AlfalfaGEDB | Msa1031420

M. sativa cultivar zhongmu-4 / Msa1031420

KEGG: K14641
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
PFAM: PF01150.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1031420	XP_003624590.2	97.959	441	9	0	1	441	1	441	0.0	887

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1031420	sp\|P52914\|NTPA_PEA	68.326	442	139	1	1	441	1	442	0.0	609

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1031420	Q84UD9	97.959	441	9	0	1	441	1	441	0.0	887

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002690	Msa1031420	0.821068	4.914840e-53	-8.615850e-47
Msa0002700	Msa1031420	0.819579	1.078485e-52	-8.615850e-47
Msa0021570	Msa1031420	0.812850	3.445434e-51	-8.615850e-47
Msa0022230	Msa1031420	0.803113	4.070437e-49	-8.615850e-47
Msa0028940	Msa1031420	0.825009	5.919363e-54	-8.615850e-47
Msa0033190	Msa1031420	0.827208	1.776591e-54	-8.615850e-47
Msa0045530	Msa1031420	0.802578	5.249460e-49	-8.615850e-47
Msa0046020	Msa1031420	0.803272	3.773986e-49	-8.615850e-47
Msa0069590	Msa1031420	0.808260	3.379490e-50	-8.615850e-47
Msa0070580	Msa1031420	0.804556	2.041364e-49	-8.615850e-47

Showing 1 to 10 of 350 entries

Previous1 2 3 4 5…35Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1031420	MtrunA17_Chr7g0252921	97.959	441	9	0	1	441	1	441	0.0	887
Msa1031420	MtrunA17_Chr7g0252911	68.618	427	134	0	15	441	16	442	0.0	621
Msa1031420	MtrunA17_Chr7g0252891	70.045	444	130	3	1	441	22	465	0.0	619
Msa1031420	MtrunA17_Chr4g0015031	69.977	443	131	2	1	441	11	453	0.0	618
Msa1031420	MtrunA17_Chr7g0252881	69.860	428	128	1	15	441	16	443	0.0	610
Msa1031420	MtrunA17_Chr7g0252861	58.904	438	177	2	5	441	29	464	0.0	518
Msa1031420	MtrunA17_Chr6g0461671	56.977	430	184	1	13	441	50	479	2.37e-173	496
Msa1031420	MtrunA17_Chr7g0252941	95.402	174	8	0	242	415	6	179	4.14e-108	318
Msa1031420	MtrunA17_Chr5g0417201	29.206	428	251	16	36	438	72	472	3.39e-37	143
Msa1031420	MtrunA17_Chr7g0252901	50.575	87	43	0	349	435	3	89	2.36e-25	99.8

Showing 1 to 10 of 14 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1031420	AT5G18280.1	55.097	412	184	1	31	441	58	469	1.15e-158	458
Msa1031420	AT3G04080.1	52.570	428	202	1	15	441	41	468	2.56e-152	442
Msa1031420	AT1G14240.1	29.680	438	262	15	23	438	50	463	1.88e-44	162
Msa1031420	AT1G14240.4	29.680	438	262	15	23	438	50	463	1.88e-44	162
Msa1031420	AT1G14240.2	29.680	438	262	15	23	438	50	463	1.88e-44	162
Msa1031420	AT1G14240.3	29.224	438	260	16	23	438	50	459	6.90e-41	153
Msa1031420	AT1G14250.1	28.504	421	251	15	44	438	71	467	3.18e-40	151
Msa1031420	AT1G14230.1	28.571	420	250	15	44	438	81	475	6.49e-40	150
Msa1031420	AT2G02970.1	28.873	426	245	14	44	439	87	484	4.55e-39	149
Msa1031420	AT4G19180.3	26.198	313	172	11	42	308	143	442	4.96e-16	81.3

Showing 1 to 10 of 12 entries

Previous1 2Next

Find 110 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGTTTCCCTTCCCAC+TGG	0.542743	7_1:+66035921	Msa1031420:five_prime_UTR
AAAGGCACATATACATATTC+AGG	0.381400	7_1:+66039368	Msa1031420:intron
AAATAAGCATATGATTGGTA+AGG	0.538345	7_1:+66035803	Msa1031420:five_prime_UTR
AACAGCAGGTTTAAGGCTTT+TGG	0.255686	7_1:+66037525	Msa1031420:CDS
AACGTACAATCTGATGCAGT+AGG	0.629562	7_1:+66037709	Msa1031420:CDS
AACTTAGATCTTCTTCACAT+TGG	0.549130	7_1:+66036154	Msa1031420:CDS
AAGAGCTCCACAAGTACCTG+AGG	0.640256	7_1:+66039012	Msa1031420:CDS
AAGCTTCTAGAATTAAACTT+AGG	0.438991	7_1:+66040430	Msa1031420:CDS
AATAAAACCTGTGAACATAG+AGG	0.575004	7_1:-66039084	None:intergenic
AATATTACCTCTATGTTCAC+AGG	0.473842	7_1:+66039077	Msa1031420:CDS

Showing 1 to 10 of 110 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TATGCTAGTTGTGTTATAAC+CGG	+	chr7_1:66035894-66035913	Msa1031420:five_prime_UTR	30.0%
AACTTAGATCTTCTTCACAT+TGG	+	chr7_1:66036154-66036173	Msa1031420:CDS	30.0%
AGATGAATAAGTAGAGAATC+AGG	+	chr7_1:66036835-66036854	Msa1031420:intron	30.0%
GATGAATAAGTAGAGAATCA+GGG	+	chr7_1:66036836-66036855	Msa1031420:intron	30.0%
TCTTAAGTGTTACACTTTGT+GGG	-	chr7_1:66037184-66037203	None:intergenic	30.0%
GAATTCTTCCGAATTGATAT+TGG	+	chr7_1:66037552-66037571	Msa1031420:CDS	30.0%
TACCAATTCTCAAAAACCAA+AGG	-	chr7_1:66037929-66037948	None:intergenic	30.0%
TCTTAGCATTTCTTATGCTT+GGG	+	chr7_1:66038164-66038183	Msa1031420:intron	30.0%
ATCTCAATATGTGTTTGGTA+GGG	-	chr7_1:66038566-66038585	None:intergenic	30.0%
AACAAGTCTTCTAACTTGAA+CGG	+	chr7_1:66038660-66038679	Msa1031420:intron	30.0%

Showing 1 to 10 of 261 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	66035755	66040751	66035755	ID=Msa1031420;Name=Msa1031420
chr7_1	mRNA	66035755	66040751	66035755	ID=Msa1031420-mRNA-1;Parent=Msa1031420;Name=Msa1031420-mRNA-1;_AED=0.36;_eAED=0.36;_QI=207\|0.87\|0.88\|1\|1\|1\|9\|265\|474
chr7_1	exon	66035755	66036201	66035755	ID=Msa1031420-mRNA-1:exon:14770;Parent=Msa1031420-mRNA-1
chr7_1	exon	66036373	66036501	66036373	ID=Msa1031420-mRNA-1:exon:14771;Parent=Msa1031420-mRNA-1
chr7_1	exon	66037523	66037579	66037523	ID=Msa1031420-mRNA-1:exon:14772;Parent=Msa1031420-mRNA-1
chr7_1	exon	66037676	66037768	66037676	ID=Msa1031420-mRNA-1:exon:14773;Parent=Msa1031420-mRNA-1
chr7_1	exon	66038893	66039098	66038893	ID=Msa1031420-mRNA-1:exon:14774;Parent=Msa1031420-mRNA-1
chr7_1	exon	66039175	66039266	66039175	ID=Msa1031420-mRNA-1:exon:14775;Parent=Msa1031420-mRNA-1
chr7_1	exon	66039372	66039586	66039372	ID=Msa1031420-mRNA-1:exon:14776;Parent=Msa1031420-mRNA-1
chr7_1	exon	66039784	66039973	66039784	ID=Msa1031420-mRNA-1:exon:14777;Parent=Msa1031420-mRNA-1
chr7_1	exon	66040284	66040751	66040284	ID=Msa1031420-mRNA-1:exon:14778;Parent=Msa1031420-mRNA-1
chr7_1	five_prime_UTR	66035755	66035961	66035755	ID=Msa1031420-mRNA-1:five_prime_utr;Parent=Msa1031420-mRNA-1
chr7_1	CDS	66035962	66036201	66035962	ID=Msa1031420-mRNA-1:cds;Parent=Msa1031420-mRNA-1
chr7_1	CDS	66036373	66036501	66036373	ID=Msa1031420-mRNA-1:cds;Parent=Msa1031420-mRNA-1
chr7_1	CDS	66037523	66037579	66037523	ID=Msa1031420-mRNA-1:cds;Parent=Msa1031420-mRNA-1
chr7_1	CDS	66037676	66037768	66037676	ID=Msa1031420-mRNA-1:cds;Parent=Msa1031420-mRNA-1
chr7_1	CDS	66038893	66039098	66038893	ID=Msa1031420-mRNA-1:cds;Parent=Msa1031420-mRNA-1
chr7_1	CDS	66039175	66039266	66039175	ID=Msa1031420-mRNA-1:cds;Parent=Msa1031420-mRNA-1
chr7_1	CDS	66039372	66039586	66039372	ID=Msa1031420-mRNA-1:cds;Parent=Msa1031420-mRNA-1
chr7_1	CDS	66039784	66039973	66039784	ID=Msa1031420-mRNA-1:cds;Parent=Msa1031420-mRNA-1
chr7_1	CDS	66040284	66040486	66040284	ID=Msa1031420-mRNA-1:cds;Parent=Msa1031420-mRNA-1
chr7_1	three_prime_UTR	66040487	66040751	66040487	ID=Msa1031420-mRNA-1:three_prime_utr;Parent=Msa1031420-mRNA-1

Gene Sequence

>Msa1031420

ATGGAGTTTCTAATTAAACTCATCGCATTTCTACTCTTCTTAATGCCTACAATCTCTTCCTCGCAATATCATGGAAACAATATACTCACCAATCGTAAAATATTTCCAAAACAAGAAACTCTAACCTCGTACGCTGTCGTCTTTGATGCTGGTAGCACCGGTAGCCGTGTTCATGTCTACCATTTTGATCAGAACTTAGATCTTCTTCACATTGGCAATGATGTTGAGTTTTATAATAAGACAACGCCCGGTTTGAGTGCATACGCAGATAATCCGAAGGAAGCAGCAGAGTCTCTAATTCCACTTTTAGAGCAAGCAGAAAGAGTGGTTCCTGTGAATCTGCAGCCCAAAACACCCGTTAAGCTTGGGGCAACAGCAGGTTTAAGGCTTTTGGATGGGAATTCTTCCGAATTGATATTGGAAGCGGTGTCGAGTTTGCTCAAAAAGAGAAGCACGTTTAACGTACAATCTGATGCAGTAGGAATTATTGATGGTACTCAAGAAGGTTCTTATTTGTGGGTGACAATTAACTATGTTTTGGGAAACTTGGGAAAAGATTTTTCAGAGACAGTGGCAGTAGCTGATCTTGGAGGGGGATCAGTCCAAATGGTATATGCAGTCTCAAGAGAGCAAGCAAAAAGAGCTCCACAAGTACCTGAGGGAGAGGATCCATACATAAAAAAGATTGTACTTAAAGGAAAGAAATATTACCTCTATGTTCACAGTTATTTGCGCTTTGGCAAAGAAGCATCTCGTGCTGAAATTTTGAAAGTCACTAATGGTTCTCCTAATCCTTGCATTTTAGCTGGCTATCATGGCACATATACATATTCAGGAGAGGAGTATAAGGCATTTTCCCCTGCTTCTGGCCCCAACATTGATGAATGCAAAGAGATAATTCTTAAGGCTCTTAAAGTGAATGATCCATGTCCATATGGGAAATGTACTTTTGGTGGGATATGGAATGGTGGAGGAGGAAGTGGGCAGAAAACTCTTTATGTTACATCATCATTTTATTACGTGCCTACAGGGGTTAATATTGCTGATCCAAATAAGCCCAATTCCAAAATTCGTATCGAGGATCTGAAAACTGGAGCTGAGCAAGTCTGTAAAACAAAATATAAGGATGCAAAAGCCACATATCCACTTATTTTTGAGGATAGTCTTCCATATGCATGCTTGGATCTTATTTACCAATATACGTTGTTTGTTGATGGATTTGGCCTAGACCCATTGCAAGAGATTACCGTGGCAAATCAAATTGAATATCAAGATGCAGTTGTGGATGCAGCATGGCCTCTAGGCAATGCAATAGAAGCTATATATCATCATTGCCCAAATTTGATCGTTTCATGTACTACTTTATTTAAGCTTCTAGAATTAAACTTAGGACACTTTAGTGCTAAAGACTACTTTAGCCAATAA

Protein sequence

>Msa1031420

MEFLIKLIAFLLFLMPTISSSQYHGNNILTNRKIFPKQETLTSYAVVFDAGSTGSRVHVYHFDQNLDLLHIGNDVEFYNKTTPGLSAYADNPKEAAESLIPLLEQAERVVPVNLQPKTPVKLGATAGLRLLDGNSSELILEAVSSLLKKRSTFNVQSDAVGIIDGTQEGSYLWVTINYVLGNLGKDFSETVAVADLGGGSVQMVYAVSREQAKRAPQVPEGEDPYIKKIVLKGKKYYLYVHSYLRFGKEASRAEILKVTNGSPNPCILAGYHGTYTYSGEEYKAFSPASGPNIDECKEIILKALKVNDPCPYGKCTFGGIWNGGGGSGQKTLYVTSSFYYVPTGVNIADPNKPNSKIRIEDLKTGAEQVCKTKYKDAKATYPLIFEDSLPYACLDLIYQYTLFVDGFGLDPLQEITVANQIEYQDAVVDAAWPLGNAIEAIYHHCPNLIVSCTTLFKLLELNLGHFSAKDYFSQ*