AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0567360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0567360 MtrunA17_Chr8g0382231 97.348 641 6 1 1 641 1 630 0.0 1298
Msa0567360 MtrunA17_Chr4g0050021 41.679 691 290 13 26 641 17 669 7.41e-175 513
Msa0567360 MtrunA17_Chr2g0279481 41.453 702 297 16 13 634 3 670 1.04e-172 508
Msa0567360 MtrunA17_Chr5g0401451 34.966 592 302 12 19 577 10 551 3.71e-114 355
Msa0567360 MtrunA17_Chr1g0191711 34.392 567 312 11 24 581 29 544 1.66e-112 348
Msa0567360 MtrunA17_Chr2g0303541 32.701 633 340 11 37 618 10 607 3.94e-112 350
Msa0567360 MtrunA17_Chr2g0285511 32.855 627 321 16 52 633 26 597 2.30e-101 321
Msa0567360 MtrunA17_Chr1g0181181 34.345 527 283 11 41 544 15 501 2.36e-101 320
Msa0567360 MtrunA17_Chr4g0010091 33.582 536 287 8 20 527 2 496 2.53e-101 321
Msa0567360 MtrunA17_Chr1g0195911 33.733 584 287 13 52 582 36 572 1.10e-100 320
Msa0567360 MtrunA17_Chr4g0053841 35.252 556 274 12 52 570 13 519 1.71e-100 318
Msa0567360 MtrunA17_Chr2g0320691 30.116 601 334 11 44 591 15 582 4.32e-100 318
Msa0567360 MtrunA17_Chr8g0374011 34.735 547 253 11 47 529 15 521 5.76e-99 317
Msa0567360 MtrunA17_Chr5g0401341 32.258 589 282 15 38 563 11 545 9.64e-99 315
Msa0567360 MtrunA17_Chr8g0367891 36.810 489 255 8 55 522 29 484 2.67e-98 313
Msa0567360 MtrunA17_Chr7g0268781 33.226 620 305 15 52 613 36 604 3.31e-98 313
Msa0567360 MtrunA17_Chr1g0150191 32.545 550 269 12 46 546 21 517 7.31e-98 312
Msa0567360 MtrunA17_Chr1g0207461 32.877 584 275 18 42 563 18 546 8.56e-96 307
Msa0567360 MtrunA17_Chr7g0245201 35.029 511 268 9 42 527 51 522 7.72e-94 302
Msa0567360 MtrunA17_Chr5g0412591 32.911 553 254 10 42 539 16 506 5.62e-90 291
Msa0567360 MtrunA17_Chr1g0199631 30.808 594 306 13 70 611 8 548 6.31e-89 288
Msa0567360 MtrunA17_Chr4g0076521 33.147 537 300 11 45 551 19 526 8.38e-89 288
Msa0567360 MtrunA17_Chr3g0108331 31.177 603 344 14 52 641 24 568 9.53e-89 287
Msa0567360 MtrunA17_Chr5g0432861 31.827 531 314 8 52 572 25 517 1.82e-84 276
Msa0567360 MtrunA17_Chr2g0290741 31.197 593 328 14 35 598 8 549 5.14e-82 269
Msa0567360 MtrunA17_Chr4g0003891 35.897 312 154 6 215 523 46 314 1.29e-62 214
Msa0567360 MtrunA17_Chr2g0332281 36.452 310 157 6 215 523 24 294 1.21e-59 205
Msa0567360 MtrunA17_Chr4g0037661 25.940 532 275 13 95 570 49 517 7.76e-46 171
Msa0567360 MtrunA17_Chr1g0163311 24.505 555 294 17 55 541 6 503 8.69e-42 159
Msa0567360 MtrunA17_Chr4g0023801 23.583 547 316 13 97 597 50 540 5.53e-38 148
Msa0567360 MtrunA17_Chr2g0280541 23.210 461 268 14 119 553 1 401 1.03e-26 113
Msa0567360 MtrunA17_Chr1g0206621 37.324 142 78 2 59 194 75 211 4.58e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0567360 AT5G10250.2 57.853 624 239 8 22 641 19 622 0.0 697
Msa0567360 AT5G10250.1 56.731 624 231 8 22 641 19 607 0.0 677
Msa0567360 AT5G64330.1 37.551 735 278 14 26 617 24 720 4.93e-157 470
Msa0567360 AT5G64330.2 40.630 603 203 9 44 527 44 610 2.22e-149 447
Msa0567360 AT5G64330.3 40.830 578 187 9 69 527 10 551 4.23e-142 427
Msa0567360 AT5G67385.1 36.640 494 252 8 52 525 25 477 4.85e-108 339
Msa0567360 AT5G48800.1 34.160 524 258 6 34 527 23 489 8.11e-101 320
Msa0567360 AT5G03250.1 33.388 605 307 15 54 610 28 584 1.83e-100 318
Msa0567360 AT1G03010.2 34.142 618 295 15 52 606 9 577 6.67e-100 318
Msa0567360 AT5G13600.1 32.492 634 317 18 44 626 18 591 7.32e-100 317
Msa0567360 AT5G67385.4 36.786 473 238 8 73 525 1 432 8.24e-100 316
Msa0567360 AT5G67385.5 36.786 473 238 8 73 525 1 432 8.24e-100 316
Msa0567360 AT5G67385.2 36.786 473 238 8 73 525 1 432 8.24e-100 316
Msa0567360 AT5G67385.3 36.786 473 238 8 73 525 1 432 8.24e-100 316
Msa0567360 AT1G03010.1 34.237 590 286 12 52 582 36 582 1.09e-99 318
Msa0567360 AT1G03010.3 33.713 614 303 13 52 606 35 603 1.16e-99 318
Msa0567360 AT1G30440.1 33.397 527 271 8 47 527 21 513 1.64e-99 318
Msa0567360 AT2G47860.1 32.823 588 286 11 52 582 37 572 3.65e-97 311
Msa0567360 AT5G67440.3 35.108 507 248 11 46 522 21 476 1.02e-96 308
Msa0567360 AT5G67440.1 35.108 507 248 11 46 522 21 476 1.02e-96 308
Msa0567360 AT3G44820.1 31.208 596 320 13 47 582 18 583 2.19e-94 305
Msa0567360 AT2G14820.2 33.087 541 263 12 38 532 11 498 1.18e-93 302
Msa0567360 AT2G14820.1 33.087 541 263 12 38 532 11 498 1.18e-93 302
Msa0567360 AT3G49970.1 36.219 439 232 9 60 496 2 394 1.62e-93 298
Msa0567360 AT3G49970.2 36.219 439 232 9 60 496 2 394 1.62e-93 298
Msa0567360 AT2G47860.3 32.455 607 286 13 52 582 37 595 1.67e-93 302
Msa0567360 AT1G67900.5 32.689 569 278 10 42 551 16 538 1.69e-93 301
Msa0567360 AT1G67900.1 32.689 569 278 10 42 551 16 538 1.69e-93 301
Msa0567360 AT1G67900.3 32.689 569 278 10 42 551 16 538 1.69e-93 301
Msa0567360 AT1G67900.6 32.689 569 278 10 42 551 16 538 1.69e-93 301
Msa0567360 AT1G67900.2 32.689 569 278 10 42 551 16 538 1.69e-93 301
Msa0567360 AT1G67900.4 32.689 569 278 10 42 551 16 538 1.69e-93 301
Msa0567360 AT3G08570.1 32.743 565 290 12 52 572 34 552 1.19e-92 299
Msa0567360 AT5G67440.2 34.908 487 236 11 66 522 4 439 2.57e-90 291
Msa0567360 AT3G50840.1 30.693 606 348 13 47 630 11 566 1.54e-89 289
