGCCCGTGAAAGAAAAAAAGTGTACGTGAATGACTTAGAATCAAGAGCTAAAGAGTTTGAAGATAAGAACTCCAATTTAGAAGAACGTATCTCAACTTTGACCAATGAGAACGCCATGCTCCGAAAGGTTCTTATGAACACTAGACCCAAAGTTGATGAGCAATGA

Protein sequence

>Msa1367920

MSLSRANDTEMKEAATTGAPSSSSSSWSRLPPMPPHRFDDSDEDLFEVPDVEGTQCQSVHSELTNQNSNHNQSNVTDAQLQAGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLESRAKEFEDKNSNLEERISTLTNENAMLRKVLMNTRPKVDEQ*