AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0334950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334950 MtrunA17_Chr2g0319311 93.103 348 4 1 1 328 1 348 0.0 660
Msa0334950 MtrunA17_Chr4g0076011 60.119 336 85 6 10 345 1 287 3.32e-114 339
Msa0334950 MtrunA17_Chr6g0454101 43.529 340 170 4 10 328 1 339 7.36e-91 281
Msa0334950 MtrunA17_Chr7g0218571 43.188 345 169 4 10 328 1 344 7.46e-91 281
Msa0334950 MtrunA17_Chr3g0097091 33.815 346 190 7 10 328 1 334 1.08e-52 182
Msa0334950 MtrunA17_Chr2g0283461 31.553 206 121 5 124 328 163 349 5.01e-29 117
Msa0334950 MtrunA17_Chr8g0351091 33.166 199 123 2 130 328 238 426 9.00e-29 117
Msa0334950 MtrunA17_Chr2g0290961 32.161 199 121 2 130 328 297 481 1.22e-26 110
Msa0334950 MtrunA17_Chr4g0061711 30.693 202 114 5 134 328 168 350 3.55e-26 108
Msa0334950 MtrunA17_Chr8g0383241 30.653 199 121 3 130 328 124 305 2.38e-25 106
Msa0334950 MtrunA17_Chr2g0277591 29.612 206 125 4 124 328 163 349 7.58e-25 105
Msa0334950 MtrunA17_Chr3g0138381 30.653 199 128 2 130 328 291 479 2.56e-24 103
Msa0334950 MtrunA17_Chr2g0308241 30.986 213 129 6 120 328 152 350 1.56e-23 101
Msa0334950 MtrunA17_Chr7g0246371 33.668 199 120 2 130 328 292 478 2.35e-23 101
Msa0334950 MtrunA17_Chr7g0235161 33.891 239 142 6 93 328 149 374 1.10e-21 95.9
Msa0334950 MtrunA17_Chr6g0456071 30.275 218 136 6 115 328 164 369 1.36e-20 92.8
Msa0334950 MtrunA17_Chr7g0260711 28.492 179 91 3 150 328 324 465 1.05e-17 84.3
Msa0334950 MtrunA17_Chr1g0184751 29.851 134 87 2 135 266 252 380 6.75e-13 69.7
Msa0334950 MtrunA17_Chr7g0245621 32.407 108 69 1 155 262 311 414 7.82e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334950 AT5G54690.1 74.487 341 65 3 10 328 1 341 8.17e-169 481
Msa0334950 AT3G01040.2 44.118 340 168 3 10 328 1 339 5.99e-94 290
Msa0334950 AT3G01040.3 44.118 340 168 3 10 328 1 339 5.99e-94 290
Msa0334950 AT5G15470.1 43.824 340 169 3 10 328 1 339 1.11e-93 289
Msa0334950 AT3G01040.1 39.706 340 150 4 10 328 1 306 4.70e-72 232
Msa0334950 AT3G58790.1 35.220 318 167 7 40 328 39 346 1.44e-47 169
Msa0334950 AT3G58790.2 42.365 203 107 2 130 328 18 214 1.97e-46 163
Msa0334950 AT1G18580.1 30.986 213 135 4 118 328 150 352 1.32e-30 122
Msa0334950 AT5G47780.1 34.171 199 117 2 130 328 246 430 8.67e-29 117
Msa0334950 AT2G20810.1 33.173 208 117 6 124 328 164 352 1.04e-27 114
Msa0334950 AT3G61130.1 33.171 205 116 3 124 328 304 487 2.12e-27 113
Msa0334950 AT3G25140.1 33.641 217 131 4 115 328 167 373 1.25e-24 105
Msa0334950 AT2G46480.2 34.078 179 108 2 150 328 186 354 3.17e-24 103
Msa0334950 AT2G46480.1 34.078 179 108 2 150 328 199 367 3.66e-24 103
Msa0334950 AT2G46480.3 34.078 179 108 2 150 328 186 354 3.94e-24 103
Msa0334950 AT2G46480.4 34.078 179 108 2 150 328 199 367 4.36e-24 103
Msa0334950 AT3G02350.1 33.495 206 124 4 124 328 182 375 9.60e-24 102
Msa0334950 AT4G38270.1 31.696 224 134 5 111 328 284 494 4.12e-23 100
Msa0334950 AT4G38270.2 31.696 224 134 5 111 328 280 490 4.50e-23 100
Msa0334950 AT2G30575.1 28.141 199 107 4 130 328 259 421 1.14e-16 81.6
Msa0334950 AT1G06780.2 26.804 194 107 4 135 328 255 413 1.38e-16 81.3
Msa0334950 AT1G06780.1 26.804 194 107 4 135 328 242 400 1.62e-16 80.9
Msa0334950 AT2G38650.3 37.273 110 63 3 146 255 282 385 9.80e-15 75.5
Msa0334950 AT2G38650.2 33.333 126 79 2 130 255 265 385 1.67e-14 75.1
Msa0334950 AT2G38650.1 33.333 126 79 2 130 255 265 385 1.67e-14 75.1

Find 270 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAATGATGATGCCATTTA+AGG 0.125675 2_4:+54053754 Msa0334950:three_prime_UTR
AAAATTAGGGCCAAGGATTT+TGG 0.132357 2_4:+54049969 Msa0334950:CDS
TATATTGTGTATGTCTATTT+TGG 0.156127 2_4:+54048283 Msa0334950:exon
TCTTCCTCAAATGCCCATTT+TGG 0.158216 2_4:+54053067 Msa0334950:three_prime_UTR
TCCACGTTATAGATCCTTTC+TGG 0.192422 2_4:+54051916 Msa0334950:three_prime_UTR
CCTCTGTTTAAAACCTTAAA+TGG 0.194393 2_4:-54053767 None:intergenic
ATATAGATACTCTTGGATTT+TGG 0.205827 2_4:-54050553 None:intergenic
TAACTGTTTACGACCTAATA+AGG 0.231203 2_4:+54050782 Msa0334950:CDS
CGTCGAGGCGCCTTTCTTAT+AGG 0.234099 2_4:+54048405 Msa0334950:CDS
AAAGTTTGGTATATCACTTC+TGG 0.235664 2_4:-54050128 None:intergenic
ACCTAACCTTGCTTAGCATT+TGG 0.237670 2_4:-54048062 None:intergenic
CATTTGTCTTTATTGTATTA+TGG 0.238562 2_4:-54051703 None:intergenic
CAAATGATTAAGATCTTAAT+TGG 0.241018 2_4:+54053307 Msa0334950:three_prime_UTR
TGATGATGGATTGGAAATTT+TGG 0.242376 2_4:+54053705 Msa0334950:three_prime_UTR
AACTGAAGCAACCCAGATTT+CGG 0.248118 2_4:-54053423 None:intergenic
ATACACCTACCCGAGGTAAA+AGG 0.249597 2_4:+54051098 Msa0334950:CDS
AAATGGTATTGATGTAAATT+TGG 0.260338 2_4:+54053660 Msa0334950:three_prime_UTR
AGAAGGTGCGGTCGCAGTTT+AGG 0.262845 2_4:+54050967 Msa0334950:CDS
TCCTTTGAGATGGGTGGGTT+AGG 0.269222 2_4:+54053532 Msa0334950:three_prime_UTR
CGGGATTTCAACCCGAAATC+TGG 0.272466 2_4:+54053411 Msa0334950:three_prime_UTR
AATTATATTTGCAGGTTGTC+TGG 0.274163 2_4:+54049942 Msa0334950:intron
TCAGAAGAATTCAAGATTCT+TGG 0.275876 2_4:+54053184 Msa0334950:three_prime_UTR
ATGTGTATAACAACCTTATT+AGG 0.277373 2_4:-54050795 None:intergenic
CCTTTGAGATGGGTGGGTTA+GGG 0.279888 2_4:+54053533 Msa0334950:three_prime_UTR
TGGTTATGTTGAATCCAAAA+TGG 0.282635 2_4:-54053081 None:intergenic
TAAGAGTTTACAGTTGATTC+AGG 0.287098 2_4:-54050000 None:intergenic
GTCCACAATGATCTTAGTTC+TGG 0.292501 2_4:-54052047 None:intergenic
TTTGAGGGATGCATGATATA+TGG 0.301206 2_4:+54053611 Msa0334950:three_prime_UTR
CTTTATTGTATTATGGTAGA+AGG 0.307655 2_4:-54051696 None:intergenic
CCTAACCTTGCTTAGCATTT+GGG 0.308038 2_4:-54048061 None:intergenic
ACAAGTTTGTGATGTCAAAA+AGG 0.308600 2_4:+54051357 Msa0334950:three_prime_UTR
ACTGAAGCAACCCAGATTTC+GGG 0.310833 2_4:-54053422 None:intergenic
GAAGGTGCGGTCGCAGTTTA+GGG 0.310979 2_4:+54050968 Msa0334950:CDS
TTTGATTTCTCATTCAAAAT+TGG 0.312041 2_4:+54052604 Msa0334950:three_prime_UTR
CTCAATAACCCTAAACTAAT+AGG 0.316549 2_4:-54053457 None:intergenic
CAATTAAGATCTTAATCATT+TGG 0.318601 2_4:-54053306 None:intergenic
ATGTTAAGTTATGCTGTAAA+AGG 0.320979 2_4:-54048124 None:intergenic
TTCAACATAACCACTGGCTT+TGG 0.323775 2_4:+54053091 Msa0334950:three_prime_UTR
ACATAAAATTAACTTCTATA+TGG 0.324180 2_4:-54047767 None:intergenic
CTGCAACATTAGAGCATGAT+AGG 0.327435 2_4:+54052106 Msa0334950:three_prime_UTR
TGGTAATATATGCAAATATA+AGG 0.329451 2_4:-54047650 None:intergenic
CAATTGGTTCATCTAAAGTT+TGG 0.330150 2_4:-54050142 None:intergenic
ACAAACTTTAGAAGAGTTCA+TGG 0.335034 2_4:+54050199 Msa0334950:CDS
GGTTGTTGAAAGGGATGTTT+TGG 0.337358 2_4:+54053492 Msa0334950:three_prime_UTR
ACCTAGTCCTTTGTTCCATA+AGG 0.339141 2_4:-54050527 None:intergenic
CTGTTATTAGGTAACCCTTA+TGG 0.345194 2_4:+54050512 Msa0334950:intron
TATGTAACTTAAGGTTTGTT+TGG 0.346365 2_4:-54047858 None:intergenic
CCTTTGAAAACCAATCAAAA+TGG 0.349718 2_4:-54050908 None:intergenic
AGGCATGTTACTGTCCTTCC+AGG 0.350319 2_4:+54048347 Msa0334950:CDS
TTCTCCATTGCTTCTAAAAC+AGG 0.359843 2_4:-54050939 None:intergenic
AACTTCGCAGACTTCGTTAT+CGG 0.363743 2_4:+54052785 Msa0334950:three_prime_UTR
TTGCGCGACTCGAGCCTGTT+AGG 0.369635 2_4:+54051630 Msa0334950:three_prime_UTR
TATTACATATATGTAACTTA+AGG 0.369669 2_4:-54047867 None:intergenic
TAGTTCTTCTTCCACTCATT+AGG 0.370993 2_4:+54052201 Msa0334950:three_prime_UTR
GAGAAATCAAATTACTTTCA+AGG 0.372539 2_4:-54052592 None:intergenic
TATCTGAGGCTAAAACAAAA+TGG 0.373236 2_4:-54050719 None:intergenic
TAAGCAATACATATCATCAT+TGG 0.375137 2_4:+54051498 Msa0334950:three_prime_UTR
TTCTGGCATATGCTTGGATT+GGG 0.375631 2_4:+54051933 Msa0334950:three_prime_UTR
AAGGCGTGCTGCTGCGTTGT+TGG 0.378821 2_4:-54050646 None:intergenic
ATGATATGTATTGCTTATAT+TGG 0.379003 2_4:-54051492 None:intergenic
TAAATTGTCAGTGGTGAAAA+TGG 0.381839 2_4:-54053131 None:intergenic
TGTATTACATTCTACAGAAA+AGG 0.383227 2_4:+54051537 Msa0334950:three_prime_UTR
TTGGGTCAGGCATGTCAAAA+TGG 0.384682 2_4:-54048043 None:intergenic
ATGAACTCTTCTAAAGTTTG+TGG 0.385053 2_4:-54050197 None:intergenic
CCTAGTCCTTTGTTCCATAA+GGG 0.386334 2_4:-54050526 None:intergenic
GGCTAAAACAAAATGGTAAT+AGG 0.387821 2_4:-54050712 None:intergenic
AAGAAGGAGGAGATGTTGTT+TGG 0.395383 2_4:-54047954 None:intergenic
TTTCTGGCATATGCTTGGAT+TGG 0.395599 2_4:+54051932 Msa0334950:three_prime_UTR
TGGGTTAGGGGAAGGGAGTG+AGG 0.398727 2_4:+54053546 Msa0334950:three_prime_UTR
GTGGTTGAGGACGTGGTACT+TGG 0.401054 2_4:-54047716 None:intergenic
TATGCTTGGATTGGGATATC+AGG 0.401194 2_4:+54051941 Msa0334950:three_prime_UTR
GTTATTGAGAGGCTTCTCTA+AGG 0.403019 2_4:+54053471 Msa0334950:three_prime_UTR
TTCAAGGTTAGGCCAACTAT+AGG 0.404256 2_4:-54052851 None:intergenic
TCAATCACAGCAGGTGATAA+AGG 0.405589 2_4:-54050870 None:intergenic
AATTCAATGAAATGGTCCTT+TGG 0.408182 2_4:-54052474 None:intergenic
TTTAGTTCATCATTGCCAAT+TGG 0.409872 2_4:-54050158 None:intergenic
TAGGGGAAGGGAGTGAGGAC+TGG 0.410462 2_4:+54053551 Msa0334950:three_prime_UTR
TAACACAGACAACAATGATA+TGG 0.411132 2_4:+54052234 Msa0334950:three_prime_UTR
CCTGGATTGATAGCATTTCA+TGG 0.413843 2_4:+54051888 Msa0334950:three_prime_UTR
TATTGATGTAAATTTGGTAT+TGG 0.415020 2_4:+54053666 Msa0334950:three_prime_UTR
AGAAACAAAATTCAATGAAA+TGG 0.416134 2_4:-54052482 None:intergenic
GCCGGATTCAGTTTGTAAAC+TGG 0.416927 2_4:-54053374 None:intergenic
TCAAGACAATGAAGTTGTTT+CGG 0.419494 2_4:-54050600 None:intergenic
CAGAAGAATTCAAGATTCTT+GGG 0.420343 2_4:+54053185 Msa0334950:three_prime_UTR
TGGTTTCTTCATTCAAGGTT+AGG 0.422073 2_4:-54052862 None:intergenic
AACGAATGTGCTTGGGCCTA+CGG 0.428513 2_4:+54051434 Msa0334950:three_prime_UTR
TCTTATCTTGATAGAACATT+GGG 0.428742 2_4:-54053829 None:intergenic
CTTATTATCCCATGCAGGCT+TGG 0.429889 2_4:+54050835 Msa0334950:CDS
AGATGGGTGGGTTAGGGGAA+GGG 0.431709 2_4:+54053539 Msa0334950:three_prime_UTR
GAAGGTGGTTTCTTCATTCA+AGG 0.435414 2_4:-54052867 None:intergenic
TTTATGGGATTGGAGGTAAG+AGG 0.435981 2_4:-54052989 None:intergenic
CAGATTTCGGGTTGAAATCC+CGG 0.438644 2_4:-54053410 None:intergenic
TTGTTTGGTGTATCTATGCT+TGG 0.439537 2_4:-54047843 None:intergenic
TTTATCACCTGCTGTGATTG+AGG 0.440648 2_4:+54050872 Msa0334950:CDS
TTTATTGTATTATGGTAGAA+GGG 0.445975 2_4:-54051695 None:intergenic
GATCCTTTCTGGCATATGCT+TGG 0.446300 2_4:+54051927 Msa0334950:three_prime_UTR
CCTTGCTTAGCATTTGGGTC+AGG 0.448391 2_4:-54048056 None:intergenic
CATTGTTGTCTGTGTTATCA+TGG 0.448706 2_4:-54052228 None:intergenic
AGATAATGTGCTTGCTGCCT+CGG 0.449906 2_4:+54050737 Msa0334950:CDS
GGGTTGTGAGTGCAGAGAAA+TGG 0.450689 2_4:-54052919 None:intergenic
CAAACTTTAGATGAACCAAT+TGG 0.453888 2_4:+54050143 Msa0334950:CDS
GCTTTGCCCTGCCATTGAAA+TGG 0.454180 2_4:-54052004 None:intergenic
GGTACTTGGAGTGAAAATTC+AGG 0.455300 2_4:-54047702 None:intergenic
TCAATCCCAACGAATGTGCT+TGG 0.455578 2_4:+54051426 Msa0334950:three_prime_UTR
AACTGATGAACTGATCTTCA+AGG 0.455683 2_4:-54052709 None:intergenic
AATTGGCAATGATGAACTAA+AGG 0.456766 2_4:+54050160 Msa0334950:CDS
TTAAATCAGACCTGAGTTTG+TGG 0.457853 2_4:+54051847 Msa0334950:three_prime_UTR
GTGTCATCCATTTCAATGGC+AGG 0.458742 2_4:+54051997 Msa0334950:three_prime_UTR
ACCAAGCTCTTTCAAACAAA+AGG 0.461584 2_4:-54051608 None:intergenic
TTTGAGGAAGAGAGTAACTT+TGG 0.461704 2_4:-54053055 None:intergenic
GAATCCAAAATGGGCATTTG+AGG 0.461750 2_4:-54053071 None:intergenic
GGATGTGGATGTAGCTTTGA+GGG 0.462607 2_4:+54053576 Msa0334950:three_prime_UTR
AAGTTTGGTATATCACTTCT+GGG 0.462799 2_4:-54050127 None:intergenic
GAGATGGGTGGGTTAGGGGA+AGG 0.465818 2_4:+54053538 Msa0334950:three_prime_UTR
GCATGGGATAATAAGTCTTC+CGG 0.467541 2_4:-54050827 None:intergenic
TGCATATATCTCCAAGTTTG+AGG 0.468657 2_4:+54048327 Msa0334950:CDS
AAAATGGTATTTGTAATCGA+TGG 0.468865 2_4:+54052162 Msa0334950:three_prime_UTR
CTTTGAGATGGGTGGGTTAG+GGG 0.469018 2_4:+54053534 Msa0334950:three_prime_UTR
GCATCTTCCTTTGAGATGGG+TGG 0.470249 2_4:+54053526 Msa0334950:three_prime_UTR
CAATGTCAATGTGTTCAACT+TGG 0.470733 2_4:+54053227 Msa0334950:three_prime_UTR
ATGACACACTCTCTCTATGT+AGG 0.472711 2_4:-54047741 None:intergenic
GCCAGTTTACAAACTGAATC+CGG 0.472712 2_4:+54053373 Msa0334950:three_prime_UTR
AACTCTTTAAGTCCTTTGCC+TGG 0.474489 2_4:-54048365 None:intergenic
ACCTGAGTTTGTGGCAGCTA+GGG 0.474996 2_4:+54051856 Msa0334950:three_prime_UTR
GGAAGGGAGTGAGGACTGGA+TGG 0.475177 2_4:+54053555 Msa0334950:three_prime_UTR
CTCTATGTAGGGTGTGGTTG+AGG 0.475189 2_4:-54047729 None:intergenic
TACACCTACCCGAGGTAAAA+GGG 0.477264 2_4:+54051099 Msa0334950:CDS
GGTTATGTTGAATCCAAAAT+GGG 0.478277 2_4:-54053080 None:intergenic
CAATCCCAACGAATGTGCTT+GGG 0.478614 2_4:+54051427 Msa0334950:three_prime_UTR
GCCATGTGACTAGACCTAAC+AGG 0.479850 2_4:-54051644 None:intergenic
GTTCATCACGGAATTATACT+TGG 0.482475 2_4:-54051066 None:intergenic
GTCATTGTTATAAGCATCAC+AGG 0.484486 2_4:-54051189 None:intergenic
CATCTTCCTTTGAGATGGGT+GGG 0.484840 2_4:+54053527 Msa0334950:three_prime_UTR
ATCTTATCTTGATAGAACAT+TGG 0.485673 2_4:-54053830 None:intergenic
ATTATATTTGCAGGTTGTCT+GGG 0.486059 2_4:+54049943 Msa0334950:intron
GACATACCAATCAAAAGAAA+AGG 0.487141 2_4:-54053334 None:intergenic
ACAGTAACATGCCTCAAACT+TGG 0.488081 2_4:-54048338 None:intergenic
GCATGTCAAAATGGTGTTTG+AGG 0.490927 2_4:-54048034 None:intergenic
TAGGCCCAAGCACATTCGTT+GGG 0.491286 2_4:-54051431 None:intergenic
CTTTAAGTCCTTTGCCTGGA+AGG 0.491497 2_4:-54048361 None:intergenic
TGGATGTGGATGTAGCTTTG+AGG 0.491782 2_4:+54053575 Msa0334950:three_prime_UTR
AAGCAATACATATCATCATT+GGG 0.493192 2_4:+54051499 Msa0334950:three_prime_UTR
CATTGATAATGAGTATGAAA+TGG 0.494629 2_4:+54053643 Msa0334950:three_prime_UTR
CTTCTCTAAGGTTGTTGAAA+GGG 0.495706 2_4:+54053483 Msa0334950:three_prime_UTR
ATTGGCAATGATGAACTAAA+GGG 0.496348 2_4:+54050161 Msa0334950:CDS
TAAGTTATGCTGTAAAAGGA+AGG 0.497152 2_4:-54048120 None:intergenic
GGGATATTGAGCAAAAGAAA+AGG 0.497454 2_4:-54052968 None:intergenic
GCAGTTTAGGGGAGGTTCAT+CGG 0.501375 2_4:+54050980 Msa0334950:CDS
ATCTCAACTTCGCCTATAGT+TGG 0.501904 2_4:+54052839 Msa0334950:three_prime_UTR
CATGGCGATATAGATACTCT+TGG 0.502065 2_4:-54050560 None:intergenic
AAGACCACCTTGTTAAGACT+TGG 0.504189 2_4:-54051233 None:intergenic
GACATGAATGGAAAAGTGAA+TGG 0.504634 2_4:+54051308 Msa0334950:three_prime_UTR
TTTGGATTCAACATAACCAC+TGG 0.509160 2_4:+54053085 Msa0334950:three_prime_UTR
TGGAATGTTCTTGTTGAAGA+AGG 0.509369 2_4:-54052899 None:intergenic
CTGTGGGACATTGACATGAA+TGG 0.510723 2_4:+54051296 Msa0334950:three_prime_UTR
GTATTACATTCTACAGAAAA+GGG 0.512040 2_4:+54051538 Msa0334950:three_prime_UTR
GGGATTTCAACCCGAAATCT+GGG 0.514533 2_4:+54053412 Msa0334950:three_prime_UTR
ACCTGCTGTGATTGAGGTCA+AGG 0.515480 2_4:+54050878 Msa0334950:CDS
CACTCTCTCTATGTAGGGTG+TGG 0.517331 2_4:-54047735 None:intergenic
TATGGCATCTTCCTTTGAGA+TGG 0.518876 2_4:+54053522 Msa0334950:three_prime_UTR
CAATGAGAACCAAGCCTGCA+TGG 0.521244 2_4:-54050844 None:intergenic
AAATGGTATTTGTAATCGAT+GGG 0.521496 2_4:+54052163 Msa0334950:three_prime_UTR
CCCGGTCATCGATGACTCGC+CGG 0.521804 2_4:-54053392 None:intergenic
GAGTGAGGACTGGATGGATG+TGG 0.521865 2_4:+54053561 Msa0334950:three_prime_UTR
TGCGAAGTTCATCAAGGGAT+TGG 0.522471 2_4:-54052771 None:intergenic
CCCAAATGCTAAGCAAGGTT+AGG 0.522482 2_4:+54048061 Msa0334950:five_prime_UTR
GGATTGGTGTCGAATGTGAC+AGG 0.523214 2_4:-54052755 None:intergenic
TTATGGGATTGGAGGTAAGA+GGG 0.524110 2_4:-54052988 None:intergenic
ATATCATCATTGGGTTGCAC+AGG 0.526531 2_4:+54051508 Msa0334950:three_prime_UTR
GTTGATGATGTTGAGAATGC+TGG 0.527031 2_4:+54051975 Msa0334950:three_prime_UTR
TAGGAATTGTCAACAAGGGC+AGG 0.527659 2_4:-54050693 None:intergenic
TCCGGCGAGTCATCGATGAC+CGG 0.527988 2_4:+54053391 Msa0334950:three_prime_UTR
AAAGAGACATTGGACTAAGA+AGG 0.531116 2_4:-54047970 None:intergenic
CCATGAAATGCTATCAATCC+AGG 0.531538 2_4:-54051888 None:intergenic
TTGATTTGGAGGCTTGGAGG+AGG 0.533922 2_4:+54051468 Msa0334950:three_prime_UTR
CAACTTCAATTGTTGCGCCA+AGG 0.534098 2_4:+54051669 Msa0334950:three_prime_UTR
AATCTTGAATTCTTCTGATG+TGG 0.534326 2_4:-54053179 None:intergenic
TCCCTAGCTGCCACAAACTC+AGG 0.537117 2_4:-54051857 None:intergenic
ACTGACAATTTAGAACTCTC+TGG 0.544169 2_4:+54053142 Msa0334950:three_prime_UTR
CCGGCGAGTCATCGATGACC+GGG 0.544538 2_4:+54053392 Msa0334950:three_prime_UTR
AACTCGTAGTTGAGAAGTCA+TGG 0.545930 2_4:-54052136 None:intergenic
GCTGGTGTCATCCATTTCAA+TGG 0.546735 2_4:+54051993 Msa0334950:three_prime_UTR
GACCTGAGTTTGTGGCAGCT+AGG 0.547386 2_4:+54051855 Msa0334950:three_prime_UTR
AGAAGAGCATCCTATAAGAA+AGG 0.547606 2_4:-54048415 None:intergenic
CTCTTTCAAACAAAAGGCAA+TGG 0.547735 2_4:-54051602 None:intergenic
GTATGCTGCTTGATGCTACA+TGG 0.547890 2_4:-54050578 None:intergenic
GTAGGGTGTGGTTGAGGACG+TGG 0.548684 2_4:-54047723 None:intergenic
GTAGGCCCAAGCACATTCGT+TGG 0.549124 2_4:-54051432 None:intergenic
GTATATGTCACAATGAATGT+AGG 0.549602 2_4:-54052671 None:intergenic
TGTTAAAGAGAAAGAGACAT+TGG 0.549633 2_4:-54047980 None:intergenic
TTATGGTAGAAGGGGAGCCT+TGG 0.549766 2_4:-54051686 None:intergenic
ACTGTATGATCAACAAATAG+AGG 0.551473 2_4:-54048167 None:intergenic
GTTGTCTGTGTTATCATGGA+AGG 0.551816 2_4:-54052224 None:intergenic
ATGGCATCTTCCTTTGAGAT+GGG 0.551979 2_4:+54053523 Msa0334950:three_prime_UTR
AACTGATCTTACACCTCTGT+GGG 0.552088 2_4:+54051280 Msa0334950:three_prime_UTR
CAGCTAGGGACATTACCTCC+TGG 0.553175 2_4:+54051870 Msa0334950:three_prime_UTR
AGTAACTTTGGTGATCTAAG+TGG 0.553292 2_4:-54053043 None:intergenic
GCTTCTCTAAGGTTGTTGAA+AGG 0.554793 2_4:+54053482 Msa0334950:three_prime_UTR
TGTTATTGCAGCAAAACTAC+AGG 0.556038 2_4:+54051034 Msa0334950:CDS
TGTGCATGTATGCATGATGA+TGG 0.556364 2_4:+54053691 Msa0334950:three_prime_UTR
GGTCGTCTACCCAAAATCCT+TGG 0.557130 2_4:-54049979 None:intergenic
GCCTTGACCTCAATCACAGC+AGG 0.559932 2_4:-54050879 None:intergenic
GTAGCTTTGAGGGGAACAGT+AGG 0.560271 2_4:+54053586 Msa0334950:three_prime_UTR
AGACATACACAATATAAGAC+AGG 0.561353 2_4:-54048276 None:intergenic
CCCTAACCCACCCATCTCAA+AGG 0.566184 2_4:-54053533 None:intergenic
AATCCAAGCATATGCCAGAA+AGG 0.569673 2_4:-54051930 None:intergenic
TAGCTTTGAGGGGAACAGTA+GGG 0.574005 2_4:+54053587 Msa0334950:three_prime_UTR
GTTACTGTCCTTCCAGGCAA+AGG 0.576045 2_4:+54048353 Msa0334950:CDS
CAAAACAAGTGCTCTACCAT+AGG 0.578826 2_4:+54048509 Msa0334950:CDS
TTGTGAAACCTTGAGGACGC+AGG 0.579627 2_4:-54052417 None:intergenic
GAAGACTTATTATCCCATGC+AGG 0.581237 2_4:+54050830 Msa0334950:CDS
AGCAATGGAGAAAGATCAGA+AGG 0.582954 2_4:+54050950 Msa0334950:CDS
TGTGAAATGAAATAAAGAAG+AGG 0.586272 2_4:+54048201 Msa0334950:five_prime_UTR
GAAGTCTGCGAAGTTCATCA+AGG 0.586654 2_4:-54052777 None:intergenic
TATATGTCACAATGAATGTA+GGG 0.586670 2_4:-54052670 None:intergenic
TGACACACTCTCTCTATGTA+GGG 0.587504 2_4:-54047740 None:intergenic
CGGGTAGGTGTATTCGAATG+TGG 0.589143 2_4:-54051088 None:intergenic
TTCATCACGGAATTATACTT+GGG 0.591862 2_4:-54051065 None:intergenic
TGCAACATTAGAGCATGATA+GGG 0.593846 2_4:+54052107 Msa0334950:three_prime_UTR
TGTTCTTGTTGAAGAAGGTG+AGG 0.596063 2_4:-54052894 None:intergenic
TTATTGTATTATGGTAGAAG+GGG 0.597161 2_4:-54051694 None:intergenic
GCCTGTTAGGTCTAGTCACA+TGG 0.598046 2_4:+54051643 Msa0334950:three_prime_UTR
AATGAGAACCAAGCCTGCAT+GGG 0.602294 2_4:-54050843 None:intergenic
ATTAGTTTAGGGTTATTGAG+AGG 0.602575 2_4:+54053460 Msa0334950:three_prime_UTR
TATGGAACAAAGGACTAGGT+TGG 0.602971 2_4:+54050530 Msa0334950:CDS
AGAAGGTGAGGAAATGAAGG+TGG 0.605802 2_4:-54052882 None:intergenic
CCCTTATGGAACAAAGGACT+AGG 0.608232 2_4:+54050526 Msa0334950:CDS
TGTCATCCATTTCAATGGCA+GGG 0.612684 2_4:+54051998 Msa0334950:three_prime_UTR
TATTCGAATGTGGTTCATCA+CGG 0.616086 2_4:-54051078 None:intergenic
ACAACAATGATATGGCATCA+TGG 0.616836 2_4:+54052242 Msa0334950:three_prime_UTR
TGAAGAAGGTGAGGAAATGA+AGG 0.617329 2_4:-54052885 None:intergenic
AAGCTAATTGTGAAACCTTG+AGG 0.617818 2_4:-54052424 None:intergenic
GTGCGGTCGCAGTTTAGGGG+AGG 0.618601 2_4:+54050972 Msa0334950:CDS
ATGTATGCATGATGATGGAT+TGG 0.618691 2_4:+54053696 Msa0334950:three_prime_UTR
AGGTAACCCTTATGGAACAA+AGG 0.619724 2_4:+54050520 Msa0334950:intron
TTCCAGAACTAAGATCATTG+TGG 0.622845 2_4:+54052045 Msa0334950:three_prime_UTR
TCAATGGCAGGGCAAAGCCA+TGG 0.623067 2_4:+54052009 Msa0334950:three_prime_UTR
TGAAATAAAAGAGAGACCAA+AGG 0.623407 2_4:+54052458 Msa0334950:three_prime_UTR
GTTCCGCAGACGGTAGCTGA+AGG 0.623605 2_4:-54050665 None:intergenic
AAGTCTGCGAAGTTCATCAA+GGG 0.623822 2_4:-54052776 None:intergenic
GTTGTTTCCAAGTCTTAACA+AGG 0.625853 2_4:+54051226 Msa0334950:three_prime_UTR
AAACTGATCTTACACCTCTG+TGG 0.626571 2_4:+54051279 Msa0334950:three_prime_UTR
CCTGACCCAAATGCTAAGCA+AGG 0.628392 2_4:+54048056 Msa0334950:five_prime_UTR
ACGCCTTCAGCTACCGTCTG+CGG 0.629379 2_4:+54050662 Msa0334950:CDS
GCAATGATGAACTAAAGGGA+AGG 0.629505 2_4:+54050165 Msa0334950:CDS
GCAGGAACTAGTTCCGCAGA+CGG 0.630003 2_4:-54050675 None:intergenic
AAGGTGCGGTCGCAGTTTAG+GGG 0.630055 2_4:+54050969 Msa0334950:CDS
GGAGCAGTGGAAACATGCAA+TGG 0.639468 2_4:+54051329 Msa0334950:three_prime_UTR
GGCAGCAAGCACATTATCTG+AGG 0.641548 2_4:-54050733 None:intergenic
GTTTCCAAGTCTTAACAAGG+TGG 0.642127 2_4:+54051229 Msa0334950:three_prime_UTR
GAGACATTGGACTAAGAAGG+AGG 0.643791 2_4:-54047967 None:intergenic
GGAAAAGCTATGTCTAGCCA+TGG 0.645591 2_4:-54052026 None:intergenic
ATCATGGAAGGCCTAATGAG+TGG 0.647033 2_4:-54052212 None:intergenic
TGGAAAAGTGAATGGAGCAG+TGG 0.647140 2_4:+54051316 Msa0334950:three_prime_UTR
GGTAATAGGAATTGTCAACA+AGG 0.647228 2_4:-54050698 None:intergenic
TTATACACATAATTACAGAC+CGG 0.653156 2_4:+54050808 Msa0334950:CDS
CAGAGAACAACTTCATACAA+TGG 0.654122 2_4:+54052628 Msa0334950:three_prime_UTR
AATGTCAATGTGTTCAACTT+GGG 0.659171 2_4:+54053228 Msa0334950:three_prime_UTR
GTAATAGGAATTGTCAACAA+GGG 0.660966 2_4:-54050697 None:intergenic
TGGAGAAAGATCAGAAGGTG+CGG 0.665818 2_4:+54050955 Msa0334950:CDS
AGAGAGTTCTAAATTGTCAG+TGG 0.670269 2_4:-54053140 None:intergenic
GCCAGAAAGGATCTATAACG+TGG 0.683226 2_4:-54051917 None:intergenic
TCAAAGTGAAAGTTGCGTCG+AGG 0.683701 2_4:+54048390 Msa0334950:CDS
CAACTGGTTCAACTAATGTG+AGG 0.686416 2_4:-54053878 None:intergenic
GTATCACAATGTCATCGTCG+AGG 0.702865 2_4:-54051256 None:intergenic
GATGTGGATGTAGCTTTGAG+GGG 0.707666 2_4:+54053577 Msa0334950:three_prime_UTR
GAGTGATGTTGCAACAACCG+AGG 0.712252 2_4:-54050754 None:intergenic
TGAAATGCTATCAATCCAGG+AGG 0.724414 2_4:-54051885 None:intergenic
CATTCGAATACACCTACCCG+AGG 0.732448 2_4:+54051091 Msa0334950:CDS
TTCATGTCAATGTCCCACAG+AGG 0.769997 2_4:-54051293 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATTAATTTTAAAATCAAA+AGG - chr2_4:54049251-54049270 None:intergenic 10.0%
!!! TAATGAAAAATTTTATTCTA+TGG - chr2_4:54049531-54049550 None:intergenic 10.0%
!!! TTTTCATTATAAAATAGATA+AGG + chr2_4:54049542-54049561 Msa0334950:intron 10.0%
!!! AGCTTTAATTCTTTTTATTT+TGG - chr2_4:54047681-54047700 None:intergenic 15.0%
!! ACATAAAATTAACTTCTATA+TGG - chr2_4:54047770-54047789 None:intergenic 15.0%
!! TATTACATATATGTAACTTA+AGG - chr2_4:54047870-54047889 None:intergenic 15.0%
!!! TTTTGATATATGTTATTTCA+AGG - chr2_4:54048100-54048119 None:intergenic 15.0%
!!! AATGATTCATATTTTAAACT+CGG + chr2_4:54048644-54048663 Msa0334950:intron 15.0%
!!! TTAATTTTAAAATCAAAAGG+TGG - chr2_4:54049248-54049267 None:intergenic 15.0%
!!! TTTTAAAATTAATGTGACAT+TGG + chr2_4:54049256-54049275 Msa0334950:intron 15.0%
!! ACTGTTAAAATAACTTATAA+TGG - chr2_4:54049736-54049755 None:intergenic 15.0%
!!! AATTTAGATCTATTTTCATA+TGG + chr2_4:54049834-54049853 Msa0334950:intron 15.0%
!!! ATTTTACTTTGATTTACTAT+TGG + chr2_4:54050073-54050092 Msa0334950:intron 15.0%
!!! TGAAATTTTTAGATATTAGA+GGG - chr2_4:54051409-54051428 None:intergenic 15.0%
!!! TTGAAATTTTTAGATATTAG+AGG - chr2_4:54051410-54051429 None:intergenic 15.0%
!! TGGTAATATATGCAAATATA+AGG - chr2_4:54047653-54047672 None:intergenic 20.0%
!!! TATATTGTGTATGTCTATTT+TGG + chr2_4:54048283-54048302 Msa0334950:exon 20.0%
!!! GATGATTCATATTTTAAACT+CGG + chr2_4:54048774-54048793 Msa0334950:intron 20.0%
!!! ATAGTAATTATGTCACATTT+TGG + chr2_4:54048868-54048887 Msa0334950:intron 20.0%
!!! TTTATTGATTTGTTAGAGAT+TGG - chr2_4:54049217-54049236 None:intergenic 20.0%
!! AAGATAATTCATTATATGCA+AGG - chr2_4:54049591-54049610 None:intergenic 20.0%
!!! AACTTGTCTGTATTTTTATA+TGG + chr2_4:54049760-54049779 Msa0334950:intron 20.0%
!! TATCACTCATATTGTTATAT+CGG + chr2_4:54049891-54049910 Msa0334950:intron 20.0%
!! TAACTTCTAATTATATTTGC+AGG + chr2_4:54049934-54049953 Msa0334950:intron 20.0%
!! CACTAGAATTATTTCAAATT+TGG - chr2_4:54050444-54050463 None:intergenic 20.0%
!! ATGATAAATGAACTGTTATT+AGG + chr2_4:54050500-54050519 Msa0334950:intron 20.0%
!! ATGATATGTATTGCTTATAT+TGG - chr2_4:54051495-54051514 None:intergenic 20.0%
!! TTTATTGTATTATGGTAGAA+GGG - chr2_4:54051698-54051717 None:intergenic 20.0%
!! CATTTGTCTTTATTGTATTA+TGG - chr2_4:54051706-54051725 None:intergenic 20.0%
!!! GTAAAATTTTAAAGCAAGAA+AGG - chr2_4:54052269-54052288 None:intergenic 20.0%
!! AGAAACAAAATTCAATGAAA+TGG - chr2_4:54052485-54052504 None:intergenic 20.0%
!!! TTTGATTTCTCATTCAAAAT+TGG + chr2_4:54052604-54052623 Msa0334950:three_prime_UTR 20.0%
!!! GATTGTTTTGTATAATTTGA+TGG - chr2_4:54052822-54052841 None:intergenic 20.0%
!!! GAAGTTGTTTATTCTTTTAT+GGG - chr2_4:54053007-54053026 None:intergenic 20.0%
!!! TGAAGTTGTTTATTCTTTTA+TGG - chr2_4:54053008-54053027 None:intergenic 20.0%
!! CAATTAAGATCTTAATCATT+TGG - chr2_4:54053309-54053328 None:intergenic 20.0%
!! CAAATGATTAAGATCTTAAT+TGG + chr2_4:54053307-54053326 Msa0334950:three_prime_UTR 20.0%
!!! AAATGGTATTGATGTAAATT+TGG + chr2_4:54053660-54053679 Msa0334950:three_prime_UTR 20.0%
!! TATTGATGTAAATTTGGTAT+TGG + chr2_4:54053666-54053685 Msa0334950:three_prime_UTR 20.0%
!!! TTCTTTTTATTTTGGTCTCT+TGG - chr2_4:54047673-54047692 None:intergenic 25.0%
!!! GCTTTTTAGCATATAGTTTT+TGG - chr2_4:54047806-54047825 None:intergenic 25.0%
!! TATGTAACTTAAGGTTTGTT+TGG - chr2_4:54047861-54047880 None:intergenic 25.0%
!! ATTAATTGCCTTGATTTTGA+AGG - chr2_4:54047920-54047939 None:intergenic 25.0%
! ATGTTAAGTTATGCTGTAAA+AGG - chr2_4:54048127-54048146 None:intergenic 25.0%
! TGTGAAATGAAATAAAGAAG+AGG + chr2_4:54048201-54048220 Msa0334950:five_prime_UTR 25.0%
!!! AACCTGTTTGTTTTTTCATT+TGG + chr2_4:54048235-54048254 Msa0334950:five_prime_UTR 25.0%
! AACCAAATGAAAAAACAAAC+AGG - chr2_4:54048240-54048259 None:intergenic 25.0%
! ATCATTTGATCTTCAATCAA+TGG + chr2_4:54048829-54048848 Msa0334950:intron 25.0%
!! AAGTTTTCTATGTATCAAAG+CGG + chr2_4:54048993-54049012 Msa0334950:intron 25.0%
! ACAATTAGAATAGTTACTGT+TGG + chr2_4:54049494-54049513 Msa0334950:intron 25.0%
!!! ATTTAACTTGCTTCAAATTC+TGG + chr2_4:54049649-54049668 Msa0334950:intron 25.0%
! TTAAGTCTTAGCTTCATTAT+AGG - chr2_4:54049816-54049835 None:intergenic 25.0%
!! TTACTTTGATTTACTATTGG+TGG + chr2_4:54050076-54050095 Msa0334950:intron 25.0%
!!! AAATGACATGACTTTTTCAT+AGG + chr2_4:54050103-54050122 Msa0334950:intron 25.0%
!! AAGTTTAACTGCAAATGTTT+TGG - chr2_4:54050252-54050271 None:intergenic 25.0%
!! ATATAGATACTCTTGGATTT+TGG - chr2_4:54050556-54050575 None:intergenic 25.0%
! ATGTGTATAACAACCTTATT+AGG - chr2_4:54050798-54050817 None:intergenic 25.0%
! TTATACACATAATTACAGAC+CGG + chr2_4:54050808-54050827 Msa0334950:CDS 25.0%
!!! CATTTTGATTGGTTTTCAAA+GGG + chr2_4:54050909-54050928 Msa0334950:CDS 25.0%
!!! ATTTTGATTGGTTTTCAAAG+GGG + chr2_4:54050910-54050929 Msa0334950:CDS 25.0%
! TAAGCAATACATATCATCAT+TGG + chr2_4:54051498-54051517 Msa0334950:three_prime_UTR 25.0%
! AAGCAATACATATCATCATT+GGG + chr2_4:54051499-54051518 Msa0334950:three_prime_UTR 25.0%
! TGTATTACATTCTACAGAAA+AGG + chr2_4:54051537-54051556 Msa0334950:three_prime_UTR 25.0%
! GTATTACATTCTACAGAAAA+GGG + chr2_4:54051538-54051557 Msa0334950:three_prime_UTR 25.0%
! TTATTGTATTATGGTAGAAG+GGG - chr2_4:54051697-54051716 None:intergenic 25.0%
! CTTTATTGTATTATGGTAGA+AGG - chr2_4:54051699-54051718 None:intergenic 25.0%
! AAAATGGTATTTGTAATCGA+TGG + chr2_4:54052162-54052181 Msa0334950:three_prime_UTR 25.0%
! AAATGGTATTTGTAATCGAT+GGG + chr2_4:54052163-54052182 Msa0334950:three_prime_UTR 25.0%
!! TGTTTTATCTTGCAATTACA+TGG + chr2_4:54052504-54052523 Msa0334950:three_prime_UTR 25.0%
! GAGAAATCAAATTACTTTCA+AGG - chr2_4:54052595-54052614 None:intergenic 25.0%
! TATATGTCACAATGAATGTA+GGG - chr2_4:54052673-54052692 None:intergenic 25.0%
!! TGTTTATTCTTTTATGGGAT+TGG - chr2_4:54053002-54053021 None:intergenic 25.0%
!!! TTGATTTTGCCTATTAGTTT+AGG + chr2_4:54053448-54053467 Msa0334950:three_prime_UTR 25.0%
!!! TGATTTTGCCTATTAGTTTA+GGG + chr2_4:54053449-54053468 Msa0334950:three_prime_UTR 25.0%
!!! CATTGATAATGAGTATGAAA+TGG + chr2_4:54053643-54053662 Msa0334950:three_prime_UTR 25.0%
! TCTTATCTTGATAGAACATT+GGG - chr2_4:54053832-54053851 None:intergenic 25.0%
! ATCTTATCTTGATAGAACAT+TGG - chr2_4:54053833-54053852 None:intergenic 25.0%
!!! AGCATATAGTTTTTGGAGTT+TGG - chr2_4:54047799-54047818 None:intergenic 30.0%
TGTTAAAGAGAAAGAGACAT+TGG - chr2_4:54047983-54048002 None:intergenic 30.0%
TAAGTTATGCTGTAAAAGGA+AGG - chr2_4:54048123-54048142 None:intergenic 30.0%
ACTGTATGATCAACAAATAG+AGG - chr2_4:54048170-54048189 None:intergenic 30.0%
AGACATACACAATATAAGAC+AGG - chr2_4:54048279-54048298 None:intergenic 30.0%
!! TGTGTATGTCTATTTTGGAT+TGG + chr2_4:54048288-54048307 Msa0334950:exon 30.0%
TACGCATAATATGAATTCTC+AGG + chr2_4:54048685-54048704 Msa0334950:intron 30.0%
TGTTGGAAATAGATTCCTTA+GGG - chr2_4:54048894-54048913 None:intergenic 30.0%
ATGTTGGAAATAGATTCCTT+AGG - chr2_4:54048895-54048914 None:intergenic 30.0%
ACTGCATGATCTATAATCAA+CGG - chr2_4:54049075-54049094 None:intergenic 30.0%
AATTATATTTGCAGGTTGTC+TGG + chr2_4:54049942-54049961 Msa0334950:intron 30.0%
ATTATATTTGCAGGTTGTCT+GGG + chr2_4:54049943-54049962 Msa0334950:intron 30.0%
GTTGTCTGGGAAAAAAATTA+GGG + chr2_4:54049956-54049975 Msa0334950:CDS 30.0%
! TAAGAGTTTACAGTTGATTC+AGG - chr2_4:54050003-54050022 None:intergenic 30.0%
AAGTTTGGTATATCACTTCT+GGG - chr2_4:54050130-54050149 None:intergenic 30.0%
AAAGTTTGGTATATCACTTC+TGG - chr2_4:54050131-54050150 None:intergenic 30.0%
! CAATTGGTTCATCTAAAGTT+TGG - chr2_4:54050145-54050164 None:intergenic 30.0%
CAAACTTTAGATGAACCAAT+TGG + chr2_4:54050143-54050162 Msa0334950:CDS 30.0%
! TTTAGTTCATCATTGCCAAT+TGG - chr2_4:54050161-54050180 None:intergenic 30.0%
AATTGGCAATGATGAACTAA+AGG + chr2_4:54050160-54050179 Msa0334950:CDS 30.0%
ATTGGCAATGATGAACTAAA+GGG + chr2_4:54050161-54050180 Msa0334950:CDS 30.0%
!! ATGAACTCTTCTAAAGTTTG+TGG - chr2_4:54050200-54050219 None:intergenic 30.0%
! ACAAACTTTAGAAGAGTTCA+TGG + chr2_4:54050199-54050218 Msa0334950:CDS 30.0%
AGAGTTCATGGTTAAAATGA+AGG + chr2_4:54050211-54050230 Msa0334950:intron 30.0%
TTCATGGTTAAAATGAAGGA+AGG + chr2_4:54050215-54050234 Msa0334950:intron 30.0%
TGCAGTTAAACTTAGAGAAA+TGG + chr2_4:54050259-54050278 Msa0334950:intron 30.0%
ACTGTACAATTTCAATCCAA+CGG - chr2_4:54050356-54050375 None:intergenic 30.0%
! TTTGAGACTTCAACTTGAAA+AGG - chr2_4:54050478-54050497 None:intergenic 30.0%
TCAAGACAATGAAGTTGTTT+CGG - chr2_4:54050603-54050622 None:intergenic 30.0%
GTAATAGGAATTGTCAACAA+GGG - chr2_4:54050700-54050719 None:intergenic 30.0%
GGCTAAAACAAAATGGTAAT+AGG - chr2_4:54050715-54050734 None:intergenic 30.0%
! TATCTGAGGCTAAAACAAAA+TGG - chr2_4:54050722-54050741 None:intergenic 30.0%
TAACTGTTTACGACCTAATA+AGG + chr2_4:54050782-54050801 Msa0334950:CDS 30.0%
! CCTTTGAAAACCAATCAAAA+TGG - chr2_4:54050911-54050930 None:intergenic 30.0%
!!! CCATTTTGATTGGTTTTCAA+AGG + chr2_4:54050908-54050927 Msa0334950:CDS 30.0%
! AGTTTTGCTGCAATAACATT+TGG - chr2_4:54051032-54051051 None:intergenic 30.0%
TTCATCACGGAATTATACTT+GGG - chr2_4:54051068-54051087 None:intergenic 30.0%
CAGGCACAAAAACATTTATT+TGG - chr2_4:54051173-54051192 None:intergenic 30.0%
ACAAGTTTGTGATGTCAAAA+AGG + chr2_4:54051357-54051376 Msa0334950:three_prime_UTR 30.0%
!!! CATGAACATTTTTGATTTGG+AGG + chr2_4:54051457-54051476 Msa0334950:three_prime_UTR 30.0%
!! CTTATGAGCTATCACTTTTA+TGG - chr2_4:54051788-54051807 None:intergenic 30.0%
TCAACTACGAGTTACAAAAA+TGG + chr2_4:54052146-54052165 Msa0334950:three_prime_UTR 30.0%
TAACACAGACAACAATGATA+TGG + chr2_4:54052234-54052253 Msa0334950:three_prime_UTR 30.0%
TGAAATAAAAGAGAGACCAA+AGG + chr2_4:54052458-54052477 Msa0334950:three_prime_UTR 30.0%
AATTCAATGAAATGGTCCTT+TGG - chr2_4:54052477-54052496 None:intergenic 30.0%
GTATATGTCACAATGAATGT+AGG - chr2_4:54052674-54052693 None:intergenic 30.0%
!!! TTTTTAAGTGTGTGAGAGAT+GGG - chr2_4:54052943-54052962 None:intergenic 30.0%
!!! ATTTTTAAGTGTGTGAGAGA+TGG - chr2_4:54052944-54052963 None:intergenic 30.0%
! TTATTCTTTTATGGGATTGG+AGG - chr2_4:54052999-54053018 None:intergenic 30.0%
GGTTATGTTGAATCCAAAAT+GGG - chr2_4:54053083-54053102 None:intergenic 30.0%
TGGTTATGTTGAATCCAAAA+TGG - chr2_4:54053084-54053103 None:intergenic 30.0%
TAAATTGTCAGTGGTGAAAA+TGG - chr2_4:54053134-54053153 None:intergenic 30.0%
AATCTTGAATTCTTCTGATG+TGG - chr2_4:54053182-54053201 None:intergenic 30.0%
TCAGAAGAATTCAAGATTCT+TGG + chr2_4:54053184-54053203 Msa0334950:three_prime_UTR 30.0%
CAGAAGAATTCAAGATTCTT+GGG + chr2_4:54053185-54053204 Msa0334950:three_prime_UTR 30.0%
AATGTCAATGTGTTCAACTT+GGG + chr2_4:54053228-54053247 Msa0334950:three_prime_UTR 30.0%
!!! ATTGCAGCTTTTTTTAAGCT+AGG + chr2_4:54053277-54053296 Msa0334950:three_prime_UTR 30.0%
!!! GCTTTTTTTAAGCTAGGATT+AGG + chr2_4:54053283-54053302 Msa0334950:three_prime_UTR 30.0%
GACATACCAATCAAAAGAAA+AGG - chr2_4:54053337-54053356 None:intergenic 30.0%
!! AACTGGCTCTTGATATTTTT+GGG - chr2_4:54053360-54053379 None:intergenic 30.0%
!! AAACTGGCTCTTGATATTTT+TGG - chr2_4:54053361-54053380 None:intergenic 30.0%
CTCAATAACCCTAAACTAAT+AGG - chr2_4:54053460-54053479 None:intergenic 30.0%
! ATTAGTTTAGGGTTATTGAG+AGG + chr2_4:54053460-54053479 Msa0334950:three_prime_UTR 30.0%
!!! TGATGATGGATTGGAAATTT+TGG + chr2_4:54053705-54053724 Msa0334950:three_prime_UTR 30.0%
! TAGAATGATGATGCCATTTA+AGG + chr2_4:54053754-54053773 Msa0334950:three_prime_UTR 30.0%
! CCTCTGTTTAAAACCTTAAA+TGG - chr2_4:54053770-54053789 None:intergenic 30.0%
!!! CCATTTAAGGTTTTAAACAG+AGG + chr2_4:54053767-54053786 Msa0334950:three_prime_UTR 30.0%
TGCTAAAAAGCTTCATGTTG+AGG + chr2_4:54047815-54047834 Msa0334950:five_prime_UTR 35.0%
!! TTGTTTGGTGTATCTATGCT+TGG - chr2_4:54047846-54047865 None:intergenic 35.0%
! TTTTCCCTCCTTCAAAATCA+AGG + chr2_4:54047909-54047928 Msa0334950:five_prime_UTR 35.0%
!! ATTGCCTTGATTTTGAAGGA+GGG - chr2_4:54047916-54047935 None:intergenic 35.0%
!! AATTGCCTTGATTTTGAAGG+AGG - chr2_4:54047917-54047936 None:intergenic 35.0%
AAAGAGACATTGGACTAAGA+AGG - chr2_4:54047973-54047992 None:intergenic 35.0%
TGCATATATCTCCAAGTTTG+AGG + chr2_4:54048327-54048346 Msa0334950:CDS 35.0%
!! AGAAGAGCATCCTATAAGAA+AGG - chr2_4:54048418-54048437 None:intergenic 35.0%
!! TGTTCTTCACTTTTCTTCTG+AGG + chr2_4:54048447-54048466 Msa0334950:CDS 35.0%
!!! TGTGTTTGTTTTAACAGCTG+TGG + chr2_4:54048472-54048491 Msa0334950:CDS 35.0%
!!! TTTGTTTTAACAGCTGTGGA+TGG + chr2_4:54048476-54048495 Msa0334950:CDS 35.0%
AAGCGAGATATTGTGACTAA+AGG - chr2_4:54048595-54048614 None:intergenic 35.0%
TGATTACGCAGTTAGAAAGA+AGG + chr2_4:54048728-54048747 Msa0334950:intron 35.0%
GAAAAATGTGAAGGTGGATA+AGG + chr2_4:54048967-54048986 Msa0334950:intron 35.0%
TTTAACCGCACGATCTAAAT+CGG + chr2_4:54049131-54049150 Msa0334950:intron 35.0%
TCTGTTATTACAGATTCACC+TGG - chr2_4:54049393-54049412 None:intergenic 35.0%
GGTTGTCTGGGAAAAAAATT+AGG + chr2_4:54049955-54049974 Msa0334950:intron 35.0%
! AAAATTAGGGCCAAGGATTT+TGG + chr2_4:54049969-54049988 Msa0334950:CDS 35.0%
! AAATTAGGGCCAAGGATTTT+GGG + chr2_4:54049970-54049989 Msa0334950:CDS 35.0%
ATGGTTAAAATGAAGGAAGG+TGG + chr2_4:54050218-54050237 Msa0334950:intron 35.0%
TTGTACAGTTCTCAATCCAA+CGG + chr2_4:54050367-54050386 Msa0334950:intron 35.0%
CTGTTATTAGGTAACCCTTA+TGG + chr2_4:54050512-54050531 Msa0334950:intron 35.0%
GGTAATAGGAATTGTCAACA+AGG - chr2_4:54050701-54050720 None:intergenic 35.0%
!! TTCTCCATTGCTTCTAAAAC+AGG - chr2_4:54050942-54050961 None:intergenic 35.0%
TGTTATTGCAGCAAAACTAC+AGG + chr2_4:54051034-54051053 Msa0334950:CDS 35.0%
GTTCATCACGGAATTATACT+TGG - chr2_4:54051069-54051088 None:intergenic 35.0%
TATTCGAATGTGGTTCATCA+CGG - chr2_4:54051081-54051100 None:intergenic 35.0%
GTCATTGTTATAAGCATCAC+AGG - chr2_4:54051192-54051211 None:intergenic 35.0%
! GTTGTTTCCAAGTCTTAACA+AGG + chr2_4:54051226-54051245 Msa0334950:three_prime_UTR 35.0%
GACATGAATGGAAAAGTGAA+TGG + chr2_4:54051308-54051327 Msa0334950:three_prime_UTR 35.0%
ATCAAAAATGTTCATGCCGT+AGG - chr2_4:54051453-54051472 None:intergenic 35.0%
!! CGGCATGAACATTTTTGATT+TGG + chr2_4:54051454-54051473 Msa0334950:three_prime_UTR 35.0%
!!! ACATTTTTGATTTGGAGGCT+TGG + chr2_4:54051462-54051481 Msa0334950:three_prime_UTR 35.0%
CTCTTTCAAACAAAAGGCAA+TGG - chr2_4:54051605-54051624 None:intergenic 35.0%
ACCAAGCTCTTTCAAACAAA+AGG - chr2_4:54051611-54051630 None:intergenic 35.0%
TTAAATCAGACCTGAGTTTG+TGG + chr2_4:54051847-54051866 Msa0334950:three_prime_UTR 35.0%
TTCCAGAACTAAGATCATTG+TGG + chr2_4:54052045-54052064 Msa0334950:three_prime_UTR 35.0%
TGCAACATTAGAGCATGATA+GGG + chr2_4:54052107-54052126 Msa0334950:three_prime_UTR 35.0%
TAGTTCTTCTTCCACTCATT+AGG + chr2_4:54052201-54052220 Msa0334950:three_prime_UTR 35.0%
CATTGTTGTCTGTGTTATCA+TGG - chr2_4:54052231-54052250 None:intergenic 35.0%
ACAACAATGATATGGCATCA+TGG + chr2_4:54052242-54052261 Msa0334950:three_prime_UTR 35.0%
AAGCTAATTGTGAAACCTTG+AGG - chr2_4:54052427-54052446 None:intergenic 35.0%
CAGAGAACAACTTCATACAA+TGG + chr2_4:54052628-54052647 Msa0334950:three_prime_UTR 35.0%
AACTGATGAACTGATCTTCA+AGG - chr2_4:54052712-54052731 None:intergenic 35.0%
TGTGACAGGCAAAAAGTAAT+TGG - chr2_4:54052744-54052763 None:intergenic 35.0%
TGGTTTCTTCATTCAAGGTT+AGG - chr2_4:54052865-54052884 None:intergenic 35.0%
TGGAATGTTCTTGTTGAAGA+AGG - chr2_4:54052902-54052921 None:intergenic 35.0%
!! TTTTAAGTGTGTGAGAGATG+GGG - chr2_4:54052942-54052961 None:intergenic 35.0%
GGGATATTGAGCAAAAGAAA+AGG - chr2_4:54052971-54052990 None:intergenic 35.0%
! AGTAACTTTGGTGATCTAAG+TGG - chr2_4:54053046-54053065 None:intergenic 35.0%
TTTGAGGAAGAGAGTAACTT+TGG - chr2_4:54053058-54053077 None:intergenic 35.0%
TTTGGATTCAACATAACCAC+TGG + chr2_4:54053085-54053104 Msa0334950:three_prime_UTR 35.0%
!! AGAGAGTTCTAAATTGTCAG+TGG - chr2_4:54053143-54053162 None:intergenic 35.0%
! ACTGACAATTTAGAACTCTC+TGG + chr2_4:54053142-54053161 Msa0334950:three_prime_UTR 35.0%
CAATGTCAATGTGTTCAACT+TGG + chr2_4:54053227-54053246 Msa0334950:three_prime_UTR 35.0%
! GGAGAACCTTTTCTTTTGAT+TGG + chr2_4:54053328-54053347 Msa0334950:three_prime_UTR 35.0%
!! ACTGGCTCTTGATATTTTTG+GGG - chr2_4:54053359-54053378 None:intergenic 35.0%
!! CTTCTCTAAGGTTGTTGAAA+GGG + chr2_4:54053483-54053502 Msa0334950:three_prime_UTR 35.0%
TTTGAGGGATGCATGATATA+TGG + chr2_4:54053611-54053630 Msa0334950:three_prime_UTR 35.0%
!! ATGTATGCATGATGATGGAT+TGG + chr2_4:54053696-54053715 Msa0334950:three_prime_UTR 35.0%
GGTACTTGGAGTGAAAATTC+AGG - chr2_4:54047705-54047724 None:intergenic 40.0%
TGACACACTCTCTCTATGTA+GGG - chr2_4:54047743-54047762 None:intergenic 40.0%
ATGACACACTCTCTCTATGT+AGG - chr2_4:54047744-54047763 None:intergenic 40.0%
AAGAAGGAGGAGATGTTGTT+TGG - chr2_4:54047957-54047976 None:intergenic 40.0%
GCATGTCAAAATGGTGTTTG+AGG - chr2_4:54048037-54048056 None:intergenic 40.0%
CCTAACCTTGCTTAGCATTT+GGG - chr2_4:54048064-54048083 None:intergenic 40.0%
ACCTAACCTTGCTTAGCATT+TGG - chr2_4:54048065-54048084 None:intergenic 40.0%
ACAGTAACATGCCTCAAACT+TGG - chr2_4:54048341-54048360 None:intergenic 40.0%
AACTCTTTAAGTCCTTTGCC+TGG - chr2_4:54048368-54048387 None:intergenic 40.0%
CAAAACAAGTGCTCTACCAT+AGG + chr2_4:54048509-54048528 Msa0334950:CDS 40.0%
!! GAAAAGAGGAAGAGTACCTA+TGG - chr2_4:54048528-54048547 None:intergenic 40.0%
!! TATGTCACATTTTGGCCCTA+AGG + chr2_4:54048876-54048895 Msa0334950:intron 40.0%
TGCAGCAAGGAAAAATGTGA+AGG + chr2_4:54048958-54048977 Msa0334950:intron 40.0%
AGCAAGGAAAAATGTGAAGG+TGG + chr2_4:54048961-54048980 Msa0334950:intron 40.0%
ACCAAAACGTGACGAAGTTT+GGG - chr2_4:54049863-54049882 None:intergenic 40.0%
AACCAAAACGTGACGAAGTT+TGG - chr2_4:54049864-54049883 None:intergenic 40.0%
TGGGAAAAAAATTAGGGCCA+AGG + chr2_4:54049962-54049981 Msa0334950:CDS 40.0%
GCAATGATGAACTAAAGGGA+AGG + chr2_4:54050165-54050184 Msa0334950:CDS 40.0%
ACCAATAGCACGAATTCAAG+CGG - chr2_4:54050408-54050427 None:intergenic 40.0%
AGGTAACCCTTATGGAACAA+AGG + chr2_4:54050520-54050539 Msa0334950:intron 40.0%
CCTAGTCCTTTGTTCCATAA+GGG - chr2_4:54050529-54050548 None:intergenic 40.0%
ACCTAGTCCTTTGTTCCATA+AGG - chr2_4:54050530-54050549 None:intergenic 40.0%
TATGGAACAAAGGACTAGGT+TGG + chr2_4:54050530-54050549 Msa0334950:CDS 40.0%
CATGGCGATATAGATACTCT+TGG - chr2_4:54050563-54050582 None:intergenic 40.0%
GCATGGGATAATAAGTCTTC+CGG - chr2_4:54050830-54050849 None:intergenic 40.0%
GAAGACTTATTATCCCATGC+AGG + chr2_4:54050830-54050849 Msa0334950:CDS 40.0%
TCAATCACAGCAGGTGATAA+AGG - chr2_4:54050873-54050892 None:intergenic 40.0%
TTTATCACCTGCTGTGATTG+AGG + chr2_4:54050872-54050891 Msa0334950:CDS 40.0%
!! AGGCATTGCACCATTTTGAT+TGG + chr2_4:54050898-54050917 Msa0334950:CDS 40.0%
!!! TGATTGGTTTTCAAAGGGGA+AGG + chr2_4:54050914-54050933 Msa0334950:CDS 40.0%
AGCAATGGAGAAAGATCAGA+AGG + chr2_4:54050950-54050969 Msa0334950:CDS 40.0%
GTTTCCAAGTCTTAACAAGG+TGG + chr2_4:54051229-54051248 Msa0334950:three_prime_UTR 40.0%
AAGACCACCTTGTTAAGACT+TGG - chr2_4:54051236-54051255 None:intergenic 40.0%
AAACTGATCTTACACCTCTG+TGG + chr2_4:54051279-54051298 Msa0334950:three_prime_UTR 40.0%
AACTGATCTTACACCTCTGT+GGG + chr2_4:54051280-54051299 Msa0334950:three_prime_UTR 40.0%
!!! TTTTTGATTTGGAGGCTTGG+AGG + chr2_4:54051465-54051484 Msa0334950:three_prime_UTR 40.0%
! ATATCATCATTGGGTTGCAC+AGG + chr2_4:54051508-54051527 Msa0334950:three_prime_UTR 40.0%
!! GCCTTTTGTTTGAAAGAGCT+TGG + chr2_4:54051607-54051626 Msa0334950:three_prime_UTR 40.0%
TGAAATGCTATCAATCCAGG+AGG - chr2_4:54051888-54051907 None:intergenic 40.0%
CCATGAAATGCTATCAATCC+AGG - chr2_4:54051891-54051910 None:intergenic 40.0%
! CCTGGATTGATAGCATTTCA+TGG + chr2_4:54051888-54051907 Msa0334950:three_prime_UTR 40.0%
TCCACGTTATAGATCCTTTC+TGG + chr2_4:54051916-54051935 Msa0334950:three_prime_UTR 40.0%
AATCCAAGCATATGCCAGAA+AGG - chr2_4:54051933-54051952 None:intergenic 40.0%
! TTTCTGGCATATGCTTGGAT+TGG + chr2_4:54051932-54051951 Msa0334950:three_prime_UTR 40.0%
TTCTGGCATATGCTTGGATT+GGG + chr2_4:54051933-54051952 Msa0334950:three_prime_UTR 40.0%
! TATGCTTGGATTGGGATATC+AGG + chr2_4:54051941-54051960 Msa0334950:three_prime_UTR 40.0%
!! GTTGATGATGTTGAGAATGC+TGG + chr2_4:54051975-54051994 Msa0334950:three_prime_UTR 40.0%
TGTCATCCATTTCAATGGCA+GGG + chr2_4:54051998-54052017 Msa0334950:three_prime_UTR 40.0%
GTCCACAATGATCTTAGTTC+TGG - chr2_4:54052050-54052069 None:intergenic 40.0%
CTGCAACATTAGAGCATGAT+AGG + chr2_4:54052106-54052125 Msa0334950:three_prime_UTR 40.0%
AACTCGTAGTTGAGAAGTCA+TGG - chr2_4:54052139-54052158 None:intergenic 40.0%
GTTGTCTGTGTTATCATGGA+AGG - chr2_4:54052227-54052246 None:intergenic 40.0%
TAAAAAAACCTGCGTCCTCA+AGG + chr2_4:54052409-54052428 Msa0334950:three_prime_UTR 40.0%
AAGTCTGCGAAGTTCATCAA+GGG - chr2_4:54052779-54052798 None:intergenic 40.0%
AACTTCGCAGACTTCGTTAT+CGG + chr2_4:54052785-54052804 Msa0334950:three_prime_UTR 40.0%
ATCTCAACTTCGCCTATAGT+TGG + chr2_4:54052839-54052858 Msa0334950:three_prime_UTR 40.0%
TTCAAGGTTAGGCCAACTAT+AGG - chr2_4:54052854-54052873 None:intergenic 40.0%
GAAGGTGGTTTCTTCATTCA+AGG - chr2_4:54052870-54052889 None:intergenic 40.0%
TGAAGAAGGTGAGGAAATGA+AGG - chr2_4:54052888-54052907 None:intergenic 40.0%
TGTTCTTGTTGAAGAAGGTG+AGG - chr2_4:54052897-54052916 None:intergenic 40.0%
TTATGGGATTGGAGGTAAGA+GGG - chr2_4:54052991-54053010 None:intergenic 40.0%
TTTATGGGATTGGAGGTAAG+AGG - chr2_4:54052992-54053011 None:intergenic 40.0%
! TCTTCCTCAAATGCCCATTT+TGG + chr2_4:54053067-54053086 Msa0334950:three_prime_UTR 40.0%
GAATCCAAAATGGGCATTTG+AGG - chr2_4:54053074-54053093 None:intergenic 40.0%
!! TTCAACATAACCACTGGCTT+TGG + chr2_4:54053091-54053110 Msa0334950:three_prime_UTR 40.0%
! TGCTTTTAATCCAAAGCCAG+TGG - chr2_4:54053104-54053123 None:intergenic 40.0%
! TTCTGATGTGGCAGTGTTTT+TGG - chr2_4:54053170-54053189 None:intergenic 40.0%
GCCAGTTTACAAACTGAATC+CGG + chr2_4:54053373-54053392 Msa0334950:three_prime_UTR 40.0%
AACTGAAGCAACCCAGATTT+CGG - chr2_4:54053426-54053445 None:intergenic 40.0%
GTTATTGAGAGGCTTCTCTA+AGG + chr2_4:54053471-54053490 Msa0334950:three_prime_UTR 40.0%
!! GCTTCTCTAAGGTTGTTGAA+AGG + chr2_4:54053482-54053501 Msa0334950:three_prime_UTR 40.0%
! GGTTGTTGAAAGGGATGTTT+TGG + chr2_4:54053492-54053511 Msa0334950:three_prime_UTR 40.0%
!!! GGATGTTTTGGCTTGAAGTA+TGG + chr2_4:54053504-54053523 Msa0334950:three_prime_UTR 40.0%
! TATGGCATCTTCCTTTGAGA+TGG + chr2_4:54053522-54053541 Msa0334950:three_prime_UTR 40.0%
!! ATGGCATCTTCCTTTGAGAT+GGG + chr2_4:54053523-54053542 Msa0334950:three_prime_UTR 40.0%
TGTGCATGTATGCATGATGA+TGG + chr2_4:54053691-54053710 Msa0334950:three_prime_UTR 40.0%
GAGACATTGGACTAAGAAGG+AGG - chr2_4:54047970-54047989 None:intergenic 45.0%
TTGGGTCAGGCATGTCAAAA+TGG - chr2_4:54048046-54048065 None:intergenic 45.0%
CCCAAATGCTAAGCAAGGTT+AGG + chr2_4:54048061-54048080 Msa0334950:five_prime_UTR 45.0%
CTTTAAGTCCTTTGCCTGGA+AGG - chr2_4:54048364-54048383 None:intergenic 45.0%
TCAAAGTGAAAGTTGCGTCG+AGG + chr2_4:54048390-54048409 Msa0334950:CDS 45.0%
GCTTGTGACTCTGTCTATGT+TGG - chr2_4:54048911-54048930 None:intergenic 45.0%
ACACATGTGTACACTAGAGC+AGG + chr2_4:54048935-54048954 Msa0334950:intron 45.0%
!!! CAGCGCGCTTTTTTACAACA+GGG - chr2_4:54049028-54049047 None:intergenic 45.0%
!!! ACAGCGCGCTTTTTTACAAC+AGG - chr2_4:54049029-54049048 None:intergenic 45.0%
AACATTCCTGCTGTTACAGC+AGG - chr2_4:54049180-54049199 None:intergenic 45.0%
ACCTTGTAGTAGCAGGATGA+GGG - chr2_4:54049370-54049389 None:intergenic 45.0%
! TCCCAAACTTCGTCACGTTT+TGG + chr2_4:54049859-54049878 Msa0334950:intron 45.0%
ATCAGCACATTTGTGACCGT+TGG + chr2_4:54050337-54050356 Msa0334950:intron 45.0%
AATTCAAGCGGTCAGCACAT+CGG - chr2_4:54050396-54050415 None:intergenic 45.0%
ACCGCTTGAATTCGTGCTAT+TGG + chr2_4:54050404-54050423 Msa0334950:intron 45.0%
CCCTTATGGAACAAAGGACT+AGG + chr2_4:54050526-54050545 Msa0334950:CDS 45.0%
! GTATGCTGCTTGATGCTACA+TGG - chr2_4:54050581-54050600 None:intergenic 45.0%
TAGGAATTGTCAACAAGGGC+AGG - chr2_4:54050696-54050715 None:intergenic 45.0%
! AGATAATGTGCTTGCTGCCT+CGG + chr2_4:54050737-54050756 Msa0334950:CDS 45.0%
CTTATTATCCCATGCAGGCT+TGG + chr2_4:54050835-54050854 Msa0334950:CDS 45.0%
AATGAGAACCAAGCCTGCAT+GGG - chr2_4:54050846-54050865 None:intergenic 45.0%
!!! GGTGCCTGTTTTAGAAGCAA+TGG + chr2_4:54050935-54050954 Msa0334950:CDS 45.0%
TGGAGAAAGATCAGAAGGTG+CGG + chr2_4:54050955-54050974 Msa0334950:CDS 45.0%
ATACACCTACCCGAGGTAAA+AGG + chr2_4:54051098-54051117 Msa0334950:CDS 45.0%
TACACCTACCCGAGGTAAAA+GGG + chr2_4:54051099-54051118 Msa0334950:CDS 45.0%
! CTAGCTATCCCTTTTACCTC+GGG - chr2_4:54051110-54051129 None:intergenic 45.0%
! GCTAGCTATCCCTTTTACCT+CGG - chr2_4:54051111-54051130 None:intergenic 45.0%
GTATCACAATGTCATCGTCG+AGG - chr2_4:54051259-54051278 None:intergenic 45.0%
TTCATGTCAATGTCCCACAG+AGG - chr2_4:54051296-54051315 None:intergenic 45.0%
CTGTGGGACATTGACATGAA+TGG + chr2_4:54051296-54051315 Msa0334950:three_prime_UTR 45.0%
TGGAAAAGTGAATGGAGCAG+TGG + chr2_4:54051316-54051335 Msa0334950:three_prime_UTR 45.0%
TCAATCCCAACGAATGTGCT+TGG + chr2_4:54051426-54051445 Msa0334950:three_prime_UTR 45.0%
CAATCCCAACGAATGTGCTT+GGG + chr2_4:54051427-54051446 Msa0334950:three_prime_UTR 45.0%
CAACTTCAATTGTTGCGCCA+AGG + chr2_4:54051669-54051688 Msa0334950:three_prime_UTR 45.0%
GCCAGAAAGGATCTATAACG+TGG - chr2_4:54051920-54051939 None:intergenic 45.0%
! GATCCTTTCTGGCATATGCT+TGG + chr2_4:54051927-54051946 Msa0334950:three_prime_UTR 45.0%
!! GCTGGTGTCATCCATTTCAA+TGG + chr2_4:54051993-54052012 Msa0334950:three_prime_UTR 45.0%
GTGTCATCCATTTCAATGGC+AGG + chr2_4:54051997-54052016 Msa0334950:three_prime_UTR 45.0%
GGAAAAGCTATGTCTAGCCA+TGG - chr2_4:54052029-54052048 None:intergenic 45.0%
ATCATGGAAGGCCTAATGAG+TGG - chr2_4:54052215-54052234 None:intergenic 45.0%
TGCGAAGTTCATCAAGGGAT+TGG - chr2_4:54052774-54052793 None:intergenic 45.0%
GAAGTCTGCGAAGTTCATCA+AGG - chr2_4:54052780-54052799 None:intergenic 45.0%
AGAAGGTGAGGAAATGAAGG+TGG - chr2_4:54052885-54052904 None:intergenic 45.0%
GCCGGATTCAGTTTGTAAAC+TGG - chr2_4:54053377-54053396 None:intergenic 45.0%
!! CAGATTTCGGGTTGAAATCC+CGG - chr2_4:54053413-54053432 None:intergenic 45.0%
GGGATTTCAACCCGAAATCT+GGG + chr2_4:54053412-54053431 Msa0334950:three_prime_UTR 45.0%
ACTGAAGCAACCCAGATTTC+GGG - chr2_4:54053425-54053444 None:intergenic 45.0%
!! CATCTTCCTTTGAGATGGGT+GGG + chr2_4:54053527-54053546 Msa0334950:three_prime_UTR 45.0%
! TGGATGTGGATGTAGCTTTG+AGG + chr2_4:54053575-54053594 Msa0334950:three_prime_UTR 45.0%
!! GGATGTGGATGTAGCTTTGA+GGG + chr2_4:54053576-54053595 Msa0334950:three_prime_UTR 45.0%
!! GATGTGGATGTAGCTTTGAG+GGG + chr2_4:54053577-54053596 Msa0334950:three_prime_UTR 45.0%
!! TAGCTTTGAGGGGAACAGTA+GGG + chr2_4:54053587-54053606 Msa0334950:three_prime_UTR 45.0%
!!! ATATATTTTTATTTTTTGAA+GGG - chr2_4:54048007-54048026 None:intergenic 5.0%
!!! AATATATTTTTATTTTTTGA+AGG - chr2_4:54048008-54048027 None:intergenic 5.0%
!! AATTGAAAAATTTAATAAAA+TGG - chr2_4:54050053-54050072 None:intergenic 5.0%
CTCTATGTAGGGTGTGGTTG+AGG - chr2_4:54047732-54047751 None:intergenic 50.0%
CACTCTCTCTATGTAGGGTG+TGG - chr2_4:54047738-54047757 None:intergenic 50.0%
CCTTGCTTAGCATTTGGGTC+AGG - chr2_4:54048059-54048078 None:intergenic 50.0%
CCTGACCCAAATGCTAAGCA+AGG + chr2_4:54048056-54048075 Msa0334950:five_prime_UTR 50.0%
AGGCATGTTACTGTCCTTCC+AGG + chr2_4:54048347-54048366 Msa0334950:CDS 50.0%
GTTACTGTCCTTCCAGGCAA+AGG + chr2_4:54048353-54048372 Msa0334950:CDS 50.0%
GCGTGTGTGAGAGAGAAAAG+AGG - chr2_4:54048542-54048561 None:intergenic 50.0%
ACGGCTGAGATGCAAAACAG+CGG - chr2_4:54049056-54049075 None:intergenic 50.0%
ACCGCACGATCTAAATCGGA+CGG + chr2_4:54049135-54049154 Msa0334950:intron 50.0%
ACCGTCCGATTTAGATCGTG+CGG - chr2_4:54049139-54049158 None:intergenic 50.0%
TCCCTCATCCTGCTACTACA+AGG + chr2_4:54049366-54049385 Msa0334950:intron 50.0%
GACCTTGTAGTAGCAGGATG+AGG - chr2_4:54049371-54049390 None:intergenic 50.0%
ATCCTGCTACTACAAGGTCC+AGG + chr2_4:54049372-54049391 Msa0334950:intron 50.0%
GGTCGTCTACCCAAAATCCT+TGG - chr2_4:54049982-54050001 None:intergenic 50.0%
! TGTCCACTTCTTTTCCCCTG+TGG + chr2_4:54050290-54050309 Msa0334950:intron 50.0%
TGACCACAGGGGAAAAGAAG+TGG - chr2_4:54050296-54050315 None:intergenic 50.0%
! TCGTGCTATTGGTGACTGCA+CGG + chr2_4:54050415-54050434 Msa0334950:intron 50.0%
GGCAGCAAGCACATTATCTG+AGG - chr2_4:54050736-54050755 None:intergenic 50.0%
GAGTGATGTTGCAACAACCG+AGG - chr2_4:54050757-54050776 None:intergenic 50.0%
CAATGAGAACCAAGCCTGCA+TGG - chr2_4:54050847-54050866 None:intergenic 50.0%
ACCTGCTGTGATTGAGGTCA+AGG + chr2_4:54050878-54050897 Msa0334950:CDS 50.0%
GCAGTTTAGGGGAGGTTCAT+CGG + chr2_4:54050980-54050999 Msa0334950:CDS 50.0%
CGGGTAGGTGTATTCGAATG+TGG - chr2_4:54051091-54051110 None:intergenic 50.0%
CATTCGAATACACCTACCCG+AGG + chr2_4:54051091-54051110 Msa0334950:CDS 50.0%
! CTATCCCTTTTACCTCGGGT+AGG - chr2_4:54051106-54051125 None:intergenic 50.0%
GGAGCAGTGGAAACATGCAA+TGG + chr2_4:54051329-54051348 Msa0334950:three_prime_UTR 50.0%
TAGGCCCAAGCACATTCGTT+GGG - chr2_4:54051434-54051453 None:intergenic 50.0%
AACGAATGTGCTTGGGCCTA+CGG + chr2_4:54051434-54051453 Msa0334950:three_prime_UTR 50.0%
!! TTGATTTGGAGGCTTGGAGG+AGG + chr2_4:54051468-54051487 Msa0334950:three_prime_UTR 50.0%
GCCTGTTAGGTCTAGTCACA+TGG + chr2_4:54051643-54051662 Msa0334950:three_prime_UTR 50.0%
GCCATGTGACTAGACCTAAC+AGG - chr2_4:54051647-54051666 None:intergenic 50.0%
TTATGGTAGAAGGGGAGCCT+TGG - chr2_4:54051689-54051708 None:intergenic 50.0%
ACCTGAGTTTGTGGCAGCTA+GGG + chr2_4:54051856-54051875 Msa0334950:three_prime_UTR 50.0%
GCTTTGCCCTGCCATTGAAA+TGG - chr2_4:54052007-54052026 None:intergenic 50.0%
TTGTGAAACCTTGAGGACGC+AGG - chr2_4:54052420-54052439 None:intergenic 50.0%
!! GGATTGGTGTCGAATGTGAC+AGG - chr2_4:54052758-54052777 None:intergenic 50.0%
GGGTTGTGAGTGCAGAGAAA+TGG - chr2_4:54052922-54052941 None:intergenic 50.0%
CGGGATTTCAACCCGAAATC+TGG + chr2_4:54053411-54053430 Msa0334950:three_prime_UTR 50.0%
!! GCATCTTCCTTTGAGATGGG+TGG + chr2_4:54053526-54053545 Msa0334950:three_prime_UTR 50.0%
!! TCCTTTGAGATGGGTGGGTT+AGG + chr2_4:54053532-54053551 Msa0334950:three_prime_UTR 50.0%
!! CCTTTGAGATGGGTGGGTTA+GGG + chr2_4:54053533-54053552 Msa0334950:three_prime_UTR 50.0%
!! CTTTGAGATGGGTGGGTTAG+GGG + chr2_4:54053534-54053553 Msa0334950:three_prime_UTR 50.0%
!! GTAGCTTTGAGGGGAACAGT+AGG + chr2_4:54053586-54053605 Msa0334950:three_prime_UTR 50.0%
! AGGGGAACAGTAGGGTTTTG+AGG + chr2_4:54053595-54053614 Msa0334950:three_prime_UTR 50.0%
!! GGGGAACAGTAGGGTTTTGA+GGG + chr2_4:54053596-54053615 Msa0334950:three_prime_UTR 50.0%
GTGGTTGAGGACGTGGTACT+TGG - chr2_4:54047719-54047738 None:intergenic 55.0%
! CGTCGAGGCGCCTTTCTTAT+AGG + chr2_4:54048405-54048424 Msa0334950:CDS 55.0%
ACACTAGAGCAGGTGCAGCA+AGG + chr2_4:54048945-54048964 Msa0334950:intron 55.0%
CACCTGGACCTTGTAGTAGC+AGG - chr2_4:54049377-54049396 None:intergenic 55.0%
CGTGCAAACAGTGACCACAG+GGG - chr2_4:54050307-54050326 None:intergenic 55.0%
GCGTGCAAACAGTGACCACA+GGG - chr2_4:54050308-54050327 None:intergenic 55.0%
TGCGTGCAAACAGTGACCAC+AGG - chr2_4:54050309-54050328 None:intergenic 55.0%
GCAGGAACTAGTTCCGCAGA+CGG - chr2_4:54050678-54050697 None:intergenic 55.0%
GCCTTGACCTCAATCACAGC+AGG - chr2_4:54050882-54050901 None:intergenic 55.0%
! AGAAGGTGCGGTCGCAGTTT+AGG + chr2_4:54050967-54050986 Msa0334950:CDS 55.0%
! GAAGGTGCGGTCGCAGTTTA+GGG + chr2_4:54050968-54050987 Msa0334950:CDS 55.0%
AAGGTGCGGTCGCAGTTTAG+GGG + chr2_4:54050969-54050988 Msa0334950:CDS 55.0%
GTAGGCCCAAGCACATTCGT+TGG - chr2_4:54051435-54051454 None:intergenic 55.0%
GACCTGAGTTTGTGGCAGCT+AGG + chr2_4:54051855-54051874 Msa0334950:three_prime_UTR 55.0%
TCCCTAGCTGCCACAAACTC+AGG - chr2_4:54051860-54051879 None:intergenic 55.0%
CAGCTAGGGACATTACCTCC+TGG + chr2_4:54051870-54051889 Msa0334950:three_prime_UTR 55.0%
TCAATGGCAGGGCAAAGCCA+TGG + chr2_4:54052009-54052028 Msa0334950:three_prime_UTR 55.0%
CCCTAACCCACCCATCTCAA+AGG - chr2_4:54053536-54053555 None:intergenic 55.0%
!! AGATGGGTGGGTTAGGGGAA+GGG + chr2_4:54053539-54053558 Msa0334950:three_prime_UTR 55.0%
GAGTGAGGACTGGATGGATG+TGG + chr2_4:54053561-54053580 Msa0334950:three_prime_UTR 55.0%
GTAGGGTGTGGTTGAGGACG+TGG - chr2_4:54047726-54047745 None:intergenic 60.0%
GCAGGACGCTCTAACAGCAC+AGG - chr2_4:54049162-54049181 None:intergenic 60.0%
GAGCGTCCTGCTGTAACAGC+AGG + chr2_4:54049171-54049190 Msa0334950:intron 60.0%
GTCAGCACATCGGTGACCGT+TGG - chr2_4:54050386-54050405 None:intergenic 60.0%
! AAGGCGTGCTGCTGCGTTGT+TGG - chr2_4:54050649-54050668 None:intergenic 60.0%
ACGCCTTCAGCTACCGTCTG+CGG + chr2_4:54050662-54050681 Msa0334950:CDS 60.0%
GTTCCGCAGACGGTAGCTGA+AGG - chr2_4:54050668-54050687 None:intergenic 60.0%
TCCGGCGAGTCATCGATGAC+CGG + chr2_4:54053391-54053410 Msa0334950:three_prime_UTR 60.0%
!! GAGATGGGTGGGTTAGGGGA+AGG + chr2_4:54053538-54053557 Msa0334950:three_prime_UTR 60.0%
! TGGGTTAGGGGAAGGGAGTG+AGG + chr2_4:54053546-54053565 Msa0334950:three_prime_UTR 60.0%
TAGGGGAAGGGAGTGAGGAC+TGG + chr2_4:54053551-54053570 Msa0334950:three_prime_UTR 60.0%
GGAAGGGAGTGAGGACTGGA+TGG + chr2_4:54053555-54053574 Msa0334950:three_prime_UTR 60.0%
TTGCGCGCGCGCACATAGTC+AGG + chr2_4:54048566-54048585 Msa0334950:intron 65.0%
GTGCGGTCGCAGTTTAGGGG+AGG + chr2_4:54050972-54050991 Msa0334950:CDS 65.0%
CCCGGTCATCGATGACTCGC+CGG - chr2_4:54053395-54053414 None:intergenic 65.0%
CCGGCGAGTCATCGATGACC+GGG + chr2_4:54053392-54053411 Msa0334950:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 54047637 54053894 54047637 ID=Msa0334950;Name=Msa0334950
chr2_4 mRNA 54047637 54053894 54047637 ID=Msa0334950-mRNA-1;Parent=Msa0334950;Name=Msa0334950-mRNA-1;_AED=0.03;_eAED=0.03;_QI=656|0.66|0.75|1|1|1|4|2725|345
chr2_4 exon 54047637 54048530 54047637 ID=Msa0334950-mRNA-1:exon:16270;Parent=Msa0334950-mRNA-1
chr2_4 exon 54049956 54050011 54049956 ID=Msa0334950-mRNA-1:exon:16271;Parent=Msa0334950-mRNA-1
chr2_4 exon 54050125 54050220 54050125 ID=Msa0334950-mRNA-1:exon:16272;Parent=Msa0334950-mRNA-1
chr2_4 exon 54050522 54053894 54050522 ID=Msa0334950-mRNA-1:exon:16273;Parent=Msa0334950-mRNA-1
chr2_4 five_prime_UTR 54047637 54048292 54047637 ID=Msa0334950-mRNA-1:five_prime_utr;Parent=Msa0334950-mRNA-1
chr2_4 CDS 54048293 54048530 54048293 ID=Msa0334950-mRNA-1:cds;Parent=Msa0334950-mRNA-1
chr2_4 CDS 54049956 54050011 54049956 ID=Msa0334950-mRNA-1:cds;Parent=Msa0334950-mRNA-1
chr2_4 CDS 54050125 54050220 54050125 ID=Msa0334950-mRNA-1:cds;Parent=Msa0334950-mRNA-1
chr2_4 CDS 54050522 54051169 54050522 ID=Msa0334950-mRNA-1:cds;Parent=Msa0334950-mRNA-1
chr2_4 three_prime_UTR 54051170 54053894 54051170 ID=Msa0334950-mRNA-1:three_prime_utr;Parent=Msa0334950-mRNA-1
Gene Sequence

>Msa0334950

ATGTCTATTTTGGATTGGAACAATAAAATGCAGCTGCATATATCTCCAAGTTTGAGGCATGTTACTGTCCTTCCAGGCAAAGGACTTAAAGAGTTTATCAAAGTGAAAGTTGCGTCGAGGCGCCTTTCTTATAGGATGCTCTTCTATTCACTTTTGTTCTTCACTTTTCTTCTGAGGTTTGTGTTTGTTTTAACAGCTGTGGATGGCATTGATGCACAAAACAAGTGCTCTACCATAGGTTGTCTGGGAAAAAAATTAGGGCCAAGGATTTTGGGTAGACGACCTGAATCAACTGTCCCAGAAGTGATATACCAAACTTTAGATGAACCAATTGGCAATGATGAACTAAAGGGAAGGTTTGATATTCCACAAACTTTAGAAGAGTTCATGGTAACCCTTATGGAACAAAGGACTAGGTTGGCCAAAATCCAAGAGTATCTATATCGCCATGTAGCATCAAGCAGCATACCGAAACAACTTCATTGTCTTGACTTGAGATTAGCACATGAGCATACCAACAACGCAGCAGCACGCCTTCAGCTACCGTCTGCGGAACTAGTTCCTGCCCTTGTTGACAATTCCTATTACCATTTTGTTTTAGCCTCAGATAATGTGCTTGCTGCCTCGGTTGTTGCAACATCACTCGTTCGTAACTGTTTACGACCTAATAAGGTTGTTATACACATAATTACAGACCGGAAGACTTATTATCCCATGCAGGCTTGGTTCTCATTGCATCCTTTATCACCTGCTGTGATTGAGGTCAAGGCATTGCACCATTTTGATTGGTTTTCAAAGGGGAAGGTGCCTGTTTTAGAAGCAATGGAGAAAGATCAGAAGGTGCGGTCGCAGTTTAGGGGAGGTTCATCGGCTATAGTTGCGAATACATCTGAGAAGCCAAATGTTATTGCAGCAAAACTACAGGCACTTAGTCCCAAGTATAATTCCGTGATGAACCACATTCGAATACACCTACCCGAGGTAAAAGGGATAGCTAGCATAGCAAGTAAATCATTTTTGTTTTTTGATAGCTTATAA
Protein sequence

>Msa0334950

MSILDWNNKMQLHISPSLRHVTVLPGKGLKEFIKVKVASRRLSYRMLFYSLLFFTFLLRFVFVLTAVDGIDAQNKCSTIGCLGKKLGPRILGRRPESTVPEVIYQTLDEPIGNDELKGRFDIPQTLEEFMVTLMEQRTRLAKIQEYLYRHVASSSIPKQLHCLDLRLAHEHTNNAAARLQLPSAELVPALVDNSYYHFVLASDNVLAASVVATSLVRNCLRPNKVVIHIITDRKTYYPMQAWFSLHPLSPAVIEVKALHHFDWFSKGKVPVLEAMEKDQKVRSQFRGGSSAIVANTSEKPNVIAAKLQALSPKYNSVMNHIRIHLPEVKGIASIASKSFLFFDSL*