Msa0567360 AT2G30520.1 33.673 490 274 9 52 531 30 478 5.99e-89 288
Msa0567360 AT3G08660.1 30.795 591 321 13 52 616 34 562 7.06e-89 288
Msa0567360 AT5G66560.1 32.212 565 256 12 47 527 14 535 2.70e-87 286
Msa0567360 AT4G37590.1 31.404 570 282 15 38 563 11 515 3.49e-87 283
Msa0567360 AT3G26490.1 32.486 551 249 11 43 526 17 511 7.00e-86 280
Msa0567360 AT3G26490.3 32.486 551 249 11 43 526 17 511 7.00e-86 280
Msa0567360 AT3G26490.4 32.486 551 249 11 43 526 17 511 7.00e-86 280
Msa0567360 AT4G31820.1 32.727 495 245 12 46 505 21 462 5.95e-85 277
Msa0567360 AT5G66560.4 34.810 474 225 10 95 527 66 496 1.61e-84 278
Msa0567360 AT3G08660.3 30.991 555 297 11 88 616 8 502 1.82e-84 275
Msa0567360 AT5G66560.3 34.810 474 225 10 95 527 76 506 2.29e-84 278
Msa0567360 AT5G47800.3 32.305 486 274 10 43 505 17 470 4.88e-83 272
Msa0567360 AT5G47800.1 32.305 486 274 10 43 505 17 470 4.88e-83 272
Msa0567360 AT5G47800.4 32.305 486 274 10 43 505 17 470 4.88e-83 272
Msa0567360 AT3G50840.2 31.004 558 313 13 95 630 23 530 1.06e-81 268
Msa0567360 AT3G50840.3 31.004 558 313 13 95 630 23 530 1.06e-81 268
Msa0567360 AT5G47800.2 32.305 486 274 10 43 505 130 583 1.13e-81 271
Msa0567360 AT2G30520.2 33.404 470 262 9 72 531 2 430 1.74e-81 268
Msa0567360 AT2G30520.3 33.404 470 262 9 72 531 2 430 1.74e-81 268
Msa0567360 AT4G31820.2 33.710 442 206 11 99 505 20 409 7.21e-78 257
Msa0567360 AT2G23050.1 30.769 507 262 10 41 526 16 454 1.50e-77 255
Msa0567360 AT2G47860.4 33.705 448 219 8 52 461 37 444 7.72e-75 247
Msa0567360 AT5G03250.2 31.731 520 260 14 138 610 1 472 4.24e-72 241
Msa0567360 AT2G47860.6 33.191 467 219 10 52 461 37 467 9.90e-72 239
Msa0567360 AT2G47860.5 31.474 502 239 10 138 582 1 454 1.31e-68 233
Msa0567360 AT2G47860.2 31.474 502 239 10 138 582 1 454 1.31e-68 233
Msa0567360 AT3G26490.2 31.481 486 221 10 43 461 17 457 2.62e-68 231
Msa0567360 AT3G08660.2 31.494 435 235 8 52 468 34 423 2.12e-67 227
Msa0567360 AT1G52770.1 32.518 409 214 9 197 583 10 378 6.92e-67 226
Msa0567360 AT5G66560.2 30.261 499 232 11 47 461 14 480 3.19e-64 220
Msa0567360 AT3G15570.1 34.375 320 160 6 215 523 29 309 1.01e-57 201
Msa0567360 AT3G19850.1 29.103 457 237 9 94 508 51 462 9.17e-56 199
Msa0567360 AT2G23050.2 29.557 406 201 9 138 526 1 338 7.50e-53 186
Msa0567360 AT5G48130.1 27.083 480 269 10 52 505 39 463 2.06e-52 191
Msa0567360 AT1G50280.2 26.966 445 256 8 95 505 18 427 7.20e-44 164
Msa0567360 AT1G50280.1 26.966 445 256 8 95 505 51 460 7.75e-44 165
Msa0567360 AT3G03510.1 26.840 462 258 14 107 560 8 397 5.08e-37 144
Msa0567360 AT5G17580.2 25.714 490 290 12 42 505 10 451 1.71e-36 144
Msa0567360 AT5G17580.1 26.950 423 245 10 105 505 56 436 8.82e-36 142
Msa0567360 AT3G22104.1 25.664 452 248 12 76 496 26 420 7.88e-35 139
Msa0567360 AT3G22104.4 24.561 399 217 9 125 496 4 345 4.36e-27 115
Msa0567360 AT3G22104.2 24.561 399 217 9 125 496 4 345 4.36e-27 115
Msa0567360 AT3G22104.3 24.561 399 217 9 125 496 4 345 4.36e-27 115

Find 137 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCTGTCAGACTGACTTTC+AGG 0.132980 4_1:+68727024 None:intergenic
CACAGCATCTTCTAACAATT+TGG 0.179939 4_1:+68725735 None:intergenic
CTCCAGCCTGATAGATTCTT+TGG 0.216318 4_1:+68723415 None:intergenic
GAGGAGGAATTATGCTTATT+AGG 0.225056 4_1:+68725381 None:intergenic
ATTCAATATTAGTAGGCTTT+TGG 0.241298 4_1:-68724890 Msa0567360:CDS
CATTTGTCGTGCTTTCTTCA+TGG 0.250887 4_1:-68725817 Msa0567360:CDS
CAGCCTCTAATCTCAAATTC+TGG 0.250919 4_1:-68726031 Msa0567360:CDS
TCTGGTTTCATATATCATTT+AGG 0.251520 4_1:-68727139 Msa0567360:five_prime_UTR
TGCGGATAATTTCAGCAATT+AGG 0.253941 4_1:-68725601 Msa0567360:CDS
AACATTGTAATTGAAAGATT+TGG 0.262115 4_1:+68724838 None:intergenic
TTCCCAGAATTTGAGATTAG+AGG 0.277466 4_1:+68726028 None:intergenic
AAGCTGGTGGTTCGATGATT+TGG 0.289085 4_1:-68725648 Msa0567360:CDS
GACTTTCAGGGTCTTGTGCT+TGG 0.289224 4_1:+68727037 None:intergenic
GCGGATAATTTCAGCAATTA+GGG 0.291903 4_1:-68725600 Msa0567360:CDS
TTAGAAGGGCTTAGAGGATA+TGG 0.292438 4_1:-68725497 Msa0567360:CDS
CTCAAGCTTGAAAACTTTCC+AGG 0.304064 4_1:-68726001 Msa0567360:CDS
TATCAGGCTGGAGTTTAAAT+TGG 0.321879 4_1:-68723405 Msa0567360:CDS
GCACATTATAAGTGGTTTCC+TGG 0.326824 4_1:+68726721 None:intergenic
TGTCTATAGTTTCAGATGTC+TGG 0.334509 4_1:+68723548 None:intergenic
ACCTGGACAACTGTTCTTAG+AGG 0.338185 4_1:+68724521 None:intergenic
TGCGTTGTATACTTTGGTTC+AGG 0.340379 4_1:+68723661 None:intergenic
ACTTTCAGGGTCTTGTGCTT+GGG 0.351122 4_1:+68727038 None:intergenic
CCTACTAATATTGAATTTCC+CGG 0.364748 4_1:+68724897 None:intergenic
ACAGTACTCAGCATTAATTT+AGG 0.366320 4_1:-68727169 Msa0567360:five_prime_UTR
GAGGAGTTAGAAGGGCTTAG+AGG 0.370662 4_1:-68725503 Msa0567360:CDS
ACAATTCTAAAATTCTGTTA+TGG 0.376842 4_1:-68725959 Msa0567360:CDS
TGCAGAGTCTTCTACGGTCT+TGG 0.377991 4_1:+68724609 None:intergenic
TTCTACGGTCTTGGTCAGTT+AGG 0.381517 4_1:+68724618 None:intergenic
CCGGGAAATTCAATATTAGT+AGG 0.395757 4_1:-68724897 Msa0567360:CDS
TTTACCAATGATCTCTGGTT+TGG 0.398294 4_1:+68725568 None:intergenic
GATGCTGCATCCTCACTTGC+GGG 0.402710 4_1:+68725680 None:intergenic
GACAAACCAAAGAATCTATC+AGG 0.413587 4_1:-68723421 Msa0567360:CDS
ACACGGAGAGCCTTCTTCTC+GGG 0.418325 4_1:+68723281 None:intergenic
GAGCTAATTGCTGCAAGCTT+GGG 0.418641 4_1:+68727090 None:intergenic
TCTAACTCCTCATACATTCC+TGG 0.422868 4_1:+68725515 None:intergenic
GACCTTTAGGTAGGTGTCAA+TGG 0.427446 4_1:+68724753 None:intergenic
TTAATTCCTAGATATCAAAA+TGG 0.429080 4_1:-68725221 Msa0567360:CDS
AGCCTCTAATCTCAAATTCT+GGG 0.431924 4_1:-68726030 Msa0567360:CDS
ATGCAACTGCAACAAAAGTC+CGG 0.435207 4_1:-68724916 Msa0567360:CDS
ATTAATTTAGGCAGCGTGTC+TGG 0.435511 4_1:-68727157 Msa0567360:five_prime_UTR
GACACGGAGAGCCTTCTTCT+CGG 0.443418 4_1:+68723280 None:intergenic
TTATCCGAGTTGAAGTCTAT+AGG 0.445995 4_1:+68725932 None:intergenic
TATCCGAGTTGAAGTCTATA+GGG 0.446756 4_1:+68725933 None:intergenic
AGAACCTGCGTTGTATACTT+TGG 0.448430 4_1:+68723655 None:intergenic
CTTGAATTGAAAAGTCTGTT+GGG 0.449484 4_1:+68726745 None:intergenic
TTCTGTCAGACTGACTTTCA+GGG 0.449988 4_1:+68727025 None:intergenic
TCTACGGTCTTGGTCAGTTA+GGG 0.449995 4_1:+68724619 None:intergenic
TCCTTCCATGTAAAACCAAC+AGG 0.451380 4_1:-68723367 Msa0567360:CDS
ATACATTTACCAATGATCTC+TGG 0.452219 4_1:+68725563 None:intergenic
AAGTGGAATCAACTCTCAAC+AGG 0.453660 4_1:-68723578 Msa0567360:CDS
TGAGCTAATTGCTGCAAGCT+TGG 0.454672 4_1:+68727089 None:intergenic
TCTCTAGTTTCACCTCCTGT+TGG 0.456759 4_1:+68723352 None:intergenic
TACCTTGTGCACATTATAAG+TGG 0.465167 4_1:+68726713 None:intergenic
GGAATGTATGAGGAGTTAGA+AGG 0.465676 4_1:-68725512 Msa0567360:CDS
CTTGGTCAGTTAGGGAAGGA+TGG 0.466551 4_1:+68724627 None:intergenic
AGCTATTGTGACATGTTTGT+TGG 0.475232 4_1:+68726969 None:intergenic
TGAAATGATCGAGTATGTTC+TGG 0.476508 4_1:+68724793 None:intergenic
ACTTGAATTGAAAAGTCTGT+TGG 0.476835 4_1:+68726744 None:intergenic
ATTTCAGCAATTAGGGCAAA+GGG 0.478066 4_1:-68725593 Msa0567360:CDS
ATATCAAAATGCGGCTACAT+AGG 0.478687 4_1:-68726067 Msa0567360:CDS
ATCTGCAACAAGAACTTACA+TGG 0.493501 4_1:+68725344 None:intergenic
GCCTCTAAGAACAGTTGTCC+AGG 0.494899 4_1:-68724522 Msa0567360:intron
GCTATTGTGACATGTTTGTT+GGG 0.495372 4_1:+68726970 None:intergenic
ACGAGTGTGGTTTGGTGATG+TGG 0.497567 4_1:+68723315 None:intergenic
GATGCTGTGATTCTATAGCT+TGG 0.503818 4_1:-68725721 Msa0567360:CDS
TGTGAGGAAAGCTTCAGTCT+TGG 0.507277 4_1:+68725838 None:intergenic
GGAACCAAACCAGAGATCAT+TGG 0.508422 4_1:-68725572 Msa0567360:CDS
GATCTACGACGAGTGTGGTT+TGG 0.513023 4_1:+68723307 None:intergenic
CTTGTTGCAGATGCTAAAGA+TGG 0.513993 4_1:-68725333 Msa0567360:CDS
GAAAAGTCTGTTGGGATTCG+AGG 0.514401 4_1:+68726753 None:intergenic
AGCAATGCAAGAGAAGGAAC+CGG 0.515645 4_1:-68723605 Msa0567360:CDS
CATTCCTGGTAGCCATCTCT+TGG 0.516344 4_1:+68725529 None:intergenic
CTGTGATTCTATAGCTTGGA+AGG 0.517789 4_1:-68725717 Msa0567360:CDS
TCAGACCTTGAAAAGAGAGT+TGG 0.522254 4_1:-68725278 Msa0567360:CDS
GTGTAGAATTGTAGTTAAGA+TGG 0.523176 4_1:+68727202 None:intergenic
CAGGCTGGAGTTTAAATTGG+CGG 0.523456 4_1:-68723402 Msa0567360:CDS
TAGAAGGGCTTAGAGGATAT+GGG 0.526409 4_1:-68725496 Msa0567360:CDS
GTAGATCAGCCCCGAGAAGA+AGG 0.527618 4_1:-68723291 Msa0567360:CDS
CTTGTGAAAATCTATCTCCA+TGG 0.528028 4_1:-68725769 Msa0567360:CDS
CCTTGAAAAGAGAGTTGGTA+TGG 0.528846 4_1:-68725273 Msa0567360:CDS
AACCAAAGAATCTATCAGGC+TGG 0.531250 4_1:-68723417 Msa0567360:CDS
AGATATCAAAATGGAGGTCA+AGG 0.533332 4_1:-68725212 Msa0567360:CDS
TGCAACTGCAACAAAAGTCC+GGG 0.536493 4_1:-68724915 Msa0567360:CDS
TTGGTCAGTTAGGGAAGGAT+GGG 0.536654 4_1:+68724628 None:intergenic
AATTTCAGCAATTAGGGCAA+AGG 0.537477 4_1:-68725594 Msa0567360:CDS
AAAAGTCTGTTGGGATTCGA+GGG 0.537749 4_1:+68726754 None:intergenic
AAACATGAAATCACTTCAAG+TGG 0.548709 4_1:-68727061 Msa0567360:exon
AGATGCTGCATCCTCACTTG+CGG 0.555801 4_1:+68725679 None:intergenic
TTGTGAAAATCTATCTCCAT+GGG 0.559597 4_1:-68725768 Msa0567360:CDS
TAAAAGGCTGACCTTTAGGT+AGG 0.562453 4_1:+68724744 None:intergenic
GAGAGCAGCAATGCAAGAGA+AGG 0.563979 4_1:-68723611 Msa0567360:CDS
TATGCCAAGAGATGGCTACC+AGG 0.565928 4_1:-68725533 Msa0567360:CDS
ATGACTGAAGAACTAGAAGA+TGG 0.572238 4_1:-68725872 Msa0567360:CDS
GATCTGTTGCAACTTCAGCT+AGG 0.573474 4_1:+68724860 None:intergenic
TAGAATTGTAGTTAAGATGG+TGG 0.574829 4_1:+68727205 None:intergenic
CAGCATCTAATCAAGAAAGC+TGG 0.575400 4_1:-68725664 Msa0567360:CDS
GTTCTGCAGTTCTACCATGT+TGG 0.579053 4_1:+68723489 None:intergenic
GAGTTGATTCCACTTTGTGC+CGG 0.581941 4_1:+68723586 None:intergenic
CACGGAGAGCCTTCTTCTCG+GGG 0.584375 4_1:+68723282 None:intergenic
ATGGCTACCAGGAATGTATG+AGG 0.585069 4_1:-68725522 Msa0567360:CDS
TCAAATGTTTCACATCCACC+TGG 0.585855 4_1:+68725983 None:intergenic
AGCCATTGACACCTACCTAA+AGG 0.587167 4_1:-68724755 Msa0567360:intron
TCATGCAATATGCCAAGAGA+TGG 0.594644 4_1:-68725541 Msa0567360:CDS
CATGGGACAGCATCTTGTTG+AGG 0.601532 4_1:+68725362 None:intergenic
AGAGAGCACTAGACATAGCA+AGG 0.603854 4_1:-68725426 Msa0567360:CDS
CGAGTGTGGTTTGGTGATGT+GGG 0.605082 4_1:+68723316 None:intergenic
GGGCTTAGAGGATATGGGCA+TGG 0.605115 4_1:-68725491 Msa0567360:CDS
GAATGTATGAGGAGTTAGAA+GGG 0.605950 4_1:-68725511 Msa0567360:CDS
CGGTCTTGGTCAGTTAGGGA+AGG 0.612259 4_1:+68724623 None:intergenic
CGAGAATGTAAAGTCCAACA+TGG 0.615865 4_1:-68723503 Msa0567360:CDS
CATAAAATGATCAATGCGGA+GGG 0.617020 4_1:+68725622 None:intergenic
GGGACAGCATCTTGTTGAGG+AGG 0.618679 4_1:+68725365 None:intergenic
GAGAAGGAACCGGCACAAAG+TGG 0.620698 4_1:-68723595 Msa0567360:CDS
ATTCCTAGATATCAAAATGG+AGG 0.624406 4_1:-68725218 Msa0567360:CDS
AAAATGATCAATGCGGAGGG+TGG 0.627548 4_1:+68725625 None:intergenic
CAAAATGCGGCTACATAGGA+CGG 0.632260 4_1:-68726063 Msa0567360:CDS
AGAATTGTAGTTAAGATGGT+GGG 0.638014 4_1:+68727206 None:intergenic
ATGCGGCTACATAGGACGGT+CGG 0.639956 4_1:-68726059 Msa0567360:CDS
GCATAAAATGATCAATGCGG+AGG 0.642568 4_1:+68725621 None:intergenic
ACAGGAGGTGAAACTAGAGA+TGG 0.647018 4_1:-68723349 Msa0567360:CDS
AAGAAAGCACGACAAATGTG+AGG 0.659530 4_1:+68725822 None:intergenic
AAGCTTGAAAACTTTCCAGG+TGG 0.660259 4_1:-68725998 Msa0567360:CDS
CATCTAATCAAGAAAGCTGG+TGG 0.660897 4_1:-68725661 Msa0567360:CDS
AACCACTTATAATGTGCACA+AGG 0.667560 4_1:-68726715 Msa0567360:intron
CCTCCCTATAGACTTCAACT+CGG 0.675286 4_1:-68725936 Msa0567360:CDS
GGGCTGATCTACGACGAGTG+TGG 0.675575 4_1:+68723302 None:intergenic
TAATGCTGAGTACTGTTCTG+TGG 0.676472 4_1:+68727176 None:intergenic
CCGAGTTGAAGTCTATAGGG+AGG 0.687521 4_1:+68725936 None:intergenic
TCTGCAACAAGAACTTACAT+GGG 0.692050 4_1:+68725345 None:intergenic
AAAGTCTGTTGGGATTCGAG+GGG 0.692715 4_1:+68726755 None:intergenic
TTCCATGTAAAACCAACAGG+AGG 0.698959 4_1:-68723364 Msa0567360:CDS
TACCCCTTGATATCAAAATG+CGG 0.703247 4_1:-68726076 Msa0567360:CDS
TGAACCAAAGTATACAACGC+AGG 0.706992 4_1:-68723659 Msa0567360:CDS
TCCGCATAAAATGATCAATG+CGG 0.719094 4_1:+68725618 None:intergenic
TATGGTGTTAGAAGATGCTG+AGG 0.726855 4_1:-68725255 Msa0567360:CDS
CATACTCGATCATTTCACGA+TGG 0.744904 4_1:-68724787 Msa0567360:CDS
AAGACATAGATGTAGTACAA+CGG 0.746121 4_1:-68724975 Msa0567360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAATTATCTTATTAAAAA+TGG + chr4_1:68726660-68726679 None:intergenic 10.0%
!! TTTAACTGCATAAAATATAA+AGG + chr4_1:68723596-68723615 None:intergenic 15.0%
!!! TATTTTCTCTGTTTATTTTT+TGG - chr4_1:68723693-68723712 Msa0567360:intron 15.0%
!!! TTTATATTTTTCCATTTGTA+AGG + chr4_1:68726361-68726380 None:intergenic 15.0%
!!! ATATAAAGGATTCTATTTCT+GGG + chr4_1:68723582-68723601 None:intergenic 20.0%
!! AATATAAAGGATTCTATTTC+TGG + chr4_1:68723583-68723602 None:intergenic 20.0%
!! ACTCATACAAAAATAACTAT+TGG + chr4_1:68723669-68723688 None:intergenic 20.0%
!!! AATGATTTTCTGCATTTATA+AGG + chr4_1:68723825-68723844 None:intergenic 20.0%
!!! TGGTTTTCAAAAAAATTCTA+AGG + chr4_1:68724282-68724301 None:intergenic 20.0%
!! CAACATATAAAAGATTAAGT+TGG + chr4_1:68724379-68724398 None:intergenic 20.0%
!!! CAACTTAATCTTTTATATGT+TGG - chr4_1:68724377-68724396 Msa0567360:intron 20.0%
!!! ACAATTCTAAAATTCTGTTA+TGG - chr4_1:68724535-68724554 Msa0567360:CDS 20.0%
!! TTAATTCCTAGATATCAAAA+TGG - chr4_1:68725273-68725292 Msa0567360:CDS 20.0%
!! TGCGAAAAATAAAAAATAAC+CGG - chr4_1:68725390-68725409 Msa0567360:CDS 20.0%
!! AACATTGTAATTGAAAGATT+TGG + chr4_1:68725659-68725678 None:intergenic 20.0%
!! ACAAGAAAATAGGAATTAAA+AGG + chr4_1:68725769-68725788 None:intergenic 20.0%
!!! GATTTCTTTTTCAAAGTTAA+AGG + chr4_1:68726234-68726253 None:intergenic 20.0%
!!! TTTTATTTCTAAATCACAGT+AGG + chr4_1:68726519-68726538 None:intergenic 20.0%
!! TATCTTATTAAAAATGGAGT+TGG + chr4_1:68726654-68726673 None:intergenic 20.0%
!! TCTGGTTTCATATATCATTT+AGG - chr4_1:68723355-68723374 Msa0567360:CDS 25.0%
! GCATAAAAAATGAACATTCA+AGG - chr4_1:68723552-68723571 Msa0567360:CDS 25.0%
!!! TCTCTGTTTATTTTTTGGTT+TGG - chr4_1:68723698-68723717 Msa0567360:intron 25.0%
!!! CTCTGTTTATTTTTTGGTTT+GGG - chr4_1:68723699-68723718 Msa0567360:intron 25.0%
!!! CCATGTTTTTATTCTAATTC+TGG + chr4_1:68724302-68724321 None:intergenic 25.0%
! CCAGAATTAGAATAAAAACA+TGG - chr4_1:68724299-68724318 Msa0567360:intron 25.0%
!!! TTTTTTATTTTTCGCAGAGT+TGG + chr4_1:68725386-68725405 None:intergenic 25.0%
! GAAAAATAAAAAATAACCGG+AGG - chr4_1:68725393-68725412 Msa0567360:CDS 25.0%
! AAGATAGAAATTAGTGTCTT+TGG + chr4_1:68725432-68725451 None:intergenic 25.0%
!! ATTCAATATTAGTAGGCTTT+TGG - chr4_1:68725604-68725623 Msa0567360:CDS 25.0%
! TGAATTGAACACAAGAAAAT+AGG + chr4_1:68725779-68725798 None:intergenic 25.0%
!! TATTTTCTTGTGTTCAATTC+AGG - chr4_1:68725778-68725797 Msa0567360:CDS 25.0%
! GGAATTCTTAAAACTCTATT+TGG + chr4_1:68726055-68726074 None:intergenic 25.0%
!!! TGTCATCATTTTTTTCTTCA+TGG + chr4_1:68726076-68726095 None:intergenic 25.0%
! AAAGAAGAAACTTCTTTAGA+AGG - chr4_1:68726297-68726316 Msa0567360:intron 25.0%
AGAATTGTAGTTAAGATGGT+GGG + chr4_1:68723291-68723310 None:intergenic 30.0%
TAGAATTGTAGTTAAGATGG+TGG + chr4_1:68723292-68723311 None:intergenic 30.0%
GTGTAGAATTGTAGTTAAGA+TGG + chr4_1:68723295-68723314 None:intergenic 30.0%
ACAGTACTCAGCATTAATTT+AGG - chr4_1:68723325-68723344 Msa0567360:CDS 30.0%
AAACATGAAATCACTTCAAG+TGG - chr4_1:68723433-68723452 Msa0567360:CDS 30.0%
CTTGAATTGAAAAGTCTGTT+GGG + chr4_1:68723752-68723771 None:intergenic 30.0%
ACTTGAATTGAAAAGTCTGT+TGG + chr4_1:68723753-68723772 None:intergenic 30.0%
! TTTTACTGAGCTAAACAAGA+AGG + chr4_1:68723850-68723869 None:intergenic 30.0%
TTGTGAAAATCTATCTCCAT+GGG - chr4_1:68724726-68724745 Msa0567360:intron 30.0%
ATACATTTACCAATGATCTC+TGG + chr4_1:68724934-68724953 None:intergenic 30.0%
ATTCCTAGATATCAAAATGG+AGG - chr4_1:68725276-68725295 Msa0567360:CDS 30.0%
!! TCATTTTTCTCCTGTCATAT+TGG - chr4_1:68725333-68725352 Msa0567360:CDS 30.0%
AAGACATAGATGTAGTACAA+CGG - chr4_1:68725519-68725538 Msa0567360:CDS 30.0%
CCTACTAATATTGAATTTCC+CGG + chr4_1:68725600-68725619 None:intergenic 30.0%
!! TTATTTTGCAGAGTCTTCTA+CGG + chr4_1:68725894-68725913 None:intergenic 30.0%
!! TGTGTTGATGTGTTTTTCAA+AGG + chr4_1:68726143-68726162 None:intergenic 30.0%
ATTGAAGATCTGAACCAATT+TGG - chr4_1:68726163-68726182 Msa0567360:intron 30.0%
TTGAAGATCTGAACCAATTT+GGG - chr4_1:68726164-68726183 Msa0567360:intron 30.0%
! AAACTTCTTTAGAAGGAAAG+AGG - chr4_1:68726304-68726323 Msa0567360:intron 30.0%
! AACTTCTTTAGAAGGAAAGA+GGG - chr4_1:68726305-68726324 Msa0567360:intron 30.0%
GTACAAATGATCCTTACAAA+TGG - chr4_1:68726347-68726366 Msa0567360:intron 30.0%
! ACTCTATGACACATGATTTT+GGG + chr4_1:68726425-68726444 None:intergenic 30.0%
TGTATAGAGGAAATACTTTG+CGG + chr4_1:68726474-68726493 None:intergenic 30.0%
! ACACAAACTTTTGTGTATAG+AGG + chr4_1:68726487-68726506 None:intergenic 30.0%
AATTCCACAAAACAACATTG+TGG - chr4_1:68726678-68726697 Msa0567360:intron 30.0%
GCTATTGTGACATGTTTGTT+GGG + chr4_1:68723527-68723546 None:intergenic 35.0%
AGCTATTGTGACATGTTTGT+TGG + chr4_1:68723528-68723547 None:intergenic 35.0%
! AGACTTTTCAATTCAAGTCC+AGG - chr4_1:68723755-68723774 Msa0567360:intron 35.0%
AACCACTTATAATGTGCACA+AGG - chr4_1:68723779-68723798 Msa0567360:intron 35.0%
TACCTTGTGCACATTATAAG+TGG + chr4_1:68723784-68723803 None:intergenic 35.0%
! AAGAGCACAATCCTGTTAAT+AGG - chr4_1:68723977-68723996 Msa0567360:intron 35.0%
AGAGCACAATCCTGTTAATA+GGG - chr4_1:68723978-68723997 Msa0567360:intron 35.0%
GATTTATGCTCCCTATTAAC+AGG + chr4_1:68723991-68724010 None:intergenic 35.0%
! CTCTTTTGGATAGAGAAAGA+GGG - chr4_1:68724092-68724111 Msa0567360:intron 35.0%
! TCTTTTGGATAGAGAAAGAG+GGG - chr4_1:68724093-68724112 Msa0567360:intron 35.0%
!! TGTTTTGCATGCTTTTAAGG+AGG + chr4_1:68724172-68724191 None:intergenic 35.0%
!!! TGCTGTTTTGCATGCTTTTA+AGG + chr4_1:68724175-68724194 None:intergenic 35.0%
TACCCCTTGATATCAAAATG+CGG - chr4_1:68724418-68724437 Msa0567360:intron 35.0%
!! TAGCCGCATTTTGATATCAA+GGG + chr4_1:68724424-68724443 None:intergenic 35.0%
ATATCAAAATGCGGCTACAT+AGG - chr4_1:68724427-68724446 Msa0567360:intron 35.0%
AGCCTCTAATCTCAAATTCT+GGG - chr4_1:68724464-68724483 Msa0567360:intron 35.0%
! TTCCCAGAATTTGAGATTAG+AGG + chr4_1:68724469-68724488 None:intergenic 35.0%
! TATCCGAGTTGAAGTCTATA+GGG + chr4_1:68724564-68724583 None:intergenic 35.0%
! TTATCCGAGTTGAAGTCTAT+AGG + chr4_1:68724565-68724584 None:intergenic 35.0%
ATGACTGAAGAACTAGAAGA+TGG - chr4_1:68724622-68724641 Msa0567360:CDS 35.0%
CTTGTGAAAATCTATCTCCA+TGG - chr4_1:68724725-68724744 Msa0567360:intron 35.0%
! ATTTGGATATTTTCAGCCCA+TGG + chr4_1:68724745-68724764 None:intergenic 35.0%
CACAGCATCTTCTAACAATT+TGG + chr4_1:68724762-68724781 None:intergenic 35.0%
CATAAAATGATCAATGCGGA+GGG + chr4_1:68724875-68724894 None:intergenic 35.0%
!! TCCGCATTGATCATTTTATG+CGG - chr4_1:68724875-68724894 Msa0567360:CDS 35.0%
TCCGCATAAAATGATCAATG+CGG + chr4_1:68724879-68724898 None:intergenic 35.0%
TGCGGATAATTTCAGCAATT+AGG - chr4_1:68724893-68724912 Msa0567360:CDS 35.0%
GCGGATAATTTCAGCAATTA+GGG - chr4_1:68724894-68724913 Msa0567360:CDS 35.0%
AATTTCAGCAATTAGGGCAA+AGG - chr4_1:68724900-68724919 Msa0567360:CDS 35.0%
ATTTCAGCAATTAGGGCAAA+GGG - chr4_1:68724901-68724920 Msa0567360:CDS 35.0%
TTTACCAATGATCTCTGGTT+TGG + chr4_1:68724929-68724948 None:intergenic 35.0%
GAATGTATGAGGAGTTAGAA+GGG - chr4_1:68724983-68725002 Msa0567360:CDS 35.0%
GAGGAGGAATTATGCTTATT+AGG + chr4_1:68725116-68725135 None:intergenic 35.0%
TCTGCAACAAGAACTTACAT+GGG + chr4_1:68725152-68725171 None:intergenic 35.0%
ATCTGCAACAAGAACTTACA+TGG + chr4_1:68725153-68725172 None:intergenic 35.0%
!! TGACCTCCATTTTGATATCT+AGG + chr4_1:68725282-68725301 None:intergenic 35.0%
AGATATCAAAATGGAGGTCA+AGG - chr4_1:68725282-68725301 Msa0567360:CDS 35.0%
AAATGGAGGTCAAGGAAAAA+TGG - chr4_1:68725290-68725309 Msa0567360:CDS 35.0%
TTCTCCTGTCATATTGGAAT+TGG - chr4_1:68725339-68725358 Msa0567360:CDS 35.0%
AATGCCAATTCCAATATGAC+AGG + chr4_1:68725346-68725365 None:intergenic 35.0%
CCGGGAAATTCAATATTAGT+AGG - chr4_1:68725597-68725616 Msa0567360:CDS 35.0%
TGAAATGATCGAGTATGTTC+TGG + chr4_1:68725704-68725723 None:intergenic 35.0%
GAATTAAAAGGCTGACCTTT+AGG + chr4_1:68725757-68725776 None:intergenic 35.0%
!! GATCTTTGGAACTTAGTCTT+CGG - chr4_1:68726007-68726026 Msa0567360:CDS 35.0%
TGAAGATCTGAACCAATTTG+GGG - chr4_1:68726165-68726184 Msa0567360:intron 35.0%
AACCAAACAGCAAGACTAAT+TGG - chr4_1:68726379-68726398 Msa0567360:intron 35.0%
!! TTCCAATTAGTCTTGCTGTT+TGG + chr4_1:68726384-68726403 None:intergenic 35.0%
! CTCTATGACACATGATTTTG+GGG + chr4_1:68726424-68726443 None:intergenic 35.0%
! CACTCTATGACACATGATTT+TGG + chr4_1:68726426-68726445 None:intergenic 35.0%
ATCATGTGTCATAGAGTGAA+AGG - chr4_1:68726428-68726447 Msa0567360:intron 35.0%
TCATGTGTCATAGAGTGAAA+GGG - chr4_1:68726429-68726448 Msa0567360:intron 35.0%
!!! AGATCCACAATGTTGTTTTG+TGG + chr4_1:68726685-68726704 None:intergenic 35.0%
ACAAAACAACATTGTGGATC+TGG - chr4_1:68726684-68726703 Msa0567360:intron 35.0%
! TCTGGTTCACATTATAGACA+TGG - chr4_1:68726702-68726721 Msa0567360:intron 35.0%
!! TGGACATATTAGCTCTGAAA+AGG + chr4_1:68726785-68726804 None:intergenic 35.0%
CAGAGCTAATATGTCCATAA+TGG - chr4_1:68726788-68726807 Msa0567360:intron 35.0%
TCTAAGCTGAATCACCATTA+TGG + chr4_1:68726805-68726824 None:intergenic 35.0%
TGTCTATAGTTTCAGATGTC+TGG + chr4_1:68726949-68726968 None:intergenic 35.0%
GACAAACCAAAGAATCTATC+AGG - chr4_1:68727073-68727092 Msa0567360:exon 35.0%
TATCAGGCTGGAGTTTAAAT+TGG - chr4_1:68727089-68727108 Msa0567360:five_prime_UTR 35.0%
! TAATGCTGAGTACTGTTCTG+TGG + chr4_1:68723321-68723340 None:intergenic 40.0%
ATTAATTTAGGCAGCGTGTC+TGG - chr4_1:68723337-68723356 Msa0567360:CDS 40.0%
! TTCTGTCAGACTGACTTTCA+GGG + chr4_1:68723472-68723491 None:intergenic 40.0%
!!! TTTTTGGTTTGGGCTTATGC+AGG - chr4_1:68723709-68723728 Msa0567360:intron 40.0%
AAAAGTCTGTTGGGATTCGA+GGG + chr4_1:68723743-68723762 None:intergenic 40.0%
GCACATTATAAGTGGTTTCC+TGG + chr4_1:68723776-68723795 None:intergenic 40.0%
TTCCAAACAGTATCATCAGC+AGG - chr4_1:68723873-68723892 Msa0567360:intron 40.0%
TCCAAACAGTATCATCAGCA+GGG - chr4_1:68723874-68723893 Msa0567360:intron 40.0%
TATCATCAGCAGGGTATATG+AGG - chr4_1:68723883-68723902 Msa0567360:intron 40.0%
ATCATCAGCAGGGTATATGA+GGG - chr4_1:68723884-68723903 Msa0567360:intron 40.0%
CTTTCTCTATCCAAAAGAGG+TGG + chr4_1:68724091-68724110 None:intergenic 40.0%
CCTCTTTCTCTATCCAAAAG+AGG + chr4_1:68724094-68724113 None:intergenic 40.0%
! CCTCTTTTGGATAGAGAAAG+AGG - chr4_1:68724091-68724110 Msa0567360:intron 40.0%
! CTTTTGGATAGAGAAAGAGG+GGG - chr4_1:68724094-68724113 Msa0567360:intron 40.0%
TAGACAGAGAACATCAGACA+TGG - chr4_1:68724137-68724156 Msa0567360:intron 40.0%
AGAGAACATCAGACATGGAT+AGG - chr4_1:68724142-68724161 Msa0567360:intron 40.0%
GAGAACATCAGACATGGATA+GGG - chr4_1:68724143-68724162 Msa0567360:intron 40.0%
!! AGCCGCATTTTGATATCAAG+GGG + chr4_1:68724423-68724442 None:intergenic 40.0%
!! GTAGCCGCATTTTGATATCA+AGG + chr4_1:68724425-68724444 None:intergenic 40.0%
CAGCCTCTAATCTCAAATTC+TGG - chr4_1:68724463-68724482 Msa0567360:intron 40.0%
CTCAAGCTTGAAAACTTTCC+AGG - chr4_1:68724493-68724512 Msa0567360:intron 40.0%
AAGCTTGAAAACTTTCCAGG+TGG - chr4_1:68724496-68724515 Msa0567360:intron 40.0%
TCAAATGTTTCACATCCACC+TGG + chr4_1:68724514-68724533 None:intergenic 40.0%
! AAGAAAGCACGACAAATGTG+AGG + chr4_1:68724675-68724694 None:intergenic 40.0%
CATTTGTCGTGCTTTCTTCA+TGG - chr4_1:68724677-68724696 Msa0567360:intron 40.0%
GATGCTGTGATTCTATAGCT+TGG - chr4_1:68724773-68724792 Msa0567360:CDS 40.0%
CTGTGATTCTATAGCTTGGA+AGG - chr4_1:68724777-68724796 Msa0567360:CDS 40.0%
CAGCATCTAATCAAGAAAGC+TGG - chr4_1:68724830-68724849 Msa0567360:CDS 40.0%
CATCTAATCAAGAAAGCTGG+TGG - chr4_1:68724833-68724852 Msa0567360:CDS 40.0%
GCATAAAATGATCAATGCGG+AGG + chr4_1:68724876-68724895 None:intergenic 40.0%
TCATGCAATATGCCAAGAGA+TGG - chr4_1:68724953-68724972 Msa0567360:CDS 40.0%
TCTAACTCCTCATACATTCC+TGG + chr4_1:68724982-68725001 None:intergenic 40.0%
GGAATGTATGAGGAGTTAGA+AGG - chr4_1:68724982-68725001 Msa0567360:CDS 40.0%
TTAGAAGGGCTTAGAGGATA+TGG - chr4_1:68724997-68725016 Msa0567360:CDS 40.0%
TAGAAGGGCTTAGAGGATAT+GGG - chr4_1:68724998-68725017 Msa0567360:CDS 40.0%
CTTGTTGCAGATGCTAAAGA+TGG - chr4_1:68725161-68725180 Msa0567360:intron 40.0%
TCAGACCTTGAAAAGAGAGT+TGG - chr4_1:68725216-68725235 Msa0567360:CDS 40.0%
! CCATACCAACTCTCTTTTCA+AGG + chr4_1:68725224-68725243 None:intergenic 40.0%
!! CCTTGAAAAGAGAGTTGGTA+TGG - chr4_1:68725221-68725240 Msa0567360:CDS 40.0%
! TATGGTGTTAGAAGATGCTG+AGG - chr4_1:68725239-68725258 Msa0567360:CDS 40.0%
GGAATTGGCATTAATGCTGA+AGG - chr4_1:68725354-68725373 Msa0567360:CDS 40.0%
!! TGGTCATTTTCATAAGCCTC+CGG + chr4_1:68725412-68725431 None:intergenic 40.0%
! TCTTGCATAGTGCAGTTTTC+GGG + chr4_1:68725503-68725522 None:intergenic 40.0%
! GTCTTGCATAGTGCAGTTTT+CGG + chr4_1:68725504-68725523 None:intergenic 40.0%
ATGCAACTGCAACAAAAGTC+CGG - chr4_1:68725578-68725597 Msa0567360:CDS 40.0%
CATACTCGATCATTTCACGA+TGG - chr4_1:68725707-68725726 Msa0567360:CDS 40.0%
TAAAAGGCTGACCTTTAGGT+AGG + chr4_1:68725753-68725772 None:intergenic 40.0%
GACTAAGTTCCAAAGATCCA+GGG + chr4_1:68726005-68726024 None:intergenic 40.0%
AGACTAAGTTCCAAAGATCC+AGG + chr4_1:68726006-68726025 None:intergenic 40.0%
GGTATTTAAGCAGATGCTAG+TGG + chr4_1:68726122-68726141 None:intergenic 40.0%
GAAAACATCTGACCCCAAAT+TGG + chr4_1:68726180-68726199 None:intergenic 40.0%
! AGTTTTCCATCTGCATGGAA+GGG + chr4_1:68726256-68726275 None:intergenic 40.0%
! TAGTTTTCCATCTGCATGGA+AGG + chr4_1:68726257-68726276 None:intergenic 40.0%
!!! TCACTAGTTTTCCATCTGCA+TGG + chr4_1:68726261-68726280 None:intergenic 40.0%
!! ATGACACATGATTTTGGGGA+GGG + chr4_1:68726420-68726439 None:intergenic 40.0%
!! TATGACACATGATTTTGGGG+AGG + chr4_1:68726421-68726440 None:intergenic 40.0%
! ACATGGCATCTAAGATAGTG+TGG - chr4_1:68726719-68726738 Msa0567360:CDS 40.0%
! TGCGTTGTATACTTTGGTTC+AGG + chr4_1:68726836-68726855 None:intergenic 40.0%
TGAACCAAAGTATACAACGC+AGG - chr4_1:68726835-68726854 Msa0567360:intron 40.0%
AGAACCTGCGTTGTATACTT+TGG + chr4_1:68726842-68726861 None:intergenic 40.0%
AAGTGGAATCAACTCTCAAC+AGG - chr4_1:68726916-68726935 Msa0567360:intron 40.0%
CGAGAATGTAAAGTCCAACA+TGG - chr4_1:68726991-68727010 Msa0567360:CDS 40.0%
AACCAAAGAATCTATCAGGC+TGG - chr4_1:68727077-68727096 Msa0567360:exon 40.0%
TCCTTCCATGTAAAACCAAC+AGG - chr4_1:68727127-68727146 Msa0567360:five_prime_UTR 40.0%
!!! TCCTGTTGGTTTTACATGGA+AGG + chr4_1:68727131-68727150 None:intergenic 40.0%
TTCCATGTAAAACCAACAGG+AGG - chr4_1:68727130-68727149 Msa0567360:five_prime_UTR 40.0%
GAGCTAATTGCTGCAAGCTT+GGG + chr4_1:68723407-68723426 None:intergenic 45.0%
TGAGCTAATTGCTGCAAGCT+TGG + chr4_1:68723408-68723427 None:intergenic 45.0%
! ACTTTCAGGGTCTTGTGCTT+GGG + chr4_1:68723459-68723478 None:intergenic 45.0%
! GTTCTGTCAGACTGACTTTC+AGG + chr4_1:68723473-68723492 None:intergenic 45.0%
AAAGTCTGTTGGGATTCGAG+GGG + chr4_1:68723742-68723761 None:intergenic 45.0%
GAAAAGTCTGTTGGGATTCG+AGG + chr4_1:68723744-68723763 None:intergenic 45.0%
ACCCTGCTGATGATACTGTT+TGG + chr4_1:68723878-68723897 None:intergenic 45.0%
CACACACACACAAACACACT+AGG + chr4_1:68724029-68724048 None:intergenic 45.0%
TCTATCCAAAAGAGGTGGTG+GGG + chr4_1:68724086-68724105 None:intergenic 45.0%
CTCTATCCAAAAGAGGTGGT+GGG + chr4_1:68724087-68724106 None:intergenic 45.0%
TCTCTATCCAAAAGAGGTGG+TGG + chr4_1:68724088-68724107 None:intergenic 45.0%
GGGAAAATTTCCCTCAAGAG+AGG - chr4_1:68724114-68724133 Msa0567360:intron 45.0%
TCTCTGTCTACCTCTCTTGA+GGG + chr4_1:68724127-68724146 None:intergenic 45.0%
TTCTCTGTCTACCTCTCTTG+AGG + chr4_1:68724128-68724147 None:intergenic 45.0%
CAAAATGCGGCTACATAGGA+CGG - chr4_1:68724431-68724450 Msa0567360:intron 45.0%
CCTCCCTATAGACTTCAACT+CGG - chr4_1:68724558-68724577 Msa0567360:CDS 45.0%
TGTGAGGAAAGCTTCAGTCT+TGG + chr4_1:68724659-68724678 None:intergenic 45.0%
TAAAAATGAGCCCGCAAGTG+AGG - chr4_1:68724804-68724823 Msa0567360:CDS 45.0%
AAGCTGGTGGTTCGATGATT+TGG - chr4_1:68724846-68724865 Msa0567360:CDS 45.0%
AAAATGATCAATGCGGAGGG+TGG + chr4_1:68724872-68724891 None:intergenic 45.0%
GGAACCAAACCAGAGATCAT+TGG - chr4_1:68724922-68724941 Msa0567360:CDS 45.0%
ATGGCTACCAGGAATGTATG+AGG - chr4_1:68724972-68724991 Msa0567360:CDS 45.0%
!! AGAGAGCACTAGACATAGCA+AGG - chr4_1:68725068-68725087 Msa0567360:intron 45.0%
!!! GTGCAGTTTTCGGGTGAATT+AGG + chr4_1:68725494-68725513 None:intergenic 45.0%
TGCAACTGCAACAAAAGTCC+GGG - chr4_1:68725579-68725598 Msa0567360:CDS 45.0%
GATCTGTTGCAACTTCAGCT+AGG + chr4_1:68725637-68725656 None:intergenic 45.0%
AGCCATTGACACCTACCTAA+AGG - chr4_1:68725739-68725758 Msa0567360:CDS 45.0%
GACCTTTAGGTAGGTGTCAA+TGG + chr4_1:68725744-68725763 None:intergenic 45.0%
TTGGTCAGTTAGGGAAGGAT+GGG + chr4_1:68725869-68725888 None:intergenic 45.0%
TCTACGGTCTTGGTCAGTTA+GGG + chr4_1:68725878-68725897 None:intergenic 45.0%
TTCTACGGTCTTGGTCAGTT+AGG + chr4_1:68725879-68725898 None:intergenic 45.0%
ACCTGGACAACTGTTCTTAG+AGG + chr4_1:68725976-68725995 None:intergenic 45.0%
AAGATCCAGGGAACTTTACC+TGG + chr4_1:68725993-68726012 None:intergenic 45.0%
GGTAAAGTTCCCTGGATCTT+TGG - chr4_1:68725993-68726012 Msa0567360:CDS 45.0%
AGAAATCCCTTCCATGCAGA+TGG - chr4_1:68726247-68726266 Msa0567360:intron 45.0%
AGCAATGCAAGAGAAGGAAC+CGG - chr4_1:68726889-68726908 Msa0567360:intron 45.0%
! GAGTTGATTCCACTTTGTGC+CGG + chr4_1:68726911-68726930 None:intergenic 45.0%
GTTCTGCAGTTCTACCATGT+TGG + chr4_1:68727008-68727027 None:intergenic 45.0%
CTCCAGCCTGATAGATTCTT+TGG + chr4_1:68727082-68727101 None:intergenic 45.0%
CAGGCTGGAGTTTAAATTGG+CGG - chr4_1:68727092-68727111 Msa0567360:five_prime_UTR 45.0%
!!! CACCTCCTGTTGGTTTTACA+TGG + chr4_1:68727135-68727154 None:intergenic 45.0%
! TCTCTAGTTTCACCTCCTGT+TGG + chr4_1:68727145-68727164 None:intergenic 45.0%
ACAGGAGGTGAAACTAGAGA+TGG - chr4_1:68727145-68727164 Msa0567360:five_prime_UTR 45.0%
! GACTTTCAGGGTCTTGTGCT+TGG + chr4_1:68723460-68723479 None:intergenic 50.0%
! CCGAGTTGAAGTCTATAGGG+AGG + chr4_1:68724561-68724580 None:intergenic 50.0%
AGATGCTGCATCCTCACTTG+CGG + chr4_1:68724818-68724837 None:intergenic 50.0%
TATGCCAAGAGATGGCTACC+AGG - chr4_1:68724961-68724980 Msa0567360:CDS 50.0%
CATTCCTGGTAGCCATCTCT+TGG + chr4_1:68724968-68724987 None:intergenic 50.0%
GAGGAGTTAGAAGGGCTTAG+AGG - chr4_1:68724991-68725010 Msa0567360:CDS 50.0%
CATGGGACAGCATCTTGTTG+AGG + chr4_1:68725135-68725154 None:intergenic 50.0%
CTTGGTCAGTTAGGGAAGGA+TGG + chr4_1:68725870-68725889 None:intergenic 50.0%
TGCAGAGTCTTCTACGGTCT+TGG + chr4_1:68725888-68725907 None:intergenic 50.0%
! GCCTCTAAGAACAGTTGTCC+AGG - chr4_1:68725972-68725991 Msa0567360:CDS 50.0%
GTTGTCCAGGTAAAGTTCCC+TGG - chr4_1:68725985-68726004 Msa0567360:CDS 50.0%
GAGAGCAGCAATGCAAGAGA+AGG - chr4_1:68726883-68726902 Msa0567360:intron 50.0%
!! CGAGTGTGGTTTGGTGATGT+GGG + chr4_1:68727181-68727200 None:intergenic 50.0%
!! ACGAGTGTGGTTTGGTGATG+TGG + chr4_1:68727182-68727201 None:intergenic 50.0%
GATCTACGACGAGTGTGGTT+TGG + chr4_1:68727190-68727209 None:intergenic 50.0%
!! TCCAAAAGAGGTGGTGGGGT+GGG + chr4_1:68724082-68724101 None:intergenic 55.0%
!! ATCCAAAAGAGGTGGTGGGG+TGG + chr4_1:68724083-68724102 None:intergenic 55.0%
ATGCGGCTACATAGGACGGT+CGG - chr4_1:68724435-68724454 Msa0567360:intron 55.0%
GATGCTGCATCCTCACTTGC+GGG + chr4_1:68724817-68724836 None:intergenic 55.0%
GGGCTTAGAGGATATGGGCA+TGG - chr4_1:68725003-68725022 Msa0567360:CDS 55.0%
GGGACAGCATCTTGTTGAGG+AGG + chr4_1:68725132-68725151 None:intergenic 55.0%
CGGTCTTGGTCAGTTAGGGA+AGG + chr4_1:68725874-68725893 None:intergenic 55.0%
GAGAAGGAACCGGCACAAAG+TGG - chr4_1:68726899-68726918 Msa0567360:intron 55.0%
GTAGATCAGCCCCGAGAAGA+AGG - chr4_1:68727203-68727222 Msa0567360:five_prime_UTR 55.0%
ACACGGAGAGCCTTCTTCTC+GGG + chr4_1:68727216-68727235 None:intergenic 55.0%
GACACGGAGAGCCTTCTTCT+CGG + chr4_1:68727217-68727236 None:intergenic 55.0%
! TCCCACCCCACCACCTCTTT+TGG - chr4_1:68724078-68724097 Msa0567360:intron 60.0%
GGGCTGATCTACGACGAGTG+TGG + chr4_1:68727195-68727214 None:intergenic 60.0%
CACGGAGAGCCTTCTTCTCG+GGG + chr4_1:68727215-68727234 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 68723276 68727240 68723276 ID=Msa0567360;Name=Msa0567360
chr4_1 mRNA 68723276 68727240 68723276 ID=Msa0567360-mRNA-1;Parent=Msa0567360;Name=Msa0567360-mRNA-1;_AED=0.08;_eAED=0.08;_QI=161|0.8|0.83|1|1|1|6|0|641
chr4_1 exon 68723276 68723692 68723276 ID=Msa0567360-mRNA-1:exon:22766;Parent=Msa0567360-mRNA-1
chr4_1 exon 68724523 68724651 68724523 ID=Msa0567360-mRNA-1:exon:22765;Parent=Msa0567360-mRNA-1
chr4_1 exon 68724756 68725029 68724756 ID=Msa0567360-mRNA-1:exon:22764;Parent=Msa0567360-mRNA-1
chr4_1 exon 68725200 68726098 68725200 ID=Msa0567360-mRNA-1:exon:22763;Parent=Msa0567360-mRNA-1
chr4_1 exon 68726716 68726785 68726716 ID=Msa0567360-mRNA-1:exon:22762;Parent=Msa0567360-mRNA-1
chr4_1 exon 68726943 68727240 68726943 ID=Msa0567360-mRNA-1:exon:22761;Parent=Msa0567360-mRNA-1
chr4_1 five_prime_UTR 68727080 68727240 68727080 ID=Msa0567360-mRNA-1:five_prime_utr;Parent=Msa0567360-mRNA-1
chr4_1 CDS 68726943 68727079 68726943 ID=Msa0567360-mRNA-1:cds;Parent=Msa0567360-mRNA-1
chr4_1 CDS 68726716 68726785 68726716 ID=Msa0567360-mRNA-1:cds;Parent=Msa0567360-mRNA-1
chr4_1 CDS 68725200 68726098 68725200 ID=Msa0567360-mRNA-1:cds;Parent=Msa0567360-mRNA-1
chr4_1 CDS 68724756 68725029 68724756 ID=Msa0567360-mRNA-1:cds;Parent=Msa0567360-mRNA-1
chr4_1 CDS 68724523 68724651 68724523 ID=Msa0567360-mRNA-1:cds;Parent=Msa0567360-mRNA-1
chr4_1 CDS 68723276 68723692 68723276 ID=Msa0567360-mRNA-1:cds;Parent=Msa0567360-mRNA-1
Gene Sequence

>Msa0567360

ATGAAATCACTTCAAGTGGCCCAAGCACAAGACCCTGAAAGTCAGTCTGACAGAACTGAACAAGTTTCAGATAAAAGCATAGTTATTCCCAACAAACATGTCACAATAGCTGATAGCATAAAAAATGAACATTCAAGGTTCGTTGCCCCTCGAATCCCAACAGACTTTTCAATTCAAGTCCAGGAAACCACTTATAATGTGCACAAGTACCCCTTGATATCAAAATGCGGCTACATAGGACGGTCGGAAGTACAGCCTCTAATCTCAAATTCTGGGAATGTGCTCAAGCTTGAAAACTTTCCAGGTGGATGTGAAACATTTGAAACAATTCTAAAATTCTGTTATGGCCTCCCTATAGACTTCAACTCGGATAATGTAGCTGCACTAAGATGTGCATCAGAATTTCTAGAGATGACTGAAGAACTAGAAGATGGCAATCTCATTTCCAAGACTGAAGCTTTCCTCACATTTGTCGTGCTTTCTTCATGGAAAGACACTGTTACTGTTCTGAAATCTTGTGAAAATCTATCTCCATGGGCTGAAAATATCCAAATTGTTAGAAGATGCTGTGATTCTATAGCTTGGAAGGCTACTAAAAATGAGCCCGCAAGTGAGGATGCAGCATCTAATCAAGAAAGCTGGTGGTTCGATGATTTGGCCACCCTCCGCATTGATCATTTTATGCGGATAATTTCAGCAATTAGGGCAAAGGGAACCAAACCAGAGATCATTGGTAAATGTATCATGCAATATGCCAAGAGATGGCTACCAGGAATGTATGAGGAGTTAGAAGGGCTTAGAGGATATGGGCATGGAAAAAGTAATCTACAGTTCACTATATTTAGCATGAAGAAAGAAGAGAGCACTAGACATAGCAAGGAGCAAACGACTATTATTGAAAGCCTAATAAGCATAATTCCTCCTCAACAAGATGCTGTCCCATGTAAGTTCTTGTTGCAGATGCTAAAGATGGCAATGATGTATTCTGTATCATCAGCTCTCATTTCAGACCTTGAAAAGAGAGTTGGTATGGTGTTAGAAGATGCTGAGGTGAATGATCTCTTAATTCCTAGATATCAAAATGGAGGTCAAGGAAAAATGGTCAACATGCCTAATTCACCCGAAAACTGCACTATGCAAGACATAGATGTAGTACAACGGATTGTTGAATACTTCTTGATGCATGAAAAACAGCAAATGCAACTGCAACAAAAGTCCGGGAAATTCAATATTAGTAGGCTTTTGGACAATTACCTAGCTGAAGTTGCAACAGATCCAAATCTTTCAATTACAATGTTTCAAGTCTTAGCTGAATTACTGCCAGAACATACTCGATCATTTCACGATGGTCTATATAGAGCCATTGACACCTACCTAAAGACCCATCCTTCCCTAACTGACCAAGACCGTAGAAGACTCTGCAAAATAATGAACTGTGAAAAACTCTCACTTGATGCATGCATACATGCTGCACAAAATGATAGATTGCCTCTAAGAACAGTTGTCCAGAAATTGTCACCTGAACCAAAGTATACAACGCAGGTTCTATTTGCAGAGCAAGTAAAGATGAGAGCAGCAATGCAAGAGAAGGAACCGGCACAAAGTGGAATCAACTCTCAACAGGATGTAAACCAGACATCTGAAACTATAGACATAAAAACACTCAAAGCAGAACTCGAGAATGTAAAGTCCAACATGGTAGAACTGCAGAACGACTACTTTGAGTTGCAAGAAGAGTATAAAAAGTTAACTAGCAACGACAAACCAAAGAATCTATCAGGCTGGAGTTTAAATTGGCGGAAGATCAAGAAATCCTTCCATGTAAAACCAACAGGAGGTGAAACTAGAGATGGACAAGATATGCCCACATCACCAAACCACACTCGTCGTAGATCAGCCCCGAGAAGAAGGCTCTCCGTGTCTTAA
Protein sequence

>Msa0567360

MKSLQVAQAQDPESQSDRTEQVSDKSIVIPNKHVTIADSIKNEHSRFVAPRIPTDFSIQVQETTYNVHKYPLISKCGYIGRSEVQPLISNSGNVLKLENFPGGCETFETILKFCYGLPIDFNSDNVAALRCASEFLEMTEELEDGNLISKTEAFLTFVVLSSWKDTVTVLKSCENLSPWAENIQIVRRCCDSIAWKATKNEPASEDAASNQESWWFDDLATLRIDHFMRIISAIRAKGTKPEIIGKCIMQYAKRWLPGMYEELEGLRGYGHGKSNLQFTIFSMKKEESTRHSKEQTTIIESLISIIPPQQDAVPCKFLLQMLKMAMMYSVSSALISDLEKRVGMVLEDAEVNDLLIPRYQNGGQGKMVNMPNSPENCTMQDIDVVQRIVEYFLMHEKQQMQLQQKSGKFNISRLLDNYLAEVATDPNLSITMFQVLAELLPEHTRSFHDGLYRAIDTYLKTHPSLTDQDRRRLCKIMNCEKLSLDACIHAAQNDRLPLRTVVQKLSPEPKYTTQVLFAEQVKMRAAMQEKEPAQSGINSQQDVNQTSETIDIKTLKAELENVKSNMVELQNDYFELQEEYKKLTSNDKPKNLSGWSLNWRKIKKSFHVKPTGGETRDGQDMPTSPNHTRRRSAPRRRLSVS